Citrus Sinensis ID: 001159
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1135 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.965 | 0.969 | 0.673 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.970 | 0.983 | 0.659 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.985 | 0.985 | 0.634 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.959 | 0.962 | 0.651 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.964 | 0.988 | 0.614 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.276 | 0.231 | 0.270 | 2e-17 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.523 | 0.389 | 0.216 | 6e-14 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.432 | 0.291 | 0.222 | 5e-12 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.553 | 0.499 | 0.205 | 1e-11 | |
| Q12788 | 808 | Transducin beta-like prot | yes | no | 0.414 | 0.582 | 0.202 | 7e-11 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
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Score = 1556 bits (4030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1130 (67%), Positives = 897/1130 (79%), Gaps = 34/1130 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR P P NNPL+G IPKAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGP-PNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + + SSKP IN++ A+ +A A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSE---------SSKP-AINSIAAAAAAAATSA- 706
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 707 --GHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 827
+++ +K + RLI+TNSG ++LALASNA+H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAK-ISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG 822
Query: 828 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATF
Sbjct: 823 ILMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 881
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 947
LAFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADA
Sbjct: 882 LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADA 941
Query: 948 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLE 1006
QLC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y+ +KLE
Sbjct: 942 QLCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLE 1001
Query: 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1066
C + W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P
Sbjct: 1002 CMKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASL 1060
Query: 1067 VSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1116
++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1061 SNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1550 bits (4014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1147 (65%), Positives = 895/1147 (78%), Gaps = 45/1147 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR P P NNPL+G +PKA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ +DN IK++ANSDG+RLL +E + + SSKP IN++ P
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSE---------SSKP-AINSI-----------P 696
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ERP VSI + D +VDVKP + E+ DK K W++ ++ +PSQ ++LRLP
Sbjct: 697 MVERP---ASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 768 DSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 827
+++ +K + RLI+TNSG ++LALASNA+H LWKWQR +RN +GKATA++ PQ WQP SG
Sbjct: 753 ENMRVTK-ISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG 811
Query: 828 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATF
Sbjct: 812 ILMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 870
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 947
LAFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADA
Sbjct: 871 LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADA 930
Query: 948 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLE 1006
QLC+W+ D WEK KS+ +Q P GR + + +T+VQFH DQ H LVVHE+Q+++Y+ +KLE
Sbjct: 931 QLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLE 990
Query: 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1066
C + W +++ API+ A +SCD L+Y F D I VF + LR RCR+ PSAY+P
Sbjct: 991 CMKQWPVRES-AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASL 1049
Query: 1067 VSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPP 1126
++ HPLVIA HP E N A+G+SDG VH+ EP ++E KWG P +NG + ++ P
Sbjct: 1050 SNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPS 1109
Query: 1127 LTGQPSE 1133
+ S+
Sbjct: 1110 VGASASD 1116
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1498 bits (3878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1146 (63%), Positives = 893/1146 (77%), Gaps = 27/1146 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM++FED V AGEWD+VE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD++D AKAV+ILVK+LKVFS+FNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKL FPS K+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C NGA P PT N L+G +PK G FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCG-HPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKH--PRTP-TGMTGMD 297
QP +P ++AGWM + PS+ HP+++AGP G P+SAV LK PR+P T MD
Sbjct: 240 QPTPAPLTTSLAGWMPN--PSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMD 297
Query: 298 YQSADSDHLMKRIRT-GQSD----------EVSFAGVAHTPNVYSQDDLTKTVVRTLNQG 346
YQ+ADS+ ++KR R G SD V++ G +H YS DDL K V R L+QG
Sbjct: 298 YQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQG 357
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S + SMDFHP QQT+LLVGTN+GDI++WEVGSRE+L + FKVWD++ ++ LQ +L ++
Sbjct: 358 SAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASE 417
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+VNR VW PDG +LGVA+SKHIVH+Y+Y+ +LR HLEIDAH G VND+AF+ PN+
Sbjct: 418 YTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQ 477
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
QLC+VTCG+DK IKVWD V G K +TFEGHEAPVYSVCPH KE+IQFIFSTA+DGKIKAW
Sbjct: 478 QLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAW 537
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
LYD +GSRVDYDAPG CT MAY ADGTRLFSCGTSKEGES +VEWNESEGA+KRTY G
Sbjct: 538 LYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGL 597
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
KRS+GVVQFDT +N+FL AGDEFQ+KFWDMD++++L++ A+GGLP+SP LR NKEG+L
Sbjct: 598 GKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTL 657
Query: 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706
LAV+T+DNGIKILAN++G R+L + R +D +R P ++ P+ +G +++
Sbjct: 658 LAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPI----VGTFGTPNSST 713
Query: 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+L +R P S++ L D L DVKPR+A+D +K K+W++ +IS+ SQ++ LRL
Sbjct: 714 GMSLSMGERSGPVASVTGLNG-DNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRL 772
Query: 767 PDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 826
PD++ ++ VV+LIYTNSG ++LALA NA HKLWKWQ++ERN GKA +NV PQLWQP S
Sbjct: 773 PDTLLPAR-VVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSS 831
Query: 827 GTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAAT 886
G LMTND E E+ C ALSKNDSYVMSASGGK+SLFNMMTFK MT FM+PPPAAT
Sbjct: 832 GVLMTNDTREGN-KEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 887 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 946
LAFHPQDNNIIAIGM+DSS+QIYNVRVDEVK+KLKGHQ R+TGLAFS LN LVSSGAD
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 947 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KL 1005
+QLC+WS+D WEK S+ IQ P+G + T+VQFH DQ H+LVVH SQ+++Y++ KL
Sbjct: 951 SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010
Query: 1006 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1065
E + W PK++ ++ A+YSCD +YA F DG++ + A TL+ +CRIGP++Y+P+
Sbjct: 1011 ENMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSN 1069
Query: 1066 AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1125
S+ +P +A HPSEPNQ A+G++DG VHV+EP E KWG + +NG PS SS P
Sbjct: 1070 P-SSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP 1128
Query: 1126 PLTGQP 1131
QP
Sbjct: 1129 GSDQQP 1134
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1463 bits (3788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/1117 (65%), Positives = 875/1117 (78%), Gaps = 28/1117 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR P N P V + + F P+G H GP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLP-VAAVARPSNFVPLGVHGGP 238
Query: 240 FQP--VVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPP--ASLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD ++G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIG-KIEHMD 706
Query: 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774
G PA I+ KPR + VDK K + +I DP+Q + + +PDS +
Sbjct: 707 AGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVS 766
Query: 775 VVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 834
V RL+YTNSG+ +LAL SN V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND+
Sbjct: 767 KVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDV 826
Query: 835 NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 894
E+ E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQD
Sbjct: 827 PENP--EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQD 884
Query: 895 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
NNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 885 NNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTA 944
Query: 955 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSP 1013
D WEK KS IQ P G+ VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W P
Sbjct: 945 DSWEKKKSSAIQLPPGKAP--VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVP 1002
Query: 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA-- 1071
++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P N+A
Sbjct: 1003 QEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQ-PTPNSAPI 1061
Query: 1072 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1062 FPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1385 bits (3585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 694/1129 (61%), Positives = 851/1129 (75%), Gaps = 34/1129 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN K+F+++V AGEWD+VE YL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDRQ++AKAVEILV+DL+VFS+FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP+ +SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLFTDH+C NG P N P V + K +P +G H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCT-LPNGPLAPSAVNQP-VTTLTKPAAYPSLGPHVPF 238
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGM-DY 298
+ + GA+A WM++ S + + P QP + + LK PRTP G+ DY
Sbjct: 239 PPGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 299 QSADSDHLMKRIRTGQS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
Q+ D + LMKR+R S +EV++ A P +S +DL L+QGS V SM+F+P
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPAPRQQAP--WSLEDLPTKAALALHQGSTVTSMEFYP 355
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
Q T+LLVG+ G+I+LWE+ +RERL +PFK+WD+S S Q + + ISV R W
Sbjct: 356 MQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAW 415
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +GVAF+KH++ LY ++ +LRQH EIDAHVG VND+AFA+PN+QLC++TCGDD
Sbjct: 416 SPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDD 475
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K+IKVWD V+GRK +TFEGH+APVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 476 KLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 534
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG WCT M YSADGTRLFSCGTSK+G+S LVEWNESEG+IKRTY F+K+ GVVQF
Sbjct: 535 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQF 594
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DT++N FLA G++ QIKFWDM+N+N+LT+ DA+GGLPA P LRFNK+G+LLAVTT+DNG
Sbjct: 595 DTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGF 654
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN G R LR +E A + R P + + P P ++V+ + +RG
Sbjct: 655 KILANPAGFRSLRAMETPASETMRTPVD-FKAVP-----GAPVASVNCKV-------ERG 701
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776
P L +D S K R+ + DK KSW++ +I DPSQ LPD+ +S V
Sbjct: 702 SPVRHSQMLNGVDPS-----KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 836
V+L+YTNSG +LAL SN + +LWKW E+NPSGKATA V PQ WQP SG LMTND++
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSG 816
Query: 837 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 896
E +A CIALSKNDSYVMSA+GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQDNN
Sbjct: 817 VN-LENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
+IAIGMEDS++ IYNVRVDEVK+KLKGHQ RITGLAFS LN LVSSGADAQ+C WSID
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKD 1015
WEK KS IQ PAG+ + G+T+VQFH DQ +LVVHE+Q++V+D SK+EC R W P+D
Sbjct: 936 WEKRKSVAIQMPAGKAAN--GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 1016 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV 1075
+L APISSA+Y+C+ L+Y F DG IGVFDA++LR RCRI PSAY+P + PLV
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG--NQGLSPLV 1051
Query: 1076 IAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSN 1124
+A HP +PNQ A+G++DG+V ++EP++ E KWG P + PS +SN
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTSN 1100
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 149/359 (41%), Gaps = 45/359 (12%)
Query: 308 KRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGT 366
+R+ +G D HT ++ D + T +TL GS+V+S+ F P Q V +
Sbjct: 938 QRVASGSDD--------HTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQR---VAS 984
Query: 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426
GD K K+WD ++ + L SV + PDG +
Sbjct: 985 GSGD--------------KTIKIWDTASGTC---TQTLEGHGGSVWSVAFSPDGQRVASG 1027
Query: 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ ++ +G Q LE H G V + F+ P+ Q + + DD IK+WD V+
Sbjct: 1028 SDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-PDGQR-VASGSDDHTIKIWDAVS 1082
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546
G T EGH V+SV Q + S +IDG IK W + G W
Sbjct: 1083 GTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHS 1140
Query: 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606
+A+S DG R+ S S +G + W+ + G +T G + V F R +
Sbjct: 1141 VAFSPDGQRVAS--GSIDGTIKI--WDAASGTCTQTLEG-HGGWVQSVAFSPDGQRVASG 1195
Query: 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665
+ IK WD + T++ GG S + F+ +G +A +SDN IKI + G
Sbjct: 1196 SSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTASGT 1252
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 157/726 (21%), Positives = 272/726 (37%), Gaps = 132/726 (18%)
Query: 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 406
+V+++ F P + + G + G + WE + +E L K W
Sbjct: 866 SVLTVAFSPDGK-LFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
VN + DG ML V L+ + L+ H V + F+ PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFS-PNS 960
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
L + + D+ +++WD+ +G Y F+GH VYSV + S+ + + + D ++ W
Sbjct: 961 -LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 527 LYDYLGSRVDYDAPGNWCTM--MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584
D S+ Y G+ + + +S+DG L S + + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644
G VV F + GD+ ++ WD+ + N L T+ + +RF
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQG-----YTSWVRF---- 1121
Query: 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704
+ S NG+ LAN +++R+ + ISSK G + V+A
Sbjct: 1122 ----LVFSPNGVT-LANGSSDQIVRLWD-------------ISSKKCLYTLQGHTNWVNA 1163
Query: 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDV-KPRVAEDVDKIKSWRIPDISDPSQIKA 763
P +++S RL D+ + + SW + +P
Sbjct: 1164 VAFS--------PDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTL 1215
Query: 764 LRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP---- 819
+ +S VRL NS L H W NP G A+ +
Sbjct: 1216 -----ASGSSDQTVRLWEINSSKCLCTFQG---HTSWV-NSVVFNPDGSMLASGSSDKTV 1266
Query: 820 QLWQPPSGTLM------TNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTF 872
+LW S + TN +N +A + + S + S SG + V L+ + +
Sbjct: 1267 RLWDISSSKCLHTFQGHTNWVNS----------VAFNPDGSMLASGSGDQTVRLWEISSS 1316
Query: 873 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 932
K + F + + F P D ++A G +D +V+++++ E GH N + +
Sbjct: 1317 KCLHTFQGHTSWVSSVTFSP-DGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVI 1375
Query: 933 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992
FSP L S D + +WSI + L + +Q HN+ +V
Sbjct: 1376 FSPDGAILASGSGDQTVRLWSISSGKCLYT------------------LQGHNNWVGSIV 1417
Query: 993 VH-ESQISVYDSKLECSRSW--SPKDALPA------PISSAIYSCDGLLVYAGFCDGAIG 1043
+ + S + R W S + L + S +S DGL++ +G D I
Sbjct: 1418 FSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIK 1477
Query: 1044 VFDAET 1049
++D +T
Sbjct: 1478 LWDVKT 1483
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 131/589 (22%), Positives = 224/589 (38%), Gaps = 98/589 (16%)
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465
DA SV+ + PDG + S + L+ + L+ I H VN++ F+
Sbjct: 1114 DAVYSVS---FSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDG 1167
Query: 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525
K L + D IK+WD +G+ T GH A V +V Q I + + D +K
Sbjct: 1168 KNLA--SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKL 1223
Query: 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585
W + +W +++S DG L S K + W ++G + +T G
Sbjct: 1224 WHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT----IKLWRIADGKLVKTLKG 1279
Query: 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645
S+ V F + +A + IK W+ + + T GG+ A + F + +
Sbjct: 1280 -HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VNFLPDSN 1335
Query: 646 LLAVTTSDNGIK-----------ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694
++A + DN I+ +LA + GV + L ++ I
Sbjct: 1336 IIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSI----------------IA 1379
Query: 695 ALGPASNVS------AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748
G N+ ++ TL ++ +S + G + S D +K
Sbjct: 1380 TAGADGNIQLWHSQDGSLLKTLP-GNKAIYGISFTPQGDLIASANAD---------KTVK 1429
Query: 749 SWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLW-----KWQ 803
WR+ D KAL+ I V ++ ++ G +L + + + KLW K++
Sbjct: 1430 IWRVRDG------KALK--TLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFK 1481
Query: 804 RTER-----------NPSGK----ATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CI 847
+T + +P GK A+A+ +LW SG L+ +S P +
Sbjct: 1482 KTLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLI-----KSLPAHNDLVYSV 1536
Query: 848 ALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 906
+ + S + S S K V L+ ++ F +F P D IA ED +
Sbjct: 1537 NFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKT 1595
Query: 907 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955
V+I+ + + T L HQ + FSP L+S D +W D
Sbjct: 1596 VKIWQID-GHLLTTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFD 1643
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 140/682 (20%), Positives = 261/682 (38%), Gaps = 54/682 (7%)
Query: 305 HLMKRIRTGQSDEVSFAGVAHTPNV--YSQDDLTK------TVVRTLNQGSNVMSMDFHP 356
H++ R+R E +AG + N+ ++Q DL+ TV + QG N+ +DF
Sbjct: 572 HILSRLRGKSPQETGYAG-GNVLNLLHHAQVDLSGYDFSGLTVWQAYLQGVNLHDVDFAN 630
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKP-----FKVWDISAASMPLQNALLNDAAISV 411
+ + +G+I +L +VW++ + + L + + V
Sbjct: 631 SDLSCCVFTETLGNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLL---ICRGHSNWV 687
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
V+ PDG +L + V L++ ++ + H V +AF HP+ + +
Sbjct: 688 RFVVFSPDGEILASCGADENVKLWSVRDGVCIK---TLTGHEHEVFSVAF-HPDGET-LA 742
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531
+ DK IK+WD+ G T GH V C + S+A D IK W
Sbjct: 743 SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CVAFSPDGNTLASSAADHTIKLWDVSQG 800
Query: 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591
+ W +A+SADG L S G+ + WN G +TY G
Sbjct: 801 KCLRTLKSHTGWVRSVAFSADGQTL----ASGSGDRTIKIWNYHTGECLKTYIGHTNSVY 856
Query: 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651
+ ++ +GD IK WD + T+ S + F+ +G LA +
Sbjct: 857 SIAYSPDSKILVSGSGDR-TIKLWDCQTHICIKTLHGHTNEVCS--VAFSPDGQTLACVS 913
Query: 652 SDNGIKILANSDGVRLLRMLEGR---AMDKNRCPSEPI-----SSKPLTINALGPASNVS 703
D ++ L N + L+ G A+ P I + K + + +S
Sbjct: 914 LDQSVR-LWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYIS 972
Query: 704 AAIAPT--LERPDRGPPAVSISSLGTIDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQ 760
+ T + P + +++S T RL ++ + + + + W + P Q
Sbjct: 973 SLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHP-Q 1031
Query: 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 820
K + + ++ V+L ++G L L+ ++ L + A+A+ + +
Sbjct: 1032 GKII----ATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Query: 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFM 879
LW +G + S + S N + + S + V +++ K +
Sbjct: 1088 LWDCCTGRCVGILRGHSNRVYSAI----FSPNGEIIATCSTDQTVKIWDWQQGKCLKTLT 1143
Query: 880 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 939
+AF P D I+A D +V+I++V + GH + ++ +AFSP
Sbjct: 1144 GHTNWVFDIAFSP-DGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEV 1202
Query: 940 LVSSGADAQLCMWSIDKWEKLK 961
+ S D + +W++ E L+
Sbjct: 1203 VASGSQDQTVRIWNVKTGECLQ 1224
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 108/533 (20%), Positives = 204/533 (38%), Gaps = 62/533 (11%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
H V +AF P L + T G D ++VWD+V + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTR 165
Query: 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571
+FS+A D I+ W A + T +A+SADG + S G K +
Sbjct: 166 LLLFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKI----CII 221
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNR---------FLAAGDEFQIKFWD-MDNMN 621
W+ RT F V+ + ++ FL AGD+ ++ W+
Sbjct: 222 WDLQSCQATRTVPVFESVEAAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQC 281
Query: 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681
+ T G ++ T+D+ + +L + +RL + G
Sbjct: 282 VYTQAQPPGPGQELTHCTLAHTAGVVLTATADHNL-LLYEARSLRLQKQFAG-------- 332
Query: 682 PSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV--K 737
S + L + LGP + V A+ +P L+ + A I G D +DV K
Sbjct: 333 ----YSEEVLDVRFLGPEDSHVVVASNSPCLKVFELQTSACQILH-GHTDIVLALDVFRK 387
Query: 738 PRVAEDVDKIKSWRIPDISDPSQIKAL-------RLPDSIAASKVVVRLIYTNSGLSLLA 790
+ K +S RI ++ Q+ + ++ S++ + T S
Sbjct: 388 GWLFASCAKDQSVRIWRMNKAGQVMCVAQGSGHTHSVGTVCCSRLKESFLVTGS------ 441
Query: 791 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850
+ KLW P + N AP +G ++ + ++ +A++
Sbjct: 442 --QDCTVKLWPL------PKALLSKNTAPD-----NGPILLQAQTTQRCHDKDINSVAIA 488
Query: 851 KNDSYVMSASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 909
ND + + S + + L+ + +++ +F + F P D ++A D ++++
Sbjct: 489 PNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMD-QVLATASADGTIKL 547
Query: 910 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 962
+ ++ +GH + +AF L+SSG+D + +W+I E +++
Sbjct: 548 WALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRT 600
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1135 | ||||||
| 255557965 | 1137 | conserved hypothetical protein [Ricinus | 0.997 | 0.995 | 0.895 | 0.0 | |
| 225454832 | 1135 | PREDICTED: protein TOPLESS [Vitis vinife | 0.996 | 0.996 | 0.859 | 0.0 | |
| 224128866 | 1099 | predicted protein [Populus trichocarpa] | 0.963 | 0.995 | 0.842 | 0.0 | |
| 115474917 | 1133 | Os08g0162100 [Oryza sativa Japonica Grou | 0.995 | 0.997 | 0.765 | 0.0 | |
| 357144889 | 1135 | PREDICTED: topless-related protein 1-lik | 0.987 | 0.987 | 0.771 | 0.0 | |
| 37806272 | 1150 | WD-40 repeat protein-like [Oryza sativa | 0.995 | 0.982 | 0.753 | 0.0 | |
| 304555573 | 1141 | ramosa 1 enhancer locus 2 [Zea mays] gi| | 0.992 | 0.987 | 0.768 | 0.0 | |
| 242078279 | 1136 | hypothetical protein SORBIDRAFT_07g00418 | 0.958 | 0.957 | 0.773 | 0.0 | |
| 168031165 | 1158 | predicted protein [Physcomitrella patens | 0.992 | 0.972 | 0.712 | 0.0 | |
| 168060004 | 1102 | predicted protein [Physcomitrella patens | 0.962 | 0.990 | 0.718 | 0.0 |
| >gi|255557965|ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis] gi|223540775|gb|EEF42335.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2095 bits (5429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1015/1134 (89%), Positives = 1070/1134 (94%), Gaps = 2/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEIL KDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILCKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP+FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPAFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNP-TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPRPNPDIKTLFTDHSC+P T+NGARPPPPTN+P+VGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCSPSTANGARPPPPTNSPIVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSPSPGAIAGWMSSN+PSLPHP++AAGPPG VQPSSA FLKHPRTPTGMTG+DYQ
Sbjct: 241 FQPVVSPSPGAIAGWMSSNNPSLPHPAVAAGPPGLVQPSSAAAFLKHPRTPTGMTGIDYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+RTGQSDEVSF+GVAHTPNVYS DDL KTV+R+L+QGSNVMSMDFHPQQQ
Sbjct: 301 SADSEHLMKRMRTGQSDEVSFSGVAHTPNVYSPDDLPKTVMRSLSQGSNVMSMDFHPQQQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SAASMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSAASMPLQAALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV LY YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD VAGR+QYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAVAGRRQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADG+RLFSCGTSKEGESHLVEWNESEG IKRTYSGFRKRS GVVQFDTT
Sbjct: 541 PGLWCTMMAYSADGSRLFSCGTSKEGESHLVEWNESEGTIKRTYSGFRKRSSGVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+RFLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSRFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
ANSDG+RL+RMLE RA+DKNR PSEPI+SKPL +NALGP +NVS+ +A LER DR PPA
Sbjct: 661 ANSDGLRLIRMLESRAIDKNRSPSEPINSKPLIVNALGPVANVSSGLATALERVDRMPPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779
V+ISSLGT+D SRLVDVKPR+++++DKIKSW+IPDI D S +KALRLPDSIA K VVRL
Sbjct: 721 VAISSLGTMDSSRLVDVKPRISDELDKIKSWKIPDIVDQSHLKALRLPDSIATGK-VVRL 779
Query: 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 839
IYTNSGL+LLALASNAVHKLWKWQR+ERNPSGKATA VAPQLWQPPSGTLMTNDI++SKP
Sbjct: 780 IYTNSGLALLALASNAVHKLWKWQRSERNPSGKATAYVAPQLWQPPSGTLMTNDISDSKP 839
Query: 840 TEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIA
Sbjct: 840 AEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIA 899
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 959
IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEK 959
Query: 960 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA 1019
KSRFIQAP GRQSPL GETKVQFHNDQTHLLVVHESQI++YDSKLEC RSW PKD L A
Sbjct: 960 KKSRFIQAPPGRQSPLAGETKVQFHNDQTHLLVVHESQIAIYDSKLECLRSWYPKDTLTA 1019
Query: 1020 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079
PI+SAIYS DGLLVY GFCDGA+GVFDA++LR RCRI PSAYIP+ N A+PLVIA H
Sbjct: 1020 PIASAIYSSDGLLVYTGFCDGAVGVFDADSLRVRCRIAPSAYIPSSVAGNNAYPLVIAAH 1079
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
PSEPNQIALGMSDGAVHVVEPSD ELKWGG SQDNG PSNSSNP L+GQ SE
Sbjct: 1080 PSEPNQIALGMSDGAVHVVEPSDVELKWGGPSSQDNGSHPSNSSNPSLSGQQSE 1133
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454832|ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297737353|emb|CBI26554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2056 bits (5327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 974/1133 (85%), Positives = 1051/1133 (92%), Gaps = 2/1133 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSAR IML+ELKKLIEANPLFRDKL+FP+FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARGIMLIELKKLIEANPLFRDKLTFPAFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPR NPDIKTLFTDH+C PT NGARPPPPTNNPLVGPIPKAG FPPIGAH PF
Sbjct: 181 WQHQLCKNPRSNPDIKTLFTDHACTPT-NGARPPPPTNNPLVGPIPKAGAFPPIGAHNPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSPGAIAGWMSS +PSLPH ++AAGPP VQPS+A FLKH RTPTG+TGMDYQS
Sbjct: 240 QPVVSPSPGAIAGWMSSTNPSLPHAAVAAGPPSLVQPSTAAAFLKHQRTPTGVTGMDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
DS+HLMKRIRTGQSDEVSF+GVAH PNVYSQDDL K+VVRT+ QGSNVMSMDFHPQQQT
Sbjct: 300 GDSEHLMKRIRTGQSDEVSFSGVAHAPNVYSQDDLPKSVVRTITQGSNVMSMDFHPQQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
+LLVGTNVGDISLWEVGSRERLAHKPFKVWDISA SMPLQ ALL DA ISVNRCVWGPDG
Sbjct: 360 VLLVGTNVGDISLWEVGSRERLAHKPFKVWDISACSMPLQTALLKDATISVNRCVWGPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
L+LGVAFSKHIV +YTYNPTGELRQHLEIDAH+GGVND+AFAHPNKQLCIVTCGDDK IK
Sbjct: 420 LILGVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVNDVAFAHPNKQLCIVTCGDDKTIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD GR+ YTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGRRLYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCTMMAYSADGTRLFSCGTSK+GESHLVEWNESEGAIKRTY GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTMMAYSADGTRLFSCGTSKDGESHLVEWNESEGAIKRTYLGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEFQIKFWDMDN N+LT V+A+GGLPASPRLRFNKEGSLLAVTT+DNGIKILA
Sbjct: 600 NRFLAAGDEFQIKFWDMDNTNILTAVEAEGGLPASPRLRFNKEGSLLAVTTNDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG+RL RMLE R M+ +R PSEPI+SKPL +NALGPA+NVSAA++P+LER DR PAV
Sbjct: 660 NNDGLRLTRMLESRPMEGHRGPSEPINSKPLIVNALGPAANVSAAMSPSLERSDRIQPAV 719
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780
SI++L T+D SRLVDVKP++++D++KIKSW+IPDI D SQ+KALRLPD + K VVRLI
Sbjct: 720 SINNLATMDSSRLVDVKPKISDDLEKIKSWKIPDIVDQSQLKALRLPDPVTTGK-VVRLI 778
Query: 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840
YTNSGL+LLAL SNAVHKLWKWQR+ERNP GK+TA V PQLWQP +GTLMTND ++ P
Sbjct: 779 YTNSGLALLALISNAVHKLWKWQRSERNPLGKSTAYVVPQLWQPANGTLMTNDTGDNNPP 838
Query: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 900
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 839 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 898
Query: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 960
GMEDS++QIYNVRVDEVKTKLKGHQ R+TGLAFS LN LVSSGADAQLC+WSID WEK
Sbjct: 899 GMEDSTIQIYNVRVDEVKTKLKGHQKRVTGLAFSQILNCLVSSGADAQLCVWSIDGWEKR 958
Query: 961 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1020
KSRFIQAPAGR SPLVG+TKVQFHNDQ HLLVVHESQI+VYDSKLEC RSWSPKD+LPAP
Sbjct: 959 KSRFIQAPAGRSSPLVGDTKVQFHNDQAHLLVVHESQIAVYDSKLECVRSWSPKDSLPAP 1018
Query: 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1080
ISSAIYSCD +LVYAGF DGA+GVFDA++LR RCRI PSAYIP+ A+S+ +PLVIA HP
Sbjct: 1019 ISSAIYSCDSMLVYAGFGDGAVGVFDADSLRLRCRIAPSAYIPSPALSSGVYPLVIAAHP 1078
Query: 1081 SEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
SEPNQIALGMSDGAVHVVEP+D E KWGG P QDNG +PSNSSNP L+GQP+E
Sbjct: 1079 SEPNQIALGMSDGAVHVVEPTDTEPKWGGQPPQDNGSIPSNSSNPALSGQPTE 1131
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128866|ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|222839220|gb|EEE77571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1986 bits (5144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1134 (84%), Positives = 1017/1134 (89%), Gaps = 40/1134 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDE+ERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTS-NGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPR NPDIKTLF DHSC PT+ NGA PPPP+N PLVGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRSNPDIKTLFIDHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSP+PGAIAGWMS+N+PSLPHP++AAGPP VQPSSA FLKHPRTPTGMTGM+YQ
Sbjct: 241 FQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+R GQS+EVSF+G+AHTPN+YSQDDL KTVVRTLNQGSNVMSMDFHPQ Q
Sbjct: 301 SADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SA+SMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPLQTALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV +YTYNPTGE RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD AG +QY FEGHEAPVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAGAGGRQYIFEGHEAPVYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG+IKRTY GFRKRSL VVQFDTT
Sbjct: 541 PGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+ FLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
A+SDG+RL+RMLE RA+DK+R PSEPI+SKPL +NALG +NVS+ +A +LER DR PA
Sbjct: 661 ASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSVANVSSGLASSLERSDRIQPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779
VSI +LGT+D SRLVDVKPR+++D DK+KSW+ DI D SQ+KALRLPDSI A
Sbjct: 721 VSIGNLGTMDNSRLVDVKPRISDDTDKLKSWK-SDIVDSSQLKALRLPDSIVA------- 772
Query: 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 839
GKATA+ APQLWQPPSGT MTNDINESKP
Sbjct: 773 -------------------------------GKATASNAPQLWQPPSGTPMTNDINESKP 801
Query: 840 TEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIA
Sbjct: 802 AEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIA 861
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 959
IGMEDS+VQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 862 IGMEDSTVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEK 921
Query: 960 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA 1019
K RFIQAP RQSPLVGET+VQFHNDQ HLLVVHESQI++YDSKLECSRSWSPKD L A
Sbjct: 922 KKMRFIQAPPSRQSPLVGETRVQFHNDQAHLLVVHESQIAIYDSKLECSRSWSPKDTLAA 981
Query: 1020 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079
PISSAIYS DG LVY GFCDGA+GVFDA++LR RCRI PSAYIP++ +TA+PLVIA H
Sbjct: 982 PISSAIYSSDGFLVYTGFCDGAVGVFDADSLRIRCRIAPSAYIPSHPAGSTAYPLVIAAH 1041
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
PSEPNQIALGMSDGAVHVVEPSD E+KWGG SQDNG PSN+SNP +G SE
Sbjct: 1042 PSEPNQIALGMSDGAVHVVEPSDVEMKWGGPSSQDNGTHPSNTSNPSPSGHLSE 1095
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115474917|ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical protein OsI_27917 [Oryza sativa Indica Group] gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1854 bits (4803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 867/1132 (76%), Positives = 984/1132 (86%), Gaps = 2/1132 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVGPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAAFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + FLKHPRTPT +DYQS
Sbjct: 241 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSAPAIDYQS 300
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR LNQGSNVMS+DFHP QQT
Sbjct: 301 ADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPVQQT 360
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 361 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 420
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 421 SILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 480
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 481 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 540
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 541 GHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 600
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVT ++NGIKILA
Sbjct: 601 NRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILA 660
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP +N LG SNVS+ +A ERPDR P V
Sbjct: 661 NTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTV 720
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++ALR+PD+ A S VVRL+
Sbjct: 721 SMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLL 780
Query: 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840
YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQP +G LM ND ++ P
Sbjct: 781 YTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNP- 839
Query: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 900
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 840 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 899
Query: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 960
GMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSSGADAQLC WSID WEK
Sbjct: 900 GMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLCAWSIDGWEKK 959
Query: 961 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1020
KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+KLEC RSWSP++ALPAP
Sbjct: 960 KSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDAKLECLRSWSPREALPAP 1019
Query: 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI-PTYAVSNTAHPLVIAPH 1079
ISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYI P+ + + +P+V+A H
Sbjct: 1020 ISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMSSGGSVYPMVVAAH 1079
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQP 1131
P EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S+ P +P
Sbjct: 1080 PLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTISAAPAAANKP 1131
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357144889|ref|XP_003573449.1| PREDICTED: topless-related protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1841 bits (4768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1126 (77%), Positives = 981/1126 (87%), Gaps = 5/1126 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDMVQGGEWDEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL GPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLAGPIPKSAGFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVV+P+ AIAGWM++ +PSLPH ++A GP G VQP + FLKHPRTPT G+DYQS
Sbjct: 241 QPVVTPN--AIAGWMTNANPSLPHAAVAQGPSGLVQPPNTAAFLKHPRTPTSAPGIDYQS 298
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H PN YSQ+DL K VVRTLNQGSNVMS+DFHP QQT
Sbjct: 299 ADSEHLMKRMRVGQPDEVSFSGASHPPNAYSQEDLPKQVVRTLNQGSNVMSLDFHPVQQT 358
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 359 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 418
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 419 NILGVAFSKHIVQTYTFVPNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 478
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 479 VWDAQTGQKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 538
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT M+YSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 539 GHWCTTMSYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 598
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
N FLAAGDEF +KFWDMDN N+LTT + DGGLPASPRLRFN+EGSLLAVT +DNGIKILA
Sbjct: 599 NHFLAAGDEFVVKFWDMDNTNILTTAECDGGLPASPRLRFNREGSLLAVTANDNGIKILA 658
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP IN LG ASNVS+ IA ERPDR PAV
Sbjct: 659 NTDGQRLLRMLESRAFEGSRGPQQ-INTKPPLINTLGSASNVSSPIAVNSERPDRMLPAV 717
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D I+A R PD+ + VVRL+
Sbjct: 718 SMSGLAPMDVSRTQDVKPRITDEAEKMKTWKLSDIVDSGHIRARRCPDTASNPSKVVRLL 777
Query: 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840
YTN+G++LL+L SNA HKLWKWQR++RNP+GK+TA+++P LWQPP+G LMTND ++ P
Sbjct: 778 YTNNGIALLSLCSNAGHKLWKWQRSDRNPTGKSTASISPHLWQPPNGILMTNDTSDGNP- 836
Query: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 900
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 837 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 896
Query: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 960
GMEDS++QIYNVRVDEVK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 897 GMEDSTIQIYNVRVDEVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 956
Query: 961 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1020
KSR+IQ PA LVG+T+VQFHNDQTH+LVVHESQ+++YD KLECSRSW P+DALPAP
Sbjct: 957 KSRYIQPPANHSGALVGDTRVQFHNDQTHVLVVHESQLAIYDGKLECSRSWYPRDALPAP 1016
Query: 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI-PTYAVSNTAHPLVIAPH 1079
+SSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI SAYI P+ + +P+VIA H
Sbjct: 1017 VSSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIALSAYIPPSMPSGGSVYPMVIAAH 1076
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1125
P EPNQIA+GMSDGAVHVVEP D + KWG P QDNG PS SS P
Sbjct: 1077 PLEPNQIAVGMSDGAVHVVEPLDTDTKWGVAPPQDNGAHPSMSSAP 1122
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37806272|dbj|BAC99788.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] gi|125602281|gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1840 bits (4767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1149 (75%), Positives = 983/1149 (85%), Gaps = 19/1149 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS-- 178
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQ
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQRDV 180
Query: 179 ---------------LNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVG 223
LNWQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVG
Sbjct: 181 ICMNNNVNIQIGNAPLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVG 240
Query: 224 PIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGF 283
PIPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + F
Sbjct: 241 PIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAF 300
Query: 284 LKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL 343
LKHPRTPT +DYQSADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR L
Sbjct: 301 LKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNL 360
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
NQGSNVMS+DFHP QQTILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL
Sbjct: 361 NQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAAL 420
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
+ DAAISVNRC+W PDG +LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+H
Sbjct: 421 MKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSH 480
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
PNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKI
Sbjct: 481 PNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKI 540
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
KAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY
Sbjct: 541 KAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTY 600
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+E
Sbjct: 601 NGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNRE 660
Query: 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703
GSLLAVT ++NGIKILAN+DG RLLRMLE RA + +R P + I++KP +N LG SNVS
Sbjct: 661 GSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVS 720
Query: 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763
+ +A ERPDR P VS+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++A
Sbjct: 721 SPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRA 780
Query: 764 LRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 823
LR+PD+ A S VVRL+YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQ
Sbjct: 781 LRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQ 840
Query: 824 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 883
P +G LM ND ++ P EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPP
Sbjct: 841 PANGILMANDTSDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPP 899
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
AATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSS
Sbjct: 900 AATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSS 959
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003
GADAQLC WSID WEK KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+
Sbjct: 960 GADAQLCAWSIDGWEKKKSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDA 1019
Query: 1004 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI- 1062
KLEC RSWSP++ALPAPISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYI
Sbjct: 1020 KLECLRSWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIP 1079
Query: 1063 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNS 1122
P+ + + +P+V+A HP EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S
Sbjct: 1080 PSMSSGGSVYPMVVAAHPLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTIS 1139
Query: 1123 SNPPLTGQP 1131
+ P +P
Sbjct: 1140 AAPAAANKP 1148
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304555573|ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1| ramosa 1 enhancer locus 2 [Zea mays] gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2 [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer locus2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1836 bits (4756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1134 (76%), Positives = 980/1134 (86%), Gaps = 7/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL G IPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPL-GSIPKSAGFPPMGAHAPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQ + FLKHPRTPT G+DYQS
Sbjct: 240 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQT
Sbjct: 300 ADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI++WEVGSRER+AHK FKVWDI + ++PLQ +L+ DAA+SVNRC+W PDG
Sbjct: 360 ILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCTLPLQASLMKDAAVSVNRCLWSPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P G+LRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 420 TILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSKEG+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILA
Sbjct: 600 NRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASPRLRFNREGSLLAVTTSDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP I ALGP SNVS+ IA ERPDR PAV
Sbjct: 660 NTDGQRLLRMLESRAFEGSRGPPQQINTKP-PIVALGPVSNVSSPIAVNAERPDRILPAV 718
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780
S S L +D SR DVKPR+ ++ +K+K+W++ DI D ++AL L D+ +VRL+
Sbjct: 719 STSGLAPMDASRTPDVKPRITDESEKVKTWKLADIVDNGHLRALHLTDTDTNPSKIVRLL 778
Query: 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840
YTN+G++LLAL SNAVHKLWKWQR++RNPSGK+TA+VAP LWQP +G LMTND N+ P
Sbjct: 779 YTNNGVALLALGSNAVHKLWKWQRSDRNPSGKSTASVAPHLWQPANGILMTNDTNDGNP- 837
Query: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 900
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 838 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 897
Query: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 960
GMEDS++QIYNVR+D+VK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 898 GMEDSTIQIYNVRIDDVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 957
Query: 961 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1020
KSR+IQ PA R LVG+T+VQFHNDQTHLLVVHESQ+ +YD L+C R WSP+DALPAP
Sbjct: 958 KSRYIQPPANRPGTLVGDTRVQFHNDQTHLLVVHESQLGIYDGNLDCLRLWSPRDALPAP 1017
Query: 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP--TYAVSNTAHPLVIAP 1078
ISSAIYSCDGLLVYAGFCDGAIGVF+AE+LR RCRI PSAYIP A + +PLV+A
Sbjct: 1018 ISSAIYSCDGLLVYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSILACAGRVYPLVVAA 1077
Query: 1079 HPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPS 1132
HP EPNQIA+GMSDG VHVVEP D + KWG P QDNG P +P ++ PS
Sbjct: 1078 HPMEPNQIAIGMSDGKVHVVEPLDGDPKWGSAPPQDNGAHP--HPHPAISAAPS 1129
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078279|ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] gi|241940258|gb|EES13403.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1788 bits (4630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/1092 (77%), Positives = 948/1092 (86%), Gaps = 4/1092 (0%)
Query: 27 KLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALD 86
+LEQESGF+FNMKHFED VQ GEWDEVE+YL GFTKVEDNRYSMKIFFEIRKQKYLEALD
Sbjct: 25 RLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 84
Query: 87 RQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVE 146
R DRAKAVEILVKDLKVF+SFNEELFKEITQLLTL+NFRQNEQLSKYGDTKSARNIML+E
Sbjct: 85 RHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLE 144
Query: 147 LKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNP 206
LKKLIEANPLFRDKL+FP FK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSC
Sbjct: 145 LKKLIEANPLFRDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAA 204
Query: 207 TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPS 266
+NGAR PPP N PLVG IPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH +
Sbjct: 205 PTNGARAPPPANGPLVGSIPKSAGFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAA 264
Query: 267 MAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHT 326
+A GPPG VQ + FLKHPRTPT G+DYQSADS+HLMKR+R GQ DEVSF+G +H
Sbjct: 265 VAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHP 324
Query: 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386
N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQTILLVGTNVGDI++WEVGSRER+AHK
Sbjct: 325 ANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKT 384
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
FKVWDI + ++PLQ +L+ DAAISVNRC+W PDG +LGVAFSKHIV YT+ P G+LRQ
Sbjct: 385 FKVWDIGSCTLPLQASLMKDAAISVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQ 444
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH
Sbjct: 445 AEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPH 504
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSKEG+
Sbjct: 505 YKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGD 564
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626
SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT
Sbjct: 565 SHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTT 624
Query: 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686
D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILAN+DG RLLRMLE RA + +R P + I
Sbjct: 625 DCDGGLPASPRLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQI 684
Query: 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746
++KP I ALGP SNVS+ IA ERPDR PAVS S L +D SR DVKPR+ ++ +K
Sbjct: 685 NTKP-PIVALGPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDPSRTPDVKPRITDESEK 743
Query: 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806
+K+W++ DI D ++AL L D+ VVRL+YTN+G++LLAL SNAVHKLWKWQR +
Sbjct: 744 VKTWKLADIVDNGHLRALHLTDTDTNPSKVVRLLYTNNGIALLALGSNAVHKLWKWQRGD 803
Query: 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 866
RNPSGK+TA+VAP LWQP +G LMTND N+ P EE+ ACIALSKNDSYVMSASGGKVSL
Sbjct: 804 RNPSGKSTASVAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSL 862
Query: 867 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 926
FNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVR+D+VK+KLKGHQ
Sbjct: 863 FNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRIDDVKSKLKGHQK 922
Query: 927 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986
+ITGLAFS ++N LVSSGADAQLC+WSID WEK KSR+IQ PA R LVG+T+VQFHND
Sbjct: 923 KITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKKKSRYIQPPANRPGTLVGDTRVQFHND 982
Query: 987 QTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
QTHLLVVHESQ+++YD LEC RSWSP+DALPAPISSAIYSCDGLLVYA FCDGAIGVF+
Sbjct: 983 QTHLLVVHESQLAIYDGNLECLRSWSPRDALPAPISSAIYSCDGLLVYAAFCDGAIGVFE 1042
Query: 1047 AETLRFRCRIGPSAYIP--TYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104
AE+LR RCRI PSAYIP A + +PLV+A HP EPNQIALGMSDG VHVVEP D +
Sbjct: 1043 AESLRLRCRIAPSAYIPPSILACAGRVYPLVVAAHPMEPNQIALGMSDGKVHVVEPLDGD 1102
Query: 1105 LKWGGTPSQDNG 1116
KWG P QDNG
Sbjct: 1103 PKWGTAPPQDNG 1114
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168031165|ref|XP_001768092.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680730|gb|EDQ67164.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1666 bits (4314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1161 (71%), Positives = 941/1161 (81%), Gaps = 35/1161 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ+GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQSGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPPTNNPLVG +PK G FPP+ H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPTNNPLVGGLPKQGAFPPLTTHSPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS A+AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 240 QPA-PPSASALAGWMANPNPPAPHAPVANGPAALTAPPNSATLLKRPRTPPSTTPTVDYQ 298
Query: 300 SADSDHLMKRIRTG-----QSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
SADS+HLMKR R G ++ V+ G +H N S DDL K V R+LNQGS VMSMDF
Sbjct: 299 SADSEHLMKRARPGIQSVDEAKTVNCVGPSHPQNNVSPDDLPKNVARSLNQGSCVMSMDF 358
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP Q +ILLVGTNVGDI +WEVGSR+RLA + FKVWDI+AASMP+Q AL+ D A+SVNR
Sbjct: 359 HPIQLSILLVGTNVGDIGIWEVGSRDRLAQRTFKVWDITAASMPMQAALVKDPAVSVNRT 418
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
VW PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCG
Sbjct: 419 VWNPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCG 478
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSR
Sbjct: 479 DDKTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSR 538
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVV
Sbjct: 539 VDYDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSSGVV 598
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNKEGSLLAVT+SDN
Sbjct: 599 QFDTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKEGSLLAVTSSDN 658
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
GIKILAN DG+++LR LE RA D NR P EP SKP N LG S +RP+
Sbjct: 659 GIKILANRDGMQMLRALEARAYDTNRAPPEPAVSKPPVGNTLGVVSTPGGGGG---DRPN 715
Query: 715 RGPPAVSISSLGTI--------------------DGSRLVDVKPRVAEDV-DKIKSWRIP 753
A S+ T+ +G R + KPR+ +D+ D+ KSW++
Sbjct: 716 SSSMAGSVMDGPTLNMGGSRVRPRDRVGNDHSGMEGGRTPETKPRIPDDIPDRSKSWKLT 775
Query: 754 DISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 813
+I++ +Q + +RLPDS+ +K V RLIYTN+G++LLALASNAVHKLWKWQR ERN SGKA
Sbjct: 776 EITEQNQCRTIRLPDSLPPNK-VARLIYTNAGVALLALASNAVHKLWKWQRNERNVSGKA 834
Query: 814 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 873
TA+V PQLWQP SG LMTNDI+E+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 835 TASVTPQLWQPASGILMTNDISETNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFK 893
Query: 874 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 933
VMT FM PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAF
Sbjct: 894 VMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAF 953
Query: 934 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993
S TLN LVSSGADAQLCMW D WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVV
Sbjct: 954 SNTLNVLVSSGADAQLCMWGTDGWEKKKSKFVQVQPGGRSPSIGDTRVQFHNDQVRLLVV 1013
Query: 994 HESQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1052
HESQ++VYD SKL+ R W P++ PA IS+A YSCD L+YAGF DG++GVFDAE+LR
Sbjct: 1014 HESQLAVYDASKLDRLRQWVPQNPFPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRP 1073
Query: 1053 RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1112
RCR+ P+ ++P+ +T +PLVIA HP+EPNQ ALG+SDG V V+EP ++E KWG P
Sbjct: 1074 RCRLAPTVHVPSGVSGSTVYPLVIAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPP 1133
Query: 1113 QDNGPLPSNSSNPPLTGQPSE 1133
DNG S P Q S+
Sbjct: 1134 ADNGTASGVPSGPASGNQGSD 1154
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168060004|ref|XP_001781989.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666562|gb|EDQ53213.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1648 bits (4268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1139 (71%), Positives = 929/1139 (81%), Gaps = 47/1139 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQGGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPP NNPLVG IPK G FP +G H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPANNPLVGGIPKQGAFP-LGTHSPF 238
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS ++AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 239 QPA-PPSASSLAGWMANPNPPAPHAPVANGPAALTAPPNSAALLKRPRTPPSTTPTVDYQ 297
Query: 300 SADSDHLMKRIRTG-QS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
SADS+HLMKR R G QS DEV G +H N S DDL K+V R+LNQGS VMSMDFHP
Sbjct: 298 SADSEHLMKRARPGVQSVDEVFVPGGTSHPQNNVSPDDLPKSVARSLNQGSCVMSMDFHP 357
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
QQ++LLVGTNVGDI +WEVGSRE+LA + FKVWDI+AASMP+Q AL+ D A+SVNR VW
Sbjct: 358 IQQSVLLVGTNVGDIGIWEVGSREKLAQRTFKVWDITAASMPMQAALVKDPAVSVNRTVW 417
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCGDD
Sbjct: 418 NPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDD 477
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 478 KTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRVD 537
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVVQF
Sbjct: 538 YDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSAGVVQF 597
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNK+GSLLAVTTSDNGI
Sbjct: 598 DTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKDGSLLAVTTSDNGI 657
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN DG+++LR LE RA D NR P EP SK
Sbjct: 658 KILANRDGMQMLRALEARAYDTNRVPPEPAVSK--------------------------- 690
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKV 775
++G R + KPR+ +++ D+ KSW++ +I++ +Q + +RLPDS+ +K
Sbjct: 691 ---------SGMEGGRTPETKPRIPDEIPDRSKSWKLTEITEQNQCRTIRLPDSLPPNK- 740
Query: 776 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 835
V RLIYTN+G++LLALASNAVHKLWKWQR ERN +GKATA+V+PQLWQP SG LMTNDI+
Sbjct: 741 VARLIYTNAGVALLALASNAVHKLWKWQRNERNINGKATASVSPQLWQPASGILMTNDIS 800
Query: 836 ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 895
E+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM PPPAATFLAFHPQDN
Sbjct: 801 ETNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATFLAFHPQDN 859
Query: 896 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955
NIIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS TLN LVSSGADAQLCMW D
Sbjct: 860 NIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFSNTLNVLVSSGADAQLCMWGTD 919
Query: 956 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPK 1014
WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVHESQ++VY+ +KL+ R W P+
Sbjct: 920 GWEKRKSKFVQVQPGGRSPSMGDTRVQFHNDQVRLLVVHESQLAVYEAAKLDRLRQWVPQ 979
Query: 1015 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPL 1074
+ PA IS+A YSCD L+YAGF DG++GVFDAE+LR RCR+ PS +IP +T +PL
Sbjct: 980 NPFPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRPRCRLAPSVHIPPGVSGSTVYPL 1039
Query: 1075 VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
VIA HP+EPNQ ALG+SDG V V+EP ++E KWG P DNG S P Q S+
Sbjct: 1040 VIAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPPADNGTASGVPSGPASGNQGSD 1098
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1135 | ||||||
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.965 | 0.969 | 0.659 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.958 | 0.961 | 0.644 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.614 | 0.622 | 0.706 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.311 | 0.477 | 0.381 | 1.2e-89 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.459 | 0.381 | 0.246 | 6.4e-22 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.139 | 0.298 | 0.294 | 5.7e-18 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.170 | 0.306 | 0.266 | 3.3e-12 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.213 | 0.419 | 0.274 | 7.1e-12 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.163 | 0.315 | 0.246 | 1.5e-10 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.173 | 0.588 | 0.259 | 1.9e-10 |
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3862 (1364.6 bits), Expect = 0., P = 0.
Identities = 745/1130 (65%), Positives = 877/1130 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR KAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPP-NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + SE SSKP IN++ A+ AA A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENIS-------SE--SSKP-AINSIAAAA---AAAAT 704
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 705 SAGHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 827
+++ +K+ RLI+T +H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKIS-RLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG 822
Query: 828 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATF
Sbjct: 823 ILMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 881
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 947
LAFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADA
Sbjct: 882 LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADA 941
Query: 948 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLE 1006
QLC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y++ KLE
Sbjct: 942 QLCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLE 1001
Query: 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1066
C + W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P
Sbjct: 1002 CMKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASL 1060
Query: 1067 VSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1116
++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1061 SNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3684 (1301.9 bits), Expect = 0., P = 0.
Identities = 721/1118 (64%), Positives = 868/1118 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHG-P 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR + F P+G HG P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLPVAAVA-RPSNFVPLGVHGGP 238
Query: 240 FQ--PVVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ P +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA--SLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD+ +G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWDL-SGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIGK-IEHMD 706
Query: 715 RGPPAVSISSLGTIDG-SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773
G PA I+ SR ++ KPR + VDK K + +I DP+Q + + +PDS +
Sbjct: 707 AGSPARPTPIPNGIEAMSRTME-KPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSV 765
Query: 774 KVVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 833
V RL+YT V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND
Sbjct: 766 SKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMAND 825
Query: 834 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 893
+ E+ P E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQ
Sbjct: 826 VPEN-P-EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 883
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
DNNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 884 DNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWT 943
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWS 1012
D WEK KS IQ P G+ +P VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W
Sbjct: 944 ADSWEKKKSSAIQLPPGK-AP-VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWV 1001
Query: 1013 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA- 1071
P++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P N+A
Sbjct: 1002 PQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQ-PTPNSAP 1060
Query: 1072 -HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1061 IFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2622 (928.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 505/715 (70%), Positives = 577/715 (80%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR KA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNR--CPSEPISSKPLTINALGPASN 701
V+ +DN IK++ANSDG+RLL +E + + ++ S P+ +P ++ ++ P N
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSI-PGMN 711
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 141/370 (38%), Positives = 208/370 (56%)
Query: 754 DISDPSQIKALRLPDSIAASKVVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKA 813
+I DPSQ AL LPD + K+ RL Y+ HKLW W ++ N K
Sbjct: 371 EIKDPSQCNALVLPDCFSEEKIA-RLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFCKE 428
Query: 814 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 873
P+L QP SG M N++ S ++S +C A+ SY+ S SGGK+++F++ F+
Sbjct: 429 NVYPKPRLHQPQSGKTMENEMATS--VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFE 484
Query: 874 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 933
+ F SP P AT+ F P D ++A+G++D S+ I+ + +VK KL+GH +IT LAF
Sbjct: 485 KVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAF 542
Query: 934 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE---TKVQFHNDQTHL 990
S N LVSS +D +LC+WS W KL S+ +S L T +QF Q L
Sbjct: 543 SRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIEL 602
Query: 991 LVVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
LVVH+ I +Y+ + L+C W P + PA I+SA YS DG ++Y GF G+I + D++T
Sbjct: 603 LVVHDGWIGLYEVRTLDCRLQWIPDASDPA-ITSATYSSDGEIIYVGFRCGSIKIVDSKT 661
Query: 1050 LRFRCRIGPSAY--IPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107
C+I +++ + T +S +P V+A HPS PNQI+ G+S+G V V++P + W
Sbjct: 662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSG-GW 720
Query: 1108 G-GTPSQDNG 1116
G P +DNG
Sbjct: 721 GEAAPLEDNG 730
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 144/585 (24%), Positives = 244/585 (41%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD + + LQ L+ + +V + PDG +L + + L+ + TGEL Q
Sbjct: 775 KIWDPATGEL-LQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
E H + +AFA K+L + DD IK+WD+ G Q T + H V SV
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVA--F 884
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + S+++D IK W + + W +A+S DG +L S G+ K +
Sbjct: 885 SPDGKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK---N 940
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
+ WN + G + +T G +S+ V F + ++ + IK W+ + T
Sbjct: 941 TVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGELQQTFK 999
Query: 628 A-DGGLPASPRLRFNKEGSLLAVTTSDNGIKI--LANSDGVRLLRMLEGRAMDKNRCPSE 684
D + A + F+ +G L + DN IK+ LA S+ L + LE + +
Sbjct: 1000 GHDLWIRA---VAFSPDGKHLVSGSDDNTIKLWDLATSE---LQQSLEDHSRSVHAVAFS 1053
Query: 685 PISSKPLTINALGPA----SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740
P K L ++L + + + TLE +G +V+ S G + S D
Sbjct: 1054 P-DDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPDGKLLASNSYD----- 1107
Query: 741 AEDVDKIKSWRIPDISDPSQIKALRLP--DSIAAS---KVVVRLIYTXXXXXXXXXXXXX 795
IK W P + Q R DS+A S K + Y
Sbjct: 1108 ----GTIKLWN-PLTGELQQTLTGRSDWVDSVAFSPDGKQLASGYYDSTIKLWDSATGEL 1162
Query: 796 VHKLW----KWQRTERNPSGKATANVA----PQLWQPPSGTLMTNDINESKPTEESAACI 847
+ L + Q +P GK A+ + +LW P +G L+ SK E +
Sbjct: 1163 LQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSKWVES----V 1218
Query: 848 ALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 906
A S + + S+S G+ + L++ +T +++ P +A +AF P N + ++ + D+
Sbjct: 1219 AFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVDIFDT- 1277
Query: 907 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 951
+I++ E+ LKGH + +S T A +S D LC+
Sbjct: 1278 -KIWDPATGELLQALKGHSKWV----WSRT-GAGISIFLDQWLCL 1316
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 5.7e-18, Sum P(3) = 5.7e-18
Identities = 56/190 (29%), Positives = 88/190 (46%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KHFEDQVQAGEWDEVERYLCGF 60
S++++ LILQFL E ++ L++E+G N + F + V+ G WD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
T V R S + ++ +Q +E L K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LDNFRQNEQLS-----KYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLI 175
L+N Q E + KYG T R K+LIE L + ++ PS SRL +L+
Sbjct: 125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173
Query: 176 NQSLNWQ-HQ 184
+QSL+WQ HQ
Sbjct: 174 SQSLHWQKHQ 183
|
|
| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 58/218 (26%), Positives = 99/218 (45%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKHFEDQVQAGEWDEVERYLCGFT 61
++E++ LI Q+L + ++V L ESG + + F + V G+W + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVEDNRYSMKIF---FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L +L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQH-NITRVHQLSSY 215
Query: 119 LTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSS--RLRTLIN 176
+ + Q +K+ + K + LV +++L P PS S RLRTL+
Sbjct: 216 MMCSTNQDLYQRAKW-EGKGILSRALV-MERLQTFMP--------PSVMMSPRRLRTLLQ 265
Query: 177 QS--LNWQHQLCKNPRPNPDIKT--LFTDHSCNPTSNG 210
Q+ L QH C + +++T L TDH C T++G
Sbjct: 266 QAVELQSQHCPCHDMAWETNLETVSLLTDHCC--TTDG 301
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD S LQ+ L + + V ++ D +L A S V ++ TG L QH
Sbjct: 321 KIWDTETGS--LQHTLEGHSDL-VRSVIFSHDSRLLASA-SDSTVKIWDTG-TGSL-QHT 374
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
++ H V + F+H + QL + + DD +K+WD G Q+T EGH V SV H
Sbjct: 375 -LEGHRDWVRSVIFSH-DSQL-LASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSH 431
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 565
Q + S + D +K W D + + G+ W + +S D +RL + S
Sbjct: 432 DS--QLLASASDDSTVKIW--DTGTGSLQHTLEGHRDWVRSVIFSHD-SRLLA---SASD 483
Query: 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625
+ + W+ +G+ K T G + V F +A ++ ++ WD++ ++ T
Sbjct: 484 DRTVRIWDTEKGSHKHTLEG-HSSLVTSVSFSHDSRLLASASNDQTVRIWDIEARSLQHT 542
Query: 626 VDADGGLPASPRLRFNKEGSL-LAVT 650
D D + A +RF+K SL + VT
Sbjct: 543 FDLDATIEA---MRFDKATSLWIQVT 565
|
|
| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 50/203 (24%), Positives = 94/203 (46%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYL--CGFT 61
E V +I + L + +T LE+ESG + +K F QV+ G+WD+ + L GF
Sbjct: 67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126
Query: 62 KVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL 121
D + F + +QK+LE L + A A+ L ++ + + + + L++
Sbjct: 127 ---DEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISP 183
Query: 122 DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNW 181
+F + + ++ ++R+ +L EL+ L+ A+ + +K RL L+ SL+
Sbjct: 184 SSFISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHI 234
Query: 182 QHQLCKNPRPNPDIKTLFTDHSC 204
Q C +L++DH C
Sbjct: 235 QRDSCVFHNTLDSDLSLYSDHQC 257
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 55/212 (25%), Positives = 106/212 (50%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
S++ + PDG L A + + ++ Y+ G+ + LE H G++DIA++ +K +
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYD--GKFERTLE--GHKEGISDIAWSQDSKLI 103
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C + DDK IK+WDV +G+ T +GH+ V+ V + + ++ I S + D ++ W
Sbjct: 104 C--SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV 159
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
+ A + T + ++ DGT + S G S +G + W+ + G + T S
Sbjct: 160 NTGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTEDG 215
Query: 589 RSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDN 619
+ + V+F + +F+ AG + ++ W +N
Sbjct: 216 KEVSFVKF-SPNGKFVLAGTLDNTLRLWSYNN 246
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.6734 | 0.9656 | 0.9690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1135 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 4e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 336 TKTVVRTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA 394
T VRTL S V S+ F P + IL + I +W+V + + L
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCL------------ 128
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
L VN + PDG + + + L+ TG+ + H G
Sbjct: 129 -------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVA--TLTGHTG 178
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
VN +AF+ ++L + D IK+WD+ G+ T GHE V SV +
Sbjct: 179 EVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--YLL 234
Query: 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSK 563
S + DG I+ W D G N T +A+S DG RL S
Sbjct: 235 ASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 3e-22
Identities = 66/296 (22%), Positives = 108/296 (36%), Gaps = 46/296 (15%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALL 404
V + F P + + + G I +W++ + E L H V D++A L
Sbjct: 12 VTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHT-GPVRDVAA--SADGTYLA 67
Query: 405 ---NDAAISV-----NRCVW---GPDGLMLGVAFSKHI-----------VHLYTYNPTGE 442
+D I + CV G + VAFS + ++ TG+
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-VETGK 126
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+ H VN +AF P+ + + D IK+WD+ G+ T GH V S
Sbjct: 127 CLT--TLRGHTDWVNSVAF-SPDGTF-VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560
V + S++ DG IK L+D + G N +A+S DG L S
Sbjct: 183 VAFSPDGE--KLLSSSSDGTIK--LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238
Query: 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+ + W+ G +T SG + + + R + + I+ WD
Sbjct: 239 ----EDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 19/266 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V + PDG +L + ++ TGEL + L+ H G V D+A + L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLK--GHTGPVRDVAASADGTYL- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+ DK I++WD+ G T GH + V SV I + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI--LSSSSRDKTIKVWDVE 123
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 588
+W +A+S DGT + S S++G L W+ G T +G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASS--SQDGTIKL--WDLRTGKCVATLTGHTGE 179
Query: 589 -RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
S V F + L++ + IK WD+ L T+ S + F+ +G LL
Sbjct: 180 VNS---VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLL 234
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEG 673
A + D I++ + ++ L G
Sbjct: 235 ASGSEDGTIRVW-DLRTGECVQTLSG 259
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.1 bits (214), Expect = 1e-17
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 27/310 (8%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ S+ F P + +LL G++ G I LW++ + E+L +L
Sbjct: 68 ITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHD 109
Query: 409 ISVNRCVWG-PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV++ PDG + +A S + ++ + + ++ H V +AF P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGK 168
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L D IK+WD+ G+ T GH PV S+ + I S + DG I+ W
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWD 227
Query: 528 YDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
G + G+ + ++S DG+ L S S +G L W+ +
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASG--SSDGTIRL--WDLRSSSSLLRTLSG 282
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
S+ V F + + ++ WD++ +L+++ G L F+ +GSL
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 647 LAVTTSDNGI 656
L SD+G
Sbjct: 343 LVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 19/209 (9%)
Query: 846 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 904
C+A S + + + SG G + ++++ T +++ +A + + D
Sbjct: 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-D 72
Query: 905 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 964
+++++++ E L GH + ++ +AFSP L SS D + +W ++ +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKC 127
Query: 965 IQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPA---P 1020
+ G + V F D T + + I ++D R+ L
Sbjct: 128 LTTLRGHTDWV---NSVAFSPDGTFVASSSQDGTIKLWD-----LRTGKCVATLTGHTGE 179
Query: 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++S +S DG + + DG I ++D T
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (186), Expect = 3e-14
Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 43/339 (12%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA---- 383
++ K + +V S+ F P + + + G I LW++ + + L+
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 384 HKPF-----------------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
H ++WD+S L++ L + V+ + PDG
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSVVS--SFSPDG 253
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+L S + L+ + L + L H V +AF P+ +L + D ++
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAF-SPDGKLLA-SGSSDGTVR 309
Query: 481 VWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+WD+ G+ T +GHE PV S+ + + + DG I+ W +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
+ +++S DG + S T + W+ S G++ R G R + F
Sbjct: 369 G-HSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSLLRNLDGHTSRVT-SLDFSP 422
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
+ + I+ WD+ + DG + AS
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 54/232 (23%)
Query: 846 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 904
+A S + + S+S + ++++ T K +T +AF P D +A +D
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156
Query: 905 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 964
+++++++R + L GH + +AFSP L+SS +D + +W +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------- 209
Query: 965 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSA 1024
L HE+ + S ++SP
Sbjct: 210 ---------------------KCLGTLRGHENGV--------NSVAFSP----------- 229
Query: 1025 IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSNTAHPLV 1075
DG L+ +G DG I V+D T + G + + + A S L
Sbjct: 230 ----DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 4e-14
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISL 373
++ +G + + D T + TL V S+ F P ++ G++ G I L
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 374 WEVGSRERLAH--------------------------KPFKVWDISAASMPLQNALLNDA 407
W++ + + L ++WD+ ++S L+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV + PDG +L S V L+ TG+L L + H G V+ ++F P+
Sbjct: 286 --SVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSF-SPDGS 341
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L + DD I++WD+ G+ T EGH V SV + ST DG ++ W
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWD 398
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563
+ D + T + +S DG L S +
Sbjct: 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-12
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 FFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAK 92
F K + + G+WDE +L R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (169), Expect = 4e-12
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 11/236 (4%)
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEG-HEAP 499
L + H + IAF P+ +L +++ D IK+WD+ G K + EG H++
Sbjct: 54 PDLSSLLLRGHEDSITSIAF-SPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111
Query: 500 VYSVCPHHKESIQFI-FSTAIDGKIKAW-LYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557
V + + + S+++DG +K W L + T +A+S DG L
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171
Query: 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617
S + + W+ G T +G + + + I+ WD+
Sbjct: 172 SGSSLD---GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+L + + G S F+ +GSLLA +SD I++ LLR L G
Sbjct: 229 STGKLLRSTLS--GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (166), Expect = 9e-12
Identities = 54/265 (20%), Positives = 110/265 (41%), Gaps = 17/265 (6%)
Query: 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLFNMMT-FKVMTM 877
LW +G + + + S ++ +S ++++S G V L+++ T K++
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 878 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 937
+ T LAF P + + D +++++++R + + L GH + ++ LAFSP
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 938 N-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE- 995
+ S +D + +W + + L+S G +V F D + L
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLS----GHSDSVVSS----FSPDGSLLASGSSD 262
Query: 996 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC- 1054
I ++D + S + + + S +S DG L+ +G DG + ++D ET +
Sbjct: 263 GTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321
Query: 1055 --RIGPSAYIPTYAVSNTAHPLVIA 1077
G + + + S LV
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSG 346
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (145), Expect = 3e-09
Identities = 48/256 (18%), Positives = 105/256 (41%), Gaps = 22/256 (8%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMF 878
+LW +G L+ + ++ + + S + S + S S G + L+++ + +
Sbjct: 224 RLWDLSTGKLLRSTLSG----HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279
Query: 879 MSPPPAATF-LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSP 935
+S ++ +AF P + + D +V+++++ ++ LKGH+ ++ L+FSP
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338
Query: 936 TLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL-LVV 993
+ LVS G+ D + +W + + LK+ V F D +
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH---------SNVLSVSFSPDGRVVSSGS 389
Query: 994 HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1053
+ + ++D D + ++S +S DG + +G D I ++D +T
Sbjct: 390 TDGTVRLWDLSTGSLL--RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
Query: 1054 CRIGPSAYIPTYAVSN 1069
P + S+
Sbjct: 448 VSFSPDGKVLASKSSD 463
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 980
LKGH +T +AFSP L + D + +W ++ E L++ G P+
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPV---RD 56
Query: 981 VQFHNDQTHLLVVHE-SQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1038
V D T+L I ++D EC R+ + + +SS +S DG ++ +
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT---SYVSSVAFSPDGRILSSSSR 113
Query: 1039 DGAIGVFDAET 1049
D I V+D ET
Sbjct: 114 DKTIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.9 bits (133), Expect = 8e-08
Identities = 85/397 (21%), Positives = 153/397 (38%), Gaps = 52/397 (13%)
Query: 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS 652
+ F L+ + IK WD+DN L +++ S + +G+ + + +S
Sbjct: 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130
Query: 653 --DNGIKILANSDGVRLLRMLEG--------------------RAMDKNRCPSEPISSKP 690
D +K+ S +L+R LEG ++D + + KP
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI------DGSRLVDVKPRVAEDV 744
L+ A S A +P D G S SS GTI G L ++ V
Sbjct: 191 LSTLAGHTDPVSSLAFSP-----DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQR 804
S ++ S +RL D ++S ++ + S+L++A + KL
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLL---- 299
Query: 805 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--G 862
SG + V LW T K E + ++ S + S ++S G
Sbjct: 300 ----ASGSSDGTVR--LWD--LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351
Query: 863 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 922
+ L+++ T K + ++F P D +++ G D +V+++++ + L
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 923 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 959
GH +R+T L FSP +L S +D + +W + K
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW---LYDYLGSRVDYDAPGNWCTMMA 548
T +GH V V + + + + DG IK W + L + + P A
Sbjct: 4 TLKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV---A 58
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
SADGT L S + K + W+ G RT +G V F ++
Sbjct: 59 ASADGTYLASGSSDKT----IRLWDLETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSR 113
Query: 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668
+ IK WD++ LTT+ S + F+ +G+ +A ++ D IK+ + + +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVASSSQDGTIKL-WDLRTGKCV 170
Query: 669 RMLEG 673
L G
Sbjct: 171 ATLTG 175
|
Length = 289 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
EL LIL++L ++ET L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 1e-05
Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 20/242 (8%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 947
+ ++ + DS V + ++ L+GH++ IT +AFSP L+S +D
Sbjct: 32 SLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 948 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE- 1006
+ +W +D + I++ G V + + + + LL +V L
Sbjct: 88 TIKLWDLDN----GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143
Query: 1007 CSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1065
+ + ++S +S DG LL DG I ++D T + +
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL--------- 194
Query: 1066 AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1125
+T +A P IA G SDG + + + S +L + + S S +
Sbjct: 195 -AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG 253
Query: 1126 PL 1127
L
Sbjct: 254 SL 255
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
E+ LKGH +T +AFSP L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ L + + DD ++VWD
Sbjct: 6 TLKGHTGPVTSVAF-SPDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
++ LKGH +T +AFSP N L S D + +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ + + + DD IK+WD
Sbjct: 7 TLKGHTGPVTSVAF-SPDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
G+ T +GH PV SV + S + DG ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQL 130
+ FE+R Q+++E + +A+E ++L F FNE+ KEI +L+ L F
Sbjct: 37 NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94
Query: 131 SKYGD 135
S Y
Sbjct: 95 SPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1135 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.69 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.62 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.61 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.59 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.58 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.46 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.43 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.42 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.41 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.41 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.4 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.39 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.39 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.35 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.33 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.33 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.32 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.32 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.32 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.24 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.19 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.17 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.15 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.09 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.08 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.02 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.99 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.86 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.82 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.82 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.81 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.74 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.74 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.73 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.73 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.72 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.7 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.7 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.7 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.68 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.66 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.66 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.63 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.59 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.58 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.57 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.56 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.55 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.53 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.53 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.52 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.48 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.46 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.45 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.42 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.42 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.4 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.4 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.38 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.37 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.31 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.29 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.25 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.21 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.21 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.13 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.11 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.08 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.06 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.01 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.01 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.01 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.0 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.99 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.98 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.93 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.89 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.88 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.86 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.85 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.82 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.8 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.77 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.73 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.66 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.61 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.61 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.58 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.57 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.56 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.54 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.47 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.47 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.46 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.4 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.37 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.36 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.32 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.31 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.31 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.18 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.18 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.14 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.14 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.11 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 97.09 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.06 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.05 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.0 | |
| PRK10115 | 686 | protease 2; Provisional | 96.98 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.88 | |
| PRK10115 | 686 | protease 2; Provisional | 96.85 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.77 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.7 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 96.69 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.68 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.68 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.63 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.59 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.55 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.49 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.49 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.42 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.41 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.39 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.37 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.36 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.33 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.32 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.31 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.29 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.25 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.2 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.02 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.96 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.95 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.85 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.85 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.78 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.76 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.76 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.75 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.74 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.73 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.65 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.46 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.43 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.16 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.91 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.82 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.68 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.46 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.24 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.22 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.22 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.18 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.83 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.82 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.68 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.49 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.44 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.41 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.35 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.28 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.03 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.5 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.42 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 92.14 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.09 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.83 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 91.83 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 91.6 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.36 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.27 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.17 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.84 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 90.61 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.44 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.04 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.0 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.77 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 89.73 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 89.65 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.52 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.27 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 89.17 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.15 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.01 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.82 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.41 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.25 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 88.22 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.9 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 87.82 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.55 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 87.11 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.1 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 86.33 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 86.28 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.2 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.03 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 85.8 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.67 | |
| PLN02153 | 341 | epithiospecifier protein | 85.51 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.35 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 85.25 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.81 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.67 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 84.34 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 84.23 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 84.22 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 83.74 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 83.51 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 82.48 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 82.01 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 82.0 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.91 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 81.68 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 81.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 80.45 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 80.39 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.2 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=523.43 Aligned_cols=490 Identities=20% Similarity=0.309 Sum_probs=408.4
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHH
Q 001159 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1135)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 81 (1135)
+-|++||++|+|..+||.+|+.+||.|||+.++ .+.|.++++.|+|+.++..+... .++++.-.+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999988777 34445556789999999999
Q ss_pred HHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcc-cCccchhhhccCCCchhHHHHHHHHHHhhcccCcccccc
Q 001159 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL-DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (1135)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1135)
||++..|....|+.+||+.+.++ .++.+++++|+.-+.. .++..++... -......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999999 6799999999765554 4443444322 113467899999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 001159 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240 (1135)
Q Consensus 161 ~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f 240 (1135)
+|++||+.||+||+.||+++|+|||+ .+..+|+.||.|++ .++ |. .+.+++.+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~---- 222 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQD---- 222 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhh----
Confidence 99999999999999999999999994 56689999999999 222 22 22223333
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCccccCCcchhHHHhhcccCCcceeee
Q 001159 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 320 (1135)
Q Consensus 241 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 320 (1135)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchh
Q 001159 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1135)
Q Consensus 321 s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1135)
|.++|+.+.||++|+ +||+++.|.+..||++..-..+. +
T Consensus 223 ------------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l----------- 261 (519)
T KOG0293|consen 223 ------------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----L----------- 261 (519)
T ss_pred ------------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----e-----------
Confidence 455899999999998 79999999999999986544321 1
Q ss_pred hhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 401 ~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
...+.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 11277999999999999999999999999999999999998765332 24567899999999999 799999999999
Q ss_pred EEEcCCCeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 481 VWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.||+ +|..+..+++-. ..|.++++.++ |+++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.
T Consensus 338 ~wdl-Dgn~~~~W~gvr~~~v~dlait~D--gk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDL-DGNILGNWEGVRDPKVHDLAITYD--GKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EecC-CcchhhcccccccceeEEEEEcCC--CcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEE
Confidence 9995 556666666644 56899998764 5899999999999999988765553 33456689999999999999887
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCc-eeEEEec-CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRS-LGVVQFD-TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~i~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
-. +..+++||++....++.+.||..+. +-.-||. .+..++++|++|+.|+||+..+++++.++.+|.. .|++
T Consensus 414 L~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNc 487 (519)
T KOG0293|consen 414 LQ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNC 487 (519)
T ss_pred cc----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeE
Confidence 64 7789999999999999999998743 2223444 3558899999999999999999999999998865 7999
Q ss_pred EEEcC-CCCEEEEEECCCcEEEEEcCC
Q 001159 638 LRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 638 ~~~~~-~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++|+| +..++|++++||+|+||....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999 678999999999999998753
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=466.04 Aligned_cols=489 Identities=19% Similarity=0.295 Sum_probs=408.8
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHH
Q 001159 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1135)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~ 80 (1135)
+.||||||.|||+|+.++++.++||+|.++.++ +..|.+.|.+|+||.++..+++| +++.+-+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 568999999999999999999999999999998 88999999999999999999998 66777889999999
Q ss_pred HHHHHhccCHHHHHHHHHhc--cccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCcccc
Q 001159 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1135)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1135)
.|||++.++...|+.+||+- +.-++..++++|-+|+.||..+.++..|.+.+ .+.++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999974 55566678999999999999999998887654 34566667777777654443
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHhhCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001159 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1135)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 237 (1135)
+||+||..||+|||+||.++++.| |+.. +||.+-...+
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 899999999999999999999987 3332 4443222111
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCccccCCcchhHHHhhcccCCcce
Q 001159 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1135)
Q Consensus 238 ~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1135)
+ .++|.+|......|+|++.+.
T Consensus 194 -~-------------------~~Ee~~Pt~l~r~IKFg~KSh-------------------------------------- 215 (508)
T KOG0275|consen 194 -D-------------------QEEERYPTQLARSIKFGQKSH-------------------------------------- 215 (508)
T ss_pred -h-------------------hHhhhchHHhhhheecccccc--------------------------------------
Confidence 1 244555666666666665554
Q ss_pred eeecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeeccccccc
Q 001159 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1135)
Q Consensus 318 v~~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1135)
+-|..|||||+ +|++|+.||.|.+|++.+|+....-.+.
T Consensus 216 -------------------------------~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ--------- 254 (508)
T KOG0275|consen 216 -------------------------------VECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------- 254 (508)
T ss_pred -------------------------------hhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh---------
Confidence 45889999998 7999999999999999999876432221
Q ss_pred chhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 398 ~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
....+.-+...|.|+.||.|...||+|+.||.|++|.+.+|.+++..- .+|...|+|+.|+.|+. .+++++.|.
T Consensus 255 --Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~ 328 (508)
T KOG0275|consen 255 --AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQ 328 (508)
T ss_pred --hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccc
Confidence 111245688999999999999999999999999999999999887432 38999999999999999 689999999
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC--CcEEEEEEcCCC-C
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADG-T 554 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~-~ 554 (1135)
++++.-+.+|++++.|+||...|+...|.+ +|..+++++.||+|++|+..+.++..++...+ ..|.++..-|.+ .
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 999999999999999999999999999976 45899999999999999999999988776543 477787777744 5
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeeccc--CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
.+++|. ..++|++.++. |+.+++|.... ++..-+.+.+|.|.++++.++|+.++.+.+.+|+...++..|..
T Consensus 407 h~iVCN----rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk- 480 (508)
T KOG0275|consen 407 HFIVCN----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK- 480 (508)
T ss_pred eEEEEc----CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc-
Confidence 677774 36789999875 88888887543 23466678999999999999999999999999999999988755
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.|..++-+|..+.+|+-+.||.+++|.
T Consensus 481 -dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=485.31 Aligned_cols=572 Identities=15% Similarity=0.235 Sum_probs=477.2
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCcccc-ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
++|+++|+ +|++... ..|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 6777654 36888899988762 21 1234567899999999999999999999
Q ss_pred eEEEEEeCCCCceeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC
Q 001159 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1135)
.+++|++++++.++ .+.. |++||.-++|+|.+. .+++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
+...|++|..|+++++||+.+... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 777899999999999999996554 6788899999999999999999999986 8899999998877777776654
Q ss_pred CceeEEEecCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 589 ~~v~~i~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.+.++.+-++ +.+++++|.+|.+++||..+++.+......... .+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE-EIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch-hhhcceeccccCceEEEEccceEEEEEccc
Confidence 4667777776 679999999999999999999887766544322 366666666666677778888999999887
Q ss_pred CchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 001159 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
. ++.+.+.|....
T Consensus 313 l-~i~k~ivG~ndE------------------------------------------------------------------ 325 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDE------------------------------------------------------------------ 325 (775)
T ss_pred c-EEehhhcCCchh------------------------------------------------------------------
Confidence 7 555555554332
Q ss_pred cccccccccCCcCCccceeEeecCCcccccceEEEEEE-ecCCcceeEecccceeeeEEeccccCCCCCcccccccCeee
Q 001159 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIY-TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 822 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 822 (1135)
| ..+.| .|+.+.+++++..+.+++|++.+..
T Consensus 326 -------------------------------I-~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---------------- 357 (775)
T KOG0319|consen 326 -------------------------------I-LDMKFLGPEESHLAVATNSPELRLYTLPTSY---------------- 357 (775)
T ss_pred -------------------------------h-eeeeecCCccceEEEEeCCCceEEEecCCCc----------------
Confidence 2 44443 4566778899999999999654321
Q ss_pred cCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc----cEEEEEeCCCCCeEEEEEecCCCcE
Q 001159 823 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNI 897 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~ 897 (1135)
.. .+.+ | ...|.++....+|-+|++|+ |.++++|.+..+ -++....+|.+.|.+++++..+..+
T Consensus 358 ------c~--ii~G--H-~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 358 ------CQ--IIPG--H-TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred ------eE--EEeC--c-hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 11 2444 8 99999999888889999999 999999988443 3456678899999999998866789
Q ss_pred EEEEeCCCcEEEEEccccee---------eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 898 IAIGMEDSSVQIYNVRVDEV---------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 898 lasg~~dg~v~iwd~~~~~~---------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
|++++.|+++++|++...+. ......|...|++++++|+.+++||||.|++.+||+++... .+..+
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vL 501 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVL 501 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-----EEEEe
Confidence 99999999999999986221 11235799999999999999999999999999999999654 56778
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
.||. .+|.++.|+|..+.+++ ++|.+|+||.+ ++.|+.++ .+|...|..+.|-.+|+.|++++.||-|++|+
T Consensus 502 sGH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 502 SGHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eCCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 8988 79999999999999999 68999999999 99999887 46699999999999999999999999999999
Q ss_pred CCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1047 AETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
+.++++++++..|. ..+-+++-++ ...+++||+.||.|.+|.=.+.
T Consensus 576 ikt~eC~~tlD~H~----------DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 576 IKTNECEMTLDAHN----------DRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccchhhhhhhhhcc----------ceeEEEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 99999999999774 4455666666 5579999999999999975543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-56 Score=473.25 Aligned_cols=568 Identities=16% Similarity=0.229 Sum_probs=466.3
Q ss_pred eeecCCCCCCccccCCC------cceee-EEeec--CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCce
Q 001159 318 VSFAGVAHTPNVYSQDD------LTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 388 (1135)
Q Consensus 318 v~~s~~g~~~~~~~~d~------~~~~~-~~~~~--h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~ 388 (1135)
++++++|+.+.....+. .++.. +.... ..+.+++++.+||++ .|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 78888898887765543 34444 33333 567899999999998 688899999999999999977653
Q ss_pred eecccccccchhhhhccC-CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCe
Q 001159 389 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1135)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~ 467 (1135)
.+. |+++|.-++|+|.|.+||+|+.|+.+++||+..+.+.. .|.||.+.|.++.|.|+-.+
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 233 99999999999999999999999999999999987665 89999999999999998876
Q ss_pred EEEEEEcCCCcEEEEEcCCCe-eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEE
Q 001159 468 LCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 546 (1135)
..|++|+.|+++++||+.+.. +++++..|.+.|++++|.+++ ..+++++.|..|.+||+...+....+... ..+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~--~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS--LELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCC--ceEEEeccCcEEEEeehhhhhhhheechh-hheee
Confidence 678999999999999999554 488999999999999998864 89999999999999999665555444332 24556
Q ss_pred EEEcCC-----CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 547 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+.+-++ +.+++++|. ++.+++||..+++.+..........+..+...+....++..+.|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 666665 668888874 88999999999988766554433345555555556677777788999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEc-CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcc
Q 001159 622 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 700 (1135)
....+-+... .|..+.|- |+.++|++++..+.+++++..+.. +. .+.+
T Consensus 315 i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~-c~-ii~G--------------------------- 363 (775)
T KOG0319|consen 315 IVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSY-CQ-IIPG--------------------------- 363 (775)
T ss_pred EehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCc-eE-EEeC---------------------------
Confidence 9888876544 68888774 688999999999999999876652 11 2233
Q ss_pred ccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEE
Q 001159 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
|...| .++.
T Consensus 364 ----------------------------------------------------------------------H~e~v-lSL~ 372 (775)
T KOG0319|consen 364 ----------------------------------------------------------------------HTEAV-LSLD 372 (775)
T ss_pred ----------------------------------------------------------------------chhhe-eeee
Confidence 44555 7777
Q ss_pred EecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCC-CEEEEE
Q 001159 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-SYVMSA 859 (1135)
Q Consensus 781 ~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg-~~la~~ 859 (1135)
...+|.+|++++.|.++++|.++.+. +..... ..+.+| .+.|.+++++..+ .+++++
T Consensus 373 ~~~~g~llat~sKD~svilWr~~~~~-------------------~~~~~~--a~~~gH-~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 373 VWSSGDLLATGSKDKSVILWRLNNNC-------------------SKSLCV--AQANGH-TNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred ecccCcEEEEecCCceEEEEEecCCc-------------------chhhhh--hhhccc-ccccceeeecccCccEEEEe
Confidence 77788889999999999999873211 111111 122348 9999999998755 478888
Q ss_pred e-CCeEEEEECCCccE-----E----EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeE
Q 001159 860 S-GGKVSLFNMMTFKV-----M----TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 929 (1135)
Q Consensus 860 ~-dg~i~vwd~~~~~~-----~----~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 929 (1135)
+ |.++++|++...+. . .+...|...|+|++++| +.+++|||+.|++.+||+++..+...+|.||...|+
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw 509 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW 509 (775)
T ss_pred cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceE
Confidence 8 99999999976221 1 12346999999999999 889999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCce
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLEC 1007 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~ 1007 (1135)
++.|+|.++.|+|+|.|++|+||.+++.. +++.+.||. ..|..+.|-.+|+.|++ ++||-+++|++ +..|
T Consensus 510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~---~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 510 CVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT---SAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred EEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc---ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999999999999999999999988 677889998 78999999999999999 68999999999 8888
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
...+ +.|...|++++.++++.+++||+.||.|.+|.=.|.+
T Consensus 582 ~~tl---D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 582 EMTL---DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhhh---hhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 8775 6679999999999999999999999999999876643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=412.87 Aligned_cols=570 Identities=14% Similarity=0.193 Sum_probs=439.7
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~ 431 (1135)
+.-.|.|+.++.+.+ ..|.+-++++..... ++.+|...++-..|||.|-|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 445677877887654 478888888765432 37789999999999999999999999999
Q ss_pred EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC
Q 001159 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1135)
|+|||....+.+ ...+++...++|.+++|+.|+++ |+..+ .++..+++-..+|..+-.+.||...|+++.|-|..
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 999998774433 22366778899999999999995 44443 44444444445888889999999999999999887
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee---cc
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GF 586 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~ 586 (1135)
. -.+++|+.|++|.+|+=...+-...+..|..-|.|+.|+|||.++++++. |+.+.+||-.+|+.+..+. +|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 6 68999999999999975555555567778889999999999999999986 8899999999999999998 67
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC-CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+-+|+|.+++...+
T Consensus 235 kG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~- 310 (603)
T KOG0318|consen 235 KG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP- 310 (603)
T ss_pred cc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-
Confidence 76 8999999999999999999999999999999999999765431 122344554 568999999999999998887
Q ss_pred hhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccc
Q 001159 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1135)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1135)
...+.+.+
T Consensus 311 ~~~~~i~G------------------------------------------------------------------------ 318 (603)
T KOG0318|consen 311 SVLKVISG------------------------------------------------------------------------ 318 (603)
T ss_pred Chhheecc------------------------------------------------------------------------
Confidence 35555555
Q ss_pred cccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCC
Q 001159 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 825 (1135)
Q Consensus 746 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1135)
|...| +++..++|+++|++++.||.|.-|+...+
T Consensus 319 -------------------------HnK~I-TaLtv~~d~~~i~SgsyDG~I~~W~~~~g-------------------- 352 (603)
T KOG0318|consen 319 -------------------------HNKSI-TALTVSPDGKTIYSGSYDGHINSWDSGSG-------------------- 352 (603)
T ss_pred -------------------------cccce-eEEEEcCCCCEEEeeccCceEEEEecCCc--------------------
Confidence 44556 99999999999999999999999975432
Q ss_pred CCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEE--EeCCCCCeEEEEEecCCCcEEEEEeC
Q 001159 826 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGME 903 (1135)
Q Consensus 826 ~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~lasg~~ 903 (1135)
..- .+.+..| ...|.+++-+..+.++.+|-|.++++.++.....-.. ++-.. .-.+++..+ ++.+++.++.
T Consensus 353 --~~~--~~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~~~ 425 (603)
T KOG0318|consen 353 --TSD--RLAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVACI 425 (603)
T ss_pred --ccc--ccccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEEec
Confidence 211 1333348 9999999999888888888899999999865433222 22122 233888888 6666666665
Q ss_pred CCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEE
Q 001159 904 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 904 dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
++.+.+=|.. .+.... -.-...++|++|++..++.|+.|+.|.||.+...+......... |. ++++++++
T Consensus 426 ~~iv~l~~~~---~~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vay 495 (603)
T KOG0318|consen 426 SDIVLLQDQT---KVSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAY 495 (603)
T ss_pred CcEEEEecCC---cceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEEEE
Confidence 5544443332 222222 33457899999999999999999999999999876433222222 22 68999999
Q ss_pred CCCCcEEEEE-ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceec
Q 001159 984 HNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1062 (1135)
Q Consensus 984 s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~ 1062 (1135)
|||+.|||++ ..+.|.+||+..+.... ..-.-|.+.|.+++|||+.+++|+|+.|.+|.||+++.....-.+.
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----- 569 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----- 569 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----
Confidence 9999999997 57899999994444322 2223368999999999999999999999999999999765443332
Q ss_pred cccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1063 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.+|...+ ..+.|- |+..|++.+.|..|++|++.
T Consensus 570 --nAH~~gV--n~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 570 --NAHLGGV--NSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred --cccccCc--eeEEEe--cCceEEeccCcceeEEeccc
Confidence 2233334 456665 56899999999999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=415.96 Aligned_cols=552 Identities=16% Similarity=0.203 Sum_probs=431.5
Q ss_pred CCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 323 VAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 323 ~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+|+.+.+...+.... .....+|...++-..|||.|- ++|+|...|.|+|||....+.+...+
T Consensus 37 nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne---------------- 98 (603)
T KOG0318|consen 37 NGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE---------------- 98 (603)
T ss_pred CCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee----------------
Confidence 344444444444333 333345899999999999996 89999999999999988755443322
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..-.++|..++|++|+++|++.+.- |.+.+||. |..+. ++.||...|.+++|-|.... .++||++|++
T Consensus 99 -f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~ 171 (603)
T KOG0318|consen 99 -FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS--GNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNT 171 (603)
T ss_pred -eeecccccccceeCCCCcEEEEEecCccceeEEEEecC--CCccc---eeeccceeEeeeeccCCCce-EEEeccCCCe
Confidence 33456889999999999999887652 34666664 44444 78899999999999987765 8999999999
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec---CCCCcEEEEEEcCCCCE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~ 555 (1135)
|.+|+=.-.+-..+++.|..-|.++.|+|+ |.++++++.||+|.+||=.+++.+..+. +|.+.|.+++|+||+..
T Consensus 172 v~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 172 VAFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred EEEeeCCCeeeeecccccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence 999997666777788899999999999986 4899999999999999999999888887 88999999999999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccC--CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+++++. |.++++||+.+.++++++..... ...-.+-|. +..|++.+.+|+|.+++......+..+.+|..
T Consensus 250 ~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-- 321 (603)
T KOG0318|consen 250 FLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-- 321 (603)
T ss_pred EEEecC----CceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--
Confidence 999986 88899999999999999875443 122234454 57899999999999999999999999998855
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 713 (1135)
.|+++..++++++|.+|+.||.|.-|+..++......-++|...+..
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~--------------------------------- 368 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG--------------------------------- 368 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE---------------------------------
Confidence 89999999999999999999999999998884332222445444331
Q ss_pred CCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc
Q 001159 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~ 793 (1135)
......+.++.++.|+++++.++......... .+.+ ..+. .+++..+++..+++.+.
T Consensus 369 ----------------~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~-~~~l-----g~QP-~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 369 ----------------MAASESGELFTIGWDDTLRVISLKDNGYTKSE-VVKL-----GSQP-KGLAVLSDGGTAVVACI 425 (603)
T ss_pred ----------------EeecCCCcEEEEecCCeEEEEecccCcccccc-eeec-----CCCc-eeEEEcCCCCEEEEEec
Confidence 12223467888899999999887543222211 0111 1222 78888888876666655
Q ss_pred cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc
Q 001159 794 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF 872 (1135)
Q Consensus 794 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~ 872 (1135)
++.+.+=+.. + +.. .. - .....++|++|+++.+|+|+ |+.|+||.+...
T Consensus 426 ~~iv~l~~~~-----------------------~-~~~--~~---~-~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 426 SDIVLLQDQT-----------------------K-VSS--IP---I-GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred CcEEEEecCC-----------------------c-cee--ec---c-ccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 5444332111 1 111 11 1 56678999999999999999 999999999876
Q ss_pred cEE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE-ecCcCCCeEEEEEcCCCCeEEEEcCCCcE
Q 001159 873 KVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQL 949 (1135)
Q Consensus 873 ~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i 949 (1135)
.+. ..+..|.++|++++||| |+.+||+|...+.|.+||+.+.+.... +.-|..+|.+|+|+|+.+++|||+-|.+|
T Consensus 476 ~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred cccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 543 34566999999999999 999999999999999999998876433 44599999999999999999999999999
Q ss_pred EEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 950 CMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 950 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
.||+++.... .+.....|. ..|+.+.|-.+...+-++.|..|++|.+
T Consensus 555 iiysv~kP~~----~i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 555 IIYSVKKPAK----HIIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEEccChhh----heEeccccc---cCceeEEEecCceEEeccCcceeEEecc
Confidence 9999997653 244455565 5699999998888777799999999986
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=425.53 Aligned_cols=568 Identities=16% Similarity=0.240 Sum_probs=439.2
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+.+...|++++.||+|. +|++....|...+-++.....++... -+.+|.|+.|||||++
T Consensus 52 ~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~~ 110 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGKF 110 (893)
T ss_pred eecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCcE
Confidence 34788999999999997 66667888888888887766655321 3567999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCc-----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee--eeeecC
Q 001159 423 LGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK--QYTFEG 495 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~ 495 (1135)
+|+|.. +.+.||....... .....++.+|-..|+++.|+.|.+ +|++|+.|.++++|+++..+- .+.+.+
T Consensus 111 fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~g 187 (893)
T KOG0291|consen 111 FAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNG 187 (893)
T ss_pred EEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccC
Confidence 999865 5699999875432 223346678999999999999999 999999999999999987665 567889
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-----------------------CCc-----------eeEecCCC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----------------------LGS-----------RVDYDAPG 541 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-----------------------~~~-----------~~~~~~~~ 541 (1135)
|.+.|.+.-|..+. ..+++.+.||.+.+|.... ++. ..-+....
T Consensus 188 Hkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 188 HKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred CCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 99999998886654 7899999999999997661 111 00112233
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC-CCeEEEEECCCC
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDNM 620 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iwd~~~~ 620 (1135)
..+++.+|++..+.|+++-. .|.+.++.+....+++.+.-... .|..++|+..|.+++.|+. -|.+-+|+..+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 67899999999999998875 77899999999999999987766 8999999999999999774 489999999887
Q ss_pred ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcc
Q 001159 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 700 (1135)
.-+...++| ...+++++++|||+++|+|++||.|+|||...+ -++.+|..
T Consensus 341 sYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFte--------------------------- 390 (893)
T KOG0291|consen 341 SYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTE--------------------------- 390 (893)
T ss_pred ceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEecc---------------------------
Confidence 666665555 558999999999999999999999999999888 44444433
Q ss_pred ccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEE
Q 001159 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
|+..| +.+.
T Consensus 391 ----------------------------------------------------------------------Hts~V-t~v~ 399 (893)
T KOG0291|consen 391 ----------------------------------------------------------------------HTSGV-TAVQ 399 (893)
T ss_pred ----------------------------------------------------------------------CCCce-EEEE
Confidence 55556 9999
Q ss_pred EecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe
Q 001159 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 860 (1135)
Q Consensus 781 ~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~ 860 (1135)
|+..|+.+++.+-||+++.||+... ...+... . +.+....|++..|.|..+..|+
T Consensus 400 f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft-~--P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 400 FTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFT-S--PEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeec-C--CCceeeeEEEEcCCCCEEEeec
Confidence 9999999999999999999987531 1111111 1 1156678999999999999998
Q ss_pred -C-CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEcCCC
Q 001159 861 -G-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTL 937 (1135)
Q Consensus 861 -d-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~ 937 (1135)
| -.|.||++++|+++-.+.||.++|.+++|+| .+..||+|++|.+|++||+-.. ..+.++. +...+.+++|+|||
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDG 532 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCC
Confidence 5 5699999999999999999999999999999 8999999999999999998755 3345555 66779999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCC
Q 001159 938 NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL 1017 (1135)
Q Consensus 938 ~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h 1017 (1135)
+.|+++..||.|.+||++.+... ....|.. =..++... ...+ .......
T Consensus 533 ~elaVaTldgqItf~d~~~~~q~-----~~Idgrk-----------------D~~~gR~~-------~D~~--ta~~sa~ 581 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAVQV-----GSIDGRK-----------------DLSGGRKE-------TDRI--TAENSAK 581 (893)
T ss_pred CeEEEEEecceEEEEEhhhceee-----ccccchh-----------------hccccccc-------ccee--ehhhccc
Confidence 99999999999999999876532 1122211 00000000 0000 0011122
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceec-----------------------------------
Q 001159 1018 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI----------------------------------- 1062 (1135)
Q Consensus 1018 ~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~----------------------------------- 1062 (1135)
....+++++|+||.++++|+..+.|++|++.++-++..++.....
T Consensus 582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~ 661 (893)
T KOG0291|consen 582 GKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRID 661 (893)
T ss_pred CCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccccc
Confidence 568899999999999999999999999999999888776532211
Q ss_pred ---cc--------cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1063 ---PT--------YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1063 ---~~--------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
|. .-.-..+.+..+.|+| .|+-++.++..| |.||.+.+
T Consensus 662 ~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 662 IALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred ccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 00 0000135677999999 567788777766 45666644
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=421.64 Aligned_cols=587 Identities=13% Similarity=0.212 Sum_probs=448.2
Q ss_pred cCCcceeeecCCCCCCccccCCC-------cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccccc
Q 001159 312 TGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384 (1135)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~~d~-------~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~ 384 (1135)
...+.+++.||+|..+....-.+ .....++.+.-+.+|.|++|||||+ ++|+|. .+.+.||.......-.-
T Consensus 55 ~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~ 132 (893)
T KOG0291|consen 55 RYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEF 132 (893)
T ss_pred CCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhccc
Confidence 34788999999998776654443 2445566677789999999999998 566654 56899999765332111
Q ss_pred CCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC
Q 001159 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP 464 (1135)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d 464 (1135)
.+|. ....+.+|...|.++.||.|.++|++|+.|-++++|+++..+.+. ...+.+|...|.++-|..+
T Consensus 133 ~pFv-----------l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~ 200 (893)
T KOG0291|consen 133 NPFV-----------LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGAN 200 (893)
T ss_pred Ccce-----------EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccC
Confidence 1121 223377899999999999999999999999999999999877643 3478899999999999999
Q ss_pred CCeEEEEEEcCCCcEEEEEcCC-----------------------Cee-----------eeeecCCCCCeeEEEeeccCC
Q 001159 465 NKQLCIVTCGDDKMIKVWDVVA-----------------------GRK-----------QYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 465 ~~~~~l~s~~~d~~i~iwd~~~-----------------------~~~-----------~~~~~~h~~~v~~i~~~~~~~ 510 (1135)
.. -++|.+.||.+.+|.... ++. .+-+......|++.+||+..
T Consensus 201 ~~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t- 277 (893)
T KOG0291|consen 201 SL--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT- 277 (893)
T ss_pred cc--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-
Confidence 88 799999999999998651 111 01122234789999999876
Q ss_pred ccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc
Q 001159 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
+.|++|-..|...+|.+.....+..+......|..++|+..|.+|+.++. +-|++.+|+.++...+....+|.. .
T Consensus 278 -~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~ 352 (893)
T KOG0291|consen 278 -NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-R 352 (893)
T ss_pred -eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-c
Confidence 79999999999999999999999999988999999999999999999874 478999999999999999999988 8
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhh
Q 001159 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 591 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 670 (1135)
+.+++++|||+++++|++||+|+|||..++-++.++..|.. .|+.+.|+..|+.+++.+-||+|+.||+... ..+++
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRT 429 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRT 429 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeee
Confidence 99999999999999999999999999999999999997755 8999999999999999999999999999877 44444
Q ss_pred ccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccccc
Q 001159 671 LEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSW 750 (1135)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw 750 (1135)
+....
T Consensus 430 ft~P~--------------------------------------------------------------------------- 434 (893)
T KOG0291|consen 430 FTSPE--------------------------------------------------------------------------- 434 (893)
T ss_pred ecCCC---------------------------------------------------------------------------
Confidence 43211
Q ss_pred ccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccc-eeeeEEeccccCCCCCcccccccCeeecCCCCcc
Q 001159 751 RIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 829 (1135)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1135)
.-+. .+++..|.|..+++|+.|. .|. +|+.++|++
T Consensus 435 ---------------------p~Qf-scvavD~sGelV~AG~~d~F~If----------------------vWS~qTGql 470 (893)
T KOG0291|consen 435 ---------------------PIQF-SCVAVDPSGELVCAGAQDSFEIF----------------------VWSVQTGQL 470 (893)
T ss_pred ---------------------ceee-eEEEEcCCCCEEEeeccceEEEE----------------------EEEeecCee
Confidence 1111 8899999999888887763 344 456667776
Q ss_pred eeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc-EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 830 MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 830 ~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
+.. +.| | +++|.+++|+|+|..||+++ |.+|++||+-+.. .+.++. +...+..++|+| +|+.||+++-||.|
T Consensus 471 lDi-LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqI 544 (893)
T KOG0291|consen 471 LDI-LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQI 544 (893)
T ss_pred eeh-hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceE
Confidence 653 555 8 99999999999999999999 9999999986543 444454 778999999999 99999999999999
Q ss_pred EEEEcccceeeEEec--------------------CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeec
Q 001159 908 QIYNVRVDEVKTKLK--------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 967 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~--------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 967 (1135)
.+||...+..+..+. ......+.+++|+||+.+++||....|.+|++.++-.++...+..
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecc
Confidence 999988665443221 123568999999999999999999999999999987665443322
Q ss_pred CCCCCCCCCCceEEEECCCCcEEEE-E----ecCeEEE-------EecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEE
Q 001159 968 PAGRQSPLVGETKVQFHNDQTHLLV-V----HESQISV-------YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYA 1035 (1135)
Q Consensus 968 ~~~~~~~~~~v~~~~~s~dg~~l~~-~----~d~~v~v-------wd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~ 1035 (1135)
...-.........=.+.+-|.+-.+ . -++.|-+ +|+..+ .+.+ .-.|.++.|||.|+-+|+
T Consensus 625 N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR---r~rp----eIrv~sv~fsPtgraFAa 697 (893)
T KOG0291|consen 625 NRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR---RFRP----EIRVTSVQFSPTGRAFAA 697 (893)
T ss_pred ccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCcccc---ccCc----eEEEEEEEECCCcCeeee
Confidence 2111100011122223333333222 1 0111111 111111 0000 235789999999999999
Q ss_pred EeCCCeEEEEECCCceeeeee
Q 001159 1036 GFCDGAIGVFDAETLRFRCRI 1056 (1135)
Q Consensus 1036 ~~~dg~I~vwd~~~~~~~~~~ 1056 (1135)
++..| +.||.+++.-...-+
T Consensus 698 atTEG-l~IYsld~~~~FDPf 717 (893)
T KOG0291|consen 698 ATTEG-LLIYSLDTTILFDPF 717 (893)
T ss_pred ecccc-eEEEecCCceEEccc
Confidence 98887 678988876554433
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=420.97 Aligned_cols=505 Identities=14% Similarity=0.274 Sum_probs=406.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
....+|+|+.-+|+.. +||+|..||.|+||+..++..+.+ +.||...|+++.|...|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3456899999999996 799999999999999998765543 78999999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
|+||.|+.|.+||+-....+. .+.||+..|+.+-|..+.+ ++++.+.|+.|++||+.+..|..+...|.+.|+++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998765443 7899999999999998666 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCce-------------eEecCCCCcEEEEEEcCCCCEEEEEecCC-------
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-------------VDYDAPGNWCTMMAYSADGTRLFSCGTSK------- 563 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-------------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------- 563 (1135)
++++ +.+++++.|+.+++|++...... .......++...++..++++++++-+.++
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI 273 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRI 273 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheee
Confidence 9976 68999999999999988211000 00011111222233333333333332200
Q ss_pred -------------------------------------------------------------------CCCCeEEEEECCC
Q 001159 564 -------------------------------------------------------------------EGESHLVEWNESE 576 (1135)
Q Consensus 564 -------------------------------------------------------------------~~~~~i~~wd~~~ 576 (1135)
-.++.+..|.+..
T Consensus 274 ~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 274 RSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN 353 (888)
T ss_pred cCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc
Confidence 0134455555443
Q ss_pred -CeE--------EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE
Q 001159 577 -GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 577 -~~~--------~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 647 (1135)
+.. ...+.+|.. .|++++++.+...+++|+ .+.+++|+..+.+++.++... .+.+..|-|.++++
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 111 134556666 899999998876666664 568999999999999999754 67899999999999
Q ss_pred EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 001159 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++|...|.+.+||+... .+...++.
T Consensus 428 v~G~k~Gel~vfdlaS~-~l~Eti~A------------------------------------------------------ 452 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA-SLVETIRA------------------------------------------------------ 452 (888)
T ss_pred EEeccCCceEEEEeehh-hhhhhhhc------------------------------------------------------
Confidence 99999999999999877 45544443
Q ss_pred CCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccC
Q 001159 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~ 807 (1135)
|.+.| .+++.+||++.+++++.|.+|++|++.....
T Consensus 453 -------------------------------------------HdgaI-Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 453 -------------------------------------------HDGAI-WSISLSPDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred -------------------------------------------cccce-eeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence 44555 8999999999999999999999999865332
Q ss_pred CCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeE
Q 001159 808 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 886 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~ 886 (1135)
.+..+ . ++........ +.- ...|.|+.+||||++||++- |.+|+||-+++.+....+.||.=+|.
T Consensus 489 ~~gt~-~-----k~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 489 VPGTQ-K-----KVLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL 554 (888)
T ss_pred cCccc-c-----eeeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccccee
Confidence 11110 0 0011111111 111 78899999999999999998 99999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeee
Q 001159 887 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 966 (1135)
Q Consensus 887 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 966 (1135)
||.+|| |+++++||+.|.+|++|-++-|.|.+.+-+|.+.|.++.|-|+...+.|+|.|+.|+-||-+.-+ .++
T Consensus 555 smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-----~iq 628 (888)
T KOG0306|consen 555 SMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-----EIQ 628 (888)
T ss_pred EEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----hhe
Confidence 999999 99999999999999999999999999999999999999999999999999999999999998876 677
Q ss_pred cCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCC
Q 001159 967 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL 1005 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~ 1005 (1135)
.+.+|. ..|.+++.+|+|.++++ ++|..|++|.-+.
T Consensus 629 ~L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 629 KLDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeccch---heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 788888 79999999999999999 6899999999843
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=418.07 Aligned_cols=577 Identities=15% Similarity=0.235 Sum_probs=443.1
Q ss_pred cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEE
Q 001159 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1135)
Q Consensus 356 p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iw 435 (1135)
..|+. +| ++....|.+||+.+|+.... + ........|+|+.-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr~-va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 35774 33 33455899999999954321 0 012344689999999999999999999999999
Q ss_pred EeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEE
Q 001159 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 436 d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1135)
+..++.... .+.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875443 7889999999999999999 89999999999999999988899999999999999887644 7999
Q ss_pred EEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC------------eEEEEe
Q 001159 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------------AIKRTY 583 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~ 583 (1135)
+.+.|+.|++||+++..+..+...|...++++++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 778999998210 011112
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE--------EeCC------------------------CC
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT--------VDAD------------------------GG 631 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~------------------------~~ 631 (1135)
.....+..-.+...++++++++-+.|..+.++.+.+.+.+.. .+.+ ..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 111111333466677788999989999999999876432110 0000 00
Q ss_pred CCCcceEEEcCCCC---EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCC
Q 001159 632 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 708 (1135)
...+.++.|.|.+. .|+. -.++++..+.+...... . +
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~-~-----p--------------------------------- 359 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKT-S-----P--------------------------------- 359 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCC-C-----c---------------------------------
Confidence 12345566655432 2222 44556666655331000 0 0
Q ss_pred CCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcce
Q 001159 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSL 788 (1135)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l 788 (1135)
.+.....+.. .+|...| .+++++.|...+
T Consensus 360 ------------------------------------------------~~~~~~~i~~--~GHR~dV-Rsl~vS~d~~~~ 388 (888)
T KOG0306|consen 360 ------------------------------------------------EADRTSNIEI--GGHRSDV-RSLCVSSDSILL 388 (888)
T ss_pred ------------------------------------------------cccccceeee--ccchhhe-eEEEeecCceee
Confidence 0001111222 3488899 999999999855
Q ss_pred eEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEE
Q 001159 789 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLF 867 (1135)
Q Consensus 789 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vw 867 (1135)
+++ ..+.+++|+. .+...++... .+.+.+..|-|.++++++|. .|.+.||
T Consensus 389 ~Sg-a~~SikiWn~----------------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 389 ASG-AGESIKIWNR----------------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred eec-CCCcEEEEEc----------------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEE
Confidence 544 4567888854 3444444321 45788999999999999999 7999999
Q ss_pred ECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----ceeeEEec-------CcCCCeEEEEEcC
Q 001159 868 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSP 935 (1135)
Q Consensus 868 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~i~~l~~s~ 935 (1135)
|+.+..++.+.++|.+.|..++.+| |++.+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+||
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 9999999999999999999999999 899999999999999999651 21111121 1346799999999
Q ss_pred CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCC
Q 001159 936 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSP 1013 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~ 1013 (1135)
||++||.+=-|.+|+||-+++-+ ..-.+.||. .+|.++..|||++++++ +.|+.|+||-+ -|.|.+.+.
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f- 589 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF- 589 (888)
T ss_pred CCcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-
Confidence 99999999999999999999865 666788998 89999999999999999 58999999999 788887764
Q ss_pred CCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC
Q 001159 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1014 ~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 1093 (1135)
+|...|.++.|-|+..++.+++.|+.|+-||-+..+.+..+..|. .-+.|++-+| +|.+++|++.|.
T Consensus 590 --AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~----------~ev~cLav~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 590 --AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH----------SEVWCLAVSP-NGSFVVSSSHDK 656 (888)
T ss_pred --cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch----------heeeeeEEcC-CCCeEEeccCCc
Confidence 458999999999999999999999999999999999999888774 3345777788 788999999999
Q ss_pred cEEEEecCCCcccc
Q 001159 1094 AVHVVEPSDAELKW 1107 (1135)
Q Consensus 1094 ~v~~W~~~~~~~~~ 1107 (1135)
+|++|........+
T Consensus 657 sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 657 SIRLWERTDEILIL 670 (888)
T ss_pred eeEeeeccCcceee
Confidence 99999987644333
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=405.06 Aligned_cols=367 Identities=19% Similarity=0.302 Sum_probs=303.4
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .||+|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67999999999999999999999999999999999986655 8889999999999999999 899999999999999
Q ss_pred cCCCeee-eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 484 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
..+|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998766 6789999999999998743 236667788776
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
+||.++|||+..+.++..+.+|.. .|+|+.|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+.
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 388899999999999999999998 9999999865 4899999999999999999999999999987 789988876
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
|. .|-+|..|.+=+- .+.+.....
T Consensus 299 dy-~LRtgaf~~t~~~---------~~~~se~~~---------------------------------------------- 322 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRK---------PKSFSEEQK---------------------------------------------- 322 (480)
T ss_pred hh-hhhcccccccccc---------CCChHHHHH----------------------------------------------
Confidence 53 2223322211000 000000000
Q ss_pred cccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEe
Q 001159 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
..+.- ...+.-..+.++++++.|.++.+|+-
T Consensus 323 ----------------------~Al~r---------------------------Y~~~~~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 323 ----------------------KALER---------------------------YEAVLKDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred ----------------------HHHHH---------------------------HHHhhccCcceeEEecCCceEEEecc
Confidence 00000 11111223456999999999999953
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h 881 (1135)
.. .......+.+ | ..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|
T Consensus 354 ~~----------------------~kkpi~rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH 408 (480)
T KOG0271|consen 354 FK----------------------SKKPITRMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH 408 (480)
T ss_pred cc----------------------cccchhhhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence 21 1111112333 8 99999999999999999999 999999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd 953 (1135)
-..|..++|+. |.++|++|+.|.++++|++.+.++...|.||.+.|.++.|+|||+.+++++.|+.+++|.
T Consensus 409 v~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-50 Score=395.43 Aligned_cols=296 Identities=20% Similarity=0.347 Sum_probs=265.3
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 341 ~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.++. |.++|.|+.|+|+|+ .||+|+.|.++++||+.+..+..+ .++|..+|.|++||||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPD 168 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPD 168 (480)
T ss_pred cccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCC
Confidence 3444 899999999999998 689999999999999999877664 7899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec-----CCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+..++++..+.
T Consensus 169 gk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 169 GKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred cchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEec
Confidence 99999999999999999999987654 6889999999999965 455 89999999999999999999999999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEc-----------CCCC---------
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT--------- 554 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~~~~--------- 554 (1135)
+|+.+|+|+.|-.. .++++||.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 245 gHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 245 GHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred cCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 99999999999543 599999999999999999988899999999999999877 2233
Q ss_pred ----------------EEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 555 ----------------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 555 ----------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
.|++++. |.++.+|+... .+++....+|.. .|+.+.||||++++++++.|..|++|+.
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeC
Confidence 4888874 88999999864 457888999988 8999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
++|+.+.++.+|- ..|+.++|+.|.++|++|+.|.++++|++.+. ++...+
T Consensus 397 ~tGk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DL 447 (480)
T KOG0271|consen 397 RTGKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDL 447 (480)
T ss_pred CCcchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccC
Confidence 9999999999874 48999999999999999999999999999877 443333
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=368.29 Aligned_cols=625 Identities=12% Similarity=0.165 Sum_probs=406.7
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe--C
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 428 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~--~ 428 (1135)
.++-+|... ++|-- ..-.|.+||....+.-+ ++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAYP-AGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceeec-cCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence 455556554 33321 12378899987655432 3566888999999999999999984 6
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC--CCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
...+++|++.....+. ++..|+..|+|++|+|.++ ++++.+. |-.|.+||.+.......- .-...|..++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 7789999999877555 7889999999999999999 7887764 456778887755433222 245678888886
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCcee---EecCCCCcEEEEEEcCCCCEEEE-EecCCC--------CCCeEEEEEC
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS-CGTSKE--------GESHLVEWNE 574 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~-~~~~~~--------~~~~i~~wd~ 574 (1135)
. +|.++++.+ +..|++|.++..+... .+.+...-.-.+. +..++++ |+...- ..|.+.-+.
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEFS- 247 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEFS- 247 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeeec-
Confidence 5 558888766 6789999988665221 1111111111111 1112211 110000 012222221
Q ss_pred CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC----------------------CCC
Q 001159 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------GGL 632 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~ 632 (1135)
..+++..+-.-......||+.+ .++|++|+.+|.|++++..+..-+.++... ...
T Consensus 248 -sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 248 -SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred -hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 1111111111111134566666 579999999999999998876544444311 111
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh--hccccccccccCCCCCCCCCCcccccCCCccccccccCCCC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR--MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 710 (1135)
....++.|++....|.+...|..++|||+++-.+.-+ .+-.|..-+..+...+
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p------------------------- 379 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP------------------------- 379 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc-------------------------
Confidence 2335788999899999999999999999987633211 1112221111100000
Q ss_pred CCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeE
Q 001159 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLA 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~ 790 (1135)
...........|.+-++++++|++|++|++.........+. -.++.+-..++.
T Consensus 380 ------------~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR---------------Nils~~l~ki~y 432 (1080)
T KOG1408|consen 380 ------------CNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR---------------NILSANLSKIPY 432 (1080)
T ss_pred ------------ccccCcccccCCccceeEecCCCcEEEeecccccccceeec---------------ccchhhhhcCcc
Confidence 00001112223334444555555555555543111111000 000000000000
Q ss_pred ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEEC
Q 001159 791 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 869 (1135)
Q Consensus 791 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~ 869 (1135)
.|++..+. .....-++|..... ..+ . +..+.++++||+|++||+|+ .|.++||++
T Consensus 433 --~d~~~q~~--------------~d~~~~~fdka~~s-----~~d--~-r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 433 --EDSTQQIM--------------HDASAGIFDKALVS-----TCD--S-RFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred --ccCchhhh--------------hhccCCcccccchh-----hcC--c-ccceEEEEECCCcceecccCccCceEEEEe
Confidence 00000000 00000011111111 111 2 78899999999999999998 799999999
Q ss_pred CCccEEEEEeCCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEEccc-ceeeEEecCcCCCeEEEEEcCCC--CeEEEEc
Q 001159 870 MTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTL--NALVSSG 944 (1135)
Q Consensus 870 ~~~~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~i~~l~~s~d~--~~l~s~~ 944 (1135)
...+....+.+|..+|.|+.||.. ..++||+++.|..|.+||+.. ..+++++.+|+..|+++.|.-.| ..++++|
T Consensus 489 q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 489 QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc
Confidence 999999999999999999999842 357999999999999999874 46788999999999999998877 7899999
Q ss_pred CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEE
Q 001159 945 ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPIS 1022 (1135)
Q Consensus 945 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~ 1022 (1135)
.|+.|++--.+....- .+-....+......+..++..|..+++++ +.|+.|+||++ +++..+.|...++|.+...
T Consensus 569 ADksimFr~~qk~~~g---~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSG---RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred CchhhheehhccccCc---eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 9998876544321110 01001111111245788999999999999 78999999999 9999999999999988888
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1023 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1023 ~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.+...|.|-|||+...|+++.++|..+|+++.++.+|. -.++.+.|.+ |-+.|++.+.||.|++|.++.
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs----------E~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS----------EAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc----------hheeeeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999888663 4566899999 678999999999999999864
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=378.72 Aligned_cols=562 Identities=16% Similarity=0.223 Sum_probs=367.6
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--------HHHHH--------------------------HH--hh
Q 001159 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQ--VQ 46 (1135)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~--i~ 46 (1135)
..++++++++++||+..||+++.+.|.+|.++... ...+| .+ ..
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 34789999999999999999999999999874332 11111 00 01
Q ss_pred cccHHHH------HHHhcCCCcc-------cccchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHH
Q 001159 47 AGEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1135)
Q Consensus 47 ~g~w~~~------~~~l~~l~~~-------~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1135)
.-.|... +..-..|+.+ -..++. .++|+|+.|.||+|+.++....|..|+.+.--.++....+.+.
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 1111111 1111122221 122344 4999999999999999999999999999876666677888888
Q ss_pred HHHHhhcccCccchhhhccCCC----chhHHHHHHHHHHhhcccCcccccccCCCCCchHHHHHHHHHHHHHHHhhCCCC
Q 001159 114 EITQLLTLDNFRQNEQLSKYGD----TKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1135)
Q Consensus 114 ~l~~l~~~~~~~~~~~~~~~~~----~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~ 189 (1135)
+|..+-...++.+++....+.. ..-+|. .++.|.+++.+... +-..-+..+|+|++..++....+.
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~-s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~ 247 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSRD-SFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMA 247 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecHH-HHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccc
Confidence 9988888887877776655544 223332 23344444444332 224568889999988887655443
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCC----CCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 001159 190 RPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPP----IGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHP 265 (1135)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~f~~~~~~~~~~~~g~~~~~~~~~~~~ 265 (1135)
+.......+ ..|---...+..+.+.+--.-.++..++..+++. +..-.| -+.++-. ++-..+
T Consensus 248 r~~~~~~~~-~g~~~~~i~g~~~~e~~~~~~~l~~~~~e~~~~~~~~~~~e~~D---------~~~~~~~----~~~~~~ 313 (707)
T KOG0263|consen 248 RRTTKPTAM-VGSEQESIAGEAKREINKQKVQLGLLLKEEEIEKKLPILLEVED---------DPNEPDN----EKLKKP 313 (707)
T ss_pred cccccchhh-cccccccccccchhhcccceeeecccccchhhhhcccccccCcc---------ccccccc----cccccc
Confidence 210000000 0000000000011111100000111222111000 000000 0000000 000000
Q ss_pred CccCCCCCCCCCCcc-cccccCCCCCCCCCccccCCcchhHHHhhcccCCcceeeecCCCCCCccccCCCcceeeEEeec
Q 001159 266 SMAAGPPGFVQPSSA-VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN 344 (1135)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~d~~~~~~~~~~~ 344 (1135)
++ ...+...+...+ ....+....|+. .... ....-+.+. +.+.......+.++.-++.++.
T Consensus 314 ~~-~~~~~~~k~~d~~~ps~d~iPlPp~-~~~d-~~~~~~~l~---------------d~~kr~~l~~~~lpSic~YT~~ 375 (707)
T KOG0263|consen 314 KK-KKLLSEEKKRDPNAPSRDRIPLPPL-KQVD-KLAELEALK---------------DEQKRVKLGRNSLPSICMYTFH 375 (707)
T ss_pred hh-hhhhhhhhccccCCCccccCCCCcc-cchh-HHHHHHHHH---------------HHHHHhhcCCCCCCcEEEEEEE
Confidence 00 000000000000 000111111111 0000 000001111 1111122235667888888888
Q ss_pred -CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccC---Ccee---------ecccccccchhhhhccCCCcce
Q 001159 345 -QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK---PFKV---------WDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 345 -h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
....++|+.||+|++ ++|.|..|..|++|.+...+...-+ .... -++.+.........+.||.++|
T Consensus 376 nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 577999999999998 8999999999999999854311100 0000 0111111222334488999999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
..+.|+|+.++|++++.|+++++|.+.+..++- .+.||..+|+++.|+|-|- +|||+|.|++.++|......+++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeeecccCCchh
Confidence 999999999999999999999999999987655 7789999999999999998 89999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+.+|.+.|.|+.|||+. .++++||.|.++|+||+.++..+..+.+|.++|.+++|||+|++|++|+. ++.|.+
T Consensus 530 ifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKI 603 (707)
T ss_pred hhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEE
Confidence 999999999999999977 89999999999999999999999999999999999999999999999975 899999
Q ss_pred EECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 604 WDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999966 9999999999999999999999999998753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=347.68 Aligned_cols=308 Identities=17% Similarity=0.295 Sum_probs=262.3
Q ss_pred ceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhh-cc----CCCcc
Q 001159 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL-LN----DAAIS 410 (1135)
Q Consensus 336 ~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~h~~~ 410 (1135)
+....+.+.|+.+|.+++|+|-..-++|+|+.|-..++|++.......... ..+...+ +. .....
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----------~~lrh~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----------LVLRHCIREGGKSVPSNKD 237 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----------hhhhhhhhhhcccCCccCC
Confidence 344556666999999999999876689999999999999987411111000 0000000 11 13357
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
|++++|+.+|..||+|+.||.++||+.... . ...+..|+++|.++.|+.+|. +|++++.|+++.+||..+|...
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l---~~tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGN-L---ISTLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCch-h---hhhhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEE
Confidence 999999999999999999999999998874 2 236788999999999999999 8999999999999999999999
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..+.-|..+-..+.|-.. ..+++++.|+.|+++.+...++..++.+|.+.|.++.|+|.|.+|++++. |++++
T Consensus 312 q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlk 384 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLK 384 (524)
T ss_pred EeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeE
Confidence 999999998777888543 68999999999999999999999999999999999999999999999985 89999
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCC---------CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
+|+.........+.+|.. .|..+.|+|.| ..+++++.|++|++||+..+.++.++..|.. +|++++|+
T Consensus 385 iWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS 461 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFS 461 (524)
T ss_pred eeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEec
Confidence 999999999999999998 89999999975 3688999999999999999999999976644 89999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCchhhhh
Q 001159 642 KEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 670 (1135)
|+|+++|+|+.||.|.||+..++ ++++.
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~-~l~~s 489 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTG-KLVKS 489 (524)
T ss_pred CCCcEEEecCCCCeeEeccccch-heeEe
Confidence 99999999999999999999888 54443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=339.98 Aligned_cols=584 Identities=15% Similarity=0.150 Sum_probs=431.1
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~ 431 (1135)
..+..-|..++++.+-+....+||.+.-..+.- -..+...|+|++-..+- ..+|+. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~--vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDY--VYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCce--EEEecC-cE
Confidence 555556666888888999999999887655432 13477889999875554 444333 34
Q ss_pred EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eee---eee-cCCCCCeeEEEee
Q 001159 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ---YTF-EGHEAPVYSVCPH 506 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~---~~~-~~h~~~v~~i~~~ 506 (1135)
|.+|.- ++.++ ..+..|.+.|.-+.- -|. .++++..++.+.||+...+ ..+ .++ +...+.|+++. |
T Consensus 97 i~~~~r--gk~i~--~~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIR--HTTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEE--EEeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 33333 255677777776654 366 7889999999999998874 211 122 22223377764 5
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 6544467899999999999999999999999999999999999998888998875 899999999999999999977
Q ss_pred cCCceeEEEecCCCCEEEE-EeCCCeEEEEECCCCceEEEEe-CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 587 RKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+ .|++++|..||+.+.+ |+..|.+.+||++..+.+..+. .| ...|....|-|....+++++.|+.+++|=.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 55 8999999999976555 6667999999999988877765 44 347899999999999999999999999866544
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
.-..+.++.
T Consensus 321 dg~pR~LR~----------------------------------------------------------------------- 329 (910)
T KOG1539|consen 321 DGVPRLLRS----------------------------------------------------------------------- 329 (910)
T ss_pred CCcchheee-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred ccccccccCCcCCccceeEeecCCcccccceEEEEEEe-cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeec
Q 001159 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 823 (1135)
Q Consensus 745 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
..+|..+. .++.|. .+|..+++.+.|.+.+.+++........-. +...
T Consensus 330 -----------------------R~GHs~Pp-~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~-------~~~~ 378 (910)
T KOG1539|consen 330 -----------------------RGGHSAPP-SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG-------QLHN 378 (910)
T ss_pred -----------------------ccCCCCCc-hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc-------cccc
Confidence 01244555 777777 678888888899988887764432211100 0011
Q ss_pred CCCCcceeccCCCCCCCCCceEEEEeecC-----CCEEEEEe-CCeEEEEECCCccE-EEEEe-----CCCCCeEEEEEe
Q 001159 824 PPSGTLMTNDINESKPTEESAACIALSKN-----DSYVMSAS-GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFH 891 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~~h~~~~i~~l~~s~d-----g~~la~~~-dg~i~vwd~~~~~~-~~~~~-----~h~~~v~~l~~s 891 (1135)
..............-- -.+|..+++... .+.++..- +..++.|++..... ...+. .-...+++++.+
T Consensus 379 ~~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred ccccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe
Confidence 1111100000000000 345666666542 22333333 67899999987655 23332 123679999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceeeEEe---cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 892 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 892 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+ .|++.+.|+..|.|-+|++++|-....+ ..|.++|++++...-++.++|++.+|-+++||...........+.
T Consensus 458 ~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-- 534 (910)
T KOG1539|consen 458 F-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-- 534 (910)
T ss_pred c-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--
Confidence 9 9999999999999999999999988888 589999999999888999999999999999999987633322211
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
..+.++..+.....+++ ..|-.|+++|. +-+.++.+ .+|++.|++++|||||++|++++.|++|++||
T Consensus 535 -------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 535 -------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred -------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 45678888888888888 68889999999 66666665 46699999999999999999999999999999
Q ss_pred CCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC-CcEEEEecC
Q 001159 1047 AETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g~v~~W~~~ 1101 (1135)
+.++.++..+... ...+.+.|+| .|++|||+..| .-|++|--.
T Consensus 605 lpt~~lID~~~vd-----------~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 605 LPTGTLIDGLLVD-----------SPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccCcceeeeEecC-----------CcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 9999999876644 4567899999 78999999999 579999644
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=342.32 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=265.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--CCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--~~~ 422 (1135)
.+.+|..+.||+|++ ++|||+-+|.++||+..+...+.. |.||...|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 456999999999998 799999999999999998866654 8899999999999996 679
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999876655 7889999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|+|++ .+++||+.|..-+|||++++.++..+.+|...|.+++|+|+|..|++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9998855 89999999999999999999999999999999999999999999999985 88999999999999999
Q ss_pred eecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
+.+|.+ -|+.+.|+| .|.+|++++.|++++||...+..+++++.+|.+ .|.++++++|+..+++++.|+++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 899999998 678999999999999999999999999998866 799999999999999999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=342.03 Aligned_cols=572 Identities=13% Similarity=0.138 Sum_probs=375.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+..+++|++|||+|+ ++|+|- ..-.++||++.....+.. +..|+-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 667999999999998 788884 455899999987665543 6789999999999999999
Q ss_pred EEEEeC--CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee---ecCCC
Q 001159 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEGHE 497 (1135)
Q Consensus 423 las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~h~ 497 (1135)
+++.+. |-.|.+||.+...... -+.-...|..++|+.||. +++|.+ +..|++|.++.++.... |.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5578889877643322 122456799999999999 889888 67899999987763321 11211
Q ss_pred CCeeEEEeec-----cCCc---cEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 498 APVYSVCPHH-----KESI---QFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 498 ~~v~~i~~~~-----~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
.-.-.+.++- .+.| .--++-+..|.+.-|. ..+.+-.+ ........|++.+ .+++++|.. ++.
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa----~g~ 281 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCA----KGM 281 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeec--hhhhhhhhhhhhccccceeeee--cceEEEeec----cce
Confidence 1111111100 0000 0011112233333331 11111100 1112233455554 568888775 889
Q ss_pred EEEEECCCCeEEEEeeccc--------------------C---CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001159 569 LVEWNESEGAIKRTYSGFR--------------------K---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--------------------~---~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
|++++..+-..+.++...+ . ...-.+.|++....+.+...|..++|||++.-+.+..
T Consensus 282 vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 282 VRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK 361 (1080)
T ss_pred eeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccc
Confidence 9999988755443332111 0 0223477898889999999999999999987443321
Q ss_pred ---EeCCCCCCCcceEEEcCC-----------CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCc
Q 001159 626 ---VDADGGLPASPRLRFNKE-----------GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 626 ---~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+-.|. ..|+.+.--|- ...+++++.|++||+|++..+.. -..+..+.-...
T Consensus 362 ~~s~lyHS--~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils~~------------ 426 (1080)
T KOG1408|consen 362 CSSMLYHS--ACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILSAN------------ 426 (1080)
T ss_pred eeeeeecc--ceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccchhh------------
Confidence 11221 13443333220 23588999999999999976310 011100000000
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
..+..... ....+.. |...-++|-.. ......
T Consensus 427 l~ki~y~d----------------------------~~~q~~~---------d~~~~~fdka~-----------~s~~d~ 458 (1080)
T KOG1408|consen 427 LSKIPYED----------------------------STQQIMH---------DASAGIFDKAL-----------VSTCDS 458 (1080)
T ss_pred hhcCcccc----------------------------Cchhhhh---------hccCCcccccc-----------hhhcCc
Confidence 00000000 0000000 00001111000 000113
Q ss_pred ccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 772 ASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
...+ .+++++|+|++|++|...|.+++|++..... ...+ ..| +.+|.|+.||.
T Consensus 459 r~G~-R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----------------------~~~~--eAH-esEilcLeyS~ 511 (1080)
T KOG1408|consen 459 RFGF-RALAVSPDGQHLASGDRGGNLRVYDLQELEY-----------------------TCFM--EAH-ESEILCLEYSF 511 (1080)
T ss_pred ccce-EEEEECCCcceecccCccCceEEEEehhhhh-----------------------hhhe--ecc-cceeEEEeecC
Confidence 3445 9999999999999999999999998764211 0011 128 99999999986
Q ss_pred ---CCCEEEEEe-CCeEEEEECCC-ccEEEEEeCCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEEcccceeeEEecCc-
Q 001159 852 ---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQD-NNIIAIGMEDSSVQIYNVRVDEVKTKLKGH- 924 (1135)
Q Consensus 852 ---dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~sp~~-~~~lasg~~dg~v~iwd~~~~~~~~~l~~h- 924 (1135)
..++||+++ |.-|.|+|+.. ..+++++.+|...|+++.|.-.+ +...++++.|+.|.+-..........+.-|
T Consensus 512 p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 512 PVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHT 591 (1080)
T ss_pred chhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccc
Confidence 467999999 88999999864 56788899999999999998722 267788899988765433321111222222
Q ss_pred ----CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEE
Q 001159 925 ----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQIS 999 (1135)
Q Consensus 925 ----~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~ 999 (1135)
...++.++..|..+++++++.|..|+||++++++..+. .+...+|. +....+...|.|.|+|+ +.|+++.
T Consensus 592 ~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~--FKgs~~~e---G~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 592 QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS--FKGSRDHE---GDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee--ecccccCC---CceEEEEECCCccEEEEeecCCceE
Confidence 24588999999999999999999999999999986543 33334443 56778999999999999 6899999
Q ss_pred EEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1000 VYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1000 vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
++|. +++++.+.. +|+..|+.+.|++|.+.|++.+.||+|.||.+..
T Consensus 667 ~~Df~sgEcvA~m~---GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMT---GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhc---CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999 999988764 5699999999999999999999999999999985
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=336.41 Aligned_cols=257 Identities=19% Similarity=0.315 Sum_probs=237.6
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|.+.+|..+.||+|++.||+|+.+|.+++|+......+. .|.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 577899999999999999999999999999999875444 88999999999999998422379999999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+..++..+.+|...|..++|+|++ ++|.|+|.|.+-++||+++........+|...|.+++|.+||..+++||.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999976 99999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 644 (1135)
|..-+|||+++|..+..+.+|.+ .|..++|+|+|..+++||.|++++|||++...++.++..|.. -|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 77789999999999999999988 999999999999999999999999999999999999998865 799999998 88
Q ss_pred CEEEEEECCCcEEEEEcCCCchhhhhccccc
Q 001159 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 675 (1135)
.+|++++.|++++||...+. .+++.+.||.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe 430 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAGHE 430 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcCCc
Confidence 99999999999999998888 6677666543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=330.97 Aligned_cols=475 Identities=15% Similarity=0.262 Sum_probs=357.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.+.|-++.|+|..+++| ++-..|.|.||+.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw~l-a~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWIL-AALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceEE-EeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 778999999999999655 567899999999999887764 333566899999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i 503 (1135)
+|+.|..|+||+.++++.++ .+.+|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 8899999999999999998 8999999999999999864 6788999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCC--CEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+|+|.+. +.++++|.|++|++|.+....+..++.+|...|+|+.|-+-| .+|++|+. |..|++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999865 899999999999999999999999999999999999998755 58999874 8899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++.||.. .|..++|+|.-..+++|++||+++||+..+.+...++..... .|+|++-.+.+..+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999988888876544 7999999998888999998887765 22
Q ss_pred CCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccc
Q 001159 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1135)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1135)
-.... .-.+. ..
T Consensus 298 greeP-~vsMd-------------------------------------------------------------~~------ 309 (794)
T KOG0276|consen 298 GREEP-AVSMD-------------------------------------------------------------SN------ 309 (794)
T ss_pred cCCCC-ceeec-------------------------------------------------------------CC------
Confidence 22200 00000 00
Q ss_pred cccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCee
Q 001159 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 821 (1135)
Q Consensus 742 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
| -.+|... +.| ..+.. -+.+.++
T Consensus 310 ---g-KIiwa~~-------------------~ei-~~~~~-------ks~~~~~-------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVH-------------------SEI-QAVNL-------KSVGAQK-------------------------- 332 (794)
T ss_pred ---c-cEEEEcC-------------------cee-eeeec-------eeccCcc--------------------------
Confidence 0 0011110 000 00000 0000000
Q ss_pred ecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 001159 822 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg 901 (1135)
+...|+.+....+..+.-+-....++.||+|+++++++||.-.||..-..+ ..+.+.-....|++ |.+..|+-
T Consensus 333 -ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avR 405 (794)
T KOG0276|consen 333 -EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVR 405 (794)
T ss_pred -cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEE
Confidence 111121111111110000223346788999999999999999999743221 12445677889999 77788888
Q ss_pred eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEE
Q 001159 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 981 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 981 (1135)
..++.|+++ .+.+..+.+..... ...--.|.+|...+ ++.+++||.++++.+.. .. .....+
T Consensus 406 es~~~vki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrr-----I~------v~~k~v 467 (794)
T KOG0276|consen 406 ESNGNVKIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRR-----IE------VTSKHV 467 (794)
T ss_pred ecCCceEEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEEE-----Ee------ecccee
Confidence 889999999 56666666553211 12222455565555 55699999999874432 22 123589
Q ss_pred EECCCCcEEEEEecCeEEEEec
Q 001159 982 QFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 982 ~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
.|+.+|.+++.+.|...+++..
T Consensus 468 ~w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 468 YWSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred EEecCCCEEEEEecCceeEEEe
Confidence 9999999999988887666665
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=305.59 Aligned_cols=292 Identities=17% Similarity=0.285 Sum_probs=264.8
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..++|+ |...|.++.|++|++ .+++++.||.+.|||.-+..+.+- +.-...+|..++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 357787 999999999999998 688999999999999988766543 33367899999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCC---CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPT---GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~---~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|.|+++|+|+-|+...||++.+. ...+....+.+|.+.+.|+.|.+|++ |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 99999999999999999999865 12344457899999999999999775 8999999999999999999999999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|.+.|.++.+.|. +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++|+. |++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999996 5699999999999999999999999999999999999999999999999985 889999999
Q ss_pred CCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+..+.+..|.... ...|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||..+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 9999998887543 23699999999999999999999999999999999999998866 89999999999999999999
Q ss_pred CcEEEEE
Q 001159 654 NGIKILA 660 (1135)
Q Consensus 654 g~i~iwd 660 (1135)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=328.47 Aligned_cols=632 Identities=14% Similarity=0.186 Sum_probs=414.7
Q ss_pred cccCCCcceeeEEeec-CCCCeeEEEEecCCC--eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 329 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~--~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
+..+|........++. |..+|+|+.|-|+.+ -.+++|+.||.|.+|.++......-. .+.
T Consensus 36 Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~ 98 (764)
T KOG1063|consen 36 IAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------TIQ 98 (764)
T ss_pred EEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------eec
Confidence 3344444445566666 999999999999876 14789999999999999833322110 134
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeeccc--CCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV--GGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~--~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+|... +++++.......+...|+.+.+||.+..+ +.....+.--. .--.|+++.++.+..+++.|+.+..|.++.
T Consensus 99 g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 99 GHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred Cccee--EEEEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 55544 44554444444444789999999996544 11111222112 223567777765555788888888888887
Q ss_pred cCCC--eeeeeecCCCCCeeEEEeeccCC-ccEEEEEEcCCeEEEEeCcCCC------------------------ce--
Q 001159 484 VVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------SR-- 534 (1135)
Q Consensus 484 ~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~------------------------~~-- 534 (1135)
-.+. +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+.-.. ..
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 5533 45678899999999999875443 4688999999999999764332 00
Q ss_pred -----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC--eEEEEee----cccCCceeEEEecCCCCEE
Q 001159 535 -----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 535 -----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~i~~s~~~~~l 603 (1135)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. --+...+ ++........-|+|+++.+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 023488999999999999988888876 788999987654 2222222 2223357788899999999
Q ss_pred EEEeCCCeEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCC
Q 001159 604 LAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
++-+..|..++|.... .......-..++...|..++|+|.|.+|++.+.|.+-|+|-.-..++. -|..
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-----wHEi------ 400 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-----WHEI------ 400 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc-----eeee------
Confidence 9999999999998332 223333333355668999999999999999999999999864311110 1110
Q ss_pred CCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCcccee
Q 001159 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1135)
Q Consensus 683 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~ 762 (1135)
T Consensus 401 -------------------------------------------------------------------------------- 400 (764)
T KOG1063|consen 401 -------------------------------------------------------------------------------- 400 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC
Q 001159 763 ALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 842 (1135)
..| +.|...+ ++++|-+...++++++....+|+|+.+..-........ ....+.. ..+.. ..
T Consensus 401 --aRP-QiHGyDl-~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~--------g~~~~~~--~~~p~----gA 462 (764)
T KOG1063|consen 401 --ARP-QIHGYDL-TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAIC--------GKCFKGS--DELPD----GA 462 (764)
T ss_pred --ccc-ccccccc-eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHh--------CccccCc--hhccc----cc
Confidence 000 1266666 89999886666888888999999986542000000000 0000000 00000 12
Q ss_pred ceEEEEeecCCCEE-EEEe--CCe-----------EEEEECC---------CccEEEEEeCCCCCeEEEEEecCCCcEEE
Q 001159 843 SAACIALSKNDSYV-MSAS--GGK-----------VSLFNMM---------TFKVMTMFMSPPPAATFLAFHPQDNNIIA 899 (1135)
Q Consensus 843 ~i~~l~~s~dg~~l-a~~~--dg~-----------i~vwd~~---------~~~~~~~~~~h~~~v~~l~~sp~~~~~la 899 (1135)
.|..+-.|.+.-+. .+-+ .+. ..+.... ....++.+.||..+|.+++.+| +++++|
T Consensus 463 ~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliA 541 (764)
T KOG1063|consen 463 NVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIA 541 (764)
T ss_pred ccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEe
Confidence 22222222211110 0000 000 0000000 1224566789999999999999 899999
Q ss_pred EEeCC-----CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCC
Q 001159 900 IGMED-----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 974 (1135)
Q Consensus 900 sg~~d-----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
+++.. ..|++|+..+...++.+.+|+-.|+.|+|||||++|+++|.|+++.+|........... ......|.
T Consensus 542 SaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht-- 618 (764)
T KOG1063|consen 542 SACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT-- 618 (764)
T ss_pred ehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc--
Confidence 99865 46999999999888999999999999999999999999999999999998654432222 22244454
Q ss_pred CCCceEEEECCCCcEEEE-EecCeEEEEec-CC--ceeeccCCCCCCCCCEEEEEEee-----CCCEEEEEeCCCeEEEE
Q 001159 975 LVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALPAPISSAIYSC-----DGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 975 ~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~--~~~~~~~~~~~h~~~i~~~~~s~-----d~~~l~~~~~dg~I~vw 1045 (1135)
.-|..+.|+||+.++++ +.|.+|+||.. +. +.+..+. ...+...|+++++.| .+..+++|-+.|.|.+|
T Consensus 619 -RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a-~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 619 -RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA-CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred -eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc-hhccCCceeeEEeeccccccccceEEEEecccEEEEE
Confidence 67889999999999999 68999999999 55 5555432 234588999999976 22368899999999999
Q ss_pred ECCCceeeeeeCC---ceec-cccccCCCCccEEEEecCC---------CCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRFRCRIGP---SAYI-PTYAVSNTAHPLVIAPHPS---------EPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
....-....+... ...+ +...+. ..+..+.|.|. ....|++|++|.+++++++.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 697 RRKREHRQVTVGTFNLDTRLCATIGPD--SAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ecccccccccceeeeeccccccccChH--HhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9662211111110 0001 111122 23335666653 22356999999999999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=298.24 Aligned_cols=298 Identities=22% Similarity=0.313 Sum_probs=254.7
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+..+++ |++.|+.++..+.++.++.+++.|..+.+|++....... -.+...+.||...|..++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--------------G~~~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--------------GVPVRRLTGHSHFVSDVVL 71 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--------------CceeeeeeccceEecceEE
Confidence 3456677 999999999999988899999999999999997653221 1122347899999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
++||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .++||+.|++|++|++.. .+..++..+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~ 145 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHED 145 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecC
Confidence 9999999999999999999999986555 7889999999999999999 799999999999999654 455555443
Q ss_pred --CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 497 --EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 497 --~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.+.|.|++|+|+.+..+|++++.|+++++||+++-+....+.+|.+.++.+++||||...++|+. ++.+.+||+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL 221 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDL 221 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEc
Confidence 78999999999987789999999999999999999999999999999999999999999999874 899999999
Q ss_pred CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-------CCCcceEEEcCCCCEE
Q 001159 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLL 647 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l 647 (1135)
+.++.+..+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++..+..+..... .....+++|++||..|
T Consensus 222 ~~~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 222 NEGKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred cCCceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 9999988776544 79999999986655555 455699999999988877754321 2234578999999999
Q ss_pred EEEECCCcEEEEEcC
Q 001159 648 AVTTSDNGIKILANS 662 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~ 662 (1135)
+.|..|+.|++|.+.
T Consensus 299 f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeecCCcEEEEEee
Confidence 999999999999864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=320.68 Aligned_cols=556 Identities=14% Similarity=0.213 Sum_probs=409.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.+.|+|++=..+- .+ +++ ...|.+|.- |+.+. +.+.+|...|.-+. |=|.+++
T Consensus 75 lp~~I~alas~~~~--vy-~A~-g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDY--VY-VAS-GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCce--EE-Eec-CcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 77899999876663 22 232 346777763 32221 12445776676654 4688999
Q ss_pred EEeCCCeEEEEEeCCC-Cce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 425 VAFSKHIVHLYTYNPT-GEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~-~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
++..++.+.||+..++ ... .....+....+.|+++.- |..--..++.|+.+|.+++|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 221 111122222333777654 4432226899999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.-+|.- +.++.|..+|+|.+++++..+.+..+....+.|++++|.-||+.+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9988876 79999999999999999999999999887899999999999998776653 478899999999998888
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc----eEEEEeCCCCCCCcceEEEc-CCCCEEEEEECCCcEE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 657 (1135)
....+.+.+....|-+....+++++.|+.+++|=.+++. .+..-.+| ..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEecccCcchh
Confidence 875444488999999999999999999999998666433 33333444 4478899998 5899999999999999
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
.+++.........-..|.....
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~---------------------------------------------------------- 382 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRA---------------------------------------------------------- 382 (910)
T ss_pred hhhhhHHHHhHhhccccccccc----------------------------------------------------------
Confidence 9887544111111111110000
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC-----CcceeEecccceeeeEEeccccCCCCCc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS-----GLSLLALASNAVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 812 (1135)
+.+.+..... + .-.+| ..+++... ...+.+.-.+...+.|++..... |+
T Consensus 383 -------kk~~~~~~~~---------~------k~p~i-~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~---G~ 436 (910)
T KOG1539|consen 383 -------KKVNVFSTEK---------L------KLPPI-VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS---GR 436 (910)
T ss_pred -------ccccccchhh---------h------cCCcc-eeeecccchhhhhcceeEEecCcceEEEEeccCccc---cc
Confidence 0000000000 0 00111 22222211 11123333355667777653211 00
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEE---eCCCCCeEEE
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---MSPPPAATFL 888 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~---~~h~~~v~~l 888 (1135)
. +.++. .+.. . ...+++++.++.|++.+.|+ .|.|.+|++++|-....+ ..|..+|+.+
T Consensus 437 ~-------~L~~~-------~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 437 H-------VLDPK-------RFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred E-------EecCc-------cccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 0 00100 0000 1 57899999999999999998 899999999999988888 5799999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+... -++.+++++.+|.+.+||..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+.+ .++..
T Consensus 500 a~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f 572 (910)
T KOG1539|consen 500 AVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREF 572 (910)
T ss_pred EecC-CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHh
Confidence 9998 789999999999999999999888888773 4568899999888999999999999999999876 56677
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-CeEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIGVF 1045 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-g~I~vw 1045 (1135)
.||. ..+++++|||||++|++ +.|++|++||+ ++.++-.+.. ..+.+++.|||+|.+|||+..| .-|++|
T Consensus 573 ~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 573 WGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 8887 78999999999999999 68999999999 8888877655 5689999999999999999888 679999
Q ss_pred ECCC
Q 001159 1046 DAET 1049 (1135)
Q Consensus 1046 d~~~ 1049 (1135)
--.+
T Consensus 646 sNks 649 (910)
T KOG1539|consen 646 SNKS 649 (910)
T ss_pred Echh
Confidence 8554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=295.59 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=229.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
++||.+.|.++.|++|+++|++++.||.+.|||.-+....+ .+.-....|..++|+|.|+ ++|+|+-|+...||+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIYP 125 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEEe
Confidence 78999999999999999999999999999999998876554 4555678899999999999 899999999999999
Q ss_pred cCCC------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC-CCCEE
Q 001159 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTRL 556 (1135)
Q Consensus 484 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 556 (1135)
+.+. +..+.+.+|.+.+.++.|..+ ..|+|+|.|.++.+||+++++....+.+|.+.|.++.++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 9855 345678999999999999763 6899999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++|+. |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+........|+
T Consensus 203 vSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 203 VSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred Eeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 99986 88899999999999999999998 89999999999999999999999999999999999998777777899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++|+..|++|.+|..|.++.+||.-.+
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecccc
Confidence 9999999999999999999999997655
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=326.74 Aligned_cols=582 Identities=15% Similarity=0.232 Sum_probs=395.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
....|-.++|+|..++ +.++-..|.|.+||++-+..+.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 3568999999999996 55677899999999999988765 788999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.|-.|++|+.++.+++. ++.||-+.|..+.|++.-. +|+|+|+|.+|+||+..+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999986655 8889999999999999988 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|.. +.++++|.|.+||+||+...+....-.+ ++.=...+..+ ..-++-....-....+.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~-----------~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG-----------NSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc-----------chhhcCCcCeeeeeeec
Confidence 99987 7999999999999999975443322111 00000011111 01112111223345678
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
||.. .|+.++|+|.-..+++|++|..|++|.+..-+....-...+|...|.++-|+|...++++.+.|++|+|||+...
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 8887 899999999999999999999999999987665444444455668999999999999999999999999999876
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
..++++......... ...-|..++++++.|
T Consensus 283 -t~v~tfrrendRFW~-------------------------------------------------laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 283 -TSVQTFRRENDRFWI-------------------------------------------------LAAHPELNLFAAGHD 312 (1202)
T ss_pred -cceeeeeccCCeEEE-------------------------------------------------EEecCCcceeeeecC
Confidence 555666443332211 122345567777777
Q ss_pred ccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecC
Q 001159 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 824 (1135)
Q Consensus 745 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
+-+.+|.+..- . .+.+++.++ |+-.- |..|+-+|+.+.+..+
T Consensus 313 sGm~VFkleRE-----------------r---pa~~v~~n~--LfYvk-d~~i~~~d~~t~~d~~--------------- 354 (1202)
T KOG0292|consen 313 SGMIVFKLERE-----------------R---PAYAVNGNG--LFYVK-DRFIRSYDLRTQKDTA--------------- 354 (1202)
T ss_pred CceEEEEEccc-----------------C---ceEEEcCCE--EEEEc-cceEEeeeccccccce---------------
Confidence 77777776530 0 222332222 33332 6677777765422111
Q ss_pred CCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe---CCeEEEEECCCccEEEEE-e--CCCCCeEEEEEecCCCcEE
Q 001159 825 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMF-M--SPPPAATFLAFHPQDNNII 898 (1135)
Q Consensus 825 ~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~-~--~h~~~v~~l~~sp~~~~~l 898 (1135)
+.. +...+....++.++.|+|....+..++ .|.-.++.+.+......- . .......++-.+. +++.
T Consensus 355 ----v~~--lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrfa 426 (1202)
T KOG0292|consen 355 ----VAS--LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRFA 426 (1202)
T ss_pred ----eEe--ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cceE
Confidence 000 111000146788999999877776664 366666665432110000 0 0111222232222 2222
Q ss_pred EEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc
Q 001159 899 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 978 (1135)
Q Consensus 899 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 978 (1135)
+.--.+..+-+=++.+. ..+.+... ..+..+-+.-+|.+|+.. ...|.++|++..+......+ ..|
T Consensus 427 vl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~----------s~v 492 (1202)
T KOG0292|consen 427 VLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV----------SKV 492 (1202)
T ss_pred EEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec----------Cce
Confidence 22222445555554432 22333221 234456666667666543 44599999998775443221 457
Q ss_pred eEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc--eeeeee
Q 001159 979 TKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL--RFRCRI 1056 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~--~~~~~~ 1056 (1135)
..+.||+|..+++.-+...|.|++.+.+.+..+.. .-.|.+-+|..+|-+|.+... .|+ |.+.+| -.++++
T Consensus 493 kyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihE----tiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTL 565 (1202)
T KOG0292|consen 493 KYVVWSNDMSRVALLSKHTITIADKKLELLCSIHE----TIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTL 565 (1202)
T ss_pred eEEEEcCccchhhhcccceEEEEecchhheecchh----eeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEec
Confidence 89999999999999888999999997777766543 457889999999988887653 232 333333 233444
Q ss_pred CCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1057 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
... ++++.+ .|+.+.+=..|+.+....+.-.+
T Consensus 566 d~~-----------iyitkv-----~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 566 DKP-----------IYITKV-----KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred ccc-----------eEEEEe-----eCCEEEEEecCCCeEEEeechHH
Confidence 322 555554 47888888999999888876554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=310.90 Aligned_cols=473 Identities=15% Similarity=0.214 Sum_probs=347.5
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+.-+ .+++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44589999999999999999999999999999999987776 6666788999999998877 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcC-CCCEEEEEec
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 561 (1135)
..+++.++.|..|.+.|.+++.||.. .+++|+|.|-+|++||.+.. .+..++.+|.+.|.+++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 79999999999999999875 45678999999999999999 5567888886
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|++|++|.+....+..++.+|.. .|+|+++-+-| .++++|++|.+|+|||..+..+++++.+|.+ .|+.+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 88999999999999999999998 89999998744 6999999999999999999999999998876 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|.-.++++|+.||+++||+..+- ++.+.+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997665 22222210
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKL 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~i 799 (1135)
...++ .+++..+.+..+++|...|.+.+
T Consensus 268 ---------------------------------------------------gleRv-W~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERV-WCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ---------------------------------------------------CCceE-EEEeecCCCCeEEEeccCCcEEE
Confidence 11233 66666666666677766666554
Q ss_pred EEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEe
Q 001159 800 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 879 (1135)
Q Consensus 800 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~ 879 (1135)
= + ......+..++.|+.+-+.. +
T Consensus 296 ~-l--------------------------------------greeP~vsMd~~gKIiwa~~-~----------------- 318 (794)
T KOG0276|consen 296 K-L--------------------------------------GREEPAVSMDSNGKIIWAVH-S----------------- 318 (794)
T ss_pred E-c--------------------------------------cCCCCceeecCCccEEEEcC-c-----------------
Confidence 1 0 12222344555555433221 1
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee----EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 880 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK----TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 880 ~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~----~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.|..+.. -+.+.++ ++..|+.+ +.+-.-.=....++-||+|++++.|+ ||...||..-
T Consensus 319 ----ei~~~~~--------ks~~~~~-----ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTal 380 (794)
T KOG0276|consen 319 ----EIQAVNL--------KSVGAQK-----EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTAL 380 (794)
T ss_pred ----eeeeeec--------eeccCcc-----cccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEee
Confidence 1111110 0111111 22222221 11111111234577899998776665 8888888643
Q ss_pred CCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEE
Q 001159 956 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVY 1034 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~ 1034 (1135)
... .... +......|++|....++ -+++.|+++ -+++....+.+.. .+.+--.|.+|.
T Consensus 381 a~R-------nK~f------G~~~eFvw~~dsne~avRes~~~vki~-knfke~ksi~~~~-------~~e~i~gg~Llg 439 (794)
T KOG0276|consen 381 ALR-------NKAF------GSGLEFVWAADSNEFAVRESNGNVKIF-KNFKEHKSIRPDM-------SAEGIFGGPLLG 439 (794)
T ss_pred ehh-------hccc------ccceeEEEcCCCCeEEEEecCCceEEE-ecceecccccccc-------ceeeecCCceEE
Confidence 321 1111 34578899999776676 678889888 5566555554321 122223344444
Q ss_pred EEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1035 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1035 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
...++.+++||-++++++++|. +.+-.+.|+. +|.+++.+++|. .++..++
T Consensus 440 -~~ss~~~~fydW~~~~lVrrI~-------------v~~k~v~w~d-~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 440 -VRSSDFLCFYDWESGELVRRIE-------------VTSKHVYWSD-NGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred -EEeCCeEEEEEcccceEEEEEe-------------eccceeEEec-CCCEEEEEecCc-eeEEEec
Confidence 4567789999999999999988 3344677765 677888777764 5555554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=312.51 Aligned_cols=538 Identities=16% Similarity=0.204 Sum_probs=362.0
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC---eEEEEeC
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~---~las~~~ 428 (1135)
..|.|.+ ++|.| ....|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 45555 35689999977653322 2789999999999999888 8999999
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe--eeeeecCCCC--CeeEEE
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEA--PVYSVC 504 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~--~v~~i~ 504 (1135)
|+.|.+|.+.. +.+.....+++|...+. ++...-. ...+...|+++.+||.+..+ +...+.-..+ --.|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~--cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECV--CVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEE--EEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 44555667777765554 4443332 22333789999999985544 2223322222 234555
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCC--CceeEecCCCCcEEEEEEcCCCC---EEEEEecCCCCCCeEEEEECCCCe-
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1135)
+.++.+.-.++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +|++++ +|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 556443345566777888888865533 34557899999999999987655 444554 48899999874322
Q ss_pred --------------------EEEE----------eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEE
Q 001159 579 --------------------IKRT----------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTV 626 (1135)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~ 626 (1135)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+.. -+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 237777 99999999999999999999999999887642 22222
Q ss_pred eC--C-CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccc
Q 001159 627 DA--D-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 627 ~~--~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 703 (1135)
.. - +.........|+|++..+++-+..|..++|...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 21 1 112246778888888888888888888888722210
Q ss_pred cccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec
Q 001159 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 783 (1135)
.|... ....+|...| +.++|.|
T Consensus 350 ---------------------------------------------~w~~~------------~~iSGH~~~V-~dv~W~p 371 (764)
T KOG1063|consen 350 ---------------------------------------------FWTQE------------PVISGHVDGV-KDVDWDP 371 (764)
T ss_pred ---------------------------------------------ceeec------------cccccccccc-eeeeecC
Confidence 00000 0001244444 5555555
Q ss_pred CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCe
Q 001159 784 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK 863 (1135)
Q Consensus 784 dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~ 863 (1135)
.|.+|++.+.|.+-|++
T Consensus 372 sGeflLsvs~DQTTRlF--------------------------------------------------------------- 388 (764)
T KOG1063|consen 372 SGEFLLSVSLDQTTRLF--------------------------------------------------------------- 388 (764)
T ss_pred CCCEEEEeccccceeee---------------------------------------------------------------
Confidence 55555555555544443
Q ss_pred EEEEECC----CccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-------------------------
Q 001159 864 VSLFNMM----TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------------------------- 914 (1135)
Q Consensus 864 i~vwd~~----~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~------------------------- 914 (1135)
-.- +...+..-+-|...++|++|-+ ....+++|.+.+.+|+|+...
T Consensus 389 ----a~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 389 ----ARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ----cccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 221 1112222233555666666665 344555555555666665210
Q ss_pred ------------------c---------------------------------eeeEEecCcCCCeEEEEEcCCCCeEEEE
Q 001159 915 ------------------D---------------------------------EVKTKLKGHQNRITGLAFSPTLNALVSS 943 (1135)
Q Consensus 915 ------------------~---------------------------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~ 943 (1135)
| ..++.+.||...|++++.+|+|+++||+
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASa 543 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASA 543 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeeh
Confidence 0 0123467999999999999999999999
Q ss_pred cCC-----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec--CCceeeccCCCC
Q 001159 944 GAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS--KLECSRSWSPKD 1015 (1135)
Q Consensus 944 ~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~--~~~~~~~~~~~~ 1015 (1135)
+.. ..|++|+..++.. .+.+.+|. ..|+.++|||||++|++ +.|+++.+|.. +...-..+....
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k 615 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK 615 (764)
T ss_pred hhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccc
Confidence 864 4599999999873 44567777 78999999999999999 89999999998 222223355567
Q ss_pred CCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc--eeeeeeCCceeccccccCCCCccEEEEecCCC----CCEEEEE
Q 001159 1016 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL--RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE----PNQIALG 1089 (1135)
Q Consensus 1016 ~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sg 1089 (1135)
.|..-|.++.|+||+.+++|+|.|.+|+||....+ +.+.++... .++ ..++++++.|.+ +..++.|
T Consensus 616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~------~~~--~aVTAv~~~~~~~~e~~~~vavG 687 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL------KFS--LAVTAVAYLPVDHNEKGDVVAVG 687 (764)
T ss_pred ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh------ccC--CceeeEEeeccccccccceEEEE
Confidence 88999999999999999999999999999999988 545443211 122 333455555533 3488999
Q ss_pred ecCCcEEEEecC
Q 001159 1090 MSDGAVHVVEPS 1101 (1135)
Q Consensus 1090 ~~dg~v~~W~~~ 1101 (1135)
-+.|.|.+|..+
T Consensus 688 le~GeI~l~~~~ 699 (764)
T KOG1063|consen 688 LEKGEIVLWRRK 699 (764)
T ss_pred ecccEEEEEecc
Confidence 999999999976
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=283.15 Aligned_cols=287 Identities=17% Similarity=0.275 Sum_probs=246.3
Q ss_pred CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001159 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 ~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd 436 (1135)
+..-|||++++|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.. .|++||
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD 67 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYD 67 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEE
Confidence 3445899999999999999999998765 34456789999999999999999765 599999
Q ss_pred eCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEE
Q 001159 437 YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS 516 (1135)
Q Consensus 437 ~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s 516 (1135)
+.++... +...+.+|...|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++..+|+. ..|++
T Consensus 68 ~~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis 141 (311)
T KOG0315|consen 68 LNSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELIS 141 (311)
T ss_pred ccCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEe
Confidence 9998763 5568999999999999999999 89999999999999999977777775 78999999999976 78999
Q ss_pred EEcCCeEEEEeCcCCCceeEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC------eEEEEeecccCC
Q 001159 517 TAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKR 589 (1135)
Q Consensus 517 ~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~ 589 (1135)
|..+|.|++||+....+...+.. ....|.+++..|||.+++++.. .|..++|++-++ .++..++.|..
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~- 216 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG- 216 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-
Confidence 99999999999998877665544 4458999999999999998853 889999998754 35567788887
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhh
Q 001159 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 590 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 668 (1135)
-+..+.+|||+++|+++|.|.+++||+.++. +....+.+| ...+..++||.||.+|++|+.|+.+++|++..+ +..
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v 293 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEV 293 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccC-cee
Confidence 7888899999999999999999999999987 444445544 558999999999999999999999999999999 666
Q ss_pred hhccccccc
Q 001159 669 RMLEGRAMD 677 (1135)
Q Consensus 669 ~~~~~~~~~ 677 (1135)
+...+|...
T Consensus 294 ~qy~gh~K~ 302 (311)
T KOG0315|consen 294 RQYQGHHKA 302 (311)
T ss_pred eecCCcccc
Confidence 677776543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=290.58 Aligned_cols=525 Identities=16% Similarity=0.227 Sum_probs=384.2
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
.+-+-|.|..+...+ +.+.+++.+...+.. +.+|...|.|++.+||.-.+|+|-.-|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCcccc
Confidence 456678887433333 366777776533322 678999999999999999999875444
Q ss_pred --------eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCe--EEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe
Q 001159 431 --------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ--LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 431 --------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
.++|||..+-..+. .+......|.|++|++-+.. +..+--+.+..+.+||...+......+..+..|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 49999977654444 55566778999999985433 233334567789999999998888887778889
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE---ecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
....|+|..+ + ++.....+.+.+|+.+.+..... +.. ....|.|++|.++|..+- + |.+|.|.+|+..+
T Consensus 204 ~~a~FHPtd~-n-liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP-N-LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC-c-EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence 9999999874 4 44455578999999987765442 222 235899999999997654 3 3488999999999
Q ss_pred CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
.+..+....|.+ .|.+++...+|. |++|+.|..|..|| ...+.+...+.....+.|..++=...+ |++|+..+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888888777776 899999999886 45599999999999 556666666666666677777654433 6677766666
Q ss_pred EEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccc
Q 001159 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.-=.++++..+. .
T Consensus 352 L~Gt~~~~f~~~--v----------------------------------------------------------------- 364 (626)
T KOG2106|consen 352 LQGTLENGFTLT--V----------------------------------------------------------------- 364 (626)
T ss_pred EEeeecCCceEE--E-----------------------------------------------------------------
Confidence 554444441110 0
Q ss_pred ccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccccc
Q 001159 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
..|..+. ..++.+|+..++++++.|+.+++|+-.
T Consensus 365 --------------------------------~gh~del-wgla~hps~~q~~T~gqdk~v~lW~~~------------- 398 (626)
T KOG2106|consen 365 --------------------------------QGHGDEL-WGLATHPSKNQLLTCGQDKHVRLWNDH------------- 398 (626)
T ss_pred --------------------------------Eecccce-eeEEcCCChhheeeccCcceEEEccCC-------------
Confidence 1144455 899999999999999999999999611
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCC
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 895 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 895 (1135)
-.+|... - ..++.|+.|+|.| .+|.|. .|...|.|.++...+..-.. +..+++++|+| +|
T Consensus 399 --k~~wt~~-------------~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G 459 (626)
T KOG2106|consen 399 --KLEWTKI-------------I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DG 459 (626)
T ss_pred --ceeEEEE-------------e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CC
Confidence 0122211 1 6788899999999 899998 89999999999666555444 88999999999 99
Q ss_pred cEEEEEeCCCcEEEEEcccc-eeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC--
Q 001159 896 NIIAIGMEDSSVQIYNVRVD-EVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-- 971 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~-~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-- 971 (1135)
.+||.|+.|+.|+||.+..+ ...... +.|..+|+.|.||+|+++|.+.+.|-.|..|.....+.... .+...-.
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts--~kDvkW~t~ 537 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS--VKDVKWATY 537 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce--ecceeeeee
Confidence 99999999999999998754 333333 23458999999999999999999999999994433222111 1111000
Q ss_pred ----------CCCCCCceEEEECCCCcEEEEE-ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 972 ----------QSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 972 ----------~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
......+..++-+.+.+++|++ ..|.|++|.. -......+....+|++-|++++|+.+...|++.+.|
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D 617 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKD 617 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCC
Confidence 0011345566677788888886 4689999998 333333445556889999999999999999888899
Q ss_pred CeEEEEEC
Q 001159 1040 GAIGVFDA 1047 (1135)
Q Consensus 1040 g~I~vwd~ 1047 (1135)
.+|..|++
T Consensus 618 ~Si~qW~l 625 (626)
T KOG2106|consen 618 TSIMQWRL 625 (626)
T ss_pred ceEEEEEe
Confidence 99999986
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=297.38 Aligned_cols=309 Identities=19% Similarity=0.290 Sum_probs=272.2
Q ss_pred ecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccch
Q 001159 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
..|.+..-....+-..+........|..+|+.+-|+|+-. +.|+++.|++|++||..+|+....
T Consensus 82 g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~--------------- 145 (406)
T KOG0295|consen 82 GDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS--------------- 145 (406)
T ss_pred CCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh---------------
Confidence 3444433333333333444445555899999999999997 889999999999999999988654
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
+.||...|..|+|+..|++||+++.|-.+++||..+. ..+...+.+|...|.+++|-|-|. +|++++.|.+|
T Consensus 146 ----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~ti 217 (406)
T KOG0295|consen 146 ----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTI 217 (406)
T ss_pred ----hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccce
Confidence 8899999999999999999999999999999999873 334447789999999999999998 89999999999
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC-------
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------- 552 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~------- 552 (1135)
+.|++.+|-++++|.+|...|..+..+ .||.++++++.|.++++|-+.++++...+..|+.+|.+++|.|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence 999999999999999999999999875 46699999999999999999999999999999999999999763
Q ss_pred --------CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 553 --------GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+.++.+++. |++|++||+.+|.++.++.+|.. .|..++|+|.|++|+++.+|+++++||++++++..
T Consensus 296 ~at~~~~~~~~l~s~Sr----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSR----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred hccCCCCCccEEEeecc----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 236666654 89999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++..|.+ .|+++.|+.+..++++|+-|.++++|.-
T Consensus 371 ~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 9998876 7999999999999999999999999964
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=288.87 Aligned_cols=339 Identities=18% Similarity=0.279 Sum_probs=290.6
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEe
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd 527 (1135)
.|..|++.|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+.+ |.+|+||..+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999764 49999999999999999
Q ss_pred CcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe
Q 001159 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 607 (1135)
..++.....+......+.-+.|+|.+..|++|+. ||.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988877888999999999999999875 89999999999999999999887 899999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCC
Q 001159 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
.||+|++|++.++.++..+....+ ....++.++.++..++.|+.++.+.+-+..+++ .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 999999999999999999976553 367899999999999999999999888766651 1100000
Q ss_pred CCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecC
Q 001159 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~ 767 (1135)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 768 DSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
.+..+. ....+....|.++
T Consensus 274 ----------------~~~~l~---------------------------------------------~~~e~~~esve~~ 292 (399)
T KOG0296|consen 274 ----------------TVPELK---------------------------------------------PSQEELDESVESI 292 (399)
T ss_pred ----------------CCcccc---------------------------------------------ccchhhhhhhhhc
Confidence 000000 0000103344555
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCC
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 926 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 926 (1135)
.+|..-.+.|+|+ ||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||..
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCch
Confidence 6666777889999 9999999999877765555 888999999987 46889999999999999999999999999999
Q ss_pred CeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 927 RITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.|.+++++|+.++++|+|.|++.+|+++.
T Consensus 370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=278.16 Aligned_cols=296 Identities=17% Similarity=0.202 Sum_probs=246.0
Q ss_pred cccccceEEEEEEecCC-cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 769 SIAASKVVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
..|...| +.++..+.+ ..+++++.|..+.+|++... |.+.|..+.. +.| | ...|..+
T Consensus 12 ~gh~d~V-t~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--H-sH~v~dv 69 (315)
T KOG0279|consen 12 EGHTDWV-TALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--H-SHFVSDV 69 (315)
T ss_pred cCCCceE-EEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--c-ceEecce
Confidence 3488899 999998875 45667777999999998753 3344444443 555 7 8899999
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC-cC
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQ 925 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~ 925 (1135)
+.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++........... |.
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHR 148 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCc
Confidence 9999999999999 99999999999999999999999999999999 899999999999999999885544433332 37
Q ss_pred CCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEe
Q 001159 926 NRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYD 1002 (1135)
Q Consensus 926 ~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd 1002 (1135)
+-|+++.|+|+ ..+++++|.|++|++||+.+.+ ....+.||. ..++.+++||||...++ +.|+.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 88999999998 6799999999999999999876 445566676 78999999999999999 5799999999
Q ss_pred c-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCC
Q 001159 1003 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1003 ~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1135)
+ .++.+..+. |...|.+++|+|+.-+|+.+ .+..|+|||++++..+.++......+.. -......++++|++
T Consensus 221 L~~~k~lysl~----a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~-~~~~~~clslaws~- 293 (315)
T KOG0279|consen 221 LNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSS-KAGDPICLSLAWSA- 293 (315)
T ss_pred ccCCceeEecc----CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccccc-ccCCcEEEEEEEcC-
Confidence 9 777765543 47899999999998777766 5566999999999999888866544422 23346778999998
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001159 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
||..|++|-.|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 899999999999999998753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=272.79 Aligned_cols=295 Identities=14% Similarity=0.216 Sum_probs=251.1
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe--EEEEeecccCC
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (1135)
-+|++++.|.+||+|...++.+..++....+.|..+.+.|+++.|++++ ...|++||++++. ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 6899999999999999999999999999999999999999999999986 6679999999865 5899999988
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 590 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
.|.++.|..+|+.+++||+||+++|||++.......+.. ..+|+++..+|+..-|++|..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999998655555543 358999999999999999999999999999766 2111
Q ss_pred hccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccc
Q 001159 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 749 (1135)
.+-..
T Consensus 161 ~liPe--------------------------------------------------------------------------- 165 (311)
T KOG0315|consen 161 ELIPE--------------------------------------------------------------------------- 165 (311)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 11000
Q ss_pred cccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcc
Q 001159 750 WRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 829 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1135)
....| .++.+.|||..++++...|...+|++..... .+...
T Consensus 166 ---------------------~~~~i-~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~ 206 (311)
T KOG0315|consen 166 ---------------------DDTSI-QSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELE 206 (311)
T ss_pred ---------------------CCcce-eeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccce
Confidence 11234 8999999999999999999999999865221 11111
Q ss_pred eeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc-cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 830 MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 830 ~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
....++. | .+.+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|..-+..++||. |+++|++|+.|+.+
T Consensus 207 P~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 207 PVHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTA 282 (311)
T ss_pred Ehhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCce
Confidence 1112333 7 89999999999999999998 999999999998 66777899999999999999 99999999999999
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEc
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++|++..++.++...+|.....|++..
T Consensus 283 rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999988888764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=301.49 Aligned_cols=343 Identities=20% Similarity=0.297 Sum_probs=275.9
Q ss_pred cCCCCCCCCCccccCCcchhHHHhhcccCCcceee-ecCCC-CCCcc-----ccCCC---cceeeEEee--cCCCCeeEE
Q 001159 285 KHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVS-FAGVA-HTPNV-----YSQDD---LTKTVVRTL--NQGSNVMSM 352 (1135)
Q Consensus 285 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~s~~g-~~~~~-----~~~d~---~~~~~~~~~--~h~~~V~~v 352 (1135)
+.++.|.++..++|.++--.+...+...-. .... .-|+. ..+.. |..|. .+.+.+++- +-+-+|..|
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~~v 102 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVNVV 102 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhccCCcccccccceEeccccccccceeeE
Confidence 456666668889999886666555443332 1111 11111 11111 11111 112222221 256789999
Q ss_pred EEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001159 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 432 (1135)
.|.|+|++ |++|+..|.+.+|+..+-. ...++..|..+|.++.||++|.++++|+.+|.|
T Consensus 103 ~WtPeGRR-Lltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 103 RWTPEGRR-LLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred EEcCCCce-eEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 99999996 6789999999999964321 122467899999999999999999999999999
Q ss_pred EEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCc
Q 001159 433 HLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511 (1135)
Q Consensus 433 ~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 511 (1135)
++|+..-... + .+.+|. ..|++++|+|.+. .|+||++||+|+|||....+....+.+|.-.|.++.|||..
T Consensus 163 KyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-- 234 (464)
T KOG0284|consen 163 KYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-- 234 (464)
T ss_pred Eecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--
Confidence 9999876432 2 344554 8999999999887 89999999999999999999989999999999999999987
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..|++||.|..|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.++++++|.. .|
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv 309 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DV 309 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hh
Confidence 79999999999999999999999999999999999999999999999985 88999999999999999999998 89
Q ss_pred eEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 592 GVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 592 ~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999955 5667799999999999997777766643 344589999999999999999999999999753
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=289.65 Aligned_cols=295 Identities=18% Similarity=0.272 Sum_probs=266.1
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
.+.++.+.+. |.+.|.|+++.|.+. .+++|+.|++|.|||+.+|+...+ +.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3556667777 999999999999987 799999999999999999988765 7899999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+++|+--.||++++.|+.|+.||+...+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999988777 6789999999999999888 8999999999999999999999999
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.||..+|.++.+.|.+ ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++. ..|+.|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998876 68999999999999999999999999999999999999999999998873 3599999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe---CC---CCCCCcceEEEcCCCCEE
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---AD---GGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~~~~~~~~~~l 647 (1135)
+..|..+..+.+|.. .|++++...|+ ++++|+++|.+.+||.+++-..+... .. .....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999988 89999988775 88999999999999999987665542 11 123468899999999999
Q ss_pred EEEECCCcEEEEEcCC
Q 001159 648 AVTTSDNGIKILANSD 663 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~ 663 (1135)
++|..|.+|++|.-..
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999997543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=293.04 Aligned_cols=281 Identities=18% Similarity=0.276 Sum_probs=254.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
....|++++|+.+|. +||+|+.||.++||+...+. +.+ +..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~t-------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IST-------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hhh-------------------hhccCCceEEEEEcCCCCEEE
Confidence 457899999999998 89999999999999987543 322 678999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+++.|+++.+||..++.... .+.-|..+-.+|.|-.+.. |++++.|+.|+|+.+...+++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987654 4556888878899987765 89999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC---------EEEEEecCCCCCCeEEEEECC
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|+|.+ .+|+++|.|++++||.+........+..|...|+.+.|+|+|. .+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 98876 8999999999999999998888999999999999999999753 5777765 8899999999
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
.|.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.++++.++...... .|..+.|+.+|.+|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999997654 4899999999999999999999
Q ss_pred EEEEEcC
Q 001159 656 IKILANS 662 (1135)
Q Consensus 656 i~iwd~~ 662 (1135)
+++.|++
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=280.14 Aligned_cols=329 Identities=14% Similarity=0.197 Sum_probs=276.2
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
|..|+..|.+++.+|+.+++|+|+.|....+|++.++.... .+.+|+..|+++.|+.||. +||||+.+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 56799999999999999999999999999999999998554 7889999999999999999 999999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
..++.....+...-..+.=+.|||.. ..|+.|+.||.+.+|.+.+......+.+|+.++++=.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999988887666778889999965 89999999999999999998888899999999999999999999999975
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CC---CC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GL---PA 634 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~---~~ 634 (1135)
+++|++||+.+++++..+.+..+....++.++..+..++.|+.++.+++-+..+++.+....... .. ..
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 89999999999999999987766678889999999999999999999999999998877765310 00 11
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 714 (1135)
|-.+.++..-.+.|+|+-||+|.|||....
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 222223333344455555555555554322
Q ss_pred CCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEeccc
Q 001159 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASN 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~d 794 (1135)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc
Q 001159 795 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 873 (1135)
Q Consensus 795 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~ 873 (1135)
.. . .... | +..|+.+.|-+ ..+|+++. +|.|+.||.++|+
T Consensus 319 -----------~~----------------------R--~~c~--h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 319 -----------TL----------------------R--HICE--H-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred -----------hh----------------------h--eecc--C-CCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 00 0 0001 5 77788888888 66777776 9999999999999
Q ss_pred EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 874 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 874 ~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
++.++.+|...|.+++++| +.++++|++.|++.+||+..
T Consensus 360 l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999 89999999999999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=277.20 Aligned_cols=524 Identities=14% Similarity=0.173 Sum_probs=377.8
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--------cEEEEEc
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--------MIKVWDV 484 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--------~i~iwd~ 484 (1135)
.+-+-|.|..+.... +.+.+++.+...+. .+.+|...|.|++.+||-- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 456778887665432 34566777553221 4669999999999999866 677664433 5999998
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEE--EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE-EEEec
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST--AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL-FSCGT 561 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~ 561 (1135)
.+-..++.+......|.+++|++.+.|.++... +.+..+.+||...+.........+..+....|.|.+..+ ++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888777889999999999887777665 345678999999887777777777889999999976654 4554
Q ss_pred CCCCCCeEEEEECCCCeEEEE---eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceE
Q 001159 562 SKEGESHLVEWNESEGAIKRT---YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~---~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
.+.+..|+.+.+.+.+. |..+....|.|++|.++|. +++|..+|.|.||+..+.+..+....| ...|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEEE
Confidence 88999999998877654 5555556799999999875 789999999999999887777666655 4489999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCC
Q 001159 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1135)
Q Consensus 639 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 718 (1135)
..-.+|.+|- |+.|..|..||-. - +.++..+-..
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~~-y-~k~r~~elPe------------------------------------------- 327 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDDN-Y-RKLRETELPE------------------------------------------- 327 (626)
T ss_pred EEecCccEee-cCccceEEecccc-c-cccccccCch-------------------------------------------
Confidence 9999997665 9999999999922 1 1111111000
Q ss_pred CccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceee
Q 001159 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHK 798 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~ 798 (1135)
..+.| ..++ +.+.-|++|+..+.|.
T Consensus 328 ----------------------------------------------------~~G~i-Rtv~--e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 328 ----------------------------------------------------QFGPI-RTVA--EGKGDILVGTTRNFIL 352 (626)
T ss_pred ----------------------------------------------------hcCCe-eEEe--cCCCcEEEeeccceEE
Confidence 00111 1111 1111155555544443
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM 877 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 877 (1135)
.=. .+++..+. ..+ | ......++.+|+...+++++ |+.+++|+ ..++.-+
T Consensus 353 ~Gt----------------------~~~~f~~~--v~g--h-~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 353 QGT----------------------LENGFTLT--VQG--H-GDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred Eee----------------------ecCCceEE--EEe--c-ccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 211 11221111 122 6 77899999999999999998 99999999 4445444
Q ss_pred EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 878 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 878 ~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
.. -..++.|++|+| .| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||.++.|+.|+||.++..
T Consensus 404 ~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 404 KI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 33 467899999999 67 999999999999999999776665554 889999999999999999999999999999876
Q ss_pred ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecC-Cceeec---------------cCCCCCCCCC
Q 001159 958 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECSRS---------------WSPKDALPAP 1020 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~-~~~~~~---------------~~~~~~h~~~ 1020 (1135)
.....+ +....+ .+++.+.||+|++++.+ +.|-.|-.|... ...+.. ......|...
T Consensus 480 g~~y~r-~~k~~g-----s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~ 553 (626)
T KOG2106|consen 480 GRKYSR-VGKCSG-----SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD 553 (626)
T ss_pred CcEEEE-eeeecC-----ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence 643322 222222 57999999999999999 789999999542 111111 0112345667
Q ss_pred EEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
|..++-|.+++++|+|...|.|++|...--+... ..|++ ..++....+++|.-.| ..+++.+.|.+|..|++
T Consensus 554 i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA--~~he~-----~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 554 INAVARSHCEKLLASGDDFGKVHLFSYPCSSPRA--PSHEY-----GGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred HHHhhhhhhhhhhhccccCceEEEEccccCCCcc--cceee-----ccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 7888888899999999999999999876433322 12222 2445667789998866 46666569999999986
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=267.03 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=239.4
Q ss_pred eEEeec-CCCCeeEEEEecC-CCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 339 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.++.+. |.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.+++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 345555 8899999999999 76 899999999999999885322110 11123479999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eeeeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 493 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 493 (1135)
+|.|++||+|+.|.++.||.-..+ .+.....+.||...|.|++|+++|. +||+|++|+.|-||.+..+ .+...+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999987754 4556778999999999999999999 9999999999999998743 577889
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC---CCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
++|...|..+.|||.. .+|+++|.|++|++|+-.. -.+...+.+|...|.+++|++.|..|++++. |++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999988 7999999999999997663 2357788999999999999999999999974 89999
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc------eEEEEeCCCCCCCcceEEEcCC-
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN------MLTTVDADGGLPASPRLRFNKE- 643 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~- 643 (1135)
||-.. ..+...+...+..+.|. ...|++++.|+.|+++.-...- .+... .+.|...|+++.|+|.
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCC
Confidence 99865 33444444478889998 5689999999999999766421 11111 2233448999999994
Q ss_pred CCEEEEEECCCcEEEEEcC
Q 001159 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~ 662 (1135)
..+|+++++||.+++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=271.60 Aligned_cols=285 Identities=18% Similarity=0.247 Sum_probs=250.6
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.|++.|..+.|+|+|. ++|+|+.|..|.+|++.....- ...+++|++.|..+.|.+|++.|
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccCCCEE
Confidence 3899999999999998 8999999999999997643221 11267999999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++++.|.+++.||+++|+..+ .+++|...|+++.-+.-|.. ++.|++.|+++++||+++..+++++. ...+++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999998776 67889999999997666776 78999999999999999999888885 56789999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC----CeE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 579 (1135)
.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+. ..+
T Consensus 181 ~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 997655 78999999999999999999999999999999999999999999999876 88999999974 345
Q ss_pred EEEeecccCC---ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 580 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 580 ~~~~~~~~~~---~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
+..+.++... ....++|+|++..+-+|+.|..+++||......+..+.+|.+ .|++++|+|....|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7777776431 345688999999999999999999999999999999988755 89999999999999999999998
Q ss_pred EEEE
Q 001159 657 KILA 660 (1135)
Q Consensus 657 ~iwd 660 (1135)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=276.39 Aligned_cols=549 Identities=12% Similarity=0.132 Sum_probs=387.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
-..+|.++|||.+.+.||.+-.||.|.||++..+-... ..+.++. ..|.+++|++.+ .|.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 34579999999999999999999999999999864333 3555554 579999999655 48899999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee--EecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+++....+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+.-..+++.+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999977 789999999988777776665544 34445679999999999999999986
Q ss_pred CCCCeEEEEECCCCeEEEEeec-----c--cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 564 EGESHLVEWNESEGAIKRTYSG-----F--RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~-----~--~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
||.|++||..++..+...+. . ....|.++.|-.+ ..|++|..-|+|.+||...+.+++....|.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 89999999999887762221 1 1224677777755 5799999999999999999999999988755 799
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 716 (1135)
+++..+++.++++++.|+.|.-+...+.... .+.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999988877665221 000
Q ss_pred CCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccce
Q 001159 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAV 796 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~ 796 (1135)
......|...+ .+++..++ .+++++.|..
T Consensus 284 ------------------------------------------------~~~r~~h~hdv-rs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 284 ------------------------------------------------NSRRDLHAHDV-RSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred ------------------------------------------------eccccCCcccc-eeeeeecc--eEEecceeeE
Confidence 01112266667 88888887 6889999988
Q ss_pred eeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCcc---
Q 001159 797 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK--- 873 (1135)
Q Consensus 797 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~--- 873 (1135)
+.+-.....+. .+ ..+.... . ... -+...|..++++.-.+..+.+|.+.+..
T Consensus 313 l~i~~s~~~~~--------------~~----h~~~~~~----p-~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g 367 (691)
T KOG2048|consen 313 LAICSSREFKN--------------MD----HRQKNLF----P-ASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQG 367 (691)
T ss_pred EEEccccccCc--------------hh----hhccccc----c-ccc--eeecCccceEEEEeccccccceeccCccccc
Confidence 87743221000 00 0000000 0 111 2333455555555557888899887652
Q ss_pred ------EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE-----ecCcCCCeEEEEEcCCCCeEEE
Q 001159 874 ------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-----LKGHQNRITGLAFSPTLNALVS 942 (1135)
Q Consensus 874 ------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~i~~l~~s~d~~~l~s 942 (1135)
+.+-.......|.|.+.|| +|++||.+.- ..++||.+.....+.. ...-.-....+.|+-|+..++.
T Consensus 368 ~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~ 445 (691)
T KOG2048|consen 368 EYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFL 445 (691)
T ss_pred ccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEE
Confidence 1222223445799999999 9999998764 4688888875322222 1222235678899999988888
Q ss_pred Ec-CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCC
Q 001159 943 SG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAP 1020 (1135)
Q Consensus 943 ~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~ 1020 (1135)
++ .+..+.+.+.++........+... .....++.++.|+||+|+|+ +..+.|.+|+++......+.... ...
T Consensus 446 ~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--n~~ 519 (691)
T KOG2048|consen 446 VSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--NID 519 (691)
T ss_pred EecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--Ccc
Confidence 88 667788888776553222222111 22368999999999999999 78999999999555554444322 578
Q ss_pred EEEEEEee-CCCEEEEEeCCCeEEEEECCCceeeeeeCCce--eccccccCCCCccEEEEecCCCCCEEEEEecCCcEEE
Q 001159 1021 ISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA--YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1021 i~~~~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~ 1097 (1135)
|++++|+| +-..|+.+..|+.|.-||++..+ +.++.... .+|....+-......+.|+|.+...++. -+.+-+++
T Consensus 520 vTa~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~-~~a~w~~~ 597 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIV-YDAHWSCL 597 (691)
T ss_pred eeeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEE-EcCcEEEE
Confidence 99999995 55678889999999999995433 32222111 1111111222334467777766555554 33355666
Q ss_pred EecC
Q 001159 1098 VEPS 1101 (1135)
Q Consensus 1098 W~~~ 1101 (1135)
.|..
T Consensus 598 id~~ 601 (691)
T KOG2048|consen 598 IDFS 601 (691)
T ss_pred EecC
Confidence 6654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=292.69 Aligned_cols=386 Identities=17% Similarity=0.254 Sum_probs=291.5
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+...+..|..++|+|...+++++-..|.|++||..-+..+. .+..|.++|..++|+|++. +++|||+|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567789999999999999999999999999999988777 7789999999999999999 999999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
..+.+++.++.||-+.|..+.||+.. .+|+++|.|.+|+||++.+..++..+++|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999877 79999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
|.+|++||+..-+....-.+.-........ ++.=+.|+.|-.| ...+.+|. ..|+-++|+|.
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~----~~~dLfg~~DaVV----------K~VLEGHD--RGVNwaAfhpT 217 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQ----GNSDLFGQTDAVV----------KHVLEGHD--RGVNWAAFHPT 217 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccc----cchhhcCCcCeee----------eeeecccc--cccceEEecCC
Confidence 889999998643322211110000010000 0000122223222 23455554 48999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
-.++++|++|..|++|.....
T Consensus 218 lpliVSG~DDRqVKlWrmnet----------------------------------------------------------- 238 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET----------------------------------------------------------- 238 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence 999999999999999987543
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
+.|++++. .+|.+.| .++.|+|....+++.+.|++|++||+.
T Consensus 239 ------------------------KaWEvDtc-------------rgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 239 ------------------------KAWEVDTC-------------RGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ------------------------cceeehhh-------------hcccCCc-ceEEecCccceeEecCCCccEEEEecc
Confidence 12333321 1377888 999999999999999999999999875
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCC
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 883 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~ 883 (1135)
... .+...-.. .+..+.++.+|..+++|.|-|+-+.||.++.-..
T Consensus 281 kRt----------------------~v~tfrre----ndRFW~laahP~lNLfAAgHDsGm~VFkleRErp--------- 325 (1202)
T KOG0292|consen 281 KRT----------------------SVQTFRRE----NDRFWILAAHPELNLFAAGHDSGMIVFKLERERP--------- 325 (1202)
T ss_pred ccc----------------------ceeeeecc----CCeEEEEEecCCcceeeeecCCceEEEEEcccCc---------
Confidence 321 11111112 6789999999999999999998888888764322
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEccccee--eEEecCcC---CCeEEEEEcCCCCe-EEEEcCC-CcEEEEeCC
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQ---NRITGLAFSPTLNA-LVSSGAD-AQLCMWSID 955 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~---~~i~~l~~s~d~~~-l~s~~~D-~~i~iwd~~ 955 (1135)
+.+.+ ++.++. .- |..|+-+|+.+.+- +..++... .++.++.++|.... |++...| +..-++.+.
T Consensus 326 ---a~~v~--~n~LfY-vk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 326 ---AYAVN--GNGLFY-VK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred ---eEEEc--CCEEEE-Ec-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 23333 333333 33 89999999998543 34454332 57889999997654 4443333 444445443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=279.04 Aligned_cols=305 Identities=16% Similarity=0.243 Sum_probs=266.4
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
...+.+.+|..+|+.+.|+|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4556778899999999999977 78899999999999999999999999999999999999999999999985 66
Q ss_pred eEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE
Q 001159 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 568 ~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 646 (1135)
.+.+||..+ .++++...+|.. .|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|.. .|..+..+.||.+
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 699999987 567778888877 899999999999999999999999999999999999998866 7999999999999
Q ss_pred EEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+++++.|.++++|-..++ ++...+..|.
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~hE--------------------------------------------------- 277 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELREHE--------------------------------------------------- 277 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhccc---------------------------------------------------
Confidence 999999999999999888 5555555543
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
..| .+++|.|...+= . |.
T Consensus 278 ----------------------------------------------h~v-Eci~wap~~~~~--~-----i~-------- 295 (406)
T KOG0295|consen 278 ----------------------------------------------HPV-ECIAWAPESSYP--S-----IS-------- 295 (406)
T ss_pred ----------------------------------------------cce-EEEEecccccCc--c-----hh--------
Confidence 333 677776644310 0 00
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCe
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA 885 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v 885 (1135)
+ .. . ... .+.++.+++ |++|++||+.++.++.++.+|.+.|
T Consensus 296 ----------------~----------at---~-~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 296 ----------------E----------AT---G-STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred ----------------h----------cc---C-CCC--------CccEEEeecccceEEEEeccCCeEEEEEeccccee
Confidence 0 00 0 111 567899999 9999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 886 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 886 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
..++|+| +|++|+++.+|+++++||+.++++...+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 338 r~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999963
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=277.12 Aligned_cols=247 Identities=16% Similarity=0.282 Sum_probs=230.1
Q ss_pred hhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.++.+|.++|.|+++.|.+.++++|+.|++|+|||+.++.... ++.||...|..+++|+--. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 3578999999999999999999999999999999999986544 7889999999999999888 8999999999999
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
||++..+.++.+.||-..|.|++.+|.- +.|++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 9999999999999999999999999987 79999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+..+..+.+|.. -|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeec
Confidence 89999999999999999998887 89999999999999999877 599999999999988877654 68999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001159 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|+ ++++|+++|.+..||.+++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 887 7888999999999999988
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=269.02 Aligned_cols=254 Identities=16% Similarity=0.277 Sum_probs=221.4
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
+.+.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .|+++|.|++|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence 445688999999999999999999999999999999977543 33447789999999999999999 89999999999
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
+.||+++|++++.+++|..-|+++.....+ -.++.+++.|+++++||+++......+. ....++++.|..++..+++|
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccC-CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeec
Confidence 999999999999999999999999843322 2678899999999999999877766553 34578999999999999999
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC----CceEEEEeCCCCCC--
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP-- 633 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~-- 633 (1135)
+- |+.|++||++.+.....+.||.+ .|+.+..+++|.++.+-+.|.++++||++. ..++..+.++.+.-
T Consensus 193 gI----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 193 GI----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred cc----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 87 77899999999999999999999 999999999999999999999999999875 34577777664432
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
....++|+|++..+.+|+.|..+.+||....
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccc
Confidence 2357899999999999999999999998654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=313.61 Aligned_cols=286 Identities=20% Similarity=0.357 Sum_probs=252.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc--ccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+...|.++.|||+|+ .+++++.++.+++|+..+++ .... +.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999999 58899999999999997665 2221 4789999999999999999
Q ss_pred EEEEeCCCeEEEEEeC-CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 423 LGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
+++++.|++|+|||+. .+..++ .+.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 334444 7889999999999999997 899999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCC--cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+++|++++ .+|++++.|+.|++||+.++. +...+..+.. .++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99998755 899999999999999999988 3455555544 5999999999999999975 789999999999
Q ss_pred eEEEEeecccCC--ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE--CC
Q 001159 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1135)
Q Consensus 578 ~~~~~~~~~~~~--~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d 653 (1135)
..+..+.+|... .+.+...++.+.++++|+.|+.|++|++.++..+..+.+|. ...+..+.+++...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34455567889999999999999999999999999998885 44789999999999999998 68
Q ss_pred CcEEEEEcC
Q 001159 654 NGIKILANS 662 (1135)
Q Consensus 654 g~i~iwd~~ 662 (1135)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=303.52 Aligned_cols=247 Identities=17% Similarity=0.345 Sum_probs=228.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC--------c--------------------eeeeeEeecccCCEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--------E--------------------LRQHLEIDAHVGGVND 458 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~--------~--------------------~~~~~~l~~h~~~v~~ 458 (1135)
....++|..||+|+++||.|..|..|++|.+...+ . -....++-||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34569999999999999999999999999987311 0 0122357899999999
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec
Q 001159 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 459 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 538 (1135)
+.|+|+.+ +|++|+.|+++++|.+.+..++..++||..||+.+.|+|.+ -+++|+|.|++.++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999999865 999999999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
+|-+.|.|+.|+|+..++++|+. |.++++||..+|..++.|.||.+ +|.+++|+|+|++|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999986 88999999999999999999998 99999999999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++++..+..| .+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 458999999999999999999999999998654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=273.58 Aligned_cols=292 Identities=17% Similarity=0.280 Sum_probs=238.4
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
++..|.+.|.-+.||++|++||+++.|.+..||++.....++..+++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4778999999999999999999999999999999988777777789999999999999999999 89999999999999
Q ss_pred EcCCCeeeeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 483 DVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 483 d~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
|+.+|.+.+.+. +|...+.+++|.|++ ..+++|+.|++|..||++.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlDg------------------------------- 343 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLDG------------------------------- 343 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCCc-------------------------------
Confidence 999999887774 245667777777754 6677777777777776541
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
..+...++-....|.++++++||+++++.+.|..|++++..+......+..+ .+|++..+|
T Consensus 344 ----------------n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS 404 (519)
T KOG0293|consen 344 ----------------NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSIS 404 (519)
T ss_pred ----------------chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEc
Confidence 1122222333336888999999999999999999999999887666555433 368999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcc
Q 001159 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1135)
.|++++++.-.+..+++||++.. .+++...||...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------- 439 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------- 439 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------
Confidence 99999999999999999999865 566655554311
Q ss_pred ccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEE
Q 001159 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWK 801 (1135)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~ 801 (1135)
.+++-
T Consensus 440 ----------------------------------------------------------------~fiIr----------- 444 (519)
T KOG0293|consen 440 ----------------------------------------------------------------HFIIR----------- 444 (519)
T ss_pred ----------------------------------------------------------------ceEEE-----------
Confidence 00111
Q ss_pred eccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee-cCCCEEEEEe-CCeEEEEECCCccEEEEEe
Q 001159 802 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS-KNDSYVMSAS-GGKVSLFNMMTFKVMTMFM 879 (1135)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s-~dg~~la~~~-dg~i~vwd~~~~~~~~~~~ 879 (1135)
-||- .+.+++|+|+ |++|+||+..+++++.++.
T Consensus 445 ---------------------------------------------SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 445 ---------------------------------------------SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred ---------------------------------------------eccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 1111 1567999999 9999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 880 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 880 ~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
||...|+|++|+|.+..++|+|++||+||||...
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999999999999999999999999765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-29 Score=265.82 Aligned_cols=503 Identities=15% Similarity=0.181 Sum_probs=361.3
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCC-CCCeeEEEeeccCCccEEEEEEcCCeEEEEeC
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~ 528 (1135)
--..+|.++||+.+.+ .||.+-.||.|-+|++..+= +...+.++ +..|.+++|.+ +..|++.+.+|.|.-||+
T Consensus 23 ~~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred eeccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEec
Confidence 3456799999999998 68999999999999998753 33455555 46899999983 368999999999999999
Q ss_pred cCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc-cCCceeEEEecCCCCEEEEEe
Q 001159 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 529 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~ 607 (1135)
.+.+....+...++.|++++.+|.+..++.++. +|.+..++...+++.....-. ....+.+++|+|++..+++|+
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999999999999999999999999999998874 778888888877765433222 223799999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEe-----CCC-CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccC
Q 001159 608 DEFQIKFWDMDNMNMLTTVD-----ADG-GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
.||.|++||+.++..+.... ... ...-|+++.|-.++ .|++|...|+|.+||...+ .+.+.+..
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~-------- 243 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSC-------- 243 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhh--------
Confidence 99999999999998777332 111 22346677777555 7899999999999999888 55555443
Q ss_pred CCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccce
Q 001159 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~ 761 (1135)
T Consensus 244 -------------------------------------------------------------------------------- 243 (691)
T KOG2048|consen 244 -------------------------------------------------------------------------------- 243 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCC
Q 001159 762 KALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 841 (1135)
|...| .+++.++++.++++++-|+.+..|...+.... |-.. .....| .
T Consensus 244 ---------h~adV-l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~--------~~r~~h-~ 291 (691)
T KOG2048|consen 244 ---------HDADV-LALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVIN--------SRRDLH-A 291 (691)
T ss_pred ---------hhcce-eEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeee--------ccccCC-c
Confidence 33445 89999999999999999999988866543210 1111 111226 8
Q ss_pred CceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEE-EEEecCCCcEEEEEeCCCcEEEEEcccce--
Q 001159 842 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATF-LAFHPQDNNIIAIGMEDSSVQIYNVRVDE-- 916 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~-- 916 (1135)
..+.+++..++ .+++|+ |.++.+-.....+...... +. ..-.+ +...| .++|..--.+..+.+|.+-+.-
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~-~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~ 366 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQ-KNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQ 366 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEEccccccCchhhhc-cccccccceeecCc--cceEEEEeccccccceeccCcccc
Confidence 89999999887 777777 8888776654422211111 11 11111 22223 3455555557778888776541
Q ss_pred -------eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcE
Q 001159 917 -------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989 (1135)
Q Consensus 917 -------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 989 (1135)
+.+-...-...|.+-+.||||++++.+.- ...+||.++....++...+....... ...+.+.|+-|+..
T Consensus 367 g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k 442 (691)
T KOG2048|consen 367 GEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNK 442 (691)
T ss_pred cccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCce
Confidence 11112223345999999999999987653 34788888765444333333322221 46688999999887
Q ss_pred EEE-E-ecCeEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccc
Q 001159 990 LLV-V-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1064 (1135)
Q Consensus 990 l~~-~-~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1064 (1135)
++. + ....+.+.+. +.+.+..+... +--..|..++.|+||+|||+.+.+|.|.+|++++++.......-
T Consensus 443 ~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl----- 516 (691)
T KOG2048|consen 443 LFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL----- 516 (691)
T ss_pred EEEEecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc-----
Confidence 777 4 5677777777 33333333322 23568999999999999999999999999999998765543211
Q ss_pred cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1065 YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
....+++.++|.+-+.|+.+..|+.++-+|++..+
T Consensus 517 -----n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 517 -----NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred -----CcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 14566888887777899999999999999995433
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=250.89 Aligned_cols=286 Identities=14% Similarity=0.223 Sum_probs=246.4
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. +.++|.++.|+-||+ +..+++.|.+|++|+...|..+++ +.+|...|..++.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~s 68 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAALS 68 (307)
T ss_pred hceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeecccc
Confidence 445555 889999999999999 566777899999999999998876 78999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC--CeeeeeecC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFEG 495 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~ 495 (1135)
.|+..+++|+.|..+.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ .++++.+..
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhh
Confidence 999999999999999999999998877 7889999999999999988 999999999999999875 467888888
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
....|.++.... ..|++||.||++|.||++.+.....+ -+.+|++++|++|++..++++. ++++++.|-.
T Consensus 144 a~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~ 213 (307)
T KOG0316|consen 144 AKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLLDKE 213 (307)
T ss_pred hcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeecccc
Confidence 888999998743 67999999999999999977655433 4568999999999999998876 8899999999
Q ss_pred CCeEEEEeecccCCce-eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 576 EGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v-~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
+|+++..+++|..... ..++++.....+++|++||.|++||+.....+..+..+... .|.+++++|.-..++++...
T Consensus 214 tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~~~- 291 (307)
T KOG0316|consen 214 TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITATGH- 291 (307)
T ss_pred hhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEecCC-
Confidence 9999999999987432 24567777789999999999999999999999998876552 47899999977777776554
Q ss_pred cEEEEEc
Q 001159 655 GIKILAN 661 (1135)
Q Consensus 655 ~i~iwd~ 661 (1135)
.+..|--
T Consensus 292 ~~~~~~~ 298 (307)
T KOG0316|consen 292 GDLFWYQ 298 (307)
T ss_pred ceeceee
Confidence 4556643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=273.51 Aligned_cols=645 Identities=16% Similarity=0.195 Sum_probs=362.2
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
+..+. |++.|+.+.|||-...|||+|+.|..|+||.+..|-... ..-+..++.+..-.|-|+.|+|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeeccc
Confidence 44444 999999999999776799999999999999998543211 1122333555667899999999
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHE 497 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~ 497 (1135)
...-|...+..|.++|||+.+++.+. ++.+|...|.++.|+.||. ++++.+.|+.|+|||.+. ++.++..++|.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccc
Confidence 88877777788999999999987655 7889999999999999999 999999999999999874 67778888887
Q ss_pred CC-eeEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCce-eEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 498 AP-VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSR-VDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 498 ~~-v~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~-~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+. -..+.|..+ -..|++.+.+ ..|++||.+..... ..+... ...|.---|.||.++|+.++ .++.++.
T Consensus 214 ~~rdsRv~w~Gn--~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l~ 288 (1012)
T KOG1445|consen 214 GMRDSRVLWAGN--WERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKLF 288 (1012)
T ss_pred cchhheeeeccc--hhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceEE
Confidence 64 334556433 2467766654 56999998875543 233222 22455567899999998876 3677888
Q ss_pred EEECCCCeEE--EEeecccCCceeEEEecCCCCEEEEEeC-CC-------------------------------------
Q 001159 571 EWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF------------------------------------- 610 (1135)
Q Consensus 571 ~wd~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg------------------------------------- 610 (1135)
.+.+...+.. ..+...-.......++-|....-+..++ +.
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p 368 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP 368 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence 8887654321 1111000000011111111110000000 00
Q ss_pred --eEEEEECCCCceEEEEe------CCCC----------------CCCcceEEEcCCCCEEEEEECCCcEEEEEcC----
Q 001159 611 --QIKFWDMDNMNMLTTVD------ADGG----------------LPASPRLRFNKEGSLLAVTTSDNGIKILANS---- 662 (1135)
Q Consensus 611 --~i~iwd~~~~~~~~~~~------~~~~----------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---- 662 (1135)
.-.-|=-.+.+.++... .|+. ...|......|...-=.....++ +=|..
T Consensus 369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~---~Pd~~~qpa 445 (1012)
T KOG1445|consen 369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNN---VPDVQEQPA 445 (1012)
T ss_pred CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccC---CCccccCCC
Confidence 00001111111111111 0000 00000000000000000000000 00000
Q ss_pred --CCchhhhhc---------------------cccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCC-
Q 001159 663 --DGVRLLRML---------------------EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP- 718 (1135)
Q Consensus 663 --~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 718 (1135)
.+ ...+.+ ++....+......+..-.++.-.+ ....+...-.+.|.-.+ ..|
T Consensus 446 V~~~-~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~p--lt~~~s~~s~~~P~~~k-svPe 521 (1012)
T KOG1445|consen 446 VPKK-EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTP--LTDSVSTPSVVGPAFGK-SVPE 521 (1012)
T ss_pred cCcc-hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcc--cccccccccccCccccc-cCCC
Confidence 00 000000 000000000000000000000000 00000000001111000 001
Q ss_pred ---CccccccccCCCCcccccccccccccccccccccCCcCCccc------ee--EeecCCcccccceEEEEEEecCCcc
Q 001159 719 ---AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ------IK--ALRLPDSIAASKVVVRLIYTNSGLS 787 (1135)
Q Consensus 719 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~------~~--~~~~~~~~~~~~i~~~~~~s~dg~~ 787 (1135)
......+...+.++....-.-..+--|.+.-+.-..+....+ ++ ...+++ .+--|+.+..+
T Consensus 522 ~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg--------EsnGfcan~~r 593 (1012)
T KOG1445|consen 522 QPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG--------ESNGFCANNKR 593 (1012)
T ss_pred CCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC--------ccCceeeccce
Confidence 111111111111111111000001112222222111111110 01 111122 22234445554
Q ss_pred eeE--ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEEEEEe-CCe
Q 001159 788 LLA--LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGK 863 (1135)
Q Consensus 788 l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~la~~~-dg~ 863 (1135)
+++ .+..|.|-||++......|++-. .+.-. ...|+.+.|.| |...||++. ||.
T Consensus 594 vAVPL~g~gG~iai~el~~PGrLPDgv~---------------------p~l~N-gt~vtDl~WdPFD~~rLAVa~ddg~ 651 (1012)
T KOG1445|consen 594 VAVPLAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFN-GTLVTDLHWDPFDDERLAVATDDGQ 651 (1012)
T ss_pred EEEEecCCCceEEEEEcCCCCCCCcccc---------------------ccccc-CceeeecccCCCChHHeeecccCce
Confidence 443 35578999999876555444432 22213 77899999999 778888888 899
Q ss_pred EEEEECCCc-------cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC
Q 001159 864 VSLFNMMTF-------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 864 i~vwd~~~~-------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 936 (1135)
|++|.+..+ .....+.+|...|+++.|+|--...||+++.|-+|++||+.+++....|.+|.+.|.+++||||
T Consensus 652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 999999754 3346678899999999999977889999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-E----ecCeEEEEec-C--Ccee
Q 001159 937 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V----HESQISVYDS-K--LECS 1008 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~----~d~~v~vwd~-~--~~~~ 1008 (1135)
|+.+|+++.||+|++|+..+++. .+..-.+... ..-..+.|..||+++++ + +.++|.+||. + +..+
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~----pv~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQ----PVYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCC----ccccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 99999999999999999988763 2222222221 34467889999999888 4 3567999998 2 2222
Q ss_pred eccCCCCCCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEECCCcee
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~-~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
....... .-.+.--.+.+|.. ++++|-.|..|.+|++-....
T Consensus 806 ~t~~lDv--aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 806 YTQVLDV--APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred eeeeecc--cCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 2111100 11122223456655 467888999999999875544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=277.94 Aligned_cols=241 Identities=17% Similarity=0.260 Sum_probs=216.3
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
-+..|..|.|.|+|+.|++|+..|...+|+..+- .-...+++|..+|.++.|++++. +++||+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 4567999999999999999999999999997542 22225678999999999999999 899999999999999654
Q ss_pred CeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001159 487 GRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 487 ~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
. .++.+.+|. ..|.+++|+|.+ ..++++|.||+|+|||....+....+.+|+-.|.++.|+|.-..+++++.
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk---- 242 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK---- 242 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----
Confidence 4 345555554 899999999965 79999999999999999999998999999999999999999999999974
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 644 (1135)
|..|++||.++|.++.++.+|.. .|..+.|++++++|+++|.|..++++|+++.+.+.++++|.. .|.++.|+| ..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccc
Confidence 66999999999999999999998 999999999999999999999999999999999999988755 799999999 67
Q ss_pred CEEEEEECCCcEEEEEcC
Q 001159 645 SLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~~ 662 (1135)
.++.+|+.||.|..|.+.
T Consensus 320 ~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred cceeeccCCCceEEEecc
Confidence 799999999999999886
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=302.83 Aligned_cols=291 Identities=26% Similarity=0.432 Sum_probs=245.3
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
+...+ .++.|+++|+.+++++.++.+++|+...... .... .+.+ | ...|..++|+
T Consensus 158 ~~~sv-~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l~~--h-~~~v~~~~fs 212 (456)
T KOG0266|consen 158 ECPSV-TCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-ELSG--H-TRGVSDVAFS 212 (456)
T ss_pred ccCce-EEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cccc--c-ccceeeeEEC
Confidence 35666 9999999999999999999999997632110 0111 1223 7 9999999999
Q ss_pred cCCCEEEEEe-CCeEEEEEC-CCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCe
Q 001159 851 KNDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 928 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i 928 (1135)
||++++++++ |++|+|||+ ..+.+++++++|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 9999999999 899999999 66699999999999999999999 67999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEec-CCc
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLE 1006 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~ 1006 (1135)
++++|++|+.+|++++.|+.|++||+.++... ++....++.... .++.++|+|++++++++ .|+.+++||+ .+.
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 99999999999999999999999999998844 344555665544 78999999999999995 6779999999 688
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
++..+..+..-...+.+..++++++++++|+.|+.|++|++.++..++.+..|. ......+.++| ..+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---------~~~~~~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---------KAAVSDLSSHP-TENLI 437 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC---------CCceeccccCC-CcCee
Confidence 887776553211255666778899999999999999999999999999888772 13345677888 67899
Q ss_pred EEEe--cCCcEEEEecC
Q 001159 1087 ALGM--SDGAVHVVEPS 1101 (1135)
Q Consensus 1087 ~sg~--~dg~v~~W~~~ 1101 (1135)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9988 78999999864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=270.80 Aligned_cols=272 Identities=22% Similarity=0.330 Sum_probs=234.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.|+.+..+ .+++|..|++|+|||.++..++. ++.||++.|.|+.| |.+.|++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEEe
Confidence 457999998643 47899999999999998877655 38899999999999 6779999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe---eeeeecCCCCCeeE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~ 502 (1135)
|+.|.+|++||+++++++. ++-+|...|..+.|+.. +++|++.|.+|.+||+.... +.+.+.||...|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999998877 77789999999999843 89999999999999998764 34567899999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.|+. ++++++|.|.+|++|++.+.+.+.++.+|...|.|+.+ .++++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 98842 79999999999999999999999999999999999887 4788888875 88999999999999999
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE---------EEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+.||.. -|.++.|. .+.+++|+.||+|++||+..+... .++. .+.+.|..+.|. ...+++++.|
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEeccCC
Confidence 999998 89999996 578999999999999999875432 2222 233467777774 5578899999
Q ss_pred CcEEEEEcCCCc
Q 001159 654 NGIKILANSDGV 665 (1135)
Q Consensus 654 g~i~iwd~~~~~ 665 (1135)
.+|.|||..++.
T Consensus 469 dtILiWdFl~~~ 480 (499)
T KOG0281|consen 469 DTILIWDFLNGP 480 (499)
T ss_pred CeEEEEEcCCCC
Confidence 999999998873
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=285.79 Aligned_cols=282 Identities=24% Similarity=0.409 Sum_probs=252.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|.++|++++|+|+++ ++++|+.+|.|.+|++.+++.... +..|...+.++.|+|++++|+
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999998 688898999999999988764332 457888999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+++.||.|++||+.+++... .+..|...|.++.|++++. ++++++.|+.|++||+.+++....+..|...|.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999875544 5678998999999999977 788888899999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|.+ .++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|++||.++++.+..+.
T Consensus 143 ~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 99874 78888888999999999988888888888889999999999999998874 7889999999999998887
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.+.. .+.++.|++++.++++++.||.|++|++.+++....+..+. ..+.+++|++++.++++++.||.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7776 89999999998888888889999999999988888887554 3799999999999999999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=282.17 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=250.7
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCCCcceE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
.|...+.++. |+..|+++.|.|-.-+||++|+.|+.|+||++.. +.++++ +.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3667788888 9999999999994335999999999999999987 666654 789999999
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+++|+++|..+.+++.|+.|++||+++|.+.. .+. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~---~f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLS---RFH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEE---EEe-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998765 332 3446899999999955 789999999999999999999999
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+..|-+.|..+.|.+.+ .++++.+.|+++++|+.+..-.+.. ...+.....++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999998755 8999999999999999987766543 3334456788999999999998765 778999
Q ss_pred EECCCC---eEEEEeecccCCc-eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCE
Q 001159 572 WNESEG---AIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1135)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~~-v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 646 (1135)
+..... ...+.|.+|.... -..+.|||||.+|++|+.||.+.+||.++-+++..+..|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 886532 2345677776432 34589999999999999999999999999999999998854 789999999 5678
Q ss_pred EEEEECCCcEEEEE
Q 001159 647 LAVTTSDNGIKILA 660 (1135)
Q Consensus 647 l~~~~~dg~i~iwd 660 (1135)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=280.69 Aligned_cols=291 Identities=19% Similarity=0.351 Sum_probs=249.4
Q ss_pred eeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 446 HLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
...+.+|...|+++.|.| .+. +|++++.|+.|+||++.. ++++++|.+|..+|.+++|+..+ ..++++|.|+.|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g--~~fLS~sfD~~l 282 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG--TSFLSASFDRFL 282 (503)
T ss_pred eeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC--Ceeeeeecceee
Confidence 447889999999999999 565 899999999999999986 99999999999999999997654 899999999999
Q ss_pred EEEeCcCCCceeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCE
Q 001159 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 602 (1135)
++||++++++...+.. +..++|+.|.|++ +.+++|+. ++.|+.||+++++.++.+..|-+ .|..+.|-++|++
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCce
Confidence 9999999998887763 4578899999999 56666665 88999999999999999998888 8999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchh--hhhcccccccccc
Q 001159 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL--LRMLEGRAMDKNR 680 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~ 680 (1135)
+++.++|+.++||+....-+++.+.... .....++..+|++++++.-+.|+.|.++.+....+. .+.+++|.
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~----- 430 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS----- 430 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-----
Confidence 9999999999999999877766554322 226789999999999999999999999986433110 11111110
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
-
T Consensus 431 ------------------------------------------------------------------------------v- 431 (503)
T KOG0282|consen 431 ------------------------------------------------------------------------------V- 431 (503)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
.+.-..+.|||||++|++|+ ||.+.+||..+-+++..+++|...+..+.|+|.....+|++++||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 34455689999999999998 999999999999999999999999999999998888999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=244.90 Aligned_cols=242 Identities=16% Similarity=0.291 Sum_probs=207.8
Q ss_pred ccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEe-ecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l-~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+.+|.+.|..++|+|- |..||+|+.|..|+||+...+....+...+ .+|+..|.+++|+|.|+ +|++||.|.++.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~I 87 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVI 87 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEE
Confidence 6789999999999998 999999999999999999965544444333 37999999999999999 9999999999999
Q ss_pred EEcCC--CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC---ceeEecCCCCcEEEEEEcCCCCEE
Q 001159 482 WDVVA--GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 482 wd~~~--~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
|.-.. .+++.++.||...|.+++|++++ .+|++++.|+.|-||.+.... +...+..|...|..+.|+|....|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 98553 47889999999999999998755 899999999999999987543 445788999999999999999999
Q ss_pred EEEecCCCCCCeEEEEECC---CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNES---EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
++++. |.+|++|+-. .-.+++++.+|.. .|.+++|++.|..|++++.|++++||...+ .+.. .+..
T Consensus 166 ~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~-~~sr 234 (312)
T KOG0645|consen 166 FSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG-MHSR 234 (312)
T ss_pred EEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch-hccc
Confidence 99987 8899999866 3467899999998 899999999999999999999999998652 1211 2234
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.++.+.|. ...|++++.|+.|++|.-.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEec
Confidence 68889998 4589999999999999754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=264.11 Aligned_cols=290 Identities=19% Similarity=0.283 Sum_probs=247.8
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .+..|+|||++|++++-||.|.+|++.+++...+-+..+. ....+ + ...|.|+.||.|
T Consensus 214 Sh~-EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fMM--------m-d~aVlci~FSRD 274 (508)
T KOG0275|consen 214 SHV-ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFMM--------M-DDAVLCISFSRD 274 (508)
T ss_pred cch-hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cceee--------c-ccceEEEeeccc
Confidence 344 8899999999999999999999999877654333332221 11111 4 889999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCccEEEEEe-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEE
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
...+|+|+ ||+|+||.+.+|.|++.|. +|+..|+|+.||. |+..+.+++.|.++++.-+.+|+++++++||++-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 7999999999999 8888889999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-cEEEEE-ecCeEEEEecCCcee
Q 001159 931 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLECS 1008 (1135)
Q Consensus 931 l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~-~d~~v~vwd~~~~~~ 1008 (1135)
..|++||..+++++.||+|++|+.++.+++.+.... +. ..+|..+..-|.+ .+++++ ..++|.|-++.++.+
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~---d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GT---DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CC---cccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 999999999999999999999999998865543211 11 2567777777655 456665 578899999999999
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
+.+.......+...+++.||.|.++.+.++|+.++.|.+.+|.+-.++..|+ ..++.+..+| ..++|++
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNllAs 496 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLLAS 496 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchhhh
Confidence 9998877667788899999999999999999999999999999999888764 4566788899 6689999
Q ss_pred EecCCcEEEEe
Q 001159 1089 GMSDGAVHVVE 1099 (1135)
Q Consensus 1089 g~~dg~v~~W~ 1099 (1135)
-++||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=260.79 Aligned_cols=232 Identities=16% Similarity=0.299 Sum_probs=206.9
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....|+|+.+ |...+++|..|++|+|||.++-.+.+ .+.||++.|.|+.|. .+ .|++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3456999998 77789999999999999999876665 788999999999995 44 899999999999999999
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce---eEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
|+++.++-+|...|..+.|+. .+++++|.|.+|.+||+.....+ ..+.+|...|..+.|+. +++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 999999999999999999853 69999999999999999887643 36788999999999864 58998864
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
|.+|++|+..+++.++++.+|.. .|.|+.+. ++++++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred --CceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 89999999999999999999988 78877764 78999999999999999999999999998866 68999996
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001159 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+.+++|+.||+|+|||+.++
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 568999999999999999877
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=309.39 Aligned_cols=291 Identities=14% Similarity=0.161 Sum_probs=238.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|.+.|++++|+|+|+ ++|+|+.|+.|+||++........ . ...+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 789999999999999864211000 0 00000012 2346799999988 57899
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6789999999999997 666 8999999999999999999998888754 67999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-----
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 576 (1135)
+.|++. +|.++++|+.||.|++||++... ....+.+|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 999653 45899999999999999998765 455778899999999997 7788988875 88999999974
Q ss_pred -CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC-----------CCCCCCcceEEEcCCC
Q 001159 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPASPRLRFNKEG 644 (1135)
Q Consensus 577 -~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~ 644 (1135)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+.....++..+.. ..+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888877 789999999999999999999999999876654433321 1223458999999999
Q ss_pred CEEEEEECCCcEEEEEc
Q 001159 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~ 661 (1135)
.+|++|+.+|.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=238.59 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=221.5
Q ss_pred hhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.++..|.++|.++.|+-||+|.++++.|.+|++|+...+..++ ++.+|...|..++.+.|+. .|++|+.|+.|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3467899999999999999999999999999999999998777 7889999999999999998 7999999999999
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
||+.+|+.++.|.+|.+.|+.+.|+... ..+++|+.|.++++||-++.. +++.+......|.++..+ +..+++|
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999997655 899999999999999998754 455566666688888765 4567777
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ||+++.||++.|.....+-++ +|++++|+++++..++++.|+++++.|-.+|+.++.+.+|.....=..++
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 75 899999999999988877776 79999999999999999999999999999999999999987765556778
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.....+++|+.||.|.+||+.+.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 8888889999999999999999877
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=253.94 Aligned_cols=291 Identities=18% Similarity=0.333 Sum_probs=243.4
Q ss_pred CcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 334 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+.++...+.|.+.|.++... ++ .+.+|++||.++|||.... ...+ +.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk-~~~~-------------------~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGK-SIKT-------------------IVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCc-eEEE-------------------EecCCcceee
Confidence 3567778888899999999999 44 5779999999999998744 3332 6799999999
Q ss_pred EEEcCCCC---eEEEEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---
Q 001159 414 CVWGPDGL---MLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1135)
Q Consensus 414 v~~spd~~---~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--- 486 (1135)
++|--... .+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|.||+..+
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 88855333 5999999999999999877542 22223459999999999999999 899999999999999321
Q ss_pred ----------------------CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcE
Q 001159 487 ----------------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 487 ----------------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 544 (1135)
+.++-++.||..+|.++.|.+. ..+++++.|.+|+.||+.+++....+.. +..+
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 1245678899999999999873 6899999999999999999988877664 4578
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe---EEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.++.++|..++|++++. +..|++||++++. ...+|.+|.+ .|.++.|+|... .|++++.|+++++||+++.
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999986 8889999999753 4578899998 999999999765 5677999999999999987
Q ss_pred c-eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 621 N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 621 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+ ++..+..|.. .|.++.|+. +..+++|+.|++|+|+.-
T Consensus 379 k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 8888887744 799999975 669999999999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=243.54 Aligned_cols=284 Identities=17% Similarity=0.281 Sum_probs=252.4
Q ss_pred ecCCCCeeEEEEec---CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 343 LNQGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp---~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
-.|..+|-.++||| +| ++|++++.||.-.+-+-++|..+.+ +.||.+.|.+..+..+
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCch
Confidence 34888999999985 77 6899999999998888888888775 7899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA 498 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~ 498 (1135)
....|+++.|-+.++||.-+|..+. .+ .|..-|.+++|+.|.. +|++|+.++.++|||++..+ +...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998776 44 4888899999999999 89999999999999998654 4568899999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|..+.|.... +.+++.+.|++||+||.+++..+..+.. ...|+++.++++|++|..+. .+.|..||..+..
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999998765 7899999999999999999988877663 45789999999999988764 5579999999999
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE-eCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
+++.++... .|.+..++|+...+++|++|..++.||..+++.+..+ ++| ..+|.|+.|+|+|...++|+.||+|+
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCceEE
Confidence 999888766 5889999999999999999999999999999999886 544 45899999999999999999999999
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
+|....+
T Consensus 293 lWQt~~~ 299 (334)
T KOG0278|consen 293 LWQTTPG 299 (334)
T ss_pred EEEecCC
Confidence 9988666
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=270.89 Aligned_cols=247 Identities=23% Similarity=0.412 Sum_probs=221.4
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|..+|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 6678999999999999998 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+..|...|.++.|++.. .++++++.||.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 99988888999999999999998863 78888888999999999988888888888889999999999888888753
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+.. .+.++.|+|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 78899999999999988887776 899999999999999999999999999999888888765543 7899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001159 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.++++++.+|.+++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=254.38 Aligned_cols=665 Identities=13% Similarity=0.165 Sum_probs=360.4
Q ss_pred hccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCce---eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..+-.. .....+.+..-.|.++.|.|.... +++++ .-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 3788999999999999 6779999999999999999854321 111223333447899999998774 45555 4789
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-eEecCCCC-cEEEEEEcCCCCEE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~-~i~~~~~s~~~~~l 556 (1135)
++|||+.+++.+..+.+|...|.++.|+. ||.++++.+.|+.|+|||.+..... ....+|++ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999965 5699999999999999999876543 44455554 44566777766688
Q ss_pred EEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEE--EeCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTT--VDADGGL 632 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~ 632 (1135)
++.+.+......|++||.+. +..++++.......|.---|.||.+.++.++ .+.++.++.+...++... +.....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 87776655677899999885 4456665554443566667899988776654 677888888776543211 111000
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC----------chhhhhc---------------------cccccccccC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG----------VRLLRML---------------------EGRAMDKNRC 681 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~---------------------~~~~~~~~~~ 681 (1135)
......++-|...+-+..+. ..+++.+... .+.++.| .+....+..+
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKv 386 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKV 386 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCcccccccc
Confidence 00112222222111111111 0111111000 0001100 0000000000
Q ss_pred CCCC----------CCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccc
Q 001159 682 PSEP----------ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 682 ~~~~----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~ 751 (1135)
...+ .....+.....++...+ .+.... |......-...+.+-.......+. ....++-.+
T Consensus 387 Sl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v---~~ppaa------P~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~ 456 (1012)
T KOG1445|consen 387 SLAPAQRSHSPPPPEPVPTPKVAQTPSFVPV---PTPPAA------PRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELD 456 (1012)
T ss_pred ccCchhccCCCCCCCCCCCcccccCCCCccc---cCCCCC------CCccccccccccCCCccccCCCcC-cchhhhhhc
Confidence 0000 00000000001100000 000000 000000000000000000111111 111111111
Q ss_pred cCCcCCccceeEe--ec-CCcccccceEEEEEEecCCcceeE------ecccceeeeEEeccccCCC------CCccc-c
Q 001159 752 IPDISDPSQIKAL--RL-PDSIAASKVVVRLIYTNSGLSLLA------LASNAVHKLWKWQRTERNP------SGKAT-A 815 (1135)
Q Consensus 752 ~~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~~s~dg~~l~~------~~~dg~i~iw~~~~~~~~~------~~~~~-~ 815 (1135)
............- .. ...+..+.+ .. .+|....++- ..+-.+..+..-..++..| .+... +
T Consensus 457 ~~~~E~~~g~~~~~~dad~~~g~sS~~-s~--~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sa 533 (1012)
T KOG1445|consen 457 YRPYEKENGVHTPNADADSTQGNSSPI-ST--ISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISA 533 (1012)
T ss_pred ccccccccCccCCCcccccccCCCCCc-cc--cCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccc
Confidence 1110000000000 00 000000000 00 0000000000 0000000000000000000 00000 0
Q ss_pred cc------c----------CeeecCCCCcceec-----cCCCCCCCCCceEEEEeecCCCEEEEE---eCCeEEEEECCC
Q 001159 816 NV------A----------PQLWQPPSGTLMTN-----DINESKPTEESAACIALSKNDSYVMSA---SGGKVSLFNMMT 871 (1135)
Q Consensus 816 ~~------~----------~~~~~~~~~~~~~~-----~~~~~~h~~~~i~~l~~s~dg~~la~~---~dg~i~vwd~~~ 871 (1135)
+. . +.-+.-..|+.... .+....- .-+-.+--|..+.+++|+- +.|.|.||++..
T Consensus 534 t~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~-~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~ 612 (1012)
T KOG1445|consen 534 TNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT-RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNE 612 (1012)
T ss_pred cccccccccccccceeeccchheeeccCccccchhhhhhhhcccc-cCCCccCceeeccceEEEEecCCCceEEEEEcCC
Confidence 00 0 00000000100000 0000000 1111223355677777754 378999999874
Q ss_pred -ccEEEE-EeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-------eeeEEecCcCCCeEEEEEcCC-CCe
Q 001159 872 -FKVMTM-FMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-------EVKTKLKGHQNRITGLAFSPT-LNA 939 (1135)
Q Consensus 872 -~~~~~~-~~~--h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~i~~l~~s~d-~~~ 939 (1135)
|++.-. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ ++-..+.+|...|+++.|+|- ...
T Consensus 613 PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv 692 (1012)
T KOG1445|consen 613 PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV 692 (1012)
T ss_pred CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence 332211 111 34579999999999999999999999999998754 345678899999999999995 468
Q ss_pred EEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCC
Q 001159 940 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALP 1018 (1135)
Q Consensus 940 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~ 1018 (1135)
|++++.|.+|++||+.+.+ ....+.||. +.|..++|||||+.+|+ |.|++|+||+................
T Consensus 693 La~asyd~Ti~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg 764 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG 764 (1012)
T ss_pred hhhhhccceeeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc
Confidence 9999999999999999877 344567777 79999999999999999 89999999999322222222211113
Q ss_pred CCEEEEEEeeCCCEEEEEeCCC----eEEEEECCCce--eeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC
Q 001159 1019 APISSAIYSCDGLLVYAGFCDG----AIGVFDAETLR--FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD 1092 (1135)
Q Consensus 1019 ~~i~~~~~s~d~~~l~~~~~dg----~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 1092 (1135)
..--.+.|.-||+++++.+.|. .|.+||..+.. .+++.... ..-.++.-.|.++.+.+++||-.|
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vaps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAPSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccCccccccccCCCceEEEecCCC
Confidence 3445678999999998887765 58899987643 33332211 112334445666667788999999
Q ss_pred CcEEEEecCCCcc
Q 001159 1093 GAVHVVEPSDAEL 1105 (1135)
Q Consensus 1093 g~v~~W~~~~~~~ 1105 (1135)
..|.+|.+.....
T Consensus 836 ~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 836 RFVNMYEVIYESP 848 (1012)
T ss_pred ceEEEEEecCCCc
Confidence 9999999876553
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=258.22 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=253.2
Q ss_pred CCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 333 d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+..|......+. |.+.|..+.|-++.. .|++|+.|..|++|++...+.-. ...+.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 445555666666 899999999999976 58999999999999998766221 11267888999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
+++.|.++++++++++.|+.+++|++....... +|.||.+.|+++.|..... .+++|+.|.+|++||+....|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876555 7889999999999988776 59999999999999999999888
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
++- ....+..|+..+ ..+++|-.|++|++||+++.........++ .|+++..++++..|.+++. |.++.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 334566666542 678999999999999999999988888776 9999999999999999875 778999
Q ss_pred EECCCCeEEEEeeccc---CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
.|+++......+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999999888876532 2247789999999999999999999999999999999998776655799999999999999
Q ss_pred EEECCCcEEEE
Q 001159 649 VTTSDNGIKIL 659 (1135)
Q Consensus 649 ~~~~dg~i~iw 659 (1135)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=255.27 Aligned_cols=283 Identities=18% Similarity=0.273 Sum_probs=241.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
..+.|.+++|||..++=+|+.+ .-.+.||+..+.....+ +..-...|+++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3468999999997765444433 34899999887655432 334567799999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644444 67899999999999998876 899999999999999999987778999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEe
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 583 (1135)
|+|..+ .+++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ ...|++||+.+|. .+..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 999765 7999999999999999999865555556889999999999999999987 5679999999655 44555
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
..|+. .|+|+++..++..|++++-|+.|++||+.+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 55776 99999999999999999999999999999999999987653 6899999999999999999999887643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=299.70 Aligned_cols=271 Identities=14% Similarity=0.195 Sum_probs=218.3
Q ss_pred cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCC----Cce
Q 001159 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GEL 443 (1135)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~----~~~ 443 (1135)
+|.+++|+......... .....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888775433211 001114469999999999999999999999999999997642 111
Q ss_pred e-eeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCe
Q 001159 444 R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1135)
Q Consensus 444 ~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~ 522 (1135)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|+|. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 4567999999986433 7999999999999999999999999999999999999874 3479999999999
Q ss_pred EEEEeCcCCCceeEecCCCCcEEEEEEc-CCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCC
Q 001159 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 523 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|++||+.+......+..+ ..+.++.|+ +++.++++++. ++.|++||++++. .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777776644 578899995 57899999875 8899999998766 4667778877 89999997 67
Q ss_pred CEEEEEeCCCeEEEEECCCC------ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 601 NRFLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++++++.|++|++||+..+ +++..+.+|.. .+.+++|++++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 56677776644 6889999999999999999999999997654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=220.02 Aligned_cols=310 Identities=16% Similarity=0.252 Sum_probs=243.4
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+++.++.....|.+|+|+|.|. +.|+|+...+.+|..+..-..++.. .+.......+.....+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEe
Confidence 45677777888999999999998 8899999999998876543222110 000000011112234679999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCC--CceeeeeEeecccCCEEEEEEecC---CCeEEEEEEc-CCCcEEEEEcCCCeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPT--GELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~--~~~~~~~~l~~h~~~v~~v~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~ 490 (1135)
||+|.+||+|++|.+|++.-.+.. .......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 999999999999999999766543 333344467889999999999754 222 566655 5788999999999999
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC-------CCCcEEEEEEcCCCCEEEEEecCC
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+.+|.+.|.++.- . +|.++++|+.|.+|++||++-..++..+.. ....|.+++..|.|++|+++..
T Consensus 177 ~a~sghtghilalys-w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALYS-W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEEE-e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 999999999998852 2 348999999999999999998877765432 1257999999999999999865
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC--c--eEEEEeCCCCCCCcceEE
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--N--MLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~--~--~~~~~~~~~~~~~v~~~~ 639 (1135)
|....+||++.++.++.|..|.. .|+++.|+|...++++++.|..|++-|+... . ++..... +...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e--hkdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE--HKDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe--ccCceEEEE
Confidence 77899999999999999999988 8999999999999999999999999998741 1 2223333 345788899
Q ss_pred EcCCCCEEEEEECCCcEEEEEcC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
|+|..--+++.+.|.++.+|-+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99998889999999999999753
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=276.27 Aligned_cols=306 Identities=16% Similarity=0.261 Sum_probs=251.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
++..|.+++.+|||. .+|||+ .||.+.||+.+.--... ..++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 689999 99999999976421100 011111 12222335679999999999999999
Q ss_pred EEEEeCCCeEEEEEeCC----------C-----CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 423 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
||+|++|+.|.||.... | +..+....+.+|...|.+++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 12345668899999999999999999 9999999999999999999
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC------CCcEEEEEEcCCCCEEEEEec
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
+.+.++.+|.+.|..+.|.|.+ +++++-+.|++|++|++.+-+....+..+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998876 99999999999999997776665555443 236788999999999998876
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC-----CC------------EEEEEeCCCeEEEEECCCCceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RN------------RFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|+.|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 556677899999988888999999999 9999999872 11 46779999999999998888776
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+..-.. ..|..++|+|||..|++++.||+|.++..+..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6543322 37999999999999999999999999998654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=233.55 Aligned_cols=291 Identities=16% Similarity=0.303 Sum_probs=248.3
Q ss_pred ceeEecCCCCcEEEEEEcC---CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC
Q 001159 533 SRVDYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d 609 (1135)
......+|..+|..++||| +|-+|++++. |+.-.+-+-.+|.-+.+|.+|.+ .|.+.+++.+....++++.|
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaad 80 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAAD 80 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhccc
Confidence 3456677888999999976 7888998874 67777888889999999999998 89999999888888899999
Q ss_pred CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCC
Q 001159 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1135)
-+-++||.-+|..+..+.. .+ -|.+++|+.|.++|++|+.+..+||||++........+.+
T Consensus 81 ftakvw~a~tgdelhsf~h-kh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g---------------- 141 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFEH-KH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG---------------- 141 (334)
T ss_pred chhhhhhhhhhhhhhhhhh-hh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC----------------
Confidence 9999999999999988863 33 6899999999999999999999999999877544444444
Q ss_pred CcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCc
Q 001159 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1135)
Q Consensus 690 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~ 769 (1135)
T Consensus 142 -------------------------------------------------------------------------------- 141 (334)
T KOG0278|consen 142 -------------------------------------------------------------------------------- 141 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEe
Q 001159 770 IAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
|...| ..+.|....+.+++.+.|++||+||.. ++..+... .. ..+|+++.+
T Consensus 142 -htg~I-r~v~wc~eD~~iLSSadd~tVRLWD~r----------------------Tgt~v~sL-~~----~s~VtSlEv 192 (334)
T KOG0278|consen 142 -HTGGI-RTVLWCHEDKCILSSADDKTVRLWDHR----------------------TGTEVQSL-EF----NSPVTSLEV 192 (334)
T ss_pred -CCCcc-eeEEEeccCceEEeeccCCceEEEEec----------------------cCcEEEEE-ec----CCCCcceee
Confidence 44445 778888888889999999999999654 44433321 11 678999999
Q ss_pred ecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-cCcCCCe
Q 001159 850 SKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRI 928 (1135)
Q Consensus 850 s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i 928 (1135)
++||++|.++..+.|++||..+..+++.++.+ ..|.+..++| +...++.|+.|..++.||..+++.+..+ ++|-++|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpV 270 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPV 270 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCce
Confidence 99999999999999999999999999888744 4789999999 7789999999999999999999999886 8999999
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCc
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
-||.|+|||...++||.||+|++|.+..++
T Consensus 271 hcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 271 HCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999999999999887665
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=229.19 Aligned_cols=284 Identities=16% Similarity=0.261 Sum_probs=228.7
Q ss_pred eEEEEec--CCCeEEEEE-----eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CC
Q 001159 350 MSMDFHP--QQQTILLVG-----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GL 421 (1135)
Q Consensus 350 ~~v~~sp--~g~~lla~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~ 421 (1135)
.++.||| .++..+|++ ...|.+.|-++..++.+.. +..+ .-.+.+..++||++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCcc
Confidence 5778888 444333333 2457899999875444321 1111 24567999999995 55
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
.+++++.||+++|||..... .++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.+.+|.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 78889999999999965433 355578899999999999997776 677889999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE-EEEEecCCCCCCeEEEEECCCC-eE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEG-AI 579 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~ 579 (1135)
..+|+|... +.++++|.|+++++||++.......+..|...|.++.|+.-... +++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 999999854 89999999999999999999888889999999999999986655 455553 889999999864 46
Q ss_pred EEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCc-eEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGI 656 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 656 (1135)
+..+.+|.- .|+.+.|||.. ..|++++.|-+++|||...+. .+.+...|.. .|..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 778888776 89999999975 577889999999999998543 4455555544 688899998 78899999999999
Q ss_pred EEEEc
Q 001159 657 KILAN 661 (1135)
Q Consensus 657 ~iwd~ 661 (1135)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=224.11 Aligned_cols=286 Identities=12% Similarity=0.148 Sum_probs=240.7
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
..|+.+++.+.|+.+|. ||+++++|..+.||-..+|+.+.+ +.||.+.|.|++..-+.++
T Consensus 7 ~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred ccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcce
Confidence 34999999999999998 899999999999999999998876 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEE-----cCCCcEEEEEcC-------CCeee
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-----GDDKMIKVWDVV-------AGRKQ 490 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-----~~d~~i~iwd~~-------~~~~~ 490 (1135)
+++|+.|.++++||+++|+++. .+ ....+|..+.|+++|. +++.+ +..+.|.++|++ ..++.
T Consensus 67 liTGSAD~t~kLWDv~tGk~la---~~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLA---TW-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred eeeccccceeEEEEcCCCcEEE---Ee-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 9999999999999999998776 33 3567899999999998 44433 345689999998 44567
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
..+..+...++.+.|.|.+ ++|++|..||.|..||.+++.... ....|...|+.+.+++|..++++++. |.+-
T Consensus 141 ~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtta 214 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTA 214 (327)
T ss_pred EEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccc
Confidence 7888899999999999877 899999999999999999976554 55778889999999999999999975 8889
Q ss_pred EEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEE--------------EECCCCceEEEEeCCCCCCCc
Q 001159 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF--------------WDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i--------------wd~~~~~~~~~~~~~~~~~~v 635 (1135)
++||..+-+.++++.... +|++.+++|-...++.|+.....-+ |++-..+.+..+++| .++|
T Consensus 215 kl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPI 290 (327)
T ss_pred eeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCc
Confidence 999999999999998765 8999999998888888764322222 222222345556655 5599
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++++|+|+|+..++|+.||.|++.-....
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999999999999999866543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=264.01 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=222.9
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las 425 (1135)
..|.....++|+.. +++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| ++++||+
T Consensus 21 ~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 21 LNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred eccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 46777778888764 4556667777888876654221 11111111111234789999999999999 8999999
Q ss_pred EeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 426 AFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999999986532 1234478899999999999998644 799999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc-EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-E
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-I 579 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~ 579 (1135)
+++|+|++ .+|++++.|++|++||+++++....+..|.+. +..+.|.+++..+++++.+...++.|++||+++.. .
T Consensus 173 sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 173 SLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred EEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99999854 89999999999999999998888888877653 45678999988888877655568899999998754 3
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
+.....+....+....|+++++.+++++ .|+.|++||+.+++++....... ..++..++|.|..
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 4444444443566678999999999887 59999999999998877665432 3367888888853
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=221.70 Aligned_cols=235 Identities=14% Similarity=0.203 Sum_probs=204.8
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||..+++.+.++.+|.+|.+|+.|.++.+|-...|+.+. ++.||.+.|+|++..-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998887665 8899999999999999999 89999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-----CCeEEEEeCc-------CCCceeEecCCCCcEEEEEEc
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 550 (1135)
|+.+|+++.+++ -..+|..+.|++.+ ++++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 67789999998865 55555433 3669999988 344566778888999999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|-+++|++|.. +|.|..||.++|.. +.+-..|.. .|+.+++++|..++++++.|.+-++||..+.+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999974 88999999999854 555566666 8999999999999999999999999999999999998754
Q ss_pred CCCCCcceEEEcCCCCEEEEEECC
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 379999999987777777654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=264.34 Aligned_cols=301 Identities=15% Similarity=0.191 Sum_probs=218.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC---CC
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DG 420 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp---d~ 420 (1135)
.|.+.|+++.||+||+ |||+|+.||.|+||.+...+.... .. ......... +. ..+.+.-+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~-~~-----~~~~~~~~~--~~-~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV-AE-----GDSSCMYFE--YN-ANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc-cc-----cccchhhhh--hh-hccccCccccccccccc
Confidence 3899999999999998 799999999999999876433210 00 000000000 00 000011111111 01
Q ss_pred C--eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 421 L--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 421 ~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....|++.|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11111112222221111111113444788999999999999876 79999999999999999999999996 999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|+||+|+|.+| +++++|+.||.||||++...+...-... ..-|++++|.|||++.++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999977 8999999999999999986554443333 368999999999999999987 8899999998877
Q ss_pred EEEEeeccc-------CCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 579 IKRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 579 ~~~~~~~~~-------~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
....+.-+. ...|+.+.|.|.. ..+++.+.|..|||+|.++.+++..+++......=....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 766543221 1269999998744 45888889999999999999999999876555555678999999999999
Q ss_pred ECCCcEEEEEcCCC
Q 001159 651 TSDNGIKILANSDG 664 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~ 664 (1135)
++|..|+||+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=234.68 Aligned_cols=282 Identities=20% Similarity=0.297 Sum_probs=235.5
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC-CccEEEEEEcCCeEEEEeCc
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~iwd~~ 529 (1135)
-|...|.++... ++ .|+||++||.+++|| ..|+..+++.||.++|.+++|.-.+ ....+++++.|.++++|-++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488899999887 45 899999999999999 7899999999999999988876433 22469999999999999888
Q ss_pred CCCcee----EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-------------------------CCeEE
Q 001159 530 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 580 (1135)
Q Consensus 530 ~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 580 (1135)
.+.... ...+|...|.++...++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765443 34589999999999999999999987 8889999931 13456
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.++.||.+ +|.++.|++ ...+++++.|.+|+.||+.++..+.++.... ..+++.++|..++|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 77889988 999999998 6789999999999999999999998887653 579999999999999999999999999
Q ss_pred cCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccc
Q 001159 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
.+++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876610
Q ss_pred ccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCe
Q 001159 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 741 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
.+ ...
T Consensus 335 ---------------------------------s~-v~~----------------------------------------- 339 (423)
T KOG0313|consen 335 ---------------------------------SV-VSQ----------------------------------------- 339 (423)
T ss_pred ---------------------------------ce-eEE-----------------------------------------
Confidence 00 000
Q ss_pred eecCCCCcceeccCCCCCCCCCceEEEEeecCCC-EEEEEe-CCeEEEEECCCcc-EEEEEeCCCCCeEEEEEecCCCcE
Q 001159 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNI 897 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~~ 897 (1135)
.+.+ | .+-|.++.++|... .|++|+ |+++++||+++.+ .+..+.+|.+.|.++.|.. +..
T Consensus 340 ------------s~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~ 402 (423)
T KOG0313|consen 340 ------------SLIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGL 402 (423)
T ss_pred ------------eeec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--Cce
Confidence 0111 6 77888899998554 567777 9999999999877 8999999999999999984 679
Q ss_pred EEEEeCCCcEEEEEc
Q 001159 898 IAIGMEDSSVQIYNV 912 (1135)
Q Consensus 898 lasg~~dg~v~iwd~ 912 (1135)
|++|+.|.+|+|+.-
T Consensus 403 IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 403 IVSGGADNKLRIFKG 417 (423)
T ss_pred EEeccCcceEEEecc
Confidence 999999999999864
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-26 Score=222.83 Aligned_cols=282 Identities=14% Similarity=0.226 Sum_probs=231.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
-.+.|+++.|+++|. ++++++.|.+++|||..+++.+.+ +..++-.|..+.|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 357899999999998 566788899999999999988765 445666788899988777777
Q ss_pred EEeC--CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 425 VAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 s~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
.++. |.+|+..++.+.+.++ -+.||...|.+++.+|-+. .+++++.|++|++||++..++...+.....+ .
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--I 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc--c
Confidence 7766 8899999999998777 7899999999999999988 8999999999999999988887766543333 4
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecC---CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
++|.|. |-++|++...+.|++||++... +-..+.. .....+.+.|||||++|+.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 566665 4788888888899999998753 2333333 3558899999999999998764 778999999999
Q ss_pred eEEEEeecccCCc--eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 578 AIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 578 ~~~~~~~~~~~~~--v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
..+.++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|...++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999999875 344789999999877776655 46
Q ss_pred EEEEEcC
Q 001159 656 IKILANS 662 (1135)
Q Consensus 656 i~iwd~~ 662 (1135)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=245.11 Aligned_cols=297 Identities=19% Similarity=0.266 Sum_probs=225.6
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
|..++|.++++.|.|.++++|+-|..|++||+..-..... ......+. - ...|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~------------------~fr~l~P~--E-~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR------------------SFRQLQPC--E-THQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccch------------------hhhccCcc--c-ccccceeeec
Confidence 4444449999999999999999999999999875322110 01111222 1 5589999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEEEE------------EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVMTM------------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~~~------------~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
+.|..|++.+ ..+.+|+|-........ -+||...++|.+|+|+....+.+++.||++||||+...+.
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888777 78899999876544333 2578999999999998888999999999999999986542
Q ss_pred -eEEec-----CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEE
Q 001159 918 -KTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 991 (1135)
Q Consensus 918 -~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 991 (1135)
+++++ +-.-+++..+|++||+++|+|+.||.|.+|+..+........+. ..|. ....++++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~-~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHL-PGQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--eccC-CCCceeEEEeccccchhh
Confidence 23332 23346899999999999999999999999998654433222222 2333 124799999999999999
Q ss_pred E-EecCeEEEEec-C-CceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeC------CCeEEEEECCCceeeeeeCCceec
Q 001159 992 V-VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC------DGAIGVFDAETLRFRCRIGPSAYI 1062 (1135)
Q Consensus 992 ~-~~d~~v~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~------dg~I~vwd~~~~~~~~~~~~~~~~ 1062 (1135)
+ +.|++++|||+ + .+++..+.... ...+-+.++||||.++|++|+. .|.+++||..+.+.+.++....
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~-- 457 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST-- 457 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC--
Confidence 9 99999999999 3 34444433322 2456789999999999999864 5789999999999999888552
Q ss_pred cccccCCCCccEEEEecCCCCCEEEEEecCCcEEEE-ecCCC
Q 001159 1063 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDA 1103 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W-~~~~~ 1103 (1135)
.+++.+.|+| .=++|..|+.||+++++ |....
T Consensus 458 --------aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 458 --------ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred --------ceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 6678899999 66899999999999886 44443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=264.82 Aligned_cols=283 Identities=17% Similarity=0.288 Sum_probs=248.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...+.+..|. ++ .+++|+.+++|++||..++..+.. .+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56789999999 44 478899999999999999887653 1679999999999988889999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.|.++++||..++.+.. .+.+|...|.++...+. ++++|+.|.+|++|++.++.+++.+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998777 88899999999988654 789999999999999999999999999999999998
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-eEEEEe
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1135)
.+ +.++++|+.|++|++||+.+.+++..+.+|..+|.++.+.+. ..+++|+. |+.|++||++++ +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 85 379999999999999999999999999999999999988766 88999987 788999999999 999999
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.+|.. .+..+.+ .+++|++++.|++|++||..+++++.++... +...|..+++. ...+++++.||.+.+||+.+
T Consensus 410 ~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99987 5554443 5789999999999999999999999999874 33467777665 46889999999999999999
Q ss_pred Cchhhhhc
Q 001159 664 GVRLLRML 671 (1135)
Q Consensus 664 ~~~~~~~~ 671 (1135)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 9 444433
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=229.13 Aligned_cols=312 Identities=17% Similarity=0.217 Sum_probs=243.2
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccc-cCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++-.....|+.++.+.+|||||. ++|+|+.|-.|+|.|++..-... .+.+...+.... .++. ..+..|.+.|+++.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-hPvI-RTlYDH~devn~l~ 179 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-HPVI-RTLYDHVDEVNDLD 179 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-CceE-eehhhccCccccee
Confidence 34445555999999999999998 89999999999999997321100 000000011111 1222 23667999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee--
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 493 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 493 (1135)
|+|....|++|+.|++|+++|+......+....++ ...+|.++.|.|.|. +|+.|.+-.++++||+.+-++...-
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCc
Confidence 99999999999999999999998764433332332 456899999999999 8999999999999999998876543
Q ss_pred -cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-CCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 494 -EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APG-NWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 -~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..|.+.|+++.+++.+ .+.+++|.||.|++||--+.+++..+. .|+ ..|.+..|+.+|+++++.|. |..++
T Consensus 257 d~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVK 330 (430)
T ss_pred ccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceee
Confidence 3589999999998765 899999999999999998888887653 344 48999999999999999875 88999
Q ss_pred EEECCCCeEEEEeecccC----CceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 571 EWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~----~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
+|.+.+++.+..+.|... .--+...|+....+++.-. ..+.+.-||.++...+..+.. ++.+.+..+.-+|.+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCC
Confidence 999999999999987521 0123355777777777744 457899999999887776654 3455899999999999
Q ss_pred EEEEEECCCcEEEEEc
Q 001159 646 LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~ 661 (1135)
.+++++.|..+|+|--
T Consensus 410 ~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeecccceeeeeee
Confidence 9999999999999963
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=216.87 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=238.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|...|.+|+|+-+|. -||+|+.|+++.+|+++....... ....+|.+.|-.++|+| ...++
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcce
Confidence 677999999999998 589999999999999998754332 12678999999999998 56799
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++++.|.+|++||+..+++.... . ..+.=.-+.|+|+|. +++.++.|..|.+.|.++.+.+...+ ....+.-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877632 2 233345689999999 89999999999999999888776654 45567888
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+|+.++ ++++.....|+|.|..+...+.+..+..|.....|+.|+|+|+++++|+. |..+.+||+..--+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 888443 78888888899999999999999999999999999999999999999986 888999999999899999
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
..+.- +|+.+.|+-||++|++|++|..|-|=++.+|..+..++..+ +...++|+|...+||.+.+|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 89999999999999999999999999999999999998654 46899999999999988775
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=252.79 Aligned_cols=279 Identities=16% Similarity=0.240 Sum_probs=240.0
Q ss_pred eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC
Q 001159 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 428 (1135)
.+-++||..+ .||+|. ...|++|+..++....- ..-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3457788655 567664 45899999998874321 2224788999999999999999999
Q ss_pred CCeEEEEEeCCCCceeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCCCCCeeEEEee
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~ 506 (1135)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 6667 99999999998 33 789999999999999998776655 88999999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC-CCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+++ .++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|+.|++||..+|..+.....
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 865 89999999999999999888999999999999999999995 456777764 5699999999999999988876
Q ss_pred ccCCceeEEEecCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 586 FRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.. .|.++.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 55 6999999999887777 45778999999999999999998865 799999999999999999999999999865
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=223.92 Aligned_cols=274 Identities=18% Similarity=0.256 Sum_probs=222.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc-cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.++.|.+++|||....++++|+-||+|++|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999874 3221 1245699999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-.|+|||.|++|+.||.+...++.++. -...++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998433 56789999999999887655589999999999999999999988886 45667777
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC--eE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1135)
..-. .+++.+..++.|.+|+++....... ... -.-.+.|++...|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 5422 5889999999999999976554332 111 2336889998888887787775 777888777765 55
Q ss_pred EEEeecccC--------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE
Q 001159 580 KRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~~--------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 651 (1135)
-.+|+.|.. ..|++++|+|....|+++|.||++.+||-+....+.+...+.. +|+++.|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 667777763 1477899999999999999999999999998887777766644 899999999999988664
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=240.87 Aligned_cols=284 Identities=17% Similarity=0.253 Sum_probs=231.9
Q ss_pred ccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 772 ASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
.+.| .+++|+|...+=++.++.-.+.+|+.... ........ . ...+.++.|-.
T Consensus 26 ~~~v-ssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 26 HNSV-SSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred cCcc-eeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhhHHh---h-ccceeEEEeec
Confidence 3556 99999997665555555667777754321 11111111 2 77899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEE
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
||+++|.|+ .|.|+|||+.+...++.+.+|..+|..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877889999999999999999999999999999999999999999877789999999999
Q ss_pred EEEcCC-CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCcee
Q 001159 931 LAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECS 1008 (1135)
Q Consensus 931 l~~s~d-~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~ 1008 (1135)
.+|+|- +.+++|||-||+|++||+.+.. ........| .+|-.+.|-|.|..+|+++...|+|||+ ++...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999996 5589999999999999998863 112222222 5789999999999999999999999999 46555
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..... .|...|+|+++..++..|++|+-|+.|+|||+.+.+.+..+... ...++++-+| |+..++.
T Consensus 231 l~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-----------~pvLsiavs~-dd~t~vi 296 (487)
T KOG0310|consen 231 LTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-----------GPVLSIAVSP-DDQTVVI 296 (487)
T ss_pred hhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-----------cceeeEEecC-CCceEEE
Confidence 44332 26899999999999999999999999999999999999887754 3456777788 6689999
Q ss_pred EecCCcEEEEecCCCc
Q 001159 1089 GMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1089 g~~dg~v~~W~~~~~~ 1104 (1135)
|..||.+.+=+....+
T Consensus 297 GmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 297 GMSNGLVSIRRREVKK 312 (487)
T ss_pred ecccceeeeehhhccc
Confidence 9999998777554433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=217.39 Aligned_cols=277 Identities=14% Similarity=0.224 Sum_probs=234.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee--eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
.+++|.+.|.+++|+.+|. .+++|+.|+++.+|++...+... ...+|.+.|-.++|+|... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 89999999999999998776554 3468999999999998765 79999999999999
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 605 (1135)
||++..++..........+ .+.|+|+|.+++++.. +..|...|.++.+.+...+... .+.-++|+.++.+++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k----dD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNK----DDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecC----cccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988776655555 4789999999999864 6779999999888877665443 4677889888888888
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCC
Q 001159 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
....|.|.|......+++..++.|.. ...|+.|+|+|+++|+|+.|-.+.+||++.. -+.+.+.
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is------------- 228 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS------------- 228 (313)
T ss_pred ecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHh-hhheeec-------------
Confidence 77889999999999999999998864 6789999999999999999999999998533 1111000
Q ss_pred CCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEee
Q 001159 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 766 LPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
.+ ..+|+
T Consensus 229 ------------------------------------------------------------------------Rl-dwpVR 235 (313)
T KOG1407|consen 229 ------------------------------------------------------------------------RL-DWPVR 235 (313)
T ss_pred ------------------------------------------------------------------------cc-cCceE
Confidence 03 77899
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001159 846 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg 905 (1135)
.+.||.||++||+|+ |-.|-|=++++|..+..++ +.++-..++|+| ...+||.++.|.
T Consensus 236 TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk 294 (313)
T KOG1407|consen 236 TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDK 294 (313)
T ss_pred EEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCC
Confidence 999999999999999 8889999999999999887 788899999999 889999988763
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=223.46 Aligned_cols=270 Identities=11% Similarity=0.211 Sum_probs=217.9
Q ss_pred ecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccch
Q 001159 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
....|+....-..+...-.....+.-.+.+..|+||++....+++++.||+++|||+.....
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------ 95 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------ 95 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------
Confidence 33444433333334444566777778899999999999888899999999999999543221
Q ss_pred hhhhccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 400 QNALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
|...++.|...|.++.|++ +++.+++++.|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|++
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 2334788999999999999 56677888999999999999887666 78999999999999997766 8999999999
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCC-EE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l 556 (1135)
+++||++..-....+..|...|.++.|+..++ .+++||+.|+.|++||++..+. +..+.+|+-.|..++|||... .|
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 99999986544445889999999999986644 8999999999999999998664 557888999999999999764 56
Q ss_pred EEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEEC
Q 001159 557 FSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~ 617 (1135)
++++. |.++++||...+. .+.+...|.. -+..+.|++ ++.++++++.|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 67765 8899999998554 4445554544 788899987 4578999999999999985
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=219.40 Aligned_cols=249 Identities=16% Similarity=0.221 Sum_probs=209.8
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~ 917 (1135)
...|.++.|+++|.++++++ |.+|+|||..+++.++++..+...|..+.|.. ....+..++. |.+||..++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCce
Confidence 67899999999999999988 78999999999999999998888899999987 4555555665 88999999999999
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec-C
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-S 996 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-~ 996 (1135)
++-|.||...|++|+.+|-+..++|++.|++|++||+...+++....+ ..-..+||.|.|-++|++.+ +
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----------CCCcceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999997765432221 12357899999999999644 4
Q ss_pred eEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCcc
Q 001159 997 QISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1073 (1135)
Q Consensus 997 ~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
.|++||+ .......+....+-..+.+.+.|||||++|+.++..+.+++.|.-+|.....+..+. .....+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~~ 235 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNLP 235 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCcc
Confidence 9999999 334444444444447789999999999999999999999999999999988887553 122345
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~ 1108 (1135)
+.++|+| |++++++|+.||+|.+|++.++.....
T Consensus 236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 7899999 889999999999999999999884443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=219.82 Aligned_cols=240 Identities=21% Similarity=0.289 Sum_probs=201.1
Q ss_pred CCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEccc
Q 001159 838 KPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 838 ~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~~ 914 (1135)
.| .+.++++|. ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|.+|++||.|.+|+...
T Consensus 41 aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 41 AH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 48 999999999 789999999 99999999999999999999999999999998 543 889999999999999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 994 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 994 (1135)
.+++..+++|.+.|+.|+.+|.+++.++.+.|+.++.||+-.++.-....+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999887433222221 235699999999999998
Q ss_pred cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCcc
Q 001159 995 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1073 (1135)
Q Consensus 995 d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
.+.|-+|.+ +......... +..+.++.|- ++..|++|..|+.|.+||.+++.+++.+..|. ..+..
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--------~RVK~ 254 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--------NRVKD 254 (362)
T ss_pred ccEEEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--------hheee
Confidence 999999999 4333333322 3457777764 56678999999999999999998888888663 33554
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+...-.| ++.+|+|++.||.|++||+....
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEccccc
Confidence 5444445 67899999999999999998763
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=247.74 Aligned_cols=288 Identities=19% Similarity=0.262 Sum_probs=235.9
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
++..+..+.++|++|+.||.|++|++..-..... .+ -...+..|.++|+.++...+|+.|+++|.|.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 5555555545899999999999999875432111 00 0122567999999999999999999999999
Q ss_pred eEEEEEeCCCCceeeeeEeecccCCEEEEEE-ecCCCeEEEEEEcCCCcEEEEEcCCCe--eeee--------ec-CCCC
Q 001159 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYT--------FE-GHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~--------~~-~h~~ 498 (1135)
+|++|+...+. ..+..++..|...|.|+++ .++.. ++||||-|+.|.+||+.++. .+.+ +. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 1233377889999999999 66666 89999999999999999873 2322 33 7888
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|++++.++.+ ..+++|+..+.+++||.++.+.+..+.+|...|.++..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 99999997755 89999999999999999999999999999999999999999999999986 9999999999999
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 658 (1135)
++.++..|.. .|.++..+|+-..+++|+.||.|+.=|+.+......+-... .+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCceeeecccccee
Confidence 9999999998 69999999999999999999999999999853333332222 26777777765555577888999999
Q ss_pred EEcCC
Q 001159 659 LANSD 663 (1135)
Q Consensus 659 wd~~~ 663 (1135)
|...-
T Consensus 324 W~~~~ 328 (735)
T KOG0308|consen 324 WKLEP 328 (735)
T ss_pred cCCcc
Confidence 97643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=223.65 Aligned_cols=253 Identities=15% Similarity=0.272 Sum_probs=207.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCC------------CCc---eeeeeEeecccCCEEEEEEecCCCeE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TGE---LRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~------------~~~---~~~~~~l~~h~~~v~~v~~s~d~~~~ 468 (1135)
+..|++++.+.+|||||.++|+|+.|..|+|.|++. +.. --.+.++-.|...|+++.|.|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-- 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-- 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--
Confidence 567999999999999999999999999999999871 111 012346778999999999999998
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe---cCCCCc
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~ 543 (1135)
.|++|+.|++|++||.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++-..- ..|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 99999999999999987644333222 245689999999977 89999999999999999998876643 446779
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec-ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++++
T Consensus 264 i~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999974 88999999999999988864 5555799999999999999999999999999999999
Q ss_pred EEEEeCCCCC---CCcceEEEcCCCCEEEEEEC-CCcEEEEEcCCC
Q 001159 623 LTTVDADGGL---PASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~ 664 (1135)
+..+.+.+.. ..-+...|+....+++.-.. .+.+.-||.++.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998765322 12245567766666665543 567888888776
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=246.77 Aligned_cols=261 Identities=17% Similarity=0.288 Sum_probs=226.2
Q ss_pred cccCCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccC-
Q 001159 329 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND- 406 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 406 (1135)
+|.|+...+....... +.+.|+++.|+++|. +||+|..+|.|.|||....+.+.. +.+
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 4556666666555544 489999999999998 799999999999999988776654 445
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++|+|+.|+.+.|||...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999998 78899999999999999998765543 3789999999999999999 899999999999999988
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEE--cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
...+..+..|.+.|.+++|+|-.. ..||+|+ .|++|++||..++..+.... .+..|.++.|++..+-|+++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 888999999999999999999876 5888874 79999999999766655443 5678999999999988886643 3
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
.+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999999999999999998 7999999999999999999999999998764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=231.81 Aligned_cols=294 Identities=14% Similarity=0.224 Sum_probs=235.0
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecc----cccccchhhhhccCCCcceEEEEEcCC
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.|.-+|+||+++||++ +.++++.+|+|.=|++.+|+.... +|.- .....+..... .+|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4899999999999998 688999999999999999985521 1111 00111222222 489999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
|+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999987766 6889999999999987666 6899999999999999999999999999999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|.++...... ..+..|+.|+++++|++ ..+....+.++.+.+-|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 9999765443 55556669999999999 45566678888889999999654 57778874 89999999999998
Q ss_pred EEEeecccC-----------CceeEEEecCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCcceEEEcCCC
Q 001159 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 580 ~~~~~~~~~-----------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
+.+....++ ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. .+.|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653321 16888999999999999999999999999876 44555543 3469999999999
Q ss_pred CEEEEE-ECCCcEEEE
Q 001159 645 SLLAVT-TSDNGIKIL 659 (1135)
Q Consensus 645 ~~l~~~-~~dg~i~iw 659 (1135)
+.+++| +....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 966665 333333333
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=237.41 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=211.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|..++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998876 233447778889999999999999 788999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+...+..++|.+|.+.|+++.|.-.. ..+++|+.|.+|++||+....+....- ....+..+..+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999987665 459999999999999999876665433 23334444444 445566654
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCcceEEEc
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~ 641 (1135)
|+.|+.||.+++........+. .|+++..++++..+.+++.|.++.+.|+++.+....+..... ...++.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 7789999999999999888766 799999999999999999999999999999998888865421 2357899999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001159 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999888
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=246.79 Aligned_cols=242 Identities=19% Similarity=0.234 Sum_probs=209.0
Q ss_pred EEEEc-CCCCeEEEEeCCCeEEEEEeCCCCce---eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-
Q 001159 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1135)
Q Consensus 413 ~v~~s-pd~~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 487 (1135)
.+..+ |.+++|.+||.||.|++|++...... .....++.|...|.+++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 46778999999999999998764331 12346788999999999999998 7999999999999999877
Q ss_pred -eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--ee--------Eec-CCCCcEEEEEEcCCCCE
Q 001159 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~~~~~ 555 (1135)
-++.++..|.+.|.|+++-. .+...+++|+.|+.|.+||+.++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 67888999999999999832 2337999999999999999997633 11 122 56678999999999988
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++|+. ++.|++||.++++.+..+.||.+ .|.++..++||..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888876 77799999999999999999998 899999999999999999999999999999999999988866 69
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++..+|+-..+.+|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888775
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=252.90 Aligned_cols=272 Identities=17% Similarity=0.233 Sum_probs=209.6
Q ss_pred ccccceEEEEEEecCCcceeEecccceeeeEEeccccC------C-----------------------CCCccccc----
Q 001159 770 IAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N-----------------------PSGKATAN---- 816 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~------~-----------------------~~~~~~~~---- 816 (1135)
.|.+.| .++.|++||++|++++.|+.|+||.+...+. . ..++....
T Consensus 265 ah~gaI-w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAI-WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcE-EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 588999 9999999999999999999999999876110 0 00000000
Q ss_pred --ccCeeecCCCC---cceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 817 --VAPQLWQPPSG---TLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 817 --~~~~~~~~~~~---~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
..+ +....-. ......+.| | ...|..+.||.++- |++++ |.+|++|++...+|++.|. |.+-|||++|
T Consensus 344 ~s~~~-~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 344 QSPCV-LLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred CCccc-cCCCccccccccchhhhhc--c-chhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 000 0000000 011112444 8 99999999998765 55555 9999999999999999998 9999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCC
Q 001159 891 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 970 (1135)
Q Consensus 891 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 970 (1135)
+|-|.+++++|+-||.||||++...+.+.-...+ +-|++++|+|||+..+.|+-+|.+++|+....+......+....+
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 9999999999999999999999988766544444 789999999999999999999999999999888766666655554
Q ss_pred CCCCCCCceEEEECCCCc--EEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 001159 971 RQSPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 971 ~~~~~~~v~~~~~s~dg~--~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~ 1047 (1135)
.......|+.+.|.|... .|+++.|..|+|||. +...+..+..... ...-....|+.||++|+++++|..|+||+.
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 443334699999987654 888899999999999 5666666554432 334467889999999999999999999998
Q ss_pred CCc
Q 001159 1048 ETL 1050 (1135)
Q Consensus 1048 ~~~ 1050 (1135)
+..
T Consensus 576 ~~~ 578 (712)
T KOG0283|consen 576 DSF 578 (712)
T ss_pred CCC
Confidence 543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=251.02 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=198.1
Q ss_pred EeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCCCc-
Q 001159 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1135)
Q Consensus 365 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~- 442 (1135)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 5567788888876543332 26789999999999996 78999999999999999986432
Q ss_pred e----eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE
Q 001159 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 443 ~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s 518 (1135)
. .....+.+|...|.+++|+|++.. +|++++.|++|+|||+++++.+..+. |...|.+++|+|++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122357789999999999999874 56899999999999999998887776 66789999998865 8999999
Q ss_pred cCCeEEEEeCcCCCceeEecCCCCcEE-----EEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCC-ce
Q 001159 519 IDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1135)
Q Consensus 519 ~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (1135)
.|+.|++||++++.....+.+|.+.+. ...|++++.+|++++.++..+++|++||+++ ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999988888888876543 2345689999999887554457899999995 5666655443321 22
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
......+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 333334568888999999999999998764 3444433344577889999964
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=258.01 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=230.7
Q ss_pred cceEEEEEEecCCcceeEec--ccceeeeEEeccccCCCCCcccccccCeeecCC-CCcceeccCCCCCCCCCceEEEEe
Q 001159 773 SKVVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPP-SGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
..| .++..+|||..+++|+ .||.+++|+...--. ....++.. .+.+. .-..| .+.|.|+.|
T Consensus 14 ~~I-fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~----~m~~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 14 KSI-FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC----TMDDH-DGSVNCVRF 77 (942)
T ss_pred eeE-EEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe----eeccc-cCceeEEEE
Confidence 335 8999999999999999 799999997642110 00111211 11111 11237 999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCC------------------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 910 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iw 910 (1135)
+|||++||+|+ |+.|.||+... ++++..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 67899998762 246788999999999999999 89999999999999999
Q ss_pred EcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEE
Q 001159 911 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 990 (1135)
Q Consensus 911 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 990 (1135)
+..+.+.+.++.+|.+.|-++.|.|-|+++||-+.|++|+||++.+....+ .+..+..+.........+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999987765332 233333333333456889999999999
Q ss_pred EEE--e---cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeC-----CC------------EEEEEeCCCeEEEEEC
Q 001159 991 LVV--H---ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCD-----GL------------LVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 991 ~~~--~---d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d-----~~------------~l~~~~~dg~I~vwd~ 1047 (1135)
++. - ...+.|.+- +.+.-..+ -+|.+++.+++|+|. .+ .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~L---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDL---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeee---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 2 245666665 22222222 356889999999871 11 6889999999999999
Q ss_pred CCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1048 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
...+++..+. ..+ . -..+-++|+| ||..|+.++.||+|.+..+...+
T Consensus 312 ~~~RPl~vi~--~lf-----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIH--NLF-----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhh--hhh-----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 8877775443 111 1 3456788999 88999999999999999987655
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=225.69 Aligned_cols=282 Identities=15% Similarity=0.217 Sum_probs=245.0
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..++++...|... .+.+|+.|..+.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3788999999854 688999999999999998887764 89999999999999999999999
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC--CCCCeeEEE
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~ 504 (1135)
+.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766443 5678999999999999999 899999999999999999998876653 234589999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|||++ ..+.+|..||.+++||+.+......+.+|.++|..++|+.+|-+|+++.. |+.|++||++.-+..+++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 99965 89999999999999999999999999999999999999999999999974 7779999999999888888
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
......+.+++|++.|.+++.++.|=+|++++-.+.. ++..+..+ .+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 7776679999999999999999888777777755443 34444433 346789999999999999999999888754
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=251.28 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=204.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce----------eeeeEeecccCCEEEEEEec-CCCeEEEEEEcC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~ 475 (1135)
+-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4455677777888888888888887778876554322 11224779999999999999 777 8999999
Q ss_pred CCcEEEEEcCCC-------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 476 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
|++|++||+.++ ..+..+.+|...|.+++|+|..+ .+|++++.|++|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999999743 6899999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCc-eE
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1135)
|+|+|.+|++++. |+.|++||+++++.+..+.+|....+..+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999975 889999999999999999988764556678899888888754 47899999998754 44
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 664 (1135)
.....+. ...+....|++++.+|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 4443332 22455677899999999887 4999999999887
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=233.75 Aligned_cols=301 Identities=17% Similarity=0.225 Sum_probs=234.8
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
|+.+-..++ |+..|.++++.|.|-+ +++|+.|-.|++||+........ .|+ .+.......|+++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCccccccccee
Confidence 455555666 6788999999999985 88999999999999986543221 122 1233456679999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCce---------eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGEL---------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~---------~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.||+.|..|++.+....++|+|-+..... .....-.||...++|.+|.|+.+. .++|++.||+++|||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 99999999999999999999997654322 222334689999999999999888 79999999999999998
Q ss_pred CCee-eeeec-----CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce---eEecCCCC--cEEEEEEcCCCC
Q 001159 486 AGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGN--WCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~s~~~~ 554 (1135)
..+. +..++ +..-++++++|++++ ..|++|+.||.|.+|+....... ..-.+|.. .|+|++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 6542 22232 344578899998755 88999999999999997554332 23455655 899999999999
Q ss_pred EEEEEecCCCCCCeEEEEECCCCe-EEEEeecccC-CceeEEEecCCCCEEEEEe------CCCeEEEEECCCCceEEEE
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|++-+. |.++++||++..+ ++.+..+... ..-+.++|||+.+.|++|+ ..|++.+||..+.+.++.+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9999875 8899999998643 4555444322 1346689999999999976 4578999999999999999
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.... ..|..+.|+|.-+.|.+|+.||++++|-
T Consensus 454 ~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 454 DIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCC--ceEEEEeecchhhheeeecCCCceEEEE
Confidence 8763 3788999999999999999999999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=251.77 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=210.1
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56778888887 67899999999999999999876552 3889999999999987455 899999999999999999
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
|.+.+.+.+|...|.++...+ ..+++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998644 678899999999999999999999999999999999988 789999986 7
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
+.|.+||+.++++++++.+|.. .|.++.+... +++++|+.|++|++||+.+. +++.++.+|.. .|..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7999999999999999999888 8999988765 89999999999999999999 89999988755 344443 4577
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001159 646 LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|++++.|++|++||..++
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred eeEeccccccEEEeecccC
Confidence 9999999999999998877
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-26 Score=218.46 Aligned_cols=297 Identities=16% Similarity=0.204 Sum_probs=245.2
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
...+.+.+. |.+.|+.++-....+ ++.+++.|.+.+||.+++|.++.+ +.||.+.|+++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsi 196 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSI 196 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeE
Confidence 345566666 999999999988887 899999999999999999999876 78999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEe------CC------------------------------C-CceeeeeEeecccCCEE
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTY------NP------------------------------T-GELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~------~~------------------------------~-~~~~~~~~l~~h~~~v~ 457 (1135)
+|++.+.++++++.|++..||.. .. + ..-.+...+.+|.+.|.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 99999999999999999999962 11 0 00113456889999999
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC-ceeE
Q 001159 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVD 536 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~ 536 (1135)
+..|...|+ .+++++.|.+..+||+++|..+..+.||....+-++-+|.. .++++.+.|.+.++||++..- .+..
T Consensus 277 a~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 277 ACDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred ehhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeee
Confidence 999999999 68999999999999999999999999999999999998876 899999999999999998433 3457
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 537 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
+.+|...|+++.|..+. .+++++. |.+|++||+++.. ++.++.... +++.++.+..+..|+.--.+..|++|
T Consensus 353 FQGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ecccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEE
Confidence 89999999999998765 5666653 8899999998754 556666543 68889998877788888888999999
Q ss_pred ECCCCceEEEEe---CCCCCCCcceEEEcCCC--CEEEEEECCCcEEEEEcCCC
Q 001159 616 DMDNMNMLTTVD---ADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 616 d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++... +..+. -.++...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 426 DlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCc-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 998544 33332 22345579999998654 35788999999999998754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=217.74 Aligned_cols=331 Identities=12% Similarity=0.211 Sum_probs=250.7
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
++++.+.||.+ .|..++.......+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 45677888888 788888877777888899999999999999999999998865 899999999999999999999999
Q ss_pred EEEcCCCchhhhhc--cccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccc
Q 001159 658 ILANSDGVRLLRML--EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 658 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
||...-.-+..+.. .+|...
T Consensus 216 IW~~av~~~vP~~~a~~~hSsE---------------------------------------------------------- 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSE---------------------------------------------------------- 237 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCch----------------------------------------------------------
Confidence 99743221100000 000000
Q ss_pred cccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccc
Q 001159 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 815 (1135)
... -.+|. |... ..-....||. +|++
T Consensus 238 eE~--e~sDe-------------------------~~~d--~d~~~~sD~~---------tiRv---------------- 263 (481)
T KOG0300|consen 238 EEE--EHSDE-------------------------HNRD--TDSSEKSDGH---------TIRV---------------- 263 (481)
T ss_pred hhh--hcccc-------------------------cccc--cccccccCCc---------eeee----------------
Confidence 000 00000 0000 0000011111 2221
Q ss_pred cccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCC
Q 001159 816 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||+++++.+..+.||..+.+.++-+| .
T Consensus 264 --------------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-t 325 (481)
T KOG0300|consen 264 --------------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-T 325 (481)
T ss_pred --------------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-c
Confidence 1111333 7 89999999999999999999 99999999999999999999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC
Q 001159 895 NNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 973 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 973 (1135)
.+++++.+.|.+.++||.... ..+..|+||.+.|+++.|.-|. .+++++.|.+|++||+.+-... +....
T Consensus 326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----lATIR---- 396 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----LATIR---- 396 (481)
T ss_pred ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----ceeee----
Confidence 999999999999999998843 4567899999999999998665 6889999999999999874421 21111
Q ss_pred CCCCceEEEECCCCcEEEEE-ecCeEEEEecCCceeeccC--CCCCCCCCEEEEEEeeCCC--EEEEEeCCCeEEEEECC
Q 001159 974 PLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 974 ~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~--~~~~h~~~i~~~~~s~d~~--~l~~~~~dg~I~vwd~~ 1048 (1135)
...++..++.+-.+..++.- .++.|++||+++..+..++ ...+|..-|+|++|+.+.- -|++++-|..+.=|.+.
T Consensus 397 tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 397 TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 11567899999999999994 6688999999988887776 5578899999999986643 48888999999999987
Q ss_pred Cc
Q 001159 1049 TL 1050 (1135)
Q Consensus 1049 ~~ 1050 (1135)
+.
T Consensus 477 ~p 478 (481)
T KOG0300|consen 477 TP 478 (481)
T ss_pred cc
Confidence 53
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=213.24 Aligned_cols=278 Identities=17% Similarity=0.213 Sum_probs=221.3
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+++|++...|.=+++.-...-..... .| .-.+.-.+..|.++|+++|. ++.++|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~-~~------~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSV-KP------TLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccccccc-ce------eeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 45677777776666643221000000 00 01122336789999999999 68999999999999999999987
Q ss_pred ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC
Q 001159 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1135)
Q Consensus 442 ~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg 521 (1135)
++. .+-.|.+.|+++.|.++-....|++|++||.|.+|+...-.++.++++|.+.|+.+++||++ ++.++.+.|+
T Consensus 75 qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~ 149 (362)
T KOG0294|consen 75 QLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQ 149 (362)
T ss_pred hhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCc
Confidence 665 66789999999999987643368999999999999999999999999999999999999987 8999999999
Q ss_pred eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC
Q 001159 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 522 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
.++.||+-.++.-..+..... .+.+.|+|.|.+++.++ ...|-+|.+.+.+....+.... .+.++.|. ++.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-----~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~ 220 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-----RNKIDIYQLDNASVFREIENPK--RILCATFL-DGS 220 (362)
T ss_pred eeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe-----ccEEEEEecccHhHhhhhhccc--cceeeeec-CCc
Confidence 999999998877665554333 23489999999888876 5569999998877766655442 46666665 567
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE--cCCCCEEEEEECCCcEEEEEcCCC
Q 001159 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+++|++|+.|.+||.++..+...+..|.. .|.++.+ .|++.+|++++.||.|+|||+...
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 899999999999999999999999988755 7888874 467899999999999999999765
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=236.73 Aligned_cols=283 Identities=15% Similarity=0.291 Sum_probs=240.2
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE-E
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v 414 (1135)
+++.+.+. |...|..+++.+.. .+++++.||++++|+-..++.+.+ +.+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 45666777 99999999988887 477899999999999876655432 225678888888 8
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
++-+ ++-.|++|+.|+.|.+|.......+. .|.+|...|.+++...++. ++|||.|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55569999999999999999887655 8899999999999877774 89999999999997 46677789
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|+..|++++..|. +.++|||.|++|++|. .++...++.+|...|..+++-+++.+ ++|+ +||.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-Eeec----CCceEEEEe
Confidence 999999999998876 4899999999999994 46788899999999999999887654 4554 499999999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+ +|..+..+.+|.. -+.+++...++..++++++|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|++|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 8 7999999999998 89999988888999999999999999987 77888876644 689999988886 6678899
Q ss_pred CcEEEEEcCC
Q 001159 654 NGIKILANSD 663 (1135)
Q Consensus 654 g~i~iwd~~~ 663 (1135)
|.||||....
T Consensus 280 G~VrVfT~~k 289 (745)
T KOG0301|consen 280 GRVRVFTVDK 289 (745)
T ss_pred ceEEEEEecc
Confidence 9999998763
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-24 Score=195.36 Aligned_cols=307 Identities=13% Similarity=0.088 Sum_probs=224.7
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
....| .+++|+|.|...++++...++++...+.-.....+...+. .......+...|..+.|.|.+||
T Consensus 31 dsqai-rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~-----------~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 31 DSQAI-RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK-----------QPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred chhhe-eeEEecCCCceEEeccCCceEEEEccccccCccccccccc-----------CCCeEEeeeccccCccEEEEEec
Confidence 44556 9999999999999999999999875432111000000000 00000111122339999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccE-----EEEEeCCCCCeEEEEEecC---CCcEEEEEeC-CCcEEEEEcccceeeEE
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGME-DSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~sp~---~~~~lasg~~-dg~v~iwd~~~~~~~~~ 920 (1135)
|+|+++|+|+ |.+|++.......+ -..|.-|.+.|..++|-.+ ++.+|++++. |..|++-|..+|+..+.
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999 88999876654322 2346779999999999642 4678888764 77899999999999999
Q ss_pred ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEE
Q 001159 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 999 (1135)
Q Consensus 921 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~ 999 (1135)
+.+|.+.|.++- +-+|-++++++.|.+|++||+.-..++...-.....+. .....|..++..|.|++|+++ .|....
T Consensus 179 ~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-lessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 179 LSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-LESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred ecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC-cccceeEEEEECCCcceeeeccCCCceE
Confidence 999999998873 44688999999999999999987664432211111111 011578999999999999997 688899
Q ss_pred EEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEe
Q 001159 1000 VYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAP 1078 (1135)
Q Consensus 1000 vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
+||+ .++.+..+. .|...|.++.|||...||++++.|..|++-|+. |.+..++...- ...+...++.+.|
T Consensus 257 lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~v-----v~ehkdk~i~~rw 327 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMV-----VAEHKDKAIQCRW 327 (350)
T ss_pred EEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEE-----EEeccCceEEEEe
Confidence 9999 566666654 458999999999999999999999999999998 44443333111 1133467788999
Q ss_pred cCCCCCEEEEEecCCcEEEEecC
Q 001159 1079 HPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1079 ~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
+|.+ --+++.+.|.++.+|-++
T Consensus 328 h~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred cCcc-ceeeeccCcceEEEeccC
Confidence 9965 677888999999999764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=225.68 Aligned_cols=252 Identities=19% Similarity=0.250 Sum_probs=214.5
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeee--------------eEe-ecccCCEEEEEEecCCCeE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~v~~v~~s~d~~~~ 468 (1135)
...|.-+|.+++++||+++.++++.+++|.=|++.+++..+.. ..- .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4569999999999999999999999999999999887643110 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|--.. ..+++++.|++|++|+++....+.++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999997554 6899999999999999999888889999999999998
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...-++.+-+++. |+++++|++.. ...-.|.++.+ .+.|++|-. ...+++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888777777765 88999999953 33345667665 889999875 46899999999999999999998877643
Q ss_pred CCCC----------CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCch
Q 001159 629 DGGL----------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 629 ~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 666 (1135)
..+. ..|++++..|...++++|+.+|.|++|-+.++..
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 2111 1578999999999999999999999999988843
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=210.87 Aligned_cols=253 Identities=19% Similarity=0.238 Sum_probs=187.2
Q ss_pred EEEEEecCCcceeEec-ccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
+.++|+||-+.+++.. ....+++|.+..... |..... ..-||-. .....| .-.+..+-...++++
T Consensus 136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~--------~f~~kh-~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL--------EFERKH-QVDIINIGIAGNAKY 201 (420)
T ss_pred eEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc--------ccchhc-ccceEEEeecCCceE
Confidence 8899999988776554 467899997754322 221111 1112210 001125 667777888889999
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---c-----eeeEEecCcCC
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---D-----EVKTKLKGHQN 926 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~~ 926 (1135)
|++++ |.+|.+|++. |+.+..+......-+..+.|| +|++||+++-.-.|++|.+-- | ..+..|+||..
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 99999 8899999998 899999887777788899999 999999999999999998652 2 23456889999
Q ss_pred CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceec--eeeeecC--CCCCCCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 927 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~--~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
.|..++||++...++|+|.||+++|||++-.-... ...+... .-+. .......++++|.|+.||++....+++|.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999986321111 1111111 1111 11344589999999999999999999999
Q ss_pred c-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1003 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1003 ~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
. +++....+. +.|+..|++++|++||++++++ .|..++++.-..
T Consensus 359 se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atc-Gdr~vrv~~ntp 403 (420)
T KOG2096|consen 359 SEDGKDYPELE--DIHSTTISSISYSSDGKYIATC-GDRYVRVIRNTP 403 (420)
T ss_pred cccCccchhHH--HhhcCceeeEEecCCCcEEeee-cceeeeeecCCC
Confidence 9 666555443 4579999999999999999987 578888876433
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-25 Score=211.01 Aligned_cols=248 Identities=16% Similarity=0.181 Sum_probs=196.3
Q ss_pred CCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 406 DAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
...+.|.+++||| ...+++.++.||+|++|+++....... .....|.++|.+++|+.||. .+++|+-|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 4677899999999 555677889999999999987433322 35567999999999999998 8999999999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
.+++ +..+..|.++|.++.|.+...-..|+|||.|++|+.||++....+..+..++ .++++..- ...++++..
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata--- 174 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATA--- 174 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEec---
Confidence 9994 5677789999999999887766789999999999999999888887776654 34444332 234555543
Q ss_pred CCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCC-------CCC
Q 001159 565 GESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LPA 634 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~~ 634 (1135)
++.|.+|+++.+.. .+.....-.-.++|+++..|....+.|+-+|.+.|..++.+ +.-.+++.|.. .-.
T Consensus 175 -~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 175 -ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred -CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 77899999976543 23333333446899999999988899999999999999886 33345555542 225
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++++|+|....|++++.||++.+||-+..
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh
Confidence 788999999899999999999999997655
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=226.89 Aligned_cols=287 Identities=13% Similarity=0.185 Sum_probs=233.1
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
+..|. |.+.|.|++=+|..-..+|+|+.||.|+|||+....+..+ +..|.+.|..+++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc
Confidence 44445 8999999999999855799999999999999998877664 778999999999987
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
..+++++.|.+|+.|.++.. ..+ ++. ....+..+.-+..+. .++|||.+ |.|||.....++..+.-...
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred --cceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCce--eeecccccCCccceeecCCC
Confidence 77889999999999998873 222 333 244566677666666 78999864 89999998889999988888
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 577 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 577 (1135)
.|.++.|+|... ..|++|+.|+.|.+||++...++..... .-..+.++|+|.+-.++++. +|..++.+|++.-
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLS 262 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhc
Confidence 999999999865 7888999999999999999887664332 22456789999666666664 4888999999864
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.++..+.+|-. .|..++|+|.|+.+++||.|.+|+||.++.+.....+-. .....|.|+.|+.|.+++++|++|+.|+
T Consensus 263 ~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCccee
Confidence 46777888877 899999999999999999999999999987654433321 1233689999999999999999999999
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
+|.....
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-21 Score=216.85 Aligned_cols=276 Identities=15% Similarity=0.208 Sum_probs=225.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc-cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
|...-+.++|.|+|. ++.+++.||.|++|+...- +.... +.-+...|.+++. ++.+|
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--cccce
Confidence 777899999999999 6788889999999998765 22211 2227777888877 45599
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++|+.+++|.+|.+.++..-. .+....-++.+++|+.+|+ ++|.||+|-.|++-++.+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876543 3444567899999999999 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC--------CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.|+|.+ .+|++.+.||.|++||++++.....+..- ...+..++|+|+|..+++... ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 999866 89999999999999999987766544331 235678899999766666554 8889999999
Q ss_pred CCeEEEEeecccCC-ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 576 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
++.....+...... .+..++|+|+|.||++++.||.|.|||+++.+. |.....|.+++|.|+...+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99988888764432 388999999999999999999999999998322 33445799999999988776666666
Q ss_pred cEEEE
Q 001159 655 GIKIL 659 (1135)
Q Consensus 655 ~i~iw 659 (1135)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 65555
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=207.04 Aligned_cols=269 Identities=19% Similarity=0.267 Sum_probs=216.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
..+.|+.|.|+|.+..|| +++.||++++||+....... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 457899999999998555 56799999999998774432 234899999999987 56789
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.||.|+.+|+.++... .+..|..+|.||.+++... .+++||.|++|++||.+.......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 9999999999999997654 4678999999999998777 79999999999999998765555554 334788886
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC--CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC----e
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----A 578 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 578 (1135)
. .|+.|+.|+.|..+.+||+++......... -.-.+.|+++.|++.-.++++. +|.|.+=.+... +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 337899999999999999998776553222 2337889999998877777765 777776655544 3
Q ss_pred EEEEeecccC--------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 579 IKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 579 ~~~~~~~~~~--------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
....|+.|.. -+|++++|+|-.+.|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4456666653 26899999999999999999999999999999888887654 3369999999999999999
Q ss_pred EC
Q 001159 651 TS 652 (1135)
Q Consensus 651 ~~ 652 (1135)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=218.03 Aligned_cols=239 Identities=17% Similarity=0.259 Sum_probs=215.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..|.++...|....+++|+.|..+.++|..+++.+. .+.||...|+++.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 458888888888899999999999999999987666 7899999999999999998 89999999999999998888
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+......|+.+|+.+..+|++ .||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 888888999999999999976 89999999999999999999887766553 347899999999999998875 8
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 646 (1135)
+.|++||+.++..+..|.+|.+ +|..++|+.+|-+++++++|+.|++||++..+..+++...... .|.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999888 9999999999999999999999999999999999998876654 7999999999999
Q ss_pred EEEEECCCcEEEEE
Q 001159 647 LAVTTSDNGIKILA 660 (1135)
Q Consensus 647 l~~~~~dg~i~iwd 660 (1135)
|+.++.|=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99998776666655
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=238.50 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=183.4
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC-CCeEEEEEEcCCCcEEEEEcCCCe--------eeeeecCC
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h 496 (1135)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56688899999876543 3478899999999999997 56 89999999999999997642 34567899
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
...|.+++|+|... .++++++.|++|++||+++.+....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999999752 456899999999999999888766665 4568999999999999998864 78899999999
Q ss_pred CeEEEEeecccCCc----eeEEEecCCCCEEEEEeCCC----eEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEE
Q 001159 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~i~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l 647 (1135)
++.+..+.+|.+.. +....|+++++++++++.|+ .|++||++. .+++..+..+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999995 6677776655443333334445568899
Q ss_pred EEEECCCcEEEEEcCCC
Q 001159 648 AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~ 664 (1135)
++|+.|++|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=222.83 Aligned_cols=511 Identities=14% Similarity=0.173 Sum_probs=328.5
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCe-EEEEEEcCCCcEEEEEcCCCeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
..-.||+|+++++.+.. ..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||+|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34568999999887755 569999999998877 78899999999999987663 47889999999999999999999
Q ss_pred eeecCCCCCeeEEEeecc------------CCccEEEEEEcC--CeEEEEeCcCCCce-eEecCCCCcEEEEEEcCCCCE
Q 001159 491 YTFEGHEAPVYSVCPHHK------------ESIQFIFSTAID--GKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~------------~~~~~l~s~s~d--g~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
+++..+ .++.++.+.|. .+-..+.+.+.+ ++++-+.+.+.... ..+......-.++.+++.|.+
T Consensus 96 kt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 888643 33333333111 111111111111 11111111111100 001111111456788888887
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEE---EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC--CceEEEEeCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADG 630 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 630 (1135)
...+. +..+.+|+..++... +....++...+++.+++|++++++++..||.|.+|.--. ......-..|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77664 556899998875511 112223333578999999999999999999999996433 22222222334
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCC
Q 001159 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 631 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 710 (1135)
|...|.+++|+++|.+|.+|+..|.+.+|...++.+ ++-..
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k---qfLPR------------------------------------ 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK---QFLPR------------------------------------ 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCc---ccccc------------------------------------
Confidence 455899999999999999999999999999988831 11100
Q ss_pred CCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeE
Q 001159 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLA 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~ 790 (1135)
-...| ..+.++||+....+
T Consensus 291 ------------------------------------------------------------Lgs~I-~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 291 ------------------------------------------------------------LGSPI-LHIVVSPDSDLYSL 309 (792)
T ss_pred ------------------------------------------------------------cCCee-EEEEEcCCCCeEEE
Confidence 12334 88999999999999
Q ss_pred ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEEC
Q 001159 791 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 869 (1135)
Q Consensus 791 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~ 869 (1135)
..+|+.|.+-........ . .+.-..+.+... ..+. .+-.+.++++|.-+.++..+ .|.|.+||+
T Consensus 310 ~~~DNqI~li~~~dl~~k------~--tIsgi~~~~~~~------k~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIK------S--TISGIKPPTPST------KTRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred EecCceEEEEeccchhhh------h--hccCccCCCccc------cccc-cccceeEEEcCCCCceeecCCCceEEEEec
Confidence 999999988765321110 0 010001111100 0012 56677899999555555555 899999999
Q ss_pred CCccEEEEEeC-----CC------CCeEEEEEecCCCcEEEEEe--------CC--CcEEEEEcccce----eeEE-ecC
Q 001159 870 MTFKVMTMFMS-----PP------PAATFLAFHPQDNNIIAIGM--------ED--SSVQIYNVRVDE----VKTK-LKG 923 (1135)
Q Consensus 870 ~~~~~~~~~~~-----h~------~~v~~l~~sp~~~~~lasg~--------~d--g~v~iwd~~~~~----~~~~-l~~ 923 (1135)
.+.+.+..+.. +. -.+++++.+- .|.+++|+- .| -.+++|-..... +... ...
T Consensus 375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P 453 (792)
T KOG1963|consen 375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP 453 (792)
T ss_pred cccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC
Confidence 88776655431 22 2478888888 699999874 23 357889765432 2222 347
Q ss_pred cCCCeEEEEEcCCC--CeEEEEcCCCcEEEEeCCCCceec-----eeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 924 HQNRITGLAFSPTL--NALVSSGADAQLCMWSIDKWEKLK-----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 924 h~~~i~~l~~s~d~--~~l~s~~~D~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
|...+.+.+|.+.. ..++|++.||.++||-+...+.+. ..+.....-|. .+++.++|+.||..|+++.++
T Consensus 454 H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 454 HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCC
Confidence 88887777775532 379999999999999884433221 11222221122 678999999999999999999
Q ss_pred eEEEEec-CCceeeccCCCCCCCCCEEEEEEee----CCCEEEEEeCCCeEEEEECCCceeeee
Q 001159 997 QISVYDS-KLECSRSWSPKDALPAPISSAIYSC----DGLLVYAGFCDGAIGVFDAETLRFRCR 1055 (1135)
Q Consensus 997 ~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~----d~~~l~~~~~dg~I~vwd~~~~~~~~~ 1055 (1135)
.|.+||. +...+....... ..++..+.|.. ++.+. ........+|++-+..+.-.
T Consensus 531 ~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 531 TITIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGALV--HATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred EEEEecCCChhhhhcccccc--ccchHhHhhhccccccccee--eccCceEehHhhhhhheecc
Confidence 9999999 423322222111 33444444432 33332 33567899999998877763
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=206.28 Aligned_cols=221 Identities=13% Similarity=0.148 Sum_probs=156.1
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-----ceeeeeEeecccCCEEEEEEecCCCeEEEEEEc
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~ 474 (1135)
....+++|...|++++||.||++||+++.|+.|++|+++.-. +++....+ +.-+.+.|+||-+. +++++-
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEc
Confidence 334588999999999999999999999999999999997632 12221111 23578999999986 566777
Q ss_pred CCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 475 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
...++++|-+...+. -.+.-|.-++-.+.| . ..|...+..+-...++.
T Consensus 153 ~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f-----------------------~--------~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTD-GSGSHHFVHIDNLEF-----------------------E--------RKHQVDIINIGIAGNAK 200 (420)
T ss_pred cCCEEEEEEeeeccc-CCCCccccccccccc-----------------------c--------hhcccceEEEeecCCce
Confidence 777899987543221 111111111111111 0 11333444555667778
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC---Cc---eEEEEeC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---MN---MLTTVDA 628 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~ 628 (1135)
+|++++. +..|.+|+++ |+.+..+..... .-...+.||+|+++++++..-.|++|.+-- |+ ....+..
T Consensus 201 ~imsas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 201 YIMSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred EEEEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 8888875 6679999988 888887776554 456688999999999999888899998642 21 2233334
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.++...|..++|+++...+++.+.||+++|||++-
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 44456899999999999999999999999999854
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=221.61 Aligned_cols=265 Identities=15% Similarity=0.262 Sum_probs=216.8
Q ss_pred eeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+....+.|.++|+.+.+-|..+.++|+++..+.|.|||+.+-...... .....+...+.||...-++++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 345556699999999999999999999999999999998764332210 00112334588999988899999
Q ss_pred CCCC-eEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC--CCeee
Q 001159 418 PDGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQ 490 (1135)
Q Consensus 418 pd~~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~ 490 (1135)
+... .|++++.|++|++||+..... +.....+.+|...|..++|++-... +|+++++|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9544 789999999999999986543 5566678999999999999997776 79999999999999999 56666
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEE-EEecCCCCCCe
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESH 568 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~~~~ 568 (1135)
+...+|.++|+|++|+|.+ +..|+|||.|++|.+||+++... ...+..|...|.++.|+|....++ +++. |+.
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~r 340 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRR 340 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCc
Confidence 7788999999999999986 48999999999999999998765 568899999999999999876554 5543 889
Q ss_pred EEEEECCCC--------------eEEEEeecccCCceeEEEecCCCCEE-EEEeCCCeEEEEECC
Q 001159 569 LVEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD 618 (1135)
Q Consensus 569 i~~wd~~~~--------------~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~ 618 (1135)
+.+||+..- +++....||.. .|..+.|+|+..++ ++.++|+.+.||...
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999641 23466677777 89999999998765 457899999999876
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=224.76 Aligned_cols=293 Identities=14% Similarity=0.201 Sum_probs=236.7
Q ss_pred eeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+.+.+|.|+.-|.++++|...+ .+.||+ .|.|+|||+....... +...--.......|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 3477888999999999999998 477776 6899999997542210 00000012356779999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1135)
|||+.|++|+.-.++.|||+...... ...++..-.-...+++.+||.+ +.++|..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 99999999999999999999876432 2223444445678899999999 88899999999999999999999999999
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+.+.||.+++ +|..|.+|+.|++||.||++.+....... ....|.++.++|++.+|++|-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999976 45899999999999999999877665433 3457999999999999999975 6667776643 4
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+...+. ...|.++.++.|.++|++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 44455666666 899999999999999999999999999988877665543 34799999999999999999999888
Q ss_pred EEEc
Q 001159 658 ILAN 661 (1135)
Q Consensus 658 iwd~ 661 (1135)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=220.10 Aligned_cols=200 Identities=17% Similarity=0.258 Sum_probs=166.0
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEe
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd 527 (1135)
.|.||...|.|++=.|..-. .++||+.||.|+|||+....+..+|..|.+.|..+++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998733 799999999999999999999999999999999999865 5689999999999998
Q ss_pred CcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCE-EEEE
Q 001159 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAA 606 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~~~ 606 (1135)
++.. ...++ .....+..+.-+..+..+++||. .|.|||.....+++++.-..+ .|.++.|+|.... |+++
T Consensus 136 ~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceee-eccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 22222 23345566666667778888864 599999999999999987777 8999999998754 5556
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.|+.|.+||++.+.++..+.... .-+.++|+|.+-.+++|+.|..+..+|+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhh
Confidence 799999999999999988876543 3578999998888999999999999988654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=203.99 Aligned_cols=252 Identities=20% Similarity=0.293 Sum_probs=210.2
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec--CCCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~i 481 (1135)
-..|.+.|..+...--|++||+|+.|++|+|+.+..+.......+|.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 457999999999888999999999999999999998877667779999999999999987 677 9999999999999
Q ss_pred EEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCC---C
Q 001159 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1135)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~---~ 553 (1135)
|.-.+|+ ..+.+..|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9977774 345667899999999999999999999999999999999887622 3356778889999999986 4
Q ss_pred -----------CEEEEEecCCCCCCeEEEEECCCCe--EEEEeecccCCceeEEEecCCC----CEEEEEeCCCeEEEEE
Q 001159 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~i~~s~~~----~~l~~~~~dg~i~iwd 616 (1135)
+.|++++. |..|++|+...++ .-+++.+|.+ .|+.++|.|.- .+|++++.||+|.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888886 8889999988764 3456888988 89999999964 5799999999999998
Q ss_pred CCCC-ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.+.. +.-..--.+.....+..+.|+..|+.|++++.|+.+.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 111111122233468999999999999999999999999743
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-22 Score=219.94 Aligned_cols=509 Identities=15% Similarity=0.190 Sum_probs=324.8
Q ss_pred EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCc-cEEEEEEcCCeEEEEeCcCCCcee
Q 001159 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 457 ~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 535 (1135)
..-.|++|++ +++.+. +..|.||...+|.++..+.+|..++.++.+.|.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457899998 444443 568999999999999999999999999999988754 578899999999999999888777
Q ss_pred EecCCCCcEEEEEEcC---CCCEEEEEecCCCCCCeEEEEECCCCeEE-----EEeecccCC------ceeEEEecCCCC
Q 001159 536 DYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIK-----RTYSGFRKR------SLGVVQFDTTRN 601 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-----~~~~~~~~~------~v~~i~~s~~~~ 601 (1135)
.+..+.. +..+.+.| +-...+..+. +....+........... .++..+... .-.++.+++.|.
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 6665433 22333322 1111221110 00011111111111111 111111100 134577787776
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEE-e-CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccc
Q 001159 602 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 679 (1135)
+.+.. .+..+.+|+..++...... . ...|.-.+++.+++|+++++|+|..||.|.+|.--.. ....
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~---- 241 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDS---- 241 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------cccc----
Confidence 65555 4557889998875511111 0 1122234789999999999999999999999964221 0000
Q ss_pred cCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCcc
Q 001159 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~ 759 (1135)
...++.-|
T Consensus 242 ---------------------------------------------------------------~t~t~lHW--------- 249 (792)
T KOG1963|consen 242 ---------------------------------------------------------------ETCTLLHW--------- 249 (792)
T ss_pred ---------------------------------------------------------------ccceEEEe---------
Confidence 00112222
Q ss_pred ceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCC
Q 001159 760 QIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 839 (1135)
|..+| .+++|++||.+|++|+..|.+.+|.+.+++.. .++. -
T Consensus 250 -----------H~~~V-~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq------------------------fLPR--L 291 (792)
T KOG1963|consen 250 -----------HHDEV-NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ------------------------FLPR--L 291 (792)
T ss_pred -----------ccccc-ceeEEecCCceEeecccceEEEEEeecCCCcc------------------------cccc--c
Confidence 56677 99999999999999999999999976543321 1222 1
Q ss_pred CCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC-----------CCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 840 TEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-----------PPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 840 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h-----------~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
..+|..+.+|||+.+.+..- |++|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|
T Consensus 292 -gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 292 -GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred -CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 78899999999999888776 999999998877666665442 22367789999 67788889999999
Q ss_pred EEEEcccceeeEEec-----------CcCCCeEEEEEcCCCCeEEEEc--------CC--CcEEEEeCCCCceeceeeee
Q 001159 908 QIYNVRVDEVKTKLK-----------GHQNRITGLAFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQ 966 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~-----------~h~~~i~~l~~s~d~~~l~s~~--------~D--~~i~iwd~~~~~~~~~~~~~ 966 (1135)
.+||+.+.+.+..+. .+.-.+++++.+-.|.+++|.- .| -.+++|-......--.....
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999998876665442 1223578888888999999874 23 34788977665433222222
Q ss_pred cCCCCCCCCCCceEEEECCCCc-EEEE-EecCeEEEEec-CCceee----c---cCCCCCCCCCEEEEEEeeCCCEEEEE
Q 001159 967 APAGRQSPLVGETKVQFHNDQT-HLLV-VHESQISVYDS-KLECSR----S---WSPKDALPAPISSAIYSCDGLLVYAG 1036 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~-~l~~-~~d~~v~vwd~-~~~~~~----~---~~~~~~h~~~i~~~~~s~d~~~l~~~ 1036 (1135)
....|.. ..+..+.+++... ..++ +.|+.++||-. ....+. . ......|..++++++||.||..|++
T Consensus 450 I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~- 526 (792)
T KOG1963|consen 450 INNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV- 526 (792)
T ss_pred EecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-
Confidence 3333331 2233333344333 5555 68999999988 111111 0 1122357889999999999987665
Q ss_pred eCCCeEEEEECCC-ceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001159 1037 FCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1037 ~~dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~ 1107 (1135)
+.|++|.+||..+ .++.+........... .. -.+-.+.+ ..+.....+.+.+|++.+....|
T Consensus 527 s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~-----~~--~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 SFDDTITIWDYDTKNELLCTEGSRNWPIAE-----LL--FTAQTQND--GALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ecCCEEEEecCCChhhhhccccccccchHh-----Hh--hhcccccc--cceeeccCceEehHhhhhhheec
Confidence 5889999999999 5555554433211111 00 01111213 33444566799999999998888
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=228.09 Aligned_cols=274 Identities=16% Similarity=0.205 Sum_probs=221.0
Q ss_pred ccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEE-EE
Q 001159 770 IAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IA 848 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~-l~ 848 (1135)
+|...| ..+++.+.. .+++++.||++++|+-..... +-...+.+ | .+.|.. ++
T Consensus 12 gH~~DV-r~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~--~-~g~i~~~i~ 65 (745)
T KOG0301|consen 12 GHKSDV-RAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEG--P-KGFIANSIC 65 (745)
T ss_pred cCccch-heeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceeccc--C-cceeeccce
Confidence 477777 788877766 488999999999996322111 11111222 4 556655 77
Q ss_pred eec-CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCC
Q 001159 849 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 926 (1135)
Q Consensus 849 ~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 926 (1135)
|.+ ++-.+++|+ |.+|.+|...+...+.++++|...|.|+.... ++. +++|++|.++++|.. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 775 555677777 99999999999999999999999999999887 665 899999999999964 667778999999
Q ss_pred CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCc
Q 001159 927 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1006 (1135)
.|+++++-|++ .++|||.|++|++|.-.+ .++...||. +-|..+++-+++.++-+++||.|+.|+++++
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 99999999998 889999999999997644 577888888 7899999999999998899999999999999
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
++..+ ++|..-|.++....++..++++++|++++||+.. ++...|.... ...-++...+ +| -|
T Consensus 211 ~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt----------tsiWsa~~L~-Ng-DI 273 (745)
T KOG0301|consen 211 VLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT----------TSIWSAKVLL-NG-DI 273 (745)
T ss_pred eeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc----------cceEEEEEee-CC-CE
Confidence 98875 5678999999999999999999999999999998 5566555332 2233444444 33 68
Q ss_pred EEEecCCcEEEEecC
Q 001159 1087 ALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1087 ~sg~~dg~v~~W~~~ 1101 (1135)
++|+.||.||+|-..
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 899999999999876
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=198.96 Aligned_cols=300 Identities=16% Similarity=0.226 Sum_probs=229.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|.+.|+++.+.|...+++++|+.||.|.|||++.........+ +.+....+...--.+|.-.|..+.|-| |.-.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l----i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL----IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc----eeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 8899999999997666899999999999999986542211000 000001112222457999999999999 66688
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCC-eEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
.+++-|.++++||.++-+... .+ ...+.|.+-+++|-.. ..++|+|..|-.|++.|+.+|...+++.||.+.|.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 889999999999999865432 33 3567788889988543 347889999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEe--------------cCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY--------------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++. +.
T Consensus 194 V~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~ 268 (397)
T KOG4283|consen 194 VEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DD 268 (397)
T ss_pred EEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----cc
Confidence 99999875 68899999999999999865 333332 345568999999999999999986 77
Q ss_pred eEEEEECCCCeEEEE-ee--cccC---CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 568 HLVEWNESEGAIKRT-YS--GFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~-~~--~~~~---~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
.+++|+...|+..-. +- .|.. ..+. +. +.+...++.--.++.+.++++-++..+..+..|. ..|.|.++.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~~ 344 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAYR 344 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEeec
Confidence 899999988763211 10 1111 0111 22 3334445554566899999999999999999883 379999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001159 642 KEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~ 661 (1135)
|+-+...+|..|+.|..|-.
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999976
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=199.74 Aligned_cols=241 Identities=16% Similarity=0.126 Sum_probs=192.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....|+++.|+|.+..|++++.||++++||+....... .+ .|..++.+++|.++.+ +++|+-||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999864332 22 4899999999998664 89999999999999998
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+... .+..|..+|.+|...+.. ..+++||.|++|++||.+.......+... ..|.++..+ |+.|++|+. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeec----C
Confidence 8754 455699999999998766 68999999999999999875444444433 378877664 667777664 7
Q ss_pred CeEEEEECCCCeEEEEe-ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCC-------CCC
Q 001159 567 SHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LPA 634 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~ 634 (1135)
..+.+||+++.....+. ...-.-.++++++-|++.-+++++-||.|.+=.++.. +....++.|.. .-+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 88999999986654322 2222236899999999999999999999998777665 33344554432 136
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++++|+|-...+++|+.||.|.+||+.+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcch
Confidence 899999999899999999999999999877
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=214.32 Aligned_cols=282 Identities=13% Similarity=0.154 Sum_probs=224.8
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
|..-| ..++++...+.+.+++ .|.|+|||+....- ...+. .+..... ...|+++.+.
T Consensus 418 HGEvV-cAvtIS~~trhVyTgG-kgcVKVWdis~pg~-------------------k~Pvs-qLdcl~r-dnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVV-CAVTISNPTRHVYTGG-KGCVKVWDISQPGN-------------------KSPVS-QLDCLNR-DNYIRSCKLL 474 (705)
T ss_pred cCcEE-EEEEecCCcceeEecC-CCeEEEeeccCCCC-------------------CCccc-cccccCc-ccceeeeEec
Confidence 44444 8999999998877765 57899999864211 00000 1112223 7889999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 927 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 927 (1135)
|||+.|++|+ -.++.|||+...... ..+......+.+++.+| |.++.+++..||.|.|||+.+...++.|+||.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 9999999999 588999999865443 33443445678899999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCCc
Q 001159 928 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLE 1006 (1135)
Q Consensus 928 i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~ 1006 (1135)
+.||.+++||..|-||+-|.+|+-||+..+..+.. .. ....|.++-.+|.+.+++++ .++.|.|...++.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hh----hhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 99999999999999999999999999998774332 11 11568899999999999997 5777888777544
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
..-.+ +-|...|.++.|++-|+++++.+.|..+..|...-|..+.+.... ..++++..+. |.++|
T Consensus 625 ~kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-----------SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 625 EKYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-----------SSVLSCDISF-DDKYI 689 (705)
T ss_pred cceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-----------Ccceeeeecc-CceEE
Confidence 44333 345889999999999999999999999999999999888765422 5677888777 66899
Q ss_pred EEEecCCcEEEEec
Q 001159 1087 ALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1087 ~sg~~dg~v~~W~~ 1100 (1135)
+||+.|....+|.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=211.80 Aligned_cols=252 Identities=17% Similarity=0.267 Sum_probs=203.8
Q ss_pred cCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCce-------eeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 405 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~-------~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
-.|.+.|+.+.+-|... .+|+.+..+.|.|||..+.... ++...|.+|.+.-.+++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 35999999999999655 5666788899999998754322 233478899998889999998776 89999999
Q ss_pred CcEEEEEcCCCe-------eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc--CCCceeEecCCCCcEEEE
Q 001159 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 477 ~~i~iwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~ 547 (1135)
++|++||+.... ....+.+|...|..++|++... ..+++++.|+.+.|||++ +.+......+|...+.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997533 2356789999999999999865 799999999999999999 555666788899999999
Q ss_pred EEcCCCCE-EEEEecCCCCCCeEEEEECCCC-eEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceE-
Q 001159 548 AYSADGTR-LFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1135)
Q Consensus 548 ~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1135)
+|+|-+.+ ||+++. |++|.+||+++- +.+.++.+|.+ .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99996655 556654 889999999974 46788999988 89999999976 56677889999999999752221
Q ss_pred -----------EEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCC
Q 001159 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 663 (1135)
..+...+|...|..+.|+|+.. .|++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1233445566899999999655 667888999999998763
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=195.90 Aligned_cols=295 Identities=12% Similarity=0.165 Sum_probs=222.2
Q ss_pred cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.|.++..++.+.. -.|+.||+.|. +||+|+.+|.|.|||+.+...- .++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeEE
Confidence 3555667777665 88999999997 8999999999999999886532 2478999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
+||+||+.|++++.|..|.+||+..|..++.. ....+|+.+.|.|..++..+++-- +..-.+-++..++.. .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999876633 257899999999987763444433 444555555543211 111
Q ss_pred -CCCCCe----eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 495 -GHEAPV----YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 495 -~h~~~v----~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
...+.. .+..|+ ..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |..
T Consensus 146 ~d~d~dln~sas~~~fd--r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFD--RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCcccccccccccccc--CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 111111 112343 455999999999999999999999888777666 78999999999999998875 889
Q ss_pred EEEEECCCC-------eEE--EEeec-ccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 569 LVEWNESEG-------AIK--RTYSG-FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 569 i~~wd~~~~-------~~~--~~~~~-~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
|+.|+++.- ++. +.+.. -....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 999997621 111 11111 0111345789999999998876 4567999999999999999877643 5678
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 638 LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 638 ~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.|+|-...+++- ..|.++||.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988888877 7789999987543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=196.97 Aligned_cols=253 Identities=13% Similarity=0.234 Sum_probs=196.7
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6789999999999999999 8999999999999999999999
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC----cEEEEEEcCCCCEEEEEecCCCCC
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+.++ ...+|+.+.|+|......++ .-.+..-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987644444 43444455555554222221111111 2233468999999999974 8
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC-------ceE--EEEeCCCCCCCcce
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 637 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 637 (1135)
|.+.++|..+.+++..++......|..+.++..|++++.-+.|..||.|++..- ++. +.+..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 899999999999999888776447999999999999999999999999998631 111 11111111123568
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEEcCCCchhhhhccccc
Q 001159 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 638 ~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~ 675 (1135)
+.|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 999999999988775 578999999888 7787777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=205.08 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=202.5
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.|..++|-|||..+++++ +..+.|||.+.|..+.+ +++|++.|+|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 788999999998776655 55899999999988875 889999999999999999999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
.|..|.+|+.+-...++ -.|.+.|.||.|+|-.. .|+||+-. ..-+|...... +...+ ....|.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhh-HHhhh-hheeEEEeee--
Confidence 99999999977654433 25999999999999988 78888744 56788854432 22221 2345666666
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCceeEecC---CCCcEEEEEEcCCCC-----EEEEEecCCCCCCeEEEEECCCCeE
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
..||++++.|-.||+|.+=+-. ++....+.- .+.+|.+++|+|... .+++.-. ..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-cee
Confidence 5577999999999999987543 333333333 556999999999643 2333321 2334444332 333
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
+..-+.-.- ...|+.+.++|.+++.||.|+.+.+|..+ |-.+.++....+ .|+.++..|+++.++.|..||+|..|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehh
Confidence 322111111 35678899999999999999999999754 666666654433 79999999999999999999999999
Q ss_pred EcCC
Q 001159 660 ANSD 663 (1135)
Q Consensus 660 d~~~ 663 (1135)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8743
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=192.39 Aligned_cols=252 Identities=17% Similarity=0.255 Sum_probs=202.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|++.|-.+...=-|+ .|||++.|++|+|+.+..+.... ....|.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 778888888877888 58999999999999998765311 1123789999999999987 8999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eeeeeecCCCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAP 499 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~ 499 (1135)
||+++.||.|.||.-.++ ...+......|...|++++|.|.+-.+.|++++.||.|.|.+.++. ...+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999999887 4445557778999999999999988889999999999999998754 122345679999
Q ss_pred eeEEEeeccCC-c-----------cEEEEEEcCCeEEEEeCcCCCce--eEecCCCCcEEEEEEcCCC----CEEEEEec
Q 001159 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1135)
Q Consensus 500 v~~i~~~~~~~-~-----------~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~----~~l~~~~~ 561 (1135)
|++++|.|..- | ..|++|+.|+.|+||+.++.+-. ..+..|...|..++|.|.- .+|++|+.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988621 1 56999999999999999876432 3578899999999999965 46888874
Q ss_pred CCCCCCeEEEEECCCC--eEE-EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 562 SKEGESHLVEWNESEG--AIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~--~~~-~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+++.||-.+.. .-. ..+..... .+..+.||..|+.|++++.|+.|.+|.-..
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 889999976622 111 12222223 789999999999999999999999997553
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-24 Score=229.81 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=214.6
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588889999987788999999999999999998765544 6889999999999999988 8999999999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+.++.++++.+|...+.++.|+|.. .+.++|+.|+.+++||++..++...+.+|...+..+.|+|+|+++++++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999976 88999999999999999999999999999999999999999999999974
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
|..+++||...|+....|.+|.. .+.++.|+|..-.+++|+.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78999999999999999999988 8899999998888888999999999999998888777654 4579999999999
Q ss_pred CEEEEEECC
Q 001159 645 SLLAVTTSD 653 (1135)
Q Consensus 645 ~~l~~~~~d 653 (1135)
..+++|...
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 988887654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=218.97 Aligned_cols=283 Identities=19% Similarity=0.203 Sum_probs=212.5
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
|.... +.++|.|+|..|++++.||.|++|+...... ....+.+ + ...|.+++.
T Consensus 12 ht~G~-t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~P~ti~~------~-g~~v~~ia~- 64 (933)
T KOG1274|consen 12 HTGGL-TLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------EPETIDI------S-GELVSSIAC- 64 (933)
T ss_pred ccCce-EEEEEcCCCCEEEEecCCCceEEeecCCccc------------------CCchhhc------c-CceeEEEee-
Confidence 55556 9999999999999999999999997543211 0111100 2 556666665
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeE
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 929 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 929 (1135)
++.++++|+ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCcee
Confidence 455888888 89999999998876655655677899999999 899999999999999999999988999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCce
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLEC 1007 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~ 1007 (1135)
+|.|+|.+.+||+.+-||.|++|+++++........-...........+..++|+|+|..+++ +.|+.|++|+. ....
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 999999999999999999999999998875443221111111111245688999999666665 89999999999 5555
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
...+.... +...+..++|||+|+|||+++.||.|.|||+++-+. | .....+.|.+|.| +++-+-
T Consensus 223 ~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~--------~~~~~Vc~~aw~p-~~n~it 286 (933)
T KOG1274|consen 223 QFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------H--------EFKRAVCCEAWKP-NANAIT 286 (933)
T ss_pred heeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------c--------cccceeEEEecCC-CCCeeE
Confidence 45554433 344599999999999999999999999999997111 2 1224566788888 444444
Q ss_pred EEecCCcEEEE
Q 001159 1088 LGMSDGAVHVV 1098 (1135)
Q Consensus 1088 sg~~dg~v~~W 1098 (1135)
.-..-|...+|
T Consensus 287 ~~~~~g~~~~~ 297 (933)
T KOG1274|consen 287 LITALGTLGVS 297 (933)
T ss_pred EEeeccccccC
Confidence 44444544444
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=202.99 Aligned_cols=293 Identities=16% Similarity=0.230 Sum_probs=220.1
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEE-EEeCCCCCCCcceEEEcCC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~ 643 (1135)
...+.+||+++|....++++.....-.++..- .+.+++++. ....+.+|.+....... .+.. .++|.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL---PGPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc---ccceeeeecCCC
Confidence 55699999999999999987622111222111 235666665 45589999987655444 2222 236899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
|.+|+.|+-.|.+++|.+.+| .++..+..
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~a-------------------------------------------------- 121 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLSA-------------------------------------------------- 121 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHHh--------------------------------------------------
Confidence 999999999999999999999 66666544
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
|-..| +++.|+.||..|++++.||.|.+|.+.
T Consensus 122 -----------------------------------------------HYQ~I-TcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 122 -----------------------------------------------HYQSI-TCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred -----------------------------------------------hccce-eEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 44455 999999999999999999999999875
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC--CCEEEEEe-CCeEEEEECCCccEEEEEeC
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMS 880 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~ 880 (1135)
.--.... .........+.. | .-+|+.+...+. ..+|++++ |.++++||+..+.++.++.
T Consensus 154 ~lv~a~~--------------~~~~~p~~~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 154 DLVSADN--------------DHSVKPLHIFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred eeccccc--------------CCCccceeeecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 3211000 000111112223 7 899999988775 45788888 9999999999999998886
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----------------ceeeEEecCcCC--CeEEEEEcCCCCeEEE
Q 001159 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------------DEVKTKLKGHQN--RITGLAFSPTLNALVS 942 (1135)
Q Consensus 881 h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----------------~~~~~~l~~h~~--~i~~l~~s~d~~~l~s 942 (1135)
....+.+++.+| .++.+..|+.+|.|.+.++.. +..+..+.||.+ +|+|++++-||.+|++
T Consensus 216 fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 566899999999 899999999999999988653 234566889999 9999999999999999
Q ss_pred EcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 943 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 943 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
|+.||.|.|||+.+.++++... ... .+|+.+.+.|-.+
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~--~~k------gpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQ--TSK------GPVTNLQINPLER 332 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHh--hhc------cccceeEeecccc
Confidence 9999999999999987554322 111 5678888765533
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=203.11 Aligned_cols=288 Identities=14% Similarity=0.198 Sum_probs=224.6
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCC--CceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCCch
Q 001159 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 590 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 666 (1135)
.|+++.|+|....+++++.|++++||.++. ...++.+.... .+|.++.|.|+|. .+++++....++.||+.+.+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak- 291 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK- 291 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeeccccc-
Confidence 799999999999999999999999998875 34555555543 3899999999999 88999999999999997661
Q ss_pred hhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccc
Q 001159 667 LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746 (1135)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1135)
..+.-.
T Consensus 292 ~~k~~~-------------------------------------------------------------------------- 297 (514)
T KOG2055|consen 292 VTKLKP-------------------------------------------------------------------------- 297 (514)
T ss_pred cccccC--------------------------------------------------------------------------
Confidence 110000
Q ss_pred ccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCC
Q 001159 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 826 (1135)
Q Consensus 747 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1135)
T Consensus 298 -------------------------------------------------------------------------------- 297 (514)
T KOG2055|consen 298 -------------------------------------------------------------------------------- 297 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001159 827 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905 (1135)
Q Consensus 827 ~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg 905 (1135)
..+ +....+....+|+++++||..+ .|.|.+....+++.+.+++ -.+.|..++|+. +++.|.+.+.+|
T Consensus 298 -------~~g--~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~G 366 (514)
T KOG2055|consen 298 -------PYG--VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTG 366 (514)
T ss_pred -------CCC--cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCc
Confidence 000 0023344567788888999888 7999999999999998887 567899999998 889898899999
Q ss_pred cEEEEEcccceeeEEecCcCC-CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCcee-ceeeeecCCCCCCCCCCceEEEE
Q 001159 906 SVQIYNVRVDEVKTKLKGHQN-RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 906 ~v~iwd~~~~~~~~~l~~h~~-~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
.|.+||+.+..++..+....+ .-++++.|+++.+||+|+..|.|.|||.++.-.- ....+.....- ...|+.+.|
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL---tt~Itsl~F 443 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL---TTAITSLQF 443 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh---heeeeeeee
Confidence 999999999999988874322 2467888999999999999999999997652210 11122222221 257899999
Q ss_pred CCCCcEEEEE---ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 984 HNDQTHLLVV---HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 984 s~dg~~l~~~---~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
++|++.||.+ .++.+++-.+ +......|+....--+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 444 NHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999984 4678999888 666666676655446789999999999999999999999999874
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=206.80 Aligned_cols=254 Identities=13% Similarity=0.158 Sum_probs=210.2
Q ss_pred CeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC
Q 001159 359 QTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1135)
Q Consensus 359 ~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~ 438 (1135)
.+++++-.....|.+|.+.......+ ..--.++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------------------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------------------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhhh-------------------hcccccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 34555445556888998876554432 11245689999999999999999999999999999
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---------CCeeeeeecCCCCCeeEEEeeccC
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---------AGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1135)
+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++. +-++++.|..|.-+|+++...+.+
T Consensus 112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 998776 6688999999999999999 89999999999999873 345778899999999999988775
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-------------
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------------- 576 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------------- 576 (1135)
...+++|+|.|.++++||+..+..+..+. ....+.+++.+|-++.+++|+. +|.|.+.++..
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence 55899999999999999999887766654 4567899999999999999975 88888877643
Q ss_pred ---CeEEEEeecccC-CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 577 ---GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 577 ---~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
+..+..+.||.+ ..|+|++++.||..|++|+.||+|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 234566778876 57999999999999999999999999999999999888743 347888888764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=203.68 Aligned_cols=288 Identities=12% Similarity=0.206 Sum_probs=234.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC-eEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~-~la 424 (1135)
.++|++|.|+|..+ +|.+++.||.++||.++......- +. +.-...+|.+..|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------qS--~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------QS--IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------ee--eeeccCccceeeecCCCceEEE
Confidence 57899999999998 788899999999999986432211 00 122457899999999999 899
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
+++....++.||+.+.+.. +...+.++. ..+.....+++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999986543 233444554 3577889999999 89999999999999999999998886 67889999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC-cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC------
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 576 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 576 (1135)
+|+. ++..|++++.+|.|.+||++...++..+...++ .-++++.++++.++++|+. .|.|.|||.++
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 558999999999999999999988887766554 5578889999999999974 88999999653
Q ss_pred CeEEEEeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCC-CCCCCcceEEEcCCCCEEEEEECC
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
.+++..+..-.. .|+++.|++|.+.|+.++ .+..+++-.+.+......+... .....|+|++|+|.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 345555555444 799999999999988876 5678999998887766655432 334578999999999999999999
Q ss_pred CcEEEEEcC
Q 001159 654 NGIKILANS 662 (1135)
Q Consensus 654 g~i~iwd~~ 662 (1135)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999863
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=207.37 Aligned_cols=292 Identities=13% Similarity=0.149 Sum_probs=216.9
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++ ..+ ++++.++.|++||..+.+....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999888876544 6778998764 555 677789999999998877665555433 35678
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC-eEEEEECCCCceEEEE
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1135)
+|+|+++.+++++. .++.|++||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988887776433 467899999999999988764 5778899888776655
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccc
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 705 (1135)
.... .+..++|+|+++++++++ .++.|.+||+.++ +..+.+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~---------------------------------- 195 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKI---------------------------------- 195 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeee----------------------------------
Confidence 4322 357899999999886554 5899999998776 211110
Q ss_pred cCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCC
Q 001159 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSG 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg 785 (1135)
.+...+
T Consensus 196 --------------------------------------------------------------------------~~~~~~ 201 (300)
T TIGR03866 196 --------------------------------------------------------------------------TFEIPG 201 (300)
T ss_pred --------------------------------------------------------------------------eecccc
Confidence 000000
Q ss_pred cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCe
Q 001159 786 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGK 863 (1135)
Q Consensus 786 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~ 863 (1135)
. .. . ......++|+||+++++++. ++.
T Consensus 202 ~------~~--------------------------------------------~-~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 202 V------HP--------------------------------------------E-AVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred c------cc--------------------------------------------c-cCCccceEECCCCCEEEEEcCCCCe
Confidence 0 00 0 11223477888888765543 678
Q ss_pred EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC
Q 001159 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935 (1135)
Q Consensus 864 i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 935 (1135)
|.+||+.+++.+..+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..++. ....++++|+|
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 9999999888876654 455789999999 88888876 4689999999999999999875 46669999875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=201.10 Aligned_cols=299 Identities=15% Similarity=0.217 Sum_probs=226.0
Q ss_pred EEeec-CCCCeeEEEEecCCC-eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..... +..+|++++|+|... .++|+|+..|+|-+||+.+.++..... .++..|..+|.++.|+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFS 243 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEec
Confidence 33344 678999999999876 799999999999999997544433211 1367899999999999
Q ss_pred C-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-eeeecC
Q 001159 418 P-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEG 495 (1135)
Q Consensus 418 p-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~ 495 (1135)
| +-..+.+.+.||+|++-|+++... .....+......+.++.|+.+.. .++.+..=|...+||++++.. ...+.-
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhh
Confidence 9 556899999999999999987532 22223333455678899998888 677777777999999998665 566777
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
|...|.+++++|-.+ .+++|+|.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+|
T Consensus 321 h~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv 395 (498)
T KOG4328|consen 321 HKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRV 395 (498)
T ss_pred hhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEE
Confidence 999999999999876 79999999999999999875543 344568889999999999888887764 888999
Q ss_pred EECC----CCeEEEEeecccC--C--ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc-eEEEcC
Q 001159 572 WNES----EGAIKRTYSGFRK--R--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNK 642 (1135)
Q Consensus 572 wd~~----~~~~~~~~~~~~~--~--~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~ 642 (1135)
||.. .-.+...+.-... . ......|.|+.+++++|-.-..|-|+|-..++.+..+-..... .|. -..|+|
T Consensus 396 ~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP 474 (498)
T KOG4328|consen 396 FDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHP 474 (498)
T ss_pred eecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeecc
Confidence 9983 2223333321111 1 2334679999999999998899999999999888776543322 333 357999
Q ss_pred CCC-EEEEEECCCcEEEEEcC
Q 001159 643 EGS-LLAVTTSDNGIKILANS 662 (1135)
Q Consensus 643 ~~~-~l~~~~~dg~i~iwd~~ 662 (1135)
-+. +++-++..|.|.||-..
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 777 55555567889988644
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=206.81 Aligned_cols=275 Identities=9% Similarity=0.061 Sum_probs=204.4
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~~ 439 (1135)
++++++.|+.|.+||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999988875542 2333 336789999999977 5667889999999998
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~ 519 (1135)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76544 3433433 567899999984 345566789999999999888877753 3446788998755 78888887
Q ss_pred CC-eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC------Ccee
Q 001159 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (1135)
Q Consensus 520 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1135)
++ .+..||..+........ ....+.+++|+++++++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987765544332 2334577999999998876542 377899999999988776653211 0234
Q ss_pred EEEecCCCCEEEE-EeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCCCchhhhh
Q 001159 593 VVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 593 ~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 670 (1135)
.++|+|+++++++ .+.++.+.+||+.+++.+..+... + .+.+++|+|+|++|+++ +.++.|.+||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG-Q--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-C--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 5889999998655 455678999999998877665432 2 57899999999999886 45899999999988 44444
Q ss_pred c
Q 001159 671 L 671 (1135)
Q Consensus 671 ~ 671 (1135)
+
T Consensus 287 ~ 287 (300)
T TIGR03866 287 I 287 (300)
T ss_pred E
Confidence 4
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=186.44 Aligned_cols=245 Identities=14% Similarity=0.217 Sum_probs=180.9
Q ss_pred ccccceEEEEEEec-CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEE
Q 001159 770 IAASKVVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 848 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~-dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~ 848 (1135)
.|...| ..+.|-| |.-.+.+++-|.++++||.++.+. .. .+. - ++.|.+-+
T Consensus 99 ~Hky~i-ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~---------------------a~--~F~---m-e~~VYsha 150 (397)
T KOG4283|consen 99 GHKYAI-SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE---------------------AV--DFK---M-EGKVYSHA 150 (397)
T ss_pred cceeee-eeeEEeeecCceeecccccceEEEeeccccee---------------------eE--Eee---c-Cceeehhh
Confidence 366677 7777777 444556666699999998664321 00 011 1 56677777
Q ss_pred eecCC---CEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eeeEE---
Q 001159 849 LSKND---SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTK--- 920 (1135)
Q Consensus 849 ~s~dg---~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~--- 920 (1135)
+||-. -++|+|. +-+|++-|+.+|..-+++.+|.+.|.++.|+|...-.||+|+.||.|++||+... .+...
T Consensus 151 mSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 151 MSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred cChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 77732 3677777 6789999999999999999999999999999966668899999999999998743 22222
Q ss_pred -----------ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcE
Q 001159 921 -----------LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989 (1135)
Q Consensus 921 -----------l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 989 (1135)
-..|.+.|.+++|+.|+.++++++.|..+++|+..+|+.............. ...-..+. +.+...
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~--~~~~~~~~-~~~s~v 307 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT--TSFAVHIQ-SMDSDV 307 (397)
T ss_pred ccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc--ccceEEEe-ecccce
Confidence 2367788999999999999999999999999999988753332222221111 11112233 334443
Q ss_pred EEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 990 LLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 990 l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
++. -.++.+.++.+ ++..++.+.. |...|.+.+|-|+-+...+|+.|+.|..|-..
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~---h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLST---HLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeec---ccceeeEEeecCchhhhhccccCCcccccccc
Confidence 333 46789999999 8888888754 47889999999999999999999999999873
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=202.26 Aligned_cols=318 Identities=16% Similarity=0.219 Sum_probs=230.0
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
...+.||++.|.++...|.|. +|++|+.||+|+||.+.+|+|++++. ..+.|.|++|+|..+-..|+.+-.+. +.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 346789999999999999999 89999999999999999999999886 56789999999998755555554444 555
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe----EEEEeecccCCceeEEEecCCCC
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
-+..-+..+... +....|+++-.....+..+..|.-.... -++..-.|.. .|..+.|+..|.
T Consensus 469 vnp~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGD 534 (733)
T KOG0650|consen 469 VNPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGD 534 (733)
T ss_pred eCccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCc
Confidence 544332111100 1111222221111235567778654211 1223333444 899999999999
Q ss_pred EEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccc
Q 001159 602 RFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 602 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 678 (1135)
||++... ...|.|.++........+... .+.|.++.|+|...+|++++.. .|+|||+... .+.+.+..
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~ks--kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kq-elvKkL~t----- 605 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKS--KGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQ-ELVKKLLT----- 605 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchhhc--CCceeEEEecCCCceEEEEecc-ceEEEehhHH-HHHHHHhc-----
Confidence 9998653 457889999876655444333 2368999999999998888764 8999998765 44433211
Q ss_pred ccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCc
Q 001159 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (1135)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~ 758 (1135)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCC
Q 001159 759 SQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 838 (1135)
Q Consensus 759 ~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1135)
+
T Consensus 606 -----------------------------------------------------------------------------g-- 606 (733)
T KOG0650|consen 606 -----------------------------------------------------------------------------G-- 606 (733)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred CCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC-ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc---
Q 001159 839 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--- 913 (1135)
Q Consensus 839 h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~--- 913 (1135)
...|..++++|.|.-|+.|+ |+.+..+|+.- .+..+++.-|...+++++|++ .-.++++|+.||++.|+--.
T Consensus 607 --~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 607 --SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred --CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeeh
Confidence 23345566777777777777 78888888763 456778888999999999999 78899999999999998532
Q ss_pred ---cc---eeeEEecCcCCC----eEEEEEcCCCCeEEEEcCCCcEEEE
Q 001159 914 ---VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 952 (1135)
Q Consensus 914 ---~~---~~~~~l~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~iw 952 (1135)
.. -++..+++|... |....|+|...+|++++.||+|++|
T Consensus 684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 22 245678899776 8899999999999999999999998
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=197.58 Aligned_cols=248 Identities=12% Similarity=0.153 Sum_probs=193.6
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeE------------------eecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~------------------l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
-|+++|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+..-+. .|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 367999999999999999864333222222 2379999999999988777 899999999999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
+||+.+|++..++..|.+.|.++.|+|... .+|++|+.|+++.+.|.+.....-..-...+.|..++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999999754 8999999999999999985433322222345788999999888777666
Q ss_pred cCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceE
Q 001159 561 TSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
. .+|+|+-+|++. ++++.++..|.+ .|.++++++.- ..+++++.|+.|++|++..-.+.......-......|.
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 4 489999999996 489999999998 99999998765 56777999999999998754432222111112235677
Q ss_pred EEcCCC-CEEEEEECCCcEEEEEcCCCchhhhhcc
Q 001159 639 RFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 639 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 672 (1135)
++.|+- -.++.|+..+.++|||+.+.....+.|.
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF~ 459 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAFG 459 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHHhhc
Confidence 777754 4677888888999999988855555543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=213.34 Aligned_cols=297 Identities=11% Similarity=0.179 Sum_probs=227.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~la 424 (1135)
+....++...++-..++++| ...+.||.+........ +.+..-. -..-...+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~--~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEK--CNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcc--eeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 34677778888877665555 34777887765432211 1100000 001123466788886 678999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+++..|.|.+||+.....-+....+..|...|.++.|++.... +|+|||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333367899999999999998776 899999999999999999999999999889999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
|+|.. +..++++...|.+++||++... +...+.+|.++|.|+.|+|++.+|++||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99986 5899999999999999998754 46688999999999999999999999985 889999999877766555
Q ss_pred ecccCCceeEEEecCCCCE-EEEEe--CCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEE
Q 001159 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 658 (1135)
..+...+|.++.|-|...+ |++++ .|-.|+|||++.. -+..++..|. ..++.++|.. |...+.+++.||++..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEeecCccHHHH
Confidence 5556668999999998765 45444 6889999999863 3455666554 4788999976 6667888888888765
Q ss_pred EEcCCC
Q 001159 659 LANSDG 664 (1135)
Q Consensus 659 wd~~~~ 664 (1135)
-..++.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 544444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=204.76 Aligned_cols=290 Identities=17% Similarity=0.213 Sum_probs=212.2
Q ss_pred EEEEec--CCCeEEEEEeccceEEEEEcCCcccc-ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 351 SMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 351 ~v~~sp--~g~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
++.|++ +.+++||.+..||.|.++|....... ....| .....|...|..+.|-|....|++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEcc
Confidence 455553 55679999999999999998754322 11111 12346999999999999777899999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-------------------
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------- 488 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------------------- 488 (1135)
.|.++++||+++.+..... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9999999999998776543 46799999999999999887 89999999999999986322
Q ss_pred --------eeeeecCCCCCeeE---EEeeccCCccEEEEEEc-CCeEEEEeCcCCCceeE--------ecCC---CCcEE
Q 001159 489 --------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWCT 545 (1135)
Q Consensus 489 --------~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~ 545 (1135)
.++....+...|.+ +.+.-+ ...|++++. |+.|++||++....... +..+ ...+.
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEec--cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01112234444444 333233 378999887 99999999987654332 2222 23678
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe--EEEEeecccCCcee-EEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~-~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++.....|.+|++.+. |+.|+.||+.+-. ++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888998887664 8899999998543 44555554432222 234689999999999999999999988553
Q ss_pred -EEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCCC
Q 001159 623 -LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 -~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
...+.+| ...|.+++|.| .-.-++++++|..++||++.++
T Consensus 352 ~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3334444 44799999988 3345677799999999999766
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-22 Score=214.61 Aligned_cols=249 Identities=12% Similarity=0.198 Sum_probs=198.6
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEEEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVA 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~ 426 (1135)
....|+|+.--..+|||++..|.|.+||+.... .. ....+|..|...|+++.|++. ..+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rn--------------k~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RN--------------KLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--cc--------------hhhhHhhhhccceeeeeeccCCccEEEec
Confidence 456788887666699999999999999998621 10 011237789999999999994 5688999
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEe
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~ 505 (1135)
+.||.|++||++..+... .+.+....|.+|.|+|.... .|+++.+.|.+++||++. .++...+..|.++|.|+.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876554 56677889999999997655 899999999999999985 4567788999999999999
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-CCcEEEEEEcCCCCE-EEEEecCCCCCCeEEEEECCCCe-EEEE
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGA-IKRT 582 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~~~~ 582 (1135)
+|+. .+|+||+.|++|+|||+.+.+.......+ ..++.++.|-|...+ |++++. -.+..|+|||++..- +..+
T Consensus 229 hPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 9944 89999999999999999876665544444 458899999998775 555554 347789999998654 4567
Q ss_pred eecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCc
Q 001159 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+..|.+ .++.++|.. |...+.+++.||+|..-.+++..
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 778877 889999975 45678889999988776665543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-21 Score=199.58 Aligned_cols=327 Identities=12% Similarity=0.225 Sum_probs=238.1
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC--EEEEEECCCcEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 657 (1135)
-..+.+|.+ .|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.|++|+|.+. .||++... .+.
T Consensus 393 ~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVL 467 (733)
T ss_pred eeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceE
Confidence 345788888 89999999999999999999999999999999999998764 589999999654 44444444 466
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
|.+..-|.++.... ..... +-.|
T Consensus 468 ivnp~~G~~~e~~~---t~ell---------------------------~~~~--------------------------- 490 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP---TKELL---------------------------ASAP--------------------------- 490 (733)
T ss_pred EeCccccchhhhcc---hhhhh---------------------------hcCC---------------------------
Confidence 76654442211110 00000 0000
Q ss_pred cccccccccccccccCCcCCcc--ceeEeecCCcccccceEEEEEEecCCcceeEeccc---ceeeeEEeccccCCCCCc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPS--QIKALRLPDSIAASKVVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~d---g~i~iw~~~~~~~~~~~~ 812 (1135)
.....+..+..|.-....... .+..+. |...| ..+.|+..|.+|++...+ ..|.|+++..
T Consensus 491 -~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i-~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-------- 555 (733)
T KOG0650|consen 491 -NESEPDAAVVTWSRASLDELEKGVCIVIK-----HPKSI-RQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-------- 555 (733)
T ss_pred -CccCCcccceeechhhhhhhccceEEEEe-----cCCcc-ceeeeecCCceEEEeccCCCcceEEEEeccc--------
Confidence 001112345556544322111 122222 67788 999999999999988764 4455554432
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEec
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 892 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp 892 (1135)
...+.-.-. - .+.+.++.|+|...++++++...|+|||+..+.+++.+......|..++++|
T Consensus 556 --------------~~sQ~PF~k---s-kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 556 --------------RKSQSPFRK---S-KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred --------------ccccCchhh---c-CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 111111111 1 6788999999999999999999999999999888888887788899999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCce----eceeeeec
Q 001159 893 QDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK----LKSRFIQA 967 (1135)
Q Consensus 893 ~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~----~~~~~~~~ 967 (1135)
.|..|+.|+.|+.+..+|++-+ ++.++++.|...+++|+|++.-.++++|+.||++.|+--.-... .....+..
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 8888999999999999999844 67788999999999999999999999999999999984332111 11235666
Q ss_pred CCCCCCC-CCCceEEEECCCCcEEEE-EecCeEEEEe
Q 001159 968 PAGRQSP-LVGETKVQFHNDQTHLLV-VHESQISVYD 1002 (1135)
Q Consensus 968 ~~~~~~~-~~~v~~~~~s~dg~~l~~-~~d~~v~vwd 1002 (1135)
+.||... ..+|..+.|+|..-+|++ +.|++|++|.
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 7777643 256889999999999999 6899999983
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-21 Score=201.61 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=205.7
Q ss_pred cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeE
Q 001159 786 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKV 864 (1135)
Q Consensus 786 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i 864 (1135)
..|+++.++|.|.++|.....+. ++...+ ..-..| .+.|..+.|.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~l----k~~~aH-~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQL----KKPLAH-KNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhh----cccccc-cceeEeeccCCCceeEEEccCCcee
Confidence 34777788999999986543321 111100 111228 99999999999667788887 8999
Q ss_pred EEEECCCccEEEE--EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--------------------------
Q 001159 865 SLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-------------------------- 916 (1135)
Q Consensus 865 ~vwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-------------------------- 916 (1135)
++||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 899999999999999889999999999999999975211
Q ss_pred -eeEEecCcCCCeEE---EEEcCCCCeEEEEcC-CCcEEEEeCCCCceecee---eeecCCCCCCCCCCceEEEECCCCc
Q 001159 917 -VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSR---FIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 917 -~~~~l~~h~~~i~~---l~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.+.....|.+.|.+ +.+..|...||++|. |+.|+|||+......... .......+.....++.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 11122345556666 667789999999998 999999999875532111 1111222222336777888888888
Q ss_pred EEEE-EecCeEEEEecCCceeeccCCCCCCCC--CEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceecccc
Q 001159 989 HLLV-VHESQISVYDSKLECSRSWSPKDALPA--PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1065 (1135)
Q Consensus 989 ~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~--~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~ 1065 (1135)
+|.+ +.|+.|++|++....+.......++.. --..-..|||+.+|++|+.|...++|.+.+.+.--.+
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~--------- 355 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL--------- 355 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh---------
Confidence 8888 789999999993333322222222111 1112346899999999999999999999985433211
Q ss_pred ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1066 AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
...+.+.+.++.|.|..-.-++|+++|.++++|++..+-
T Consensus 356 l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 123446677888888766778888999999999996543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=179.97 Aligned_cols=255 Identities=13% Similarity=0.193 Sum_probs=194.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCC-CceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
..+|.+-|.++.|.+-|+.+|+|+.|++|+|||...+ .........+.|.+.|..+.|.+. |+ .+|+++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4679999999999999999999999999999996443 445666678899999999999764 56 899999999999
Q ss_pred EEEcCC------C---eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee------Eec-------
Q 001159 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV------DYD------- 538 (1135)
Q Consensus 481 iwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~------- 538 (1135)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|||+.-...... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998521 1 133456677889999999999988999999999999999765433222 111
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEecC-CCCCCeEEEEECCCC----eEEEEeecccCCceeEEEecCCC----CEEEEE
Q 001159 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~i~~s~~~----~~l~~~ 606 (1135)
.+.....|+.|+|. ..+|++++.+ ...-+.++||....+ ..+.++.+|.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999874 3467766532 112346778876543 24556777777 99999999963 468889
Q ss_pred eCCCeEEEEECCCCc-----------------eEEEEe-CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+.|| |+||.+.... .+..+. ...|...|..+.|+-.|..|++.++||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 23445589999999999999999999999999764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=177.00 Aligned_cols=258 Identities=12% Similarity=0.123 Sum_probs=187.8
Q ss_pred CCCCceEEEEeecCCCEEEEEe-CCeEEEEECC----CccEEEEEeCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEEc
Q 001159 839 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGMEDSSVQIYNV 912 (1135)
Q Consensus 839 h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~s-p~~~~~lasg~~dg~v~iwd~ 912 (1135)
| ..-|.++.|.+-|+++|+++ |++|+|||.. +..+....+.|.+.|..+.|. |.-|+.+|+++.|+++.||.-
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 7 88899999999999999999 9999999964 356777889999999999996 446899999999999999975
Q ss_pred cc---------ceeeEEecCcCCCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCCCceeceeeeec-C----CCCCCCCC
Q 001159 913 RV---------DEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQA-P----AGRQSPLV 976 (1135)
Q Consensus 913 ~~---------~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~----~~~~~~~~ 976 (1135)
.. .....++....+.|++|.|.|. |-.||+++.||.++||+.-..-.+....++. . ........
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 21 1244567777889999999995 6799999999999999876533322221111 0 01111125
Q ss_pred CceEEEECCCC---cEEEEEecC------eEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCC----CEEEEEeCCCe
Q 001159 977 GETKVQFHNDQ---THLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGA 1041 (1135)
Q Consensus 977 ~v~~~~~s~dg---~~l~~~~d~------~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~----~~l~~~~~dg~ 1041 (1135)
...|+.|.|.. .+||++.+. .++||.. .++.........+|..+|+.++|.|+- ..||+++.||
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 66788888653 578887766 8999998 454444444455889999999999963 4699999999
Q ss_pred EEEEECCCce------------eeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1042 IGVFDAETLR------------FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1042 I~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
|+||.+.... ....+..........|...+. .+.|.- -|..|++.|.||+|++|..+
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW--RVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE--EEEEee-eeeEEeecCCCceeeehhhh
Confidence 9999998421 112222222111222333344 555655 57899999999999999865
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-20 Score=194.15 Aligned_cols=273 Identities=14% Similarity=0.220 Sum_probs=210.0
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|.+++|+.||+++++|+.|..|.+|...-.-.
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999988775 55799999999999999999999 999999999999999999999999998654322
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+. + +|.+.|.|+.|+|-...|++++-. ..-+|..... ...+ +.
T Consensus 88 Lk-Y---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K----~k--------------------------- 130 (1081)
T KOG1538|consen 88 LK-Y---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSK----HK--------------------------- 130 (1081)
T ss_pred ee-e---ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHh----hh---------------------------
Confidence 22 1 234579999999998889888754 4566754322 1110 00
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 782 (1135)
....+ .+.+|+
T Consensus 131 --------------------------------------------------------------------ss~R~-~~CsWt 141 (1081)
T KOG1538|consen 131 --------------------------------------------------------------------SSSRI-ICCSWT 141 (1081)
T ss_pred --------------------------------------------------------------------hheeE-EEeeec
Confidence 12334 889999
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCc-ceeccCCCCCCCCCceEEEEeecCC-----CEE
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-LMTNDINESKPTEESAACIALSKND-----SYV 856 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~~i~~l~~s~dg-----~~l 856 (1135)
.||++++.|-.+|+|.+-+ .+|+ .....-++ +. ..+|.+++|+|.. ..+
T Consensus 142 nDGqylalG~~nGTIsiRN-----------------------k~gEek~~I~Rpg-g~-Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRN-----------------------KNGEEKVKIERPG-GS-NSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred CCCcEEEEeccCceEEeec-----------------------CCCCcceEEeCCC-CC-CCCceEEEecCCCCCCccceE
Confidence 9999999999999998742 1222 11111222 24 8899999999953 356
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 935 (1135)
++.+ ..++.++.+. |+.+..-+.-.-.-.|+.+-+ +|.++..|+.|+.+.+|.- .|-.+.++.....-|+.++..|
T Consensus 197 aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEcc
Confidence 6666 6777777774 455544444455678999999 8999999999999999974 4666777776777899999999
Q ss_pred CCCeEEEEcCCCcEEEEeCC
Q 001159 936 TLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~ 955 (1135)
+++.++.|+.||+|.-|++.
T Consensus 274 NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCceEEEEEccCeeehhhhH
Confidence 99999999999999999875
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=180.39 Aligned_cols=298 Identities=17% Similarity=0.278 Sum_probs=218.0
Q ss_pred eeeEEeec--CCCCeeEEEEec----CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcc
Q 001159 337 KTVVRTLN--QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 337 ~~~~~~~~--h~~~V~~v~~sp----~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+....+. |+.+|..++|++ +...++|+.+ ...+.+|+......+. .++...-..|...
T Consensus 27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Es 91 (385)
T KOG1034|consen 27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDES 91 (385)
T ss_pred eEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcc
Confidence 34444444 788999999985 3334666665 4588999887543221 0111112347888
Q ss_pred eEEEEEcCC----CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 411 VNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 411 V~~v~~spd----~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
...++|+-| ..+||.|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQT 167 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccC
Confidence 889999865 3489999999999999999987666 67899999999999999877 899999999999999999
Q ss_pred Ceeeeee---cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee----------------------------
Q 001159 487 GRKQYTF---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---------------------------- 535 (1135)
Q Consensus 487 ~~~~~~~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---------------------------- 535 (1135)
..++..| .+|.+.|.++.|++++ .++++++.|.++++|++...+-..
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 9999887 4699999999998865 799999999999999987322110
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCe-------------EEEEeecccCCceeEE--EecCC
Q 001159 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGA-------------IKRTYSGFRKRSLGVV--QFDTT 599 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~-------------~~~~~~~~~~~~v~~i--~~s~~ 599 (1135)
.-..|...|-|+.|- |+++++-+. ++.|..|... -++ .+..+.-..- .+.-+ +|++-
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~ 318 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPW 318 (385)
T ss_pred ccccccchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHH
Confidence 112233344444443 456776543 7789999872 111 1222222222 34444 55667
Q ss_pred CCEEEEEeCCCeEEEEECCCCceE--EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 600 RNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
++.|+.|...|.|++||++..++. .++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 889999999999999999987653 344444445679999999999999999999999999853
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=220.43 Aligned_cols=252 Identities=15% Similarity=0.270 Sum_probs=207.8
Q ss_pred CCcceEEEEEcCCCCe----EEEEeCCCeEEEEEeCC---CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 407 AAISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~----las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
.....+.++|++.|.. ||.|..||.|.+||... +...........|.+.|..+.|++.... +|++|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 3456889999998876 88899999999999876 4444444567789999999999998776 89999999999
Q ss_pred EEEEcCCCeeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC--cEEEEEEcCCCCE
Q 001159 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~ 555 (1135)
.|||+.+-+.-.++. .-...|.+++|+..- ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998866555442 245689999998653 37899999999999999999988877766554 5789999998764
Q ss_pred -EEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCC
Q 001159 556 -LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 -l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
|++++ +.|+.-.|.+||++. ...++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+.
T Consensus 221 ql~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n- 297 (1049)
T KOG0307|consen 221 QLLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN- 297 (1049)
T ss_pred eeeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-
Confidence 44444 556788999999985 456788888887 89999999877 7888999999999999999999999986433
Q ss_pred CCcceEEEcCCC-CEEEEEECCCcEEEEEcCCC
Q 001159 633 PASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+..+.|.|.. ..+++++-||.|.|+.+.+.
T Consensus 298 -W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 -WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred -ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 78999999954 58889999999999998765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-22 Score=212.36 Aligned_cols=233 Identities=11% Similarity=0.223 Sum_probs=210.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|..+|.++.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 677888998866676 789999999999999865443322 789999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
.|+.+|+|++||+...+.++ .|.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999987777 8889999999999999999 789999999999999998889999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|++ .++++++.|.++++||...++....+..|...+.++.|+|..-.++.|+. |+++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98865 89999999999999999999999999999999999999999888888875 8899999999999988887
Q ss_pred cccCCceeEEEecCCCCEEEEEeCC
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~d 609 (1135)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7765 89999999999988888654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=181.37 Aligned_cols=303 Identities=18% Similarity=0.233 Sum_probs=219.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
...+|..+.|.+++...+|||+.|..|+||.++.+..-... .. ..-...+..|...|++|.|+|+|.+||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~~---------V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-MK---------VEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-ee---------EEEeecccCCcceeEEEEEcCCcCeee
Confidence 35699999999988767999999999999999876543210 00 111224788999999999999999999
Q ss_pred EEeCCCeEEEEEeC--------C-----CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 425 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 425 s~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
+|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++-|..+++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222344557789999999999999999 89999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-------------------CCC----CcEEEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------APG----NWCTMMA 548 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~i~~~~ 548 (1135)
.+.+|...|..++|.|.. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999999876 899999998877777655433222110 011 1234678
Q ss_pred EcCCCCEEEEEecCCCC-----CCeEEEEECCC-CeEEEEeecccCCceeEEEecC------------------CCCEEE
Q 001159 549 YSADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT------------------TRNRFL 604 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~------------------~~~~l~ 604 (1135)
|+|||..+++...--+- -+..++++-.. .+++..+.+... ....+.|+| .+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999865421111 12334554331 223333333332 233333332 223344
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++ ...|++||.++..++.....- +...++.++|++||..++..+.||...+..++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 454 458999999998888777532 2347999999999999999999999988877665
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=174.61 Aligned_cols=289 Identities=12% Similarity=0.175 Sum_probs=210.4
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc-------CCC
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDG 420 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pd~ 420 (1135)
-.-.+.|||||.. +.+-+.|..+.+|++...-.-......+ ..+....+-......|...+|- |+.
T Consensus 51 f~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 3457899999985 5567899999999986321110000000 0001111111234567777775 678
Q ss_pred CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC---CEEEEEEecCCCeEEEEEEcCCCcEEEEEc-CCCeeee---ee
Q 001159 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQY---TF 493 (1135)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~~---~~ 493 (1135)
.++|+.+.+.-|++||.-+|+....... -.|.. ...+++|+|||. .|+. +..+.|+++|+ +.|+.-. ++
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~-ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRA-YDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhh-hhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 8999999999999999999875442222 23443 356899999999 4554 55889999999 5554221 11
Q ss_pred ----cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 494 ----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 494 ----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+..+-|.+++|+|... ..++.|+.-.++-||.-...+....+-+|.+.|+.+.|.++|+.|++|+. .+..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeE
Confidence 13367789999999864 68999999999999988888899999999999999999999999999985 56789
Q ss_pred EEEECCC-CeEEEEeecccCCceeE--EEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 570 VEWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 570 ~~wd~~~-~~~~~~~~~~~~~~v~~--i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
..||++. +.++..+..|.+..-.. ....|++++|++|+.||.|++||+++ +..+..+..+.. .++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccc
Confidence 9999985 45566666654422222 45578999999999999999999998 776777765544 799999999988
Q ss_pred EEEEEECC
Q 001159 646 LLAVTTSD 653 (1135)
Q Consensus 646 ~l~~~~~d 653 (1135)
++++++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88877654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-17 Score=188.93 Aligned_cols=374 Identities=22% Similarity=0.397 Sum_probs=286.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCCCC-CeeEEEeeccCCcc-EEEEEEc-CCeE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA-PVYSVCPHHKESIQ-FIFSTAI-DGKI 523 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~i~~~~~~~~~-~l~s~s~-dg~i 523 (1135)
.+..|...+.++.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3557899999999999998 78888899999999998887 6777776443 77888774 44445 5555444 9999
Q ss_pred EEEeCcC-CCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-
Q 001159 524 KAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN- 601 (1135)
Q Consensus 524 ~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~- 601 (1135)
.+||... ......+..|...|..++|+|++..+++++. .++.+++|+...+..+..+.+|.. .+.+++|+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999998 6777788899999999999999998877742 388999999999899999998777 899999999998
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccccc
Q 001159 602 RFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 680 (1135)
.+++++.|+.|++||...+..+. .+..+.. .+ ...|++++..+++++.|+.+++|+..........+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 55555899999999998777777 5666544 22 22899999899999999999999987662200000
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
..|...+ .++.|.|++..+++++.|+.+.+|+...... ..... ...|
T Consensus 281 --------~~~~~~v-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~- 327 (466)
T COG2319 281 --------SGHSSSV-LSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGH- 327 (466)
T ss_pred --------ecCCccE-EEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-eccc-
Confidence 0134555 8889999888888888888889996543211 11000 1114
Q ss_pred CCceEEEEeecCCCEEEEE-e-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~ 917 (1135)
...+..+.+.+++..++.+ . |+.+.+|++............. .+..+.+++ + ..++. +..++.+.+|+......
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCee
Confidence 5578888884343566666 3 7889999998877333333222 289999998 7 55555 78999999999998887
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
......+...+....+++++..+++++.++.+++|+..+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 777665547899999999999999999999999999987
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=174.88 Aligned_cols=301 Identities=14% Similarity=0.188 Sum_probs=203.7
Q ss_pred ccccceEEEEEEec----CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 770 IAASKVVVRLIYTN----SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~----dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
.|..+| ..++|.+ +...+++..+...+.+|....... ++ ++.. .....| +....
T Consensus 36 d~~~~I-~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-----------ir--------~lq~-y~D~d~-~Esfy 93 (385)
T KOG1034|consen 36 DHNKPI-FGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-----------IR--------LLQS-YADEDH-DESFY 93 (385)
T ss_pred cCCCcc-ceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-----------ee--------eeee-ccCCCC-CcceE
Confidence 466677 8888874 444566666677888887653210 11 1111 111124 66667
Q ss_pred EEEeecC----CCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 846 CIALSKN----DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 846 ~l~~s~d----g~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
.++|+-| .-++|.|+ -|.|+|.|+.++++...+.+|..+|+.+.|.|+..++|++++.|.+|++|++++..++..
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V 173 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV 173 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE
Confidence 7777654 33677776 799999999999999999999999999999998889999999999999999999999988
Q ss_pred e---cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeee---cCCCCCC-----------------CCCC
Q 001159 921 L---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ---APAGRQS-----------------PLVG 977 (1135)
Q Consensus 921 l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~---~~~~~~~-----------------~~~~ 977 (1135)
+ .+|.+.|.++.|+.+|.+++|+|.|.++++|++...+-....... ..++... ....
T Consensus 174 fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 6 579999999999999999999999999999999854321111000 0000000 0011
Q ss_pred ceEEEECCCCcEEEE-EecCeEEEEec-CCce-eeccCCC----------CCCCCCEEEEEEe--eCCCEEEEEeCCCeE
Q 001159 978 ETKVQFHNDQTHLLV-VHESQISVYDS-KLEC-SRSWSPK----------DALPAPISSAIYS--CDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 978 v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~-~~~~~~~----------~~h~~~i~~~~~s--~d~~~l~~~~~dg~I 1042 (1135)
|-++.|- |.++++ +.++.|..|.. +.+. +....+. ..-...|+-+.|+ |-++.||.|...|.|
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 1111111 567777 78889999987 2211 1111111 1114456666554 567899999999999
Q ss_pred EEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1043 GVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1043 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
++||++..+....-.... . .....+.-.+|+. |+.+|+...+|++|.-||--
T Consensus 332 ~vwdL~~~ep~~~ttl~~----s--~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTH----S--KSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEEe----c--cccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999876641111110 0 1112233456666 88999999999999999853
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=180.88 Aligned_cols=209 Identities=15% Similarity=0.205 Sum_probs=167.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC----eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
...-|.++|++++|.|....-++++|..-|.|-+||+.+. ..+..+..|.++|.++.|+|.+. ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 4556889999999999876448999999999999999532 34567788999999999999866 789999999999
Q ss_pred EEEeCcCCCceeEecC--CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCC
Q 001159 524 KAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
++-|++.......+.. ....+..+.|+.+...++.+.. -|.+.+||.+++.. ...+..|.. .|.+++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987665444444 5567888999888888887753 55899999997654 666677777 89999999976
Q ss_pred -CEEEEEeCCCeEEEEECCCCceEE--EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 601 -NRFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 601 -~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.+++++|.|++++|||++...... .+..-.+...|.++.|||.+-.|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 467889999999999998633222 23333445589999999988779999999999999963
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=178.29 Aligned_cols=267 Identities=13% Similarity=0.213 Sum_probs=192.3
Q ss_pred ceeeEEeecCCCCeeEEEEecCC-CeEEEEEeccceEEEEEcCCccc-cccCCceeecccccccchhhhhccCCCcceEE
Q 001159 336 TKTVVRTLNQGSNVMSMDFHPQQ-QTILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 336 ~~~~~~~~~h~~~V~~v~~sp~g-~~lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
|.-......|.+.++.+.-++-| ..++|+=+..|.|.||++...-. +..-...+-+ +...+...+.+|...=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 44445666688888888888875 34677778899999999864211 1100000000 112233347789999999
Q ss_pred EEEcCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---ee
Q 001159 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1135)
Q Consensus 414 v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~ 489 (1135)
++|||- ...|++|..-+.|++|...++.-..-...+.+|+..|..++|||.... .|+|||-||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 234788888889999999987654444467789999999999998777 8999999999999999988 34
Q ss_pred eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC---CceeEecCCCCcEEEEEEcCCCCEEE-EEecCCCC
Q 001159 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEG 565 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~ 565 (1135)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. +.+..++.|..+|+++.|+|...-++ +++ .
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg----~ 368 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG----E 368 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----C
Confidence 444 7899999999998765 59999999999999999864 45668999999999999999665444 444 3
Q ss_pred CCeEEEEECCCCeE----------------EEEeeccc-CCceeEEEecCCC-CEEEEEeCCCeEEEE
Q 001159 566 ESHLVEWNESEGAI----------------KRTYSGFR-KRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~----------------~~~~~~~~-~~~v~~i~~s~~~-~~l~~~~~dg~i~iw 615 (1135)
|.+|.+||+..-.- .+-+-.|. +..+.-+.|++.- .++++.+.|| +.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 88999999853111 11112221 1246678888764 4677777777 3444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=172.29 Aligned_cols=407 Identities=12% Similarity=0.131 Sum_probs=257.8
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
-+.|||+|+++|+++.- .+.|-|..+-+..+.. .--..|..+.|..|... .|.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999776 6888887774433211 12356889999999885 566778899999999999988888
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
+....+++.+++|+|++. ..|.+...|-.|.+|.+.+..... +......+..++|+|||++.+.++.. |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 988899999999999764 577778889999999998765543 33344556889999999999987631 211223233
Q ss_pred ECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
.-....+++.+..... ..+.+.|+|||+.+++-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2233344555555544 567799999998877532 22222222211 147889999999999999
Q ss_pred ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCC
Q 001159 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.|+.+||.+--+- +.+..+- |...+
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~---------------------------------------------------- 254 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSY---------------------------------------------------- 254 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhc----------------------------------------------------
Confidence 99999999876544 1111110 10000
Q ss_pred Cccccccccccccccc-ccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCC
Q 001159 731 SRLVDVKPRVAEDVDK-IKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 809 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 809 (1135)
.|-+ ..++.- ......+. | .++.|.|..- ...+|.........
T Consensus 255 ------------~dp~~~~~~ke-------~~~~~ql~---~-----~cLsf~p~~~---------~a~~~~~se~~YE~ 298 (447)
T KOG4497|consen 255 ------------HDPTLHLLEKE-------TFSIVQLL---H-----HCLSFTPTDL---------EAHIWEESETIYEQ 298 (447)
T ss_pred ------------cCchhhhhhhh-------hcchhhhc---c-----cccccCCCcc---------ccCccccchhhhhh
Confidence 0000 000000 00000000 0 3344443221 00111100000000
Q ss_pred CCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeC---CeEEEEECCCccEEEEEeCCCCCeE
Q 001159 810 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAAT 886 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~ 886 (1135)
. ...+. ....+... +.+ ++ .-.+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|.
T Consensus 299 ~-----~~pv~---~~~lkp~t-D~p--nP-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pir 365 (447)
T KOG4497|consen 299 Q-----MTPVK---VHKLKPPT-DFP--NP-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIR 365 (447)
T ss_pred h-----hccee---eecccCCC-CCC--Cc-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hcccee
Confidence 0 00000 00000000 011 12 556778999999999999975 679999999877655543 556899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCc
Q 001159 887 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 948 (1135)
Q Consensus 887 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 948 (1135)
...|+| +...|+.+.....+++|.......+.. .+.+-.|..+.|..+|..++-.+.|..
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 999999 777888888788899998765444433 334467999999999999999999874
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-16 Score=184.06 Aligned_cols=371 Identities=22% Similarity=0.384 Sum_probs=279.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-ceeeeeEeeccc-CCEEEEEE-ecCCCeEEEEE-EcCCCcE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~-~~v~~v~~-s~d~~~~~l~s-~~~d~~i 479 (1135)
...|...|.++.+.+.+..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999999875 333 444533 36777777 777763 3444 4459999
Q ss_pred EEEEcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 480 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 480 ~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
.+||... ......+..|...|..++|+|.. ..+++++. |+.+++|+.........+..|...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888899999999999999876 57888875 99999999998777888888999999999999998444
Q ss_pred EE-ecCCCCCCeEEEEECCCCeEEE-EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce-EEEEeCCCCCCC
Q 001159 558 SC-GTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 634 (1135)
Q Consensus 558 ~~-~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 634 (1135)
.+ + .++.|.+||...+..+. .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+..| ...
T Consensus 215 ~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 286 (466)
T COG2319 215 ASGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSS 286 (466)
T ss_pred EEec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Ccc
Confidence 43 3 38889999999888888 6888776 33 338999998899999999999999987665 4444333 457
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 714 (1135)
+.++.|+|++..+++++.|+.+.+|+..+.. ......
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee------------------------------------------
Confidence 9999999988888889999899999876652 111110
Q ss_pred CCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEe-cc
Q 001159 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLAL-AS 793 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~-~~ 793 (1135)
...|...+ ..+.+.+++..++.+ ..
T Consensus 324 -----------------------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 349 (466)
T COG2319 324 -----------------------------------------------------LKGHEGPV-SSLSFSPDGSLLVSGGSD 349 (466)
T ss_pred -----------------------------------------------------ecccCCce-EEEEECCCCCEEEEeecC
Confidence 00022233 666663332445555 56
Q ss_pred cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEE-Ee-CCeEEEEECCC
Q 001159 794 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS-AS-GGKVSLFNMMT 871 (1135)
Q Consensus 794 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~-~~-dg~i~vwd~~~ 871 (1135)
|+.+.+|++.... ... ... . ...+..+.+++ ...+.. +. ++.+.+|+...
T Consensus 350 d~~~~~~~~~~~~----------------------~~~-~~~---~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG2319 350 DGTIRLWDLRTGK----------------------PLK-TLE---G-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLST 401 (466)
T ss_pred CCcEEeeecCCCc----------------------eeE-Eec---C-CceEEEEEECC-CCCEEEEecCCCceEEEeccc
Confidence 7788888654321 000 011 1 22278888888 543443 34 79999999998
Q ss_pred ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 872 ~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
.........+...+....+++ ++..+++++.++.+++|+..+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 402 GSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CeeeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 888777765547899999999 888999999999999999987
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=180.63 Aligned_cols=294 Identities=13% Similarity=0.136 Sum_probs=217.4
Q ss_pred ecCCCCCCccccCCCcceee-EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccc
Q 001159 320 FAGVAHTPNVYSQDDLTKTV-VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~-~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
+...|....+|......... .......-.|.+++|+......+|+-+.|..+++|.-... ..+ + +
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~--V----------p 72 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPE--V----------P 72 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCc--c----------c
Confidence 34455556666554433322 2222233359999999987534444466778999975433 110 0 0
Q ss_pred hhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
... .+.+. .-.|++......|+++|+..+.|+|||++...+.+ .+.+|...|++|.++-.+. +||+++..|.
T Consensus 73 ~~~-k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~gGd 144 (673)
T KOG4378|consen 73 RVR-KLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDGGD 144 (673)
T ss_pred eee-ccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccCCc
Confidence 000 12222 33344444445899999999999999999643333 6789999999999998888 8999999999
Q ss_pred EEEEEcCCCeeeeeecCCCC-CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecCCCCcEEEEEEcCCCCE-
Q 001159 479 IKVWDVVAGRKQYTFEGHEA-PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTR- 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~- 555 (1135)
|.|..+.++....+|....+ .|.-+.++|... .+|.+++.+|.|.+||+....+... ...|..+...++|+|....
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 99999999988888864434 455788988764 6788999999999999988777664 4567888899999997654
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA 634 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~ 634 (1135)
|++.|. |..|.+||.+.......+...+ +...++|+++|.+|++|...|.|..||++. ..++.++..|.. .
T Consensus 224 ~vsVG~----Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--s 295 (673)
T KOG4378|consen 224 LVSVGY----DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--S 295 (673)
T ss_pred EEEecc----cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--c
Confidence 556665 8889999999887777766544 789999999999999999999999999986 557788877755 6
Q ss_pred cceEEEcCCC
Q 001159 635 SPRLRFNKEG 644 (1135)
Q Consensus 635 v~~~~~~~~~ 644 (1135)
|++++|-+..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999998865
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=174.52 Aligned_cols=249 Identities=17% Similarity=0.260 Sum_probs=194.5
Q ss_pred ccCCCcceEEEEEcCCCC--eEEEEeCCCeEEEEEeCC-------------CCceeeeeEeecccCCEEEEEEecCCCeE
Q 001159 404 LNDAAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNP-------------TGELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~--~las~~~dg~i~iwd~~~-------------~~~~~~~~~l~~h~~~v~~v~~s~d~~~~ 468 (1135)
..+|.+.|+.+.-++-++ +.|+=+..|.|+||++.. ....++++++.+|.+.=..++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 456888899888888654 555557899999999853 1234566788899999999999994333
Q ss_pred EEEEEcCCCcEEEEEcCCCeee---eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCc
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~ 543 (1135)
.|+||.--+.|++|...+|.-. ..|.+|+..|-.++|+|..+ ..|++||.||+|+|||++.+.. -...+.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5889988899999999887643 35778999999999999987 6999999999999999998733 2344889999
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC---CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCC
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+.+.|+.+-.+|++|+. +|++.|||++. ++++..|+-|.. +|+++.|+|.. ..|+++|.|.+|.+||+.-
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999998888864 89999999985 678889999988 99999999865 5677788999999999863
Q ss_pred Cc----------------eEEEEeCCCCCCCcceEEEcCC-CCEEEEEECCCcEEEEE
Q 001159 620 MN----------------MLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 620 ~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd 660 (1135)
.. +.+.+-.|.+...+..+.|++. ..++++.+-|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 22 1122333444557888999984 34667666675 44553
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=182.15 Aligned_cols=286 Identities=12% Similarity=0.146 Sum_probs=217.1
Q ss_pred cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe-EEEEeCCCeEEEEEeCCCCc-eee
Q 001159 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM-LGVAFSKHIVHLYTYNPTGE-LRQ 445 (1135)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~-las~~~dg~i~iwd~~~~~~-~~~ 445 (1135)
...++|||+...+..... .-......+.++.|+....+ +|+.+.|..|++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~~-----------------~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEY-----------------VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCcccc-----------------ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 448999998765432210 00112234999999987752 33345678899997654311 111
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
...+.+. .-.|++...... ++++||..++|+|||++...+.+.+++|...|+++.++..+ .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 233444433344 89999999999999999888888899999999999998765 89999999999999
Q ss_pred EeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC-CEE
Q 001159 526 WLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 603 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l 603 (1135)
..+.++.....+.... ..|.-+.|++..+.+++... .+|.|.+||.....++..+...+..+...|+|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 9999888877777664 46668999999888775543 389999999998888877765555588899999976 456
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCC
Q 001159 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
++.|.|..|.+||....+....+... .+...++|+++|.+|+.|+..|.|..||++..+..+..+..|...+.+++
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 77899999999999988877777653 26789999999999999999999999999998888888888887766543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=206.45 Aligned_cols=263 Identities=12% Similarity=0.151 Sum_probs=208.2
Q ss_pred eeEEeecCCCCeeEEEEecCCCe---EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQT---ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~---lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+.+..+......+.++|.+.|.. ++|.|..||.|.+||...- +.... .. .......|.+.|..+
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~----------~~-~la~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANAS----------EE-VLATKSKHTGPVLGL 122 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcc----------hH-HHhhhcccCCceeee
Confidence 46667777789999999998886 6899999999999998752 10000 00 111256799999999
Q ss_pred EEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 415 VWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
.|++... +||+|+.||.|.|||+...+...... -..-.+.|.+++|+..-++ .|++++.+|.+.|||++..+.+-.+
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccc
Confidence 9999655 99999999999999998754332111 1124567999999988776 7999999999999999999888777
Q ss_pred cCCCC--CeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCC
Q 001159 494 EGHEA--PVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGE 566 (1135)
Q Consensus 494 ~~h~~--~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~ 566 (1135)
..|.+ .+..++|||+.. ..+++++.|. .|.+||++.... ..++..|...|.++.|++.+ .+|++++. |
T Consensus 201 s~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D 275 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----D 275 (1049)
T ss_pred ccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----C
Confidence 66654 477899999876 5666666554 499999987654 45678999999999999977 67777764 8
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCCc
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+.|.+|+.++++.+..+....+ .+..+.|.|... .+++++-||.|.|+.+....
T Consensus 276 ~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8999999999999999988555 899999999876 67778999999999987654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=180.26 Aligned_cols=264 Identities=11% Similarity=0.133 Sum_probs=190.7
Q ss_pred CCeeEEEEecC-------CCeEEEEEeccceEEEEEcCCccccccCCceeecccc---cccchhhhhccCCCcceEEEEE
Q 001159 347 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA---ASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 347 ~~V~~v~~sp~-------g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
....|++|... |+ ++|.|+.|..|.|||+.-...+.- .+.+-.... .+.......-.+|+..|.+++|
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 34456666432 44 899999999999999864322210 000000000 0000012224579999999999
Q ss_pred cCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-eeec
Q 001159 417 GPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFE 494 (1135)
Q Consensus 417 spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~ 494 (1135)
+.+ ...||+||.|.+|++||+.++++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..++
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE
Confidence 985 4588999999999999999998765 67789999999999998776 8999999999999999853222 2232
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcCCCCEEE-EEecCCCCCCeEEEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEW 572 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~~~~i~~w 572 (1135)
..+.|-.++|.|... ..++++..||+++-+|++.. +++..+..|...|.++++++.-..++ +++ .++.|.+|
T Consensus 328 -~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw 401 (463)
T KOG0270|consen 328 -FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLW 401 (463)
T ss_pred -eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEE
Confidence 567899999998765 68888899999999999987 67789999999999999999776655 444 48899999
Q ss_pred ECCCCeE--EEEeecccCCceeEEEecCCCCE-EEEEeCCCeEEEEECCCCceE
Q 001159 573 NESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 573 d~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
++..-.. +..-.-.-+ ...|.++.|+-.+ ++.||..+.+++||+.+...+
T Consensus 402 ~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9864332 221111112 3566777777654 555778888999999876544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=173.22 Aligned_cols=234 Identities=15% Similarity=0.239 Sum_probs=185.8
Q ss_pred hccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
.+.||.++|..++|+| +...||+||.|.+|.||.+..+.. ......|.+|...|..++|.|.... .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 677899999999999999987643 2345578999999999999998877 789999999
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC-cEEEEEEcCCCCEE
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l 556 (1135)
+|.+||+.+|+.+.++. |.+.|+++.|+. ||.++++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 999999999976 559999999999999999999988887766655 555667888888 6
Q ss_pred EEEecCCCCCCeEEEEECCCCeE---EEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCce-EEEEeCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1135)
++.|.++-.+.++-+||...-+. ...+.... .|.--.|++|.+.++.+| .|+.||.|.+....+ +..+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 76666777799999999875443 33333333 566677889988887655 899999999987553 333322222
Q ss_pred CCCcceEEEcCC
Q 001159 632 LPASPRLRFNKE 643 (1135)
Q Consensus 632 ~~~v~~~~~~~~ 643 (1135)
..+=..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 223456666664
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-17 Score=167.46 Aligned_cols=490 Identities=11% Similarity=0.129 Sum_probs=295.1
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEE-EEEEec-----CCCeEEEEEEcCCCcE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAH-----PNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~-~v~~s~-----d~~~~~l~s~~~d~~i 479 (1135)
.|...|.|+.|+.+...+.+++.+..+.-||+.+... ... .+ ....|. .+-.-+ .++.-.|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4777788999999888777776666666666654322 111 11 111111 111111 1111268888899999
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.+-+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.- ++-...++......|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999998865 77999999999999963 343444555567799999999999988877
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
. .+.+.+=.+.....+...+.|.+ -|.++.|++..+.+++||+|-..++||.. |..+..-..|.. +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeee
Confidence 4 45677777777777778889888 89999999999999999999999999976 455544444544 899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|+ +.++.++.+ ++|+=..
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~p---------------------------------------------------------- 254 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSSP---------------------------------------------------------- 254 (737)
T ss_pred eccc-cceeeeeee-eeeecCC----------------------------------------------------------
Confidence 9999 666666543 4441110
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKL 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~i 799 (1135)
..+.| ..++||+||.+++.+++.|.+.+
T Consensus 255 ---------------------------------------------------~~GSi-fnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 255 ---------------------------------------------------RVGSI-FNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ---------------------------------------------------Cccce-EEEEEcCCCceeeccccCceEEE
Confidence 22344 88999999999999999887765
Q ss_pred EEeccccC-CCCCc--ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEE
Q 001159 800 WKWQRTER-NPSGK--ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT 876 (1135)
Q Consensus 800 w~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~ 876 (1135)
--.-.... ....+ ......+.+-|+.++..-..++ +..+...++ .-.+|+++....|++|.-.......
T Consensus 283 A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~------p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpi 354 (737)
T KOG1524|consen 283 AYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEF------PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPI 354 (737)
T ss_pred eeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhC------ccceeeeee--ceeEEEEEeccEEEEEecCCccCcE
Confidence 32221111 00111 1111234455555554322111 444544443 4456777777889999877766555
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe--cCcCCC-e--EEEEEcCCCCeEEEE--cCCCcE
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNR-I--TGLAFSPTLNALVSS--GADAQL 949 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~-i--~~l~~s~d~~~l~s~--~~D~~i 949 (1135)
.+.+....+.-+.-+. ..++ ..+.-++.+|..+ |+..... ++..-. . ..+... ...|+.- .....+
T Consensus 355 iidgre~tr~lieq~e--k~fl--i~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvl 427 (737)
T KOG1524|consen 355 IIDGREDTRNLIEQGE--KYFL--ILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVL 427 (737)
T ss_pred EEeccccchhHhhhhh--hheE--EecCcEEEEEEec-CceecCCCCCCcccccccceeeecc--cceEEeecCCCCeeE
Confidence 5555444332222221 1222 2233456666654 3322221 111110 0 122222 2234432 233457
Q ss_pred EEEeC-CCCceeceeeeecCCCC-CCCCCCceEEEEC----CCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCE
Q 001159 950 CMWSI-DKWEKLKSRFIQAPAGR-QSPLVGETKVQFH----NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPI 1021 (1135)
Q Consensus 950 ~iwd~-~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s----~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i 1021 (1135)
.++|. .+++.+. .|+ ......+..++.. ++.+.++. -.++.+.|=.+ +...-..+... ..-|
T Consensus 428 hlFd~istgk~qg-------Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmV 497 (737)
T KOG1524|consen 428 HLFDLISTGKRQG-------DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMV 497 (737)
T ss_pred EeccCCCCCcccC-------CccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhh
Confidence 78888 6655321 111 1111233333332 23334443 34455555444 22211111111 4567
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 1022 SSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 1022 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
..++|+...+ +++|-.|+++.||-..+-
T Consensus 498 htLawndttN-iLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 498 HTLAWNDTTN-ILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred hhhhhccccc-eeeeeccceEEEEEcCCc
Confidence 7889976555 677889999999998864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=173.54 Aligned_cols=252 Identities=15% Similarity=0.219 Sum_probs=189.8
Q ss_pred ceEEEEEcC-----CCCeEEEE---eCCCeEEEEEe-CCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 410 SVNRCVWGP-----DGLMLGVA---FSKHIVHLYTY-NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 410 ~V~~v~~sp-----d~~~las~---~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
.|+.++|.. +.++||+. +.-|...+.-+ ++|+.-.....+.||+++|..++|+|-+.. .|||||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455566533 45566653 22223333322 233333334456799999999999998776 899999999999
Q ss_pred EEEcCCC-------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCC
Q 001159 481 VWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 481 iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 553 (1135)
||.+..+ +.+..+.+|...|.-++|||... +.|++++.|.+|.+|++.+++....+. |...|+++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 9998754 34567889999999999999865 799999999999999999999999888 99999999999999
Q ss_pred CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCceEEEEeCC
Q 001159 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+|++.+. |..|++||.++++.+..-.+|.+..-..+.|-.+|. +++.+ .+..+-+||..+.+.-..+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999874 888999999999999988888875556677888888 55543 6788999998875433222221
Q ss_pred CCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhh
Q 001159 630 GGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 669 (1135)
.....|.---|.+|.+++..++ .|+.||.|.+.+....+.
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVH 301 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeE
Confidence 2223455556788888776655 599999999987743333
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-16 Score=174.03 Aligned_cols=243 Identities=11% Similarity=0.155 Sum_probs=169.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCC----
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG---- 420 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~---- 420 (1135)
+...-.++.|+|.| ++|-|+ ...|.+-|..+-+.+.. +.-|...|+.|.|.|-.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 33457789999999 677776 35788889887776654 56689999999998731
Q ss_pred --------CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec---CCCeEEEEEEcCCCcEEEEEcCCCee
Q 001159 421 --------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 421 --------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
-+||++...|.|.+||...+..+. .+..|..+|..++|-+ +.+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 267888889999999999876554 6778899999999976 3333 566666788999999999999
Q ss_pred eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC------ceeEecCC-CC--------------------
Q 001159 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAP-GN-------------------- 542 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~-~~-------------------- 542 (1135)
............|+.+.|-...+ +..-+..|.+.+-+.-... ....+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh-~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRH-FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcce-EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 88877666667778888865534 4444445555555432111 11111111 00
Q ss_pred -----cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC--CEEEEEeCCCeEEEE
Q 001159 543 -----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 543 -----~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iw 615 (1135)
....++|+|.-+.++.... ...+.++|++-...+....-..+ .+.-+.+-|++ ..+++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0113466776555444443 56799999998888777766555 55667777765 568889999999999
Q ss_pred ECCC
Q 001159 616 DMDN 619 (1135)
Q Consensus 616 d~~~ 619 (1135)
-.+.
T Consensus 302 vrk~ 305 (1062)
T KOG1912|consen 302 VRKE 305 (1062)
T ss_pred Eeec
Confidence 7664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=162.32 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=167.4
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC---ceEEEEeecCCCEEEEE
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE---SAACIALSKNDSYVMSA 859 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---~i~~l~~s~dg~~la~~ 859 (1135)
|+..++++.+.+.-|++||..+++....-+ ...| .. ...+++|+|||..|..|
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~-----------------------~ydh-~de~taAhsL~Fs~DGeqlfaG 176 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR-----------------------AYDH-QDEYTAAHSLQFSPDGEQLFAG 176 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh-----------------------hhhh-HHhhhhheeEEecCCCCeEeec
Confidence 566777888888888888765443321111 1112 22 33489999999999999
Q ss_pred eCCeEEEEECC-CccE---EEEE----eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEE
Q 001159 860 SGGKVSLFNMM-TFKV---MTMF----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 931 (1135)
Q Consensus 860 ~dg~i~vwd~~-~~~~---~~~~----~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l 931 (1135)
....|+|||+. .|.- ..++ .+..+-|.|++|+|.+.+.+|.|+...++-||.-..+.++..+-+|.+.|+.|
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 99999999994 3321 1222 12356789999999888899999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEcC-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEec-C-Cce
Q 001159 932 AFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-K-LEC 1007 (1135)
Q Consensus 932 ~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~-~~~ 1007 (1135)
.|.+||+.|++|+. |..|..||+..... .+-.+.+|...+..-......|+|++|+++ .+|.|++||+ . ++.
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 99999999999984 67799999987543 233334443211222234446999999996 8999999999 3 444
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
+..+. .|+..+..+++.|--.++++++..
T Consensus 333 ~sv~~---~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTG---NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccc---cccccccceecCcccceeeeccCc
Confidence 44443 347899999999998888887765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=165.33 Aligned_cols=299 Identities=18% Similarity=0.233 Sum_probs=211.8
Q ss_pred cceEEEEEEecCCc-ceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 773 SKVVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
.++ .++.|.+++. .+++++.|..|++|.+........+.. ......+. .| ...|+++.|+|
T Consensus 14 ~pv-~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls--~H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 14 EPV-YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLS--RH-TRAVNVVRFSP 75 (434)
T ss_pred Cce-EEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeeccc--CC-cceeEEEEEcC
Confidence 445 8899988877 899999999999998876432111100 01111222 27 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEECC--------C--------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 852 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
+|..+|+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6899999765 2 345566788999999999999 899999999999999999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceee---eecCCCCCC------------CCCCce
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQS------------PLVGET 979 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 979 (1135)
|+....+..|...|..++|.|-++++++-+.|...+.+.+.......... .....++.. ...--.
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999977777766544322111 000001000 001224
Q ss_pred EEEECCCCcEEEEE-----ecCeE-----EEEec-C-CceeeccCCCCCCCCCEEEEEEee------------------C
Q 001159 980 KVQFHNDQTHLLVV-----HESQI-----SVYDS-K-LECSRSWSPKDALPAPISSAIYSC------------------D 1029 (1135)
Q Consensus 980 ~~~~s~dg~~l~~~-----~d~~v-----~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~------------------d 1029 (1135)
.++|+|||.++++. .++.+ ++|+- . .+....+... ..+...+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEecccccccccccccc
Confidence 67899999999982 13333 45554 1 1112222221 45666666665 1
Q ss_pred CCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1030 GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1030 ~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+-.+|.+ ....|+|||.++..+++....-++. ..+-++|++ ||..|+..+.||...+-.+...+
T Consensus 312 rlvfaiA-t~~svyvydtq~~~P~~~v~nihy~---------~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYS---------AITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEe-ecceEEEeccccccceEEEeeeeee---------eecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 1234555 4568999999998888877644332 233678888 88999999999988777666555
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-17 Score=169.45 Aligned_cols=270 Identities=15% Similarity=0.204 Sum_probs=190.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE--cCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--GPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--spd~~~ 422 (1135)
|..-|.|+.|+.+.. ++.+++ |..+.+|.-.+.......... ...++.. -| +....- -.....
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p-------~df~pt~---~h---~~~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLP-------DDFVPTD---MH---LGGRSSGGGKGSDT 77 (737)
T ss_pred cceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCC-------cccCCcc---cc---ccccccCCCCCcce
Confidence 566788999999987 565544 666666654333222110000 0000000 01 000000 112357
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
++.++.||.+.|.+-.. + ......+|.+.|.+-.|+|||. -|+|+|+||.|++|. ++|-...++.-...+|.|
T Consensus 78 ~~i~s~DGkf~il~k~~-r---VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-R---VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEEcCCceEEEecccc-h---hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 88899999999887554 2 2225678999999999999999 799999999999999 888776677667789999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|.|+.+ +.+++.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-..++||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99999875 4555544 45555566666778888999999999999999999999985 8889999965 666666
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
-..|.- +|++++|.|+ ..++.++. .++|+=. ...+.|..++|++||..++.|+..|.+.+=.
T Consensus 223 S~~~ey-~ITSva~npd-~~~~v~S~-nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 223 SAAEEY-AITSVAFNPE-KDYLLWSY-NTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CChhcc-ceeeeeeccc-cceeeeee-eeeeecC-------------CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 566655 8999999999 55665553 3444111 1234789999999999999999998876643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=169.79 Aligned_cols=247 Identities=13% Similarity=0.171 Sum_probs=164.4
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||.+.|+|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||.+.|.++.|-|......++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 47899999999999999999999999999999999876655543 3589999999999997555589999999999999
Q ss_pred EcCC----------CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeE---------ecCCCC
Q 001159 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVD---------YDAPGN 542 (1135)
Q Consensus 483 d~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~---------~~~~~~ 542 (1135)
|+.. ....+.+..|...|..++..|... +.+.+++.||+|+-+|++.... ... +...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9974 234455677999999999877654 7999999999999999986321 111 111112
Q ss_pred cEEEEEEcCCCCE-EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 543 WCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 543 ~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
...++..+|...+ |++|+. +...++||.+. .+..+.... . ..+.|.. .++.|+-|-....+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr--~lks~~s~~---~--~~~~pp~-------~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRR--VLKSFRSDG---T--MNTCPPK-------DCRCVRYFSPGHLK 263 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhh--hccCCCCCc---c--ccCCCCc-------ccchhheecCcccc
Confidence 5678899997654 556654 77789999632 111121110 0 0111110 11122222111110
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
...-...+ -...++-++|+|+|.-|++.-....|.++|+..++.....+
T Consensus 264 n~~gn~~~-~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 264 NSQGNLDR-YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred Cccccccc-ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00000000 00124668899999877777777799999998775444433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-17 Score=158.52 Aligned_cols=377 Identities=14% Similarity=0.162 Sum_probs=241.0
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE-EeCCCeEEEEECCCCceEEE
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 625 (1135)
.+|||+|++++++. +-.+.+-|..+-+..+.|..-. .|.-+.|..|.-++++ ...|+.|.+|++...+--..
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 57999999999997 4578888988877766666543 4677889999888777 56888999999998777777
Q ss_pred EeCCCCCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccccc
Q 001159 626 VDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 704 (1135)
+... ...+.++.|+|||+.+. +...+-.|.+|.+.+..-..- .|
T Consensus 87 Ideg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~------------------------------ 131 (447)
T KOG4497|consen 87 IDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PH------------------------------ 131 (447)
T ss_pred eccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cc------------------------------
Confidence 7644 45789999999996555 555588999999877621100 00
Q ss_pred ccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC
Q 001159 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d 784 (1135)
....+ ..++|+||
T Consensus 132 ------------------------------------------------------------------pK~~~-kg~~f~~d 144 (447)
T KOG4497|consen 132 ------------------------------------------------------------------PKTNV-KGYAFHPD 144 (447)
T ss_pred ------------------------------------------------------------------cccCc-eeEEECCC
Confidence 01122 78899999
Q ss_pred CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe---C
Q 001159 785 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 861 (1135)
Q Consensus 785 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~---d 861 (1135)
|++.+..+.-.....+.+. .-+-|.. +.. +.. . .-..+.+.|+|||..+|+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~l-----l~~-f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWIL-----LKE-FKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHHH-----HHh-cCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9977666542111111100 0001111 110 110 1 45567789999999998754 2
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC--------------
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 927 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------- 927 (1135)
-.|..|.. .-.+..++|+| .+++||+|+.|+++|+.+--+.+...++- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 33333322 23578899999 89999999999999998876666554432 2111
Q ss_pred ------eEEEEEcCCCCeEEEEcCCCcEEEEeCCCC--c----eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec
Q 001159 928 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKW--E----KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 995 (1135)
Q Consensus 928 ------i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~--~----~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 995 (1135)
..++.|.|.. -...+|..+.- + ..+...++.+.....+.-++.-++||+|..++++-.|
T Consensus 268 ~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 1234444332 12233332210 0 0000111111122223356788999999999999544
Q ss_pred ---CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCC
Q 001159 996 ---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA 1071 (1135)
Q Consensus 996 ---~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
+.+-+||+ +.+....+.. ..+|.++.|.|....|+.......+++|.......++.-. .+.
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-----------~GF 403 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-----------KGF 403 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-----------CCc
Confidence 67899999 4444333332 5689999999999888888888889999988654443211 124
Q ss_pred ccEEEEecCCCCCEEEEEecCCc
Q 001159 1072 HPLVIAPHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1072 ~~~~~~~~~~~~~~l~sg~~dg~ 1094 (1135)
....+.|.- +|..++-.+.|..
T Consensus 404 ~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecC-CCcEEEEEcCCce
Confidence 455677776 5677887788764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-16 Score=146.60 Aligned_cols=286 Identities=12% Similarity=0.140 Sum_probs=195.3
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+-+++|.+++|+++..+|.|.+..+..-.... ....|+......+. | ++++..++|. ..+|
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s-------------a~~~gk~~iv~eqa--h-dgpiy~~~f~--d~~L 75 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS-------------AEPPGKLKIVPEQA--H-DGPIYYLAFH--DDFL 75 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccc-------------cCCCCCcceeeccc--c-CCCeeeeeee--hhhe
Confidence 566789999999999999999999876421100 01112221111233 8 9999999998 5688
Q ss_pred EEEeCCeEEEEECCCccE------EEEE--eC-----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC
Q 001159 857 MSASGGKVSLFNMMTFKV------MTMF--MS-----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 857 a~~~dg~i~vwd~~~~~~------~~~~--~~-----h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
++++||.|+=|....... +-.. .- ...+|++|-..|..+. +++++.|+.++-||+++|+...+++|
T Consensus 76 ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 76 LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcC
Confidence 889999999987653221 1111 11 2356899999995554 44566899999999999999999999
Q ss_pred cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 924 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 924 h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
|++.|-+++--.....+.||+.||++++||.++++...............+...-.-.+..-+..+|+.+....+.+|.+
T Consensus 155 HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 155 HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHL 234 (325)
T ss_pred CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEec
Confidence 99999999984455568899999999999999988654332222111111111223356677788999999999999999
Q ss_pred -CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCC
Q 001159 1004 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1004 -~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1135)
..++...+.. .+++..+.|..| .+++++..++|.-|.+. |.+...+.... +.-+..++.-+|
T Consensus 235 rsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s--------~~c~s~s~~~~p-- 297 (325)
T KOG0649|consen 235 RSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVES--------TACYSASWQTSP-- 297 (325)
T ss_pred cCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCc--------cceeeecccCCc--
Confidence 6666666554 567888888665 56777788899999987 55555544331 112222333344
Q ss_pred CCEEEEEecCCcEEEE
Q 001159 1083 PNQIALGMSDGAVHVV 1098 (1135)
Q Consensus 1083 ~~~l~sg~~dg~v~~W 1098 (1135)
-++|-.++-.+.+.++
T Consensus 298 ~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEEecccceeeeee
Confidence 2566667777777765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=158.31 Aligned_cols=308 Identities=14% Similarity=0.162 Sum_probs=193.3
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
...++.|.. .++++.|..++ +|++|..-|.|.+|++.+......+..+.. ..|+.+..-|+ ..+.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEEE
Confidence 445666766 89999998876 599999999999999999988888875443 36788888886 567888999999999
Q ss_pred EcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccc
Q 001159 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1135)
Q Consensus 660 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
++.-+ .. ...|...+ +.+ .|-.+ ++.++++.... ....++..
T Consensus 83 ~ia~s-~~---i~i~Si~~-----nsl-----gFCrf----------Sl~~~~k~~eq------------ll~yp~rg-- 124 (323)
T KOG0322|consen 83 TIAYS-AF---ISIHSIVV-----NSL-----GFCRF----------SLVKKPKNSEQ------------LLEYPSRG-- 124 (323)
T ss_pred EccCc-ce---EEEeeeec-----ccc-----ccccc----------eeccCCCcchh------------heecCCcc--
Confidence 98764 11 11111111 100 11100 01111100000 00000000
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec-CCc--ceeEecccceeeeEEeccccCCCCCccccc
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-dg~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
. ..+.+-|.. ...+.....-+.....+.+ .+..+.. ++. .+++|-++|.+.+||+..+....
T Consensus 125 ---s-de~h~~D~g---~~tqv~i~dd~~~~Klgsv-mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~------- 189 (323)
T KOG0322|consen 125 ---S-DETHKQDGG---DTTQVQIADDSERSKLGSV-MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII------- 189 (323)
T ss_pred ---c-chhhhhccC---ccceeEccCchhccccCce-eeeeccccccceEEEEEeccCCeEEEEEccCCceee-------
Confidence 0 001111111 1111111111112233333 4444222 233 35667779999999987642111
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC--ccE--EEEEeCCCCCeEEEEEe
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFH 891 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~--~~~--~~~~~~h~~~v~~l~~s 891 (1135)
+......+...... | ..++.++.|.+.-..=++|+ +..+..|++.. +.+ .....-....|..+.+-
T Consensus 190 ------~~~~~~kv~~~~as--h-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR 260 (323)
T KOG0322|consen 190 ------QLPQSSKVESPNAS--H-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR 260 (323)
T ss_pred ------ccccccccccchhh--c-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc
Confidence 11111111111222 7 89999999988666666666 77888888763 332 22233345578899999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 892 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 892 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
| |++++||+++|+.||+|+..+.+++..++.|.+.|.+++|+||...+|++|.|+.|.+|++
T Consensus 261 p-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 P-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9 9999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=178.64 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=192.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC-----CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|...|.+++|.|....|++|+.||.+.+|++. ....+.+..++.+|.++|.|+++.++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2345677889999999999999999999 8999999999
Q ss_pred EEEEEcCCC----------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC--CCcEEE
Q 001159 479 IKVWDVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTM 546 (1135)
Q Consensus 479 i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~ 546 (1135)
|+.|++... .....+.||.+.|+.+++++.. ..|++++.||+++.|+...... ..+... .+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999965411 2334678999999999999887 6799999999999998766554 223222 223445
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC------CceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
+.+......+..++. ..+.-.+.+...+..+..+..... ..+..+.+.|.+...+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 555433212222211 122233444444444444432211 24667888999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++.....|.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 522 ~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 KILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 99988887644 7999999999999999999999999998655
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-17 Score=159.84 Aligned_cols=276 Identities=12% Similarity=0.147 Sum_probs=196.9
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEEEEeCCCeEEEEEe
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las~~~dg~i~iwd~ 437 (1135)
..+|++-..|.|++||..+++.+.. ++++...++.++|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3678888899999999999887764 778899999999987 4678999999999999999
Q ss_pred CCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEc----CCCcEEEEEcCCCee-eeee-cCCCCCeeEEEeeccCC
Q 001159 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 438 ~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~i~~~~~~~ 510 (1135)
+........ ....|. .+-.+++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|.+.|++++|+|...
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987655433 344555 4566777665565 677765 467899999998776 5544 56999999999999866
Q ss_pred ccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 511 IQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
++|++||.||-|.+||+..... +.....+...|.++.|..++ +.|.+-+. .....+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCc
Confidence 8999999999999999976533 22334466789999999887 34555443 667999999988765544332
Q ss_pred cCC---------ceeEEE-ecC-CCCEEEEEeC-CCeEEEEECC---CC---ceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 587 RKR---------SLGVVQ-FDT-TRNRFLAAGD-EFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 587 ~~~---------~v~~i~-~s~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
.-. .-+-+. .+| +...++.++. -+...++-+. ++ +.+..+.++ +...|.++.|...+.++.
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLY 332 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceee
Confidence 100 000111 123 3345555443 5555555443 22 333444432 334688999998999999
Q ss_pred EEECCCcEEEEEcCC
Q 001159 649 VTTSDNGIKILANSD 663 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~ 663 (1135)
+|+.||.+.+|....
T Consensus 333 TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVED 347 (376)
T ss_pred ccCCCceEEEEecCC
Confidence 999999999998643
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=151.38 Aligned_cols=291 Identities=15% Similarity=0.269 Sum_probs=209.7
Q ss_pred eeEEeecCCCCeeEEEEe--cCCCeEEEEEec----cceEEEEEcC--CccccccCCceeecccccccchhhhhccCCCc
Q 001159 338 TVVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAI 409 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~s--p~g~~lla~g~~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 409 (1135)
+.+..+...-.+.++.|| |+.+..||.|+. .+.|.|-.+. +++.+...+ ..|.-
T Consensus 36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~Y 97 (364)
T KOG0290|consen 36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPY 97 (364)
T ss_pred ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCC
Confidence 345566666789999999 666677888873 3455555443 444433221 25889
Q ss_pred ceEEEEEcCCCC-----eEEEEeCCCeEEEEEeCCCC-ceeeeeEe-----ecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 410 SVNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLEI-----DAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 410 ~V~~v~~spd~~-----~las~~~dg~i~iwd~~~~~-~~~~~~~l-----~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+++.+.|.|+.+ +||+++ ..+++|.+...+ .+.....+ ..+.+++++..|+.-..+ +|.+.+-|-+
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTT 174 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTT 174 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCe
Confidence 999999999874 666653 359999998522 22211122 245678999999986655 8999999999
Q ss_pred EEEEEcCCCee---eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCC--CCcEEEEEEcCC
Q 001159 479 IKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSAD 552 (1135)
Q Consensus 479 i~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~~~~s~~ 552 (1135)
..|||+++|.. ...+-.|...|..++|... ..+.+++.+.||.+|+||++..+.-. .+... ..+...++|++.
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999998733 4567789999999999874 34799999999999999999866533 33332 347778888875
Q ss_pred C-CEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCce------E
Q 001159 553 G-TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------L 623 (1135)
Q Consensus 553 ~-~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~ 623 (1135)
. +++++... ....|.+.|++. ...+..+++|.. .|+.++|.|.. ..|+++|.|..+.+||+...-. +
T Consensus 254 DpnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 254 DPNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CchHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 4 56666554 255699999985 567888999988 99999999964 6788999999999999986322 2
Q ss_pred EEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEE
Q 001159 624 TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 658 (1135)
..+. ....|+.+.|++ .+..++.+... .+.|
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 2222 223799999997 66788777654 4444
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=155.87 Aligned_cols=288 Identities=15% Similarity=0.194 Sum_probs=200.3
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhcc-CCCcceEEEEEc
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s 417 (1135)
...+. |.+.|+++.|-.+++ |.+|...|.|++|++++...+.. +. .|...|+.+.--
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~ 65 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSI 65 (323)
T ss_pred eeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeec
Confidence 34444 888999999999996 67899999999999998765432 23 367789999988
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCC-----CeE--EEEEEcCCC-cEEEEEcCCCee
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN-----KQL--CIVTCGDDK-MIKVWDVVAGRK 489 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~-----~~~--~l~s~~~d~-~i~iwd~~~~~~ 489 (1135)
|+ ..|.+-+.|+.+.+|++..+..+. -|.-.++++-|++.. +.. .++.-++.. .+++=|......
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 88 567788899999999998754332 355556667666531 100 111111110 012222211112
Q ss_pred eeee----cCCCCCeeEEEeeccCC-ccEEEEEEcCCeEEEEeCcCCCcee----------EecCCCCcEEEEEEcCCCC
Q 001159 490 QYTF----EGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 490 ~~~~----~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~s~~~~ 554 (1135)
+... .+..+.+.+..+..... .-++++|-.+|.+.+||+.++..+. ....|..+|.++.|.+...
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 2211 12345666666432221 2356778899999999999874433 3345677899999987666
Q ss_pred EEEEEecCCCCCCeEEEEECCC--CeE-EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESE--GAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.=++++. +..+..|+++. +.+ ++....-....|..+.+-||++.++++|.|+.||+|..++.+++..++.|..
T Consensus 219 rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 219 RGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred CCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence 6566654 55677887763 332 2222222333688899999999999999999999999999999999998864
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.|++++|+|+..++|.++.|+.|.+|++
T Consensus 295 --gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 --GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999986
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-16 Score=145.08 Aligned_cols=281 Identities=19% Similarity=0.273 Sum_probs=193.4
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.|.+-++||.++ +|++|+.+|.|.+..+.+-..-..+ ...+.++ ....+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~-------~~gk~~i--v~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE-------PPGKLKI--VPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC-------CCCCcce--eeccccCCCeeeeeee--hhheeecc
Confidence 577778999998 7889999999999998642111000 0001111 1146899999999998 45677765
Q ss_pred CCCeEEEEEeCCCCc-e--eeeeE--eeccc-----CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC
Q 001159 428 SKHIVHLYTYNPTGE-L--RQHLE--IDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~-~--~~~~~--l~~h~-----~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1135)
. |.|+-|....... . +...+ ...|. -.|++|...|... -+++++.|+.++-||+++|+..++++||+
T Consensus 80 d-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 D-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred C-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 4 9999998765332 1 11000 11222 2588999998877 46666679999999999999999999999
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC----------CCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.|.++.--... ..+++|+.||++|+||.++.+....+... +.+|-+++. +..+|++|+ ..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 999999863332 57999999999999999999887754322 235666654 567898886 45
Q ss_pred eEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC-CE
Q 001159 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 646 (1135)
.+.+|+++..+....|.-.. .+..+.|.. +.+++++..+.|.-|.+. |..........+ ..++..++... +.
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 69999999988888776543 466677764 568888888889999876 444444443322 34444554333 34
Q ss_pred EEEEECCCcEEEE
Q 001159 647 LAVTTSDNGIKIL 659 (1135)
Q Consensus 647 l~~~~~dg~i~iw 659 (1135)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455566666665
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=158.19 Aligned_cols=292 Identities=12% Similarity=0.140 Sum_probs=211.0
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccccc-CCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
+.|.+-|+++.||.+++ +||+|+.|..+++|+++..-.... +++.+ .-..|...|.|++|...++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccCCe
Confidence 34888999999999997 799999999999999874321111 11110 1234668999999999999
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeeccc---CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-ee--eeecC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEG 495 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~---~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~~ 495 (1135)
.+.+|+.+++|...|+.+.+.+. . ..|. +.|..+..+|-.. .|++.+.++.|.+||.+... .. ..+..
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~---V-~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIY---V-ANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred eEecCCCcceeEeeecccceeee---e-ecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999999999999976553 2 2344 4899999999977 89999999999999988654 22 22223
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-E------ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-D------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
......++.|+|... .+|++.+..+-+-+||.+...... . +......-.++.|+|+|+.+++.-. ...
T Consensus 193 ~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~ 267 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKC 267 (609)
T ss_pred CCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCC
Confidence 445677888999765 788999999999999998655432 1 1111223356789999999987643 333
Q ss_pred EEEEECCCCeE-EEEeeccc-----CCceeEEEecCCCCEEEEEeCCCeEEEEECCCC----------------------
Q 001159 569 LVEWNESEGAI-KRTYSGFR-----KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM---------------------- 620 (1135)
Q Consensus 569 i~~wd~~~~~~-~~~~~~~~-----~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------- 620 (1135)
-.+||+.+..+ +..+.... ...+.+++|..|. .+++|+.+-.|++|.+...
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i 346 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI 346 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhee
Confidence 45677766443 22332111 1246667787654 4899999999999987531
Q ss_pred -ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 621 -NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 621 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+.+..+.+|.. .++.+.|+|...+|++.+-.+.++||...
T Consensus 347 ~~~~~VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 347 EKELTVLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cceeEEEecccc--cccceeecCCcceEeccchhhheeccccc
Confidence 12345566544 68999999999999999999999999753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-17 Score=160.75 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=198.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe--cCCC-CcEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPG-NWCT 545 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 545 (1135)
.++++...|.|++||..+++.+..|+++...++.+.|........+.+|+.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688888899999999999999999999999999999987555588999999999999999987765543 3333 3566
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCc--
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-- 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1135)
+++..-.++.++++..-...+-.|.+||++..+. ++.+...+...|+++.|+|.. +.|++|+.||.|.++|++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667778887765555577899999998766 666654444499999999965 788999999999999997643
Q ss_pred --eEEEEeCCCCCCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCC
Q 001159 622 --MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 622 --~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 698 (1135)
++.++.. ...|.++.|..++ +.|.+-+..++..+|+++.+.. ...++....... -
T Consensus 202 DaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~-----------------d- 259 (376)
T KOG1188|consen 202 DALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSAD-----------------D- 259 (376)
T ss_pred hhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhh-----------------h-
Confidence 2233322 2358899998866 5688888999999999998842 222211100000 0
Q ss_pred ccccccccCCCCCCCCCCCCCccccccccCCCCcccc-ccccccccc-ccccccccCCcCCccceeEeecCCcccccceE
Q 001159 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD-VKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
.+..+ ...+..+.....+ +...+++.+ ++..++-+..................|..-|
T Consensus 260 --------~r~~~-----------~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV- 319 (376)
T KOG1188|consen 260 --------LRKED-----------NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV- 319 (376)
T ss_pred --------HHhhh-----------hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH-
Confidence 00000 0000001110111 122333332 5555555554333333333344443444444
Q ss_pred EEEEEecCCcceeEecccceeeeEEe
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
.++.|...+..+.+|+.||.+.+|..
T Consensus 320 R~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 320 RDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHhhhcccceeeccCCCceEEEEec
Confidence 88999999999999999999999974
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=173.80 Aligned_cols=268 Identities=13% Similarity=0.196 Sum_probs=194.2
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 341 ~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.++. |.+.|+.++|.|... .|++++.||.+.+|+++....-... ...+...+.+|.++|.|++++++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecCC
Confidence 3555 889999999999998 6889999999999999442111110 11122337899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCC-------ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
++.+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++|+.||+++.|+...... .+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cc
Confidence 9999999999999999665221 1122336779999999999999888 799999999999999766554 44
Q ss_pred ecCC--CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-------CCcEEEEEEcCCCCEEEEEecCC
Q 001159 493 FEGH--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 493 ~~~h--~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
|..- .+.-.++.+..... ...++...-+.--+++++.......+... ...+..+.+.|.+...+++..
T Consensus 433 f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-- 509 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-- 509 (577)
T ss_pred cCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc--
Confidence 4322 22334444432211 12222222233333344433333332221 125677888899988888864
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.|+++|..++.++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 510 --d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 --DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred --CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 88999999999999999999888 8999999999999999999999999999877766655544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=151.13 Aligned_cols=256 Identities=14% Similarity=0.227 Sum_probs=186.7
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecc-------ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.|.++|+.++-+|-.+++|++...+ ..+.||.+....... +...|+ ....+-..+-+.|.|+.|
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINCVEW 131 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceeeEEE
Confidence 3678999999999998899987542 257888876432211 111110 111112245668999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeee---EeecccCCEEEEEEec--CCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~---~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.|++..||+-. |..|.+|++..+..+.... .-.+|....++-+|+| |+. .+++.+ |+++..||+++.++..
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNN 207 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhc
Confidence 99999999875 7889999999876521110 1123566788899998 666 566655 8999999999888776
Q ss_pred eec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEE-EEecCCCCCCe
Q 001159 492 TFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESH 568 (1135)
Q Consensus 492 ~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~~~~ 568 (1135)
.+. .|...|..+.|+|+.. .+|++|+.||.|++||.+..+. +..+..|.++|.++.|+|.-..|+ +++. |..
T Consensus 208 sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~ 282 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSA 282 (370)
T ss_pred chhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Cce
Confidence 664 5888999999999865 7899999999999999987654 568899999999999999766555 5554 677
Q ss_pred EEEEECCC-----------------------------CeEEEEeecccCCceeEEEecCCCCE-EEEEeCCCeEEEEECC
Q 001159 569 LVEWNESE-----------------------------GAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 569 i~~wd~~~-----------------------------~~~~~~~~~~~~~~v~~i~~s~~~~~-l~~~~~dg~i~iwd~~ 618 (1135)
|.+|.... ...+.++..|.+ .|.+++|+.-..+ +++-+.||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 88885521 112346677777 8999999976665 4557899999886654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-15 Score=162.36 Aligned_cols=496 Identities=16% Similarity=0.179 Sum_probs=289.6
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCC----------CeEEEEEEcCCC
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDK 477 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~----------~~~~l~s~~~d~ 477 (1135)
...-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. .+++|+++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3346788999887 6677655 457888877755444 677899999999998732 345789999999
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCc--cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC-CCC
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGT 554 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 554 (1135)
.|.+||...+..+..+..|..++..++|.+..+. ..|+.-.....+.+|+.++++.............|+.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876543 4677778889999999999999988888777888888888 444
Q ss_pred EEEEEecCCCCCCeEEEEECC-------CCeEEEEeecccC-----------Cc-------------eeEEEecCCCCEE
Q 001159 555 RLFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRK-----------RS-------------LGVVQFDTTRNRF 603 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~-----------~~-------------v~~i~~s~~~~~l 603 (1135)
.+..-+. .|.+.+-+.- .|+..+.-..|.+ .. ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4443332 3444444321 1222222222111 00 0125678877666
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC--CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccC
Q 001159 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
+.......+.++|++-..++.......+ .+.-+.+-|+ ...|.+.-.||.+.+|--+.....++.-..+-..
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~---- 319 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSM---- 319 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcc----
Confidence 6666778899999999999988887655 3455666664 4578899999999999754331111111000000
Q ss_pred CCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccce
Q 001159 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~ 761 (1135)
|+ ..++
T Consensus 320 ---------------------------------------------------------------------dl-----~~Q~ 325 (1062)
T KOG1912|consen 320 ---------------------------------------------------------------------DL-----GEQV 325 (1062)
T ss_pred ---------------------------------------------------------------------cc-----ccce
Confidence 00 0000
Q ss_pred eEeecCCcccccceEEEEEEecC-CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 762 KALRLPDSIAASKVVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~~s~d-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
..+... .+-.+ ...+..|. ...+++.-++|...+|.+..+..+.++......-..-+|.......
T Consensus 326 ~~vr~m---~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------- 391 (1062)
T KOG1912|consen 326 HVVRPM---EEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------- 391 (1062)
T ss_pred EEEeec---hhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee----------
Confidence 000000 00000 11122222 2223333444555555554332222211100000000000000000
Q ss_pred CCceEEEEeecCCCEEEEEeCCeE--EEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee
Q 001159 841 EESAACIALSKNDSYVMSASGGKV--SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i--~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 918 (1135)
-....-+.+|.||. -+.|.+ ++--+.... .+.....+. +....-| ++|.|+..|+|.++|+.++...
T Consensus 392 v~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t--~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~ 460 (1062)
T KOG1912|consen 392 VGKTSLISLSDDGS----HSSGSTCVRMRPMPELT--KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVA 460 (1062)
T ss_pred hhhccccchhhcCC----CCCCceeeecccCcccc--eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhh
Confidence 00000111222220 001110 000000000 000101111 1112223 8999999999999999999999
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEc----------CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
+.+..|.+.|.++.|--... |++.+ --+.+.+-|+.+|-....+-++.... .+|..+..|.-|+
T Consensus 461 ~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~ 534 (1062)
T KOG1912|consen 461 ASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGR 534 (1062)
T ss_pred hhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCc
Confidence 99999999999999975544 44332 12347788888876443322222221 6899999999999
Q ss_pred EEEEE-ecCeEEEEec-CCceeeccCCCCCCCCC-EEEEEEe
Q 001159 989 HLLVV-HESQISVYDS-KLECSRSWSPKDALPAP-ISSAIYS 1027 (1135)
Q Consensus 989 ~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~-i~~~~~s 1027 (1135)
||++. .+.-+.+||+ ...+++.... .-+ |+.+.|+
T Consensus 535 yLai~Fr~~plEiwd~kt~~~lr~mS~----a~P~it~leWs 572 (1062)
T KOG1912|consen 535 YLAILFRREPLEIWDLKTLRMLRLMSL----ALPLITVLEWS 572 (1062)
T ss_pred eEEEEecccchHHHhhccchHHHHHhh----cCCcEEEEeec
Confidence 99994 7889999999 5444444322 334 8899998
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=182.92 Aligned_cols=279 Identities=16% Similarity=0.275 Sum_probs=216.6
Q ss_pred eecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 342 ~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
.+.|...|.|+.|...|. ++++|+.|..|+||.++++.++.+ ..||.+.|+.++.+.+.-
T Consensus 186 LlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhh
Confidence 344888999999999997 688999999999999999988876 789999999999999999
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee---ec-CCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE-GHE 497 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~-~h~ 497 (1135)
++|+++.|..|++|.+..+..+. .+.+|++.|++++|+|- .+.+.||++++||.+-.-.+.. +. ...
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccc
Confidence 99999999999999999997766 78899999999999985 4678899999999871111111 11 123
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC-EEEEEecCCCCCCeEEEEECCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
..+.++.|.. ++..++|++.|+.-..|.+..... +...+.-+.++.+.. +.+++- .+..+++|++.+
T Consensus 317 ~~~~s~~~~~--~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 317 DLVDSILFEN--NGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYT 384 (1113)
T ss_pred cceeeeeccc--cccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeeccc
Confidence 4555666543 457899999999988886543221 111222222333333 222332 266789999999
Q ss_pred CeEEEEeecccCCceeEEEecCCCCEEE-EEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
|.+.+.+.+|.+ .+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+...+|++||..++...+-|.
T Consensus 385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCc
Confidence 999999999988 899999999776554 5899999999999999888777633 235778899999999999988999
Q ss_pred EEEEEcCCC
Q 001159 656 IKILANSDG 664 (1135)
Q Consensus 656 i~iwd~~~~ 664 (1135)
+.|.....+
T Consensus 462 l~i~g~gqs 470 (1113)
T KOG0644|consen 462 LYILGTGQS 470 (1113)
T ss_pred eEEeccCCC
Confidence 999876444
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-16 Score=156.00 Aligned_cols=300 Identities=15% Similarity=0.184 Sum_probs=218.8
Q ss_pred eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC------CCeEEEEeecccCCceeEEEecCCCCEEEEEeC
Q 001159 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 535 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 608 (1135)
..+..|.+.|.++.|+.++++|++|+. |..+++|++. +.+++.....|+...|.|++|......+++|+.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 345678889999999999999999985 7889999985 346666666666558999999999999999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCC
Q 001159 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
+++|...|+.+.+.+..+......+.|+.+..+|-.+.+++.+.++.|.+||..........+-..
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-------------- 191 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-------------- 191 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec--------------
Confidence 999999999999999988877666789999999999999999999999999987652111100000
Q ss_pred CCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCC
Q 001159 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 768 (1135)
.
T Consensus 192 ----------------------------------------------------------------------------N--- 192 (609)
T KOG4227|consen 192 ----------------------------------------------------------------------------N--- 192 (609)
T ss_pred ----------------------------------------------------------------------------C---
Confidence 0
Q ss_pred cccccceEEEEEEecCCcce-eEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 769 SIAASKVVVRLIYTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
..... ..+.|+|....| ++.+..+-+-+||+.......... ....+ ++. . ...-..+
T Consensus 193 --~~~~F-~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~----------~~~~~------L~~--~-~~~~M~~ 250 (609)
T KOG4227|consen 193 --SGKNF-YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR----------SMFKG------LPQ--E-NTEWMGS 250 (609)
T ss_pred --CCccc-eeeeecCCCceeEEeccccCCCCceeeccccchHHhh----------hcccc------Ccc--c-chhhhhe
Confidence 01111 677788866554 455567888899876432211100 00000 100 0 2334678
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCC-------CeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----- 914 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----- 914 (1135)
.|+|+|..+.+-. ...-.+||+.+..+..--..|.. .+.+++|.- ...+++|+.+-.|++|.+..
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSY 328 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCcccc
Confidence 8999999888776 44466788877555433222332 467888985 35599999999999998752
Q ss_pred ------------------ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 915 ------------------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 915 ------------------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.+.+.+|+||..-+..+.|+|...+|++.+-.+.++||.--
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 12345789999999999999999999999999999999643
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-15 Score=164.48 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=162.2
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECC-CccE--EEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMM-TFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~-~~~~--~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~ 914 (1135)
......++++||+++|++++ ++.|.+|++. +++. +.... ..+....++|+| ++++|++++ .++.|.+|++++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34566789999999998775 6889999996 3433 22222 334567899999 788777766 488999999974
Q ss_pred c----eeeEEecCcCCCeEEEEEcCCCCeEEEE-cCCCcEEEEeCCCCceece---eeeecCCCCCCCCCCceEEEECCC
Q 001159 915 D----EVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 915 ~----~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
. +.+..+.+ .....+++++|++++++++ ..++.|.+||+.+...+.. .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 3 22333332 3346778999999988554 4679999999987432211 01111122 34578999999
Q ss_pred CcEEEEE--ecCeEEEEecC--Cce---eeccCCC---CCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEECCCceeeee
Q 001159 987 QTHLLVV--HESQISVYDSK--LEC---SRSWSPK---DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCR 1055 (1135)
Q Consensus 987 g~~l~~~--~d~~v~vwd~~--~~~---~~~~~~~---~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~~~~~~ 1055 (1135)
|++++++ .++.|.+|+++ ... +..+... ..+......++|+|||++|+++.. ++.|.+|+++.......
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 37999999993 112 2222111 011223346899999999998854 78999999965322111
Q ss_pred eCCceeccccccCCCCccEEEEecCCCCCEEEEEec-CCcEEEEecCCCc
Q 001159 1056 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMS-DGAVHVVEPSDAE 1104 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~v~~W~~~~~~ 1104 (1135)
+..+. +.. ..+..+.++| ||++|++++. +++|.+|++....
T Consensus 266 ~~~~~--~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 266 FEGHQ--PTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EeEEE--ecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCC
Confidence 11111 111 2344678888 6778877665 8999999886443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=152.66 Aligned_cols=215 Identities=19% Similarity=0.342 Sum_probs=163.6
Q ss_pred eeeEEeec--CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 337 KTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~~~--h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
-+++..+. +-+.|.|+.|.|++..+++. .|..|.+|+++.+..+.. .+....-.+|....++-
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-------------ev~ss~s~e~~~~ftsg 176 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-------------EVLSSESAEMRHSFTSG 176 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-------------eecccccccccceeccc
Confidence 44555565 45699999999999865443 388999999998776321 01111123467778899
Q ss_pred EEcC--CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-Ceeee
Q 001159 415 VWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY 491 (1135)
Q Consensus 415 ~~sp--d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~ 491 (1135)
+||| ||..+++. .|+++..||+++.++... .-.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..++.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s--I~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS--IEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcc--hhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCcccc
Confidence 9999 78888776 678899999998765443 23478889999999999877 899999999999999985 55788
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-----------------------------CceeEecCCCC
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAPGN 542 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~ 542 (1135)
++.+|...|+++.|+|..+ +++++|+.|..|.+|....- +.+.++..|..
T Consensus 253 el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 9999999999999999887 89999999999999954221 11225666788
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.|++++||.-..++++.-. -||.+.|=.+
T Consensus 332 SVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred ceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 9999999998887765432 2666666443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=168.99 Aligned_cols=298 Identities=17% Similarity=0.248 Sum_probs=234.5
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
...|. |.+-|..|.|+..|. +|++|+.|..|.+||...+..... ...||...|..-.|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 34455 999999999999998 799999999999999998876543 1468999999999988
Q ss_pred --CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec--
Q 001159 419 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-- 494 (1135)
Q Consensus 419 --d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 494 (1135)
+.+.|++++.||.+++=.+...+.+.....+..|.++|.-++.-|+... .|.|++.|+.+.-.|++.+.....+.
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 5668999999999999888766655555567789999999999999887 79999999999999998776544332
Q ss_pred -CCCC---CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce------eEec------CCCCcEEEEEEcCCCCEEEE
Q 001159 495 -GHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 495 -~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~l~~ 558 (1135)
.+.. ...+++.+|... ..+++++.|.-+++||.+..... ..+. .....|++++|+.++.-|++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 2333 567888888754 68999999999999998754332 1111 22337999999977666655
Q ss_pred EecCCCCCCeEEEEECCC--C----------eEE-EEeecccCC-ceeEEE-ecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 559 CGTSKEGESHLVEWNESE--G----------AIK-RTYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~--~----------~~~-~~~~~~~~~-~v~~i~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
... +-.|+++.... | ..+ +.++||... .|..+- |.|..+++++|+.-|.|.||+-.+++.+
T Consensus 354 SYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 543 55688885432 3 223 348888653 366664 5678899999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..+.+..+ .|+|+.-+|.-..||+.+-|..|+||-..+.
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99988766 7999999999999999999999999987443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-16 Score=172.66 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=200.6
Q ss_pred CccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
+.+|..... ..+...+.....|+|++|+|....++|.|+++|+|.+||+..+..... .........
T Consensus 224 ~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~s 289 (555)
T KOG1587|consen 224 LLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVS 289 (555)
T ss_pred EEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------ccccccccc
Confidence 344544444 677788888899999999999999999999999999999988765210 001112456
Q ss_pred CCcceEEEEEcCCCCe--EEEEeCCCeEEEEEeCCCCceeeeeEee---------cccCCEEEEEEecCCCeEEEEEEcC
Q 001159 407 AAISVNRCVWGPDGLM--LGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~--las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d~~~~~l~s~~~ 475 (1135)
|..+|+.+.|-.+..- +++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|++
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe 368 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTE 368 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcC
Confidence 9999999999875554 9999999999999887543211111111 11236899999987776 7899999
Q ss_pred CCcEEEEE---cCCCe-----eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc-CCCceeEecCCCCcEEE
Q 001159 476 DKMIKVWD---VVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 476 d~~i~iwd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~ 546 (1135)
+|.|.--+ ...+. .+..+..|.++|.++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 99988733 22222 2335567899999999988764 3444444 9999999887 56666677777778999
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCC--eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
++|||....++++. +.+|.|.+||+... .++.+.... ......+.|+++|+.+++|...|.+.+|++..
T Consensus 447 vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999887777665 46999999999743 344444433 32667788999999999999999999999964
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-14 Score=144.35 Aligned_cols=242 Identities=11% Similarity=0.108 Sum_probs=188.2
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
...+..+.|+.|...|..|+.|| -++|+........ ........|.-+-|+..=- .|++...-+.+++.+...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSLv--aiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSLV--AIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccccee--EEEecCCCceEEEEEcccC
Confidence 44577888999999999999999 6788776643311 1112233566777765421 3344434456999999888
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC---CCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..+..+. ...+|.++.++. +.|+.+-.+. |.|||+++.+.+.++.. +...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 8887775 566799998854 4566655544 99999999888776543 3446777777777789987643 2
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
..|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ ||++.+.+|+.+..+.-......|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 378899999999999999999988 9999999999999999999887 79999999999999976555567899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001159 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++|++.++.++|.||.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998755
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=159.80 Aligned_cols=273 Identities=14% Similarity=0.183 Sum_probs=179.1
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe-CCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~-~dg~i~iwd~~~ 439 (1135)
++++...++.|.+|++.+...+.. .+ .+ .+.+....++++|++++|++++ .++.|.+|++..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~--~~--------------~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTL--LQ--------------VV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceee--ee--------------EE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECC
Confidence 455567789999999964322110 00 01 1335577899999999987764 578899999974
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEE-cCCCcEEEEEcCC-Ce---eeeeecCCCCCeeEEEeeccCCccEE
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVA-GR---KQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~~-~~---~~~~~~~h~~~v~~i~~~~~~~~~~l 514 (1135)
...+...... ...+....++|+|+++. ++++ ..++.|.+|++.+ +. .+..+. +.....+++++|++ +++
T Consensus 67 ~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g--~~l 140 (330)
T PRK11028 67 DGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN--RTL 140 (330)
T ss_pred CCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC--CEE
Confidence 3223222122 13345678999999994 4444 4588999999864 32 223333 22345667887754 666
Q ss_pred E-EEEcCCeEEEEeCcCCCceeE-----ec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC--Ce--EEEEe
Q 001159 515 F-STAIDGKIKAWLYDYLGSRVD-----YD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GA--IKRTY 583 (1135)
Q Consensus 515 ~-s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~~ 583 (1135)
+ +...++.|.+||+++.+.... .. ..+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEEE
Confidence 4 555679999999986432211 11 12345678999999999988753 478899999873 33 34444
Q ss_pred ecccC-----CceeEEEecCCCCEEEEEe-CCCeEEEEECCCCc----eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-
Q 001159 584 SGFRK-----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTS- 652 (1135)
Q Consensus 584 ~~~~~-----~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 652 (1135)
..... .....+.++|++++++++. .++.|.+|+++... .+...... .....+.++|+|++|+++..
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEcc
Confidence 32111 1223588999999999975 47899999986533 22222221 13568999999999998776
Q ss_pred CCcEEEEEcC
Q 001159 653 DNGIKILANS 662 (1135)
Q Consensus 653 dg~i~iwd~~ 662 (1135)
+++|.+|++.
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999875
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-17 Score=177.50 Aligned_cols=288 Identities=14% Similarity=0.211 Sum_probs=224.8
Q ss_pred ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
.+..+.+|...|+|+.|...|.++++++. +..++||...++.++....||.+ .|+.++.+.+.-++++++.|..|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceE
Confidence 34456778889999999999999999974 88899999999999999999998 89999999998899999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcc
Q 001159 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1135)
++|.+..+.++..+.+|.+ .|++++|+|-. +.+.||++++||..-. .. .+...
T Consensus 257 rvWrl~~~~pvsvLrghtg--avtaiafsP~~----sss~dgt~~~wd~r~~--~~-~y~pr------------------ 309 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTG--AVTAIAFSPRA----SSSDDGTCRIWDARLE--PR-IYVPR------------------ 309 (1113)
T ss_pred EEEecCCCchHHHHhcccc--ceeeeccCccc----cCCCCCceEecccccc--cc-ccCCC------------------
Confidence 9999999999999998865 89999999965 6788999999998611 00 00000
Q ss_pred cccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccc
Q 001159 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1135)
Q Consensus 693 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 772 (1135)
|.. .+ ..
T Consensus 310 -----------------p~~---------------------------------------~~-----------------~~ 316 (1113)
T KOG0644|consen 310 -----------------PLK---------------------------------------FT-----------------EK 316 (1113)
T ss_pred -----------------CCC---------------------------------------cc-----------------cc
Confidence 000 00 01
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .++.|..++..+++++.|+.-..|.+.... | + ...+.-+.++.|
T Consensus 317 ~~~-~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~----------------~-~~~lif~t~ssd 363 (1113)
T KOG0644|consen 317 DLV-DSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W----------------R-SNLLIFVTRSSD 363 (1113)
T ss_pred cce-eeeeccccccccccccCCcccccchhhHhh---------------h----------------h-ccceEEEecccc
Confidence 122 667777888888999999888877543211 0 1 222222333333
Q ss_pred CC-EEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-CcCCCeE
Q 001159 853 DS-YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRIT 929 (1135)
Q Consensus 853 g~-~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~i~ 929 (1135)
-. +.+++- +-.+++|++.+|.+.+.+.+|...+..+.++|.+..+..+++.||...|||+-.|.+++... +| +.+.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~ 442 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLV 442 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceee
Confidence 33 444444 67899999999999999999999999999999888888899999999999999998776654 54 5567
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCce
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEK 959 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~ 959 (1135)
.-+||+||+.++....-|.+.|.....++.
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 779999999999988889999998766553
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-15 Score=167.18 Aligned_cols=258 Identities=18% Similarity=0.206 Sum_probs=177.6
Q ss_pred EEEEEec--CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTN--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~--dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
+.+.+-. |...+++++.||.|+||+--.... ....-+.-|..-++... + . .+.-.-+.|-....
T Consensus 1113 s~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------~~~eLVTaw~~Ls~~~~-----~--~-r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1113 SDLELINEQDDALLLTASSDGVIRIWKDYADKW------KKPELVTAWSSLSDQLP-----G--A-RGTGLVVDWQQQSG 1178 (1387)
T ss_pred ceeeeecccchhheeeeccCceEEEeccccccc------CCceeEEeeccccccCc-----c--C-CCCCeeeehhhhCC
Confidence 4444433 455688899999999996321110 00001223333333221 1 1 11124456666555
Q ss_pred EEEEEe-CCeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eeeEEecCcCCC--
Q 001159 855 YVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNR-- 927 (1135)
Q Consensus 855 ~la~~~-dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~-- 927 (1135)
+|.+++ -..|+|||...-.+.+.+.. ....|+++.-+-..|+++|.|..||.|++||.... ..+...+.|++.
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 555555 58899999998777777654 33457777665546899999999999999998743 356778889988
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCc
Q 001159 928 ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006 (1135)
Q Consensus 928 i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1006 (1135)
|..+.+-+.|- .|++|+.||.|++||+..........+.. |-......+++..+++...+|+|+.+.|+||++.++
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeeccCCCeeeecCcceEEEEecChh
Confidence 99999998775 49999999999999998753222111111 111112478999999999999987799999999777
Q ss_pred eeeccCCCCC----CCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 1007 CSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1007 ~~~~~~~~~~----h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
.+..+....+ ....+.|++|+|.--.||+|+.|.+|.||....+.
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 7666544322 14577999999999999999999999999987654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-15 Score=145.07 Aligned_cols=228 Identities=12% Similarity=0.135 Sum_probs=177.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
..+|+|.+|++|+. .+|++.....|.||.......- ...+.+..|...|++|.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCceeE
Confidence 46999999999998 6888888899999998876521 122347789999999999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee----eeecCCCCCee
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 501 (1135)
|+.|...++|....+...++...+..|+..++++.|+|.+. .|++||.-+.|.||-.+...-- +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999977777777778888999999999999999 8999999999999987654321 22345778899
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeC-----cCC-------------CceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLY-----DYL-------------GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
++.|+|++ -++++|+.|+..|++.. +.. .....+....+++..+.|+|+|..|+-.+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999976 79999999999999853 211 112233456779999999999999998874
Q ss_pred CCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCC
Q 001159 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
|..+.+-|..... .+.......- +..++.|-.+
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise 260 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE 260 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecC
Confidence 7788888876554 2333333232 5555555443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-15 Score=143.84 Aligned_cols=254 Identities=13% Similarity=0.235 Sum_probs=182.8
Q ss_pred EEeecCCCCeeEEEEecCCC----eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 340 VRTLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~----~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..++.|.-+++.+-|.|+.. .+|||.+ ..+++|.+...+.... +...+....-..+..+++++.
T Consensus 90 ~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFD 157 (364)
T KOG0290|consen 90 DANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFD 157 (364)
T ss_pred cCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee----------hhhhhccCcccccCCcccccc
Confidence 34467999999999999873 4777664 4999999874221100 001122222445778999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee---ee
Q 001159 416 WGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QY 491 (1135)
Q Consensus 416 ~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~ 491 (1135)
|+. |-++|.+++-|.+..|||++++..-.....|-+|...|..++|...+.+ .||+.|.||.|++||++.-+- +.
T Consensus 158 Wne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 158 WNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred cccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEe
Confidence 998 7789999999999999999997442233467799999999999998777 899999999999999986432 22
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcC-CeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCe
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESH 568 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~ 568 (1135)
.-.....+...++|++... +++++-..| ..|.+.|++.... ...+..|...|..++|.|.. ..|.++|. |.+
T Consensus 237 E~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~q 311 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQ 311 (364)
T ss_pred cCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cce
Confidence 2222256788888887643 678777665 4689999987654 55889999999999999965 46777764 888
Q ss_pred EEEEECCCCe------EEEEeecccCCceeEEEecCC-CCEEEEEeCCCeEEE
Q 001159 569 LVEWNESEGA------IKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKF 614 (1135)
Q Consensus 569 i~~wd~~~~~------~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~i 614 (1135)
+.+||+...- ++-.+. .+..|+.+.|++. +..++.+.. +++.+
T Consensus 312 aliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred EEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 9999997532 222233 2237899999964 456666543 34443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.2e-15 Score=164.80 Aligned_cols=291 Identities=13% Similarity=0.183 Sum_probs=206.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGV 425 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las 425 (1135)
.-..+.|+|-.+ .++++.....|+|||.+.++.+.. |+.. ......|+.+.+-. |..++++
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~-----F~n~-----------~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNG-----FDNG-----------AFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceecc-----ccCC-----------CCCCCccceeeeecccchhheee
Confidence 466788999887 566676667999999999887643 1110 11345688888865 5678999
Q ss_pred EeCCCeEEEEEeCCC--Cc---eeeeeEeeccc----CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC-
Q 001159 426 AFSKHIVHLYTYNPT--GE---LRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG- 495 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~--~~---~~~~~~l~~h~----~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 495 (1135)
|+.||.|+||+--.. +. +.....+.++. +.=.-+.|..... +|+++|+-..|+|||......++.+..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999974322 22 22111222221 1113467777666 677777789999999998888776643
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCc--EEEEEEcCCCCE-EEEEecCCCCCCeE
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNW--CTMMAYSADGTR-LFSCGTSKEGESHL 569 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~--i~~~~~s~~~~~-l~~~~~~~~~~~~i 569 (1135)
....|+++.-+-.. |+.+++|..||.|++||.+.... +.....|... |..+.+-+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 44567777654433 68999999999999999886544 3355667665 999999887765 888875 8889
Q ss_pred EEEECCCCeEEE--Eeeccc--CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCcceEEE
Q 001159 570 VEWNESEGAIKR--TYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRF 640 (1135)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~--~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~ 640 (1135)
++||++...... ++..|. +...+++..++....+++|+. +.|+||++.. +.+..+..+ .....+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999999742222 222232 324889999999999999988 9999999874 434333322 12346799999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCC
Q 001159 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 ~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+|..-++|+|+.|.+|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=157.31 Aligned_cols=200 Identities=22% Similarity=0.236 Sum_probs=154.5
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeee
Q 001159 886 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 965 (1135)
Q Consensus 886 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 965 (1135)
.+++|++ +|..|++|+.||.+|+|+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+..++..+...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999999888888888999999999999999999999999 8999999998533221
Q ss_pred ecCCCCCCCCCCceEEEECCCC---cE-EEE--EecCeEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE
Q 001159 966 QAPAGRQSPLVGETKVQFHNDQ---TH-LLV--VHESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1036 (1135)
Q Consensus 966 ~~~~~~~~~~~~v~~~~~s~dg---~~-l~~--~~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~ 1036 (1135)
.+.. .......+.|+.|+ .+ +++ ...+.|+.|++ .+.....+...-.....|++++.|+||+++|.|
T Consensus 224 -t~~~---k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 -TPFS---KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -CCcc---cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 1111 11455678888887 33 333 24567888777 221111111111124579999999999999999
Q ss_pred eCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1037 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1037 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
+.||.|.|++..+.+.+.-... .|...++.+.|+| |.+++++.+.|.+..+..+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 9999999999998877754432 3345677999999 7789999999999999988663
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-15 Score=164.43 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=185.5
Q ss_pred CCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCc--eee-eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 407 h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~--~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
-...|.|+.|+| +..++|.|..+|+|.+||+..+.. ... ......|..+|+.+.|..+-...-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 667888889999999999988755 111 1123468999999999876442258999999999999
Q ss_pred EcCCCee------eeeec------CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--------eeEecCCCC
Q 001159 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--------RVDYDAPGN 542 (1135)
Q Consensus 483 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~~~~ 542 (1135)
+++.-.. ..... .-...++++.|.+... ..++.|+.+|.|.--+-...+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1234688999988765 7899999999988733222211 225566788
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.|.++.++|-+..++..+. |.++++|... ...++..+..+.+ .+++++|||... .|+++..||.+.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998876664442 8899999987 6677777777666 699999999875 4566778999999998754
Q ss_pred --ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 621 --NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++.+.... ....+.+.|++.|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 344444433 335677888889999999999999999998644
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-15 Score=167.66 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=164.3
Q ss_pred cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCcee
Q 001159 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1135)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~ 444 (1135)
+..|.|||........ +..|...+.+++|||||+.||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654211 45678889999999999999988654 469999998865321
Q ss_pred eeeEeecccCCEEEEEEecCCCeEEEEEE-cCCCcEEEE--EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEE-EcC
Q 001159 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AID 520 (1135)
Q Consensus 445 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~d 520 (1135)
...+.+| ...++|+|||+ .|+.+ +.++.+.|| |+.++. ...+..+...+.+..|+|++ ..|+.+ ..+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2233333 44689999999 45544 567766555 655555 45666677778889998865 655544 467
Q ss_pred CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 521 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|...+|+++..........+.. .+..|+|||++|+..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222223332 45789999999988753 24777999988765433222 23457899999
Q ss_pred CEEEEEeCCCeEEEEEC--CCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 601 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
++|++++.++.+.+|++ .+++....+..+.. .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998998888875 35777777765543 5788899884
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-14 Score=141.10 Aligned_cols=240 Identities=14% Similarity=0.205 Sum_probs=184.0
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceee
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 918 (1135)
...+..+.|..|...|..|+....++|+................|--+-|+. .++|..+.+. .+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4556677799999999999966678888876554322333344577778876 4677666553 5999999988888
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-E--ec
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 995 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~d 995 (1135)
..+. ...+|.+|.++ .++|+.+=.+. |.|+|+++-+.+.+.....++ ..++.++.+++.+.|+|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n-----~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPN-----PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCC-----ccceEeeccCCCCceEEecCCCCC
Confidence 7776 34679999985 45677666555 999999997755442222111 145677777778889998 3 57
Q ss_pred CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCe-EEEEECCCceeeeeeCCceeccccccCCCCcc
Q 001159 996 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1073 (1135)
Q Consensus 996 ~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
|.|.|||. +.+.+..+. +|.+++-+++|++||.+|||+|+.|+ ||||.+.+|+.+.+++.... ....
T Consensus 153 GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~I 221 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSI 221 (391)
T ss_pred ceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEE
Confidence 89999999 777766654 67999999999999999999999998 79999999999999986643 2556
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.+++|+| ++.+|++.+..++|++|.++...
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 6899999 78999999999999999998765
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=155.68 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=158.4
Q ss_pred EEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC
Q 001159 845 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
.+++|+++|..+++|+ ||++|||+..+...+.....|..+|.++.||| ||++||+.+.| ..+||+++++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 899999999977776653
Q ss_pred c--CCCeEEEEEcCCC-----CeEEEEcCCCcEEEEeCCCCceeceeeeec-CCCCCCCCCCceEEEECCCCcEEEE-Ee
Q 001159 924 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGRQSPLVGETKVQFHNDQTHLLV-VH 994 (1135)
Q Consensus 924 h--~~~i~~l~~s~d~-----~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 994 (1135)
. ......+.|+.|+ ..++....-+.|+.|++..+..-....... ...+ ..+++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 2 2346778898887 334444556778888887765421111111 1111 46899999999999999 57
Q ss_pred cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 995 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 995 d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+|.|-|++. +.+++... .+.|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999 66665544 356799999999999999999999999998888764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-13 Score=146.55 Aligned_cols=332 Identities=14% Similarity=0.141 Sum_probs=208.1
Q ss_pred EEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
+++++-..++.|.+.|..+.+.+.++.........+.++|+ |.++++++.||.|.++|+.+.+....+.... ...++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceE
Confidence 35677788999999999999999999865554455667664 4899999999999999999999877776544 56789
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc------CCceeEEEecCCCCEEEEE-eCCCeEEEEECCCC
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNM 620 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~ 620 (1135)
++|+||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..++.+..++.. -+.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999999997764 37789999999999998876542 2246677788888855554 45588888898776
Q ss_pred ceEEEEeCCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCc
Q 001159 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 699 (1135)
+.+..-..... .......|+|++++++++ ..++.|-++|..++. ....+....
T Consensus 161 ~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k-~v~~i~~g~------------------------ 214 (369)
T PF02239_consen 161 KNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK-LVALIDTGK------------------------ 214 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE-EEEEEE-SS------------------------
T ss_pred cccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccce-EEEEeeccc------------------------
Confidence 54432221111 246789999999987665 446788899987662 111110000
Q ss_pred cccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEE
Q 001159 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
..|.... ..+
T Consensus 215 ---------------------------------------------------------------------~p~~~~~-~~~ 224 (369)
T PF02239_consen 215 ---------------------------------------------------------------------KPHPGPG-ANF 224 (369)
T ss_dssp ---------------------------------------------------------------------SBEETTE-EEE
T ss_pred ---------------------------------------------------------------------ccccccc-ccc
Confidence 0011111 110
Q ss_pred EEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE-EE
Q 001159 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV-MS 858 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l-a~ 858 (1135)
.+|. .+.++. .+..+... ..
T Consensus 225 -php~--------------------------------------------------------~g~vw~--~~~~~~~~~~~ 245 (369)
T PF02239_consen 225 -PHPG--------------------------------------------------------FGPVWA--TSGLGYFAIPL 245 (369)
T ss_dssp -EETT--------------------------------------------------------TEEEEE--EEBSSSSEEEE
T ss_pred -cCCC--------------------------------------------------------cceEEe--eccccceeccc
Confidence 1111 111111 11222332 22
Q ss_pred EeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEEcccceeeEEecCcC-CCeEEEEE
Q 001159 859 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAF 933 (1135)
Q Consensus 859 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~i~~l~~ 933 (1135)
.+.+.+.+||..+++.++++...... ..+..+| ++++|.+. ...++|.++|..+.+.+..+.... ..+..+.|
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred ccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 23456678999999999999987766 8888899 88999887 455899999999998877775322 35899999
Q ss_pred cCCCCeEEEEcC--CCcEEEEeCCCCceece
Q 001159 934 SPTLNALVSSGA--DAQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 934 s~d~~~l~s~~~--D~~i~iwd~~~~~~~~~ 962 (1135)
++||+.+..+.. ++.|.++|..+.+....
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 999986655443 33699999999886543
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-14 Score=161.26 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=183.1
Q ss_pred ccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEeCCC----CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~-~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|...|..++.++.. .++++||.||+|++||...- ...+...++..-...+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 56788888898888755 99999999999999998642 22333334444567899999999999 7899999999
Q ss_pred EEEEEcCCC--e-----eeeeecCC-CCCeeEE-EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE--ecCCCCcEEEE
Q 001159 479 IKVWDVVAG--R-----KQYTFEGH-EAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 547 (1135)
Q Consensus 479 i~iwd~~~~--~-----~~~~~~~h-~~~v~~i-~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~ 547 (1135)
|++.++... + +.+....+ .+.+.++ ++........++.+..-+.|..||++....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 1 12222222 3344444 333322223788888999999999988766554 34456789999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC---CCEEEEEe--CCCeEEEEECCCCce
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---RNRFLAAG--DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~--~dg~i~iwd~~~~~~ 622 (1135)
+.+|-+.+++.|.. .|.+.+||++-+.++.........++..++.+|- ....++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999975 8889999999999988877655557777766653 34555544 578899999999876
Q ss_pred EEEEeCCCCC-----------------CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 623 LTTVDADGGL-----------------PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..++...... .......+...+..+.+|+.|..|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6665432110 01122333344568899999999999998766
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-12 Score=144.01 Aligned_cols=197 Identities=15% Similarity=0.184 Sum_probs=152.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC---cceEEEEEcCCCCeE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA---ISVNRCVWGPDGLML 423 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~spd~~~l 423 (1135)
+.|....+.-..+ .++.++.+..+.|||...+...... ..+.. ....-+.++++.-++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i------------------~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI------------------QSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc------------------CCCceEEEEeEEEEeccCcEEEE
Confidence 3455556666665 5677888999999999876544320 00111 122234467778899
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-eecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~ 502 (1135)
++|+.-+.|.+|+........ .+.+|.+.|.++.|+.||. ++++.|+|.++++|++.+++... +.-+|.+.|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999998433221 4789999999999999999 89999999999999999988776 66689999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
++|+|. .+++++.|-+.++|+.+..... .+..| ...|..++..++...+++++. |+.+++||+..
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 999874 8999999999999976544333 55555 447899999998888888875 88999999864
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-13 Score=146.71 Aligned_cols=271 Identities=9% Similarity=0.103 Sum_probs=166.8
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
+++.|.+.|..+.+.+..+..... .-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++||
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDG 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCC
Confidence 378999999999999999987554 34457899999999999999999999999999999997643 35889999999
Q ss_pred CEEEEEE-CCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 645 SLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 645 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
++++++. .++.+.++|..+. +.++.+.......
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT---EEEEEE--EE-T---------------------------------------------
T ss_pred CEEEEEecCCCceeEeccccc-cceeecccccccc---------------------------------------------
Confidence 9998775 5899999999887 4444433211100
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEe-cccceeeeEEe
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLAL-ASNAVHKLWKW 802 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~-~~dg~i~iw~~ 802 (1135)
.....++ ..+..++....+++. -..+.|-+-|.
T Consensus 124 ---------------------------------------------~~~~~Rv-~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 124 ---------------------------------------------DGPESRV-AAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp ---------------------------------------------TTS---E-EEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred ---------------------------------------------cccCCCc-eeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 0012233 666677777744444 33455544443
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS 880 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~ 880 (1135)
... ..+....+.. ........|+|++++++++. .+.|.++|.++++.+..+..
T Consensus 158 ~d~---------------------~~~~~~~i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 158 SDP---------------------KNLKVTTIKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp TTS---------------------SCEEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ccc---------------------cccceeeecc----cccccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 211 0011111111 45566789999999988876 68999999999988776642
Q ss_pred ----CCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEE----
Q 001159 881 ----PPPAATFLAFHPQ---------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS---- 943 (1135)
Q Consensus 881 ----h~~~v~~l~~sp~---------~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~---- 943 (1135)
|..+...+ .+|. .+...++.-....+.+||..+.+.++++....++ .-+..+|+++++...
T Consensus 213 g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 213 GKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-
T ss_pred cccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCC
Confidence 33333332 2221 1222222222335667888899999999877666 788889999999887
Q ss_pred cCCCcEEEEeCCCCc
Q 001159 944 GADAQLCMWSIDKWE 958 (1135)
Q Consensus 944 ~~D~~i~iwd~~~~~ 958 (1135)
...++|.++|.++.+
T Consensus 291 ~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 291 PDADTVQVIDKKTLK 305 (369)
T ss_dssp SSHT-EEEEECCGTE
T ss_pred CCCceEEEEECcCcc
Confidence 344778888888754
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-14 Score=148.97 Aligned_cols=286 Identities=11% Similarity=0.135 Sum_probs=215.3
Q ss_pred eeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCC--CcceEEEE
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCV 415 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~ 415 (1135)
++++.|.+...-+.+..||||++++|+|.+.-.|++||+..-.... .-| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEE
Confidence 4566777888999999999999999999999999999998654332 222 34466666
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
.|-|-..++.-..|.+|.+...-. ... .+. -...-.+++++.-... |+.++....|+-++++.|+-+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 777777777777888887654332 111 111 1223455666655543 44455566799999999999999988
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC------CCC-----cEEEEEEcCCCCEEEEEecCCC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~-----~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..+.++++..++.. .+|++|+.+|.|..||.++......+.. +.+ .|+++.|+.+|-.+++|..
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88999999998876 7899999999999999988766554332 222 5999999999999999875
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCC--CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
.|.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+.... .++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeec
Confidence 8899999999988876554444447888999765 3455554 55789999999999988886543 589999999
Q ss_pred CCCEEEEEECCCcEEEEEcC
Q 001159 643 EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~ 662 (1135)
++-+++++-.++.+..|=+.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCceEEEecCCCcceeEEcc
Confidence 99999999988887777554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-16 Score=168.72 Aligned_cols=301 Identities=18% Similarity=0.234 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 001159 168 SSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPS 247 (1135)
Q Consensus 168 ~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~~~~~~~ 247 (1135)
+-.|.+|+.|+++.|+.+|..|.++++.+|||.+|+|+.++.-...|.++..++ -..+ -..|+
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl----~~re-------l~~~y------ 1074 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRL----GTRE-------LQSFY------ 1074 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcc----cchh-------hcCcc------
Confidence 335999999999999999999999999999999999999543333333333222 0000 00000
Q ss_pred CccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCccccCCcchhHHHhhcccCCcceeeecCCCCCC
Q 001159 248 PGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTP 327 (1135)
Q Consensus 248 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~ 327 (1135)
+| +.-.-.+...+..+.+
T Consensus 1075 ----~g------------------------------------------V~g~~~dr~~IFSRFr---------------- 1092 (1516)
T KOG1832|consen 1075 ----SG------------------------------------------VHGNRRDRQFIFSRFR---------------- 1092 (1516)
T ss_pred ----cc------------------------------------------cccCcccchhhHhhcc----------------
Confidence 00 0000011111222221
Q ss_pred ccccCCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
..+++. |....+|++||-+.+ .|++|+..|.|+++++.+|..... ..+
T Consensus 1093 -----------~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~nc 1141 (1516)
T KOG1832|consen 1093 -----------SWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNC 1141 (1516)
T ss_pred -----------cchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccc
Confidence 233444 677899999999998 688999999999999999987765 567
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
|...|+.+.-|.||..+++.+.-. -..+|++.+-. ...+.+. .-.++.|+...+. . +.|..-..+.+||+
T Consensus 1142 H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1142 HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDV 1213 (1516)
T ss_pred cccccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH-H-HhcccccceEEEec
Confidence 999999999999999887765433 47899987632 2222332 3567889876553 2 33333457899999
Q ss_pred CCCeeeeee-cC---CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 485 VAGRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 485 ~~~~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
+++..+.++ .+ .+..-++..|+|.. .+++ .|| .+||++..+.+..+..-... -.-.|+|.|..++..+
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence 999887763 22 22334677788875 4444 234 47999988776655443321 1235899999998865
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 606 (1135)
.|||++|.+.++....-.. ..+.|+..|+.++..
T Consensus 1286 ---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 ---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 3899999998887776554 457788888877654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=150.44 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=198.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
|.+|.+.|+.|.|+..|..|++|+.|..|.+||...++.... -..||...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998765442 234899889888898865444799999999999877
Q ss_pred cCC-Cee--eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec---CCCC---cEEEEEEcCCCC
Q 001159 484 VVA-GRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGN---WCTMMAYSADGT 554 (1135)
Q Consensus 484 ~~~-~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~s~~~~ 554 (1135)
+.. +.+ ...+..|.++|..++..|... ..|.+++.|+.+.-+|++.......+. .+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 653 333 245667999999999888755 789999999999999998766543322 2222 567888999776
Q ss_pred -EEEEEecCCCCCCeEEEEECCCCe------EEEEeecc-----cCCceeEEEecCCCCEEEEEeCCCeEEEEECCC--C
Q 001159 555 -RLFSCGTSKEGESHLVEWNESEGA------IKRTYSGF-----RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--M 620 (1135)
Q Consensus 555 -~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~-----~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~ 620 (1135)
.+++++. +..+++||.+.-. .+..+..+ ....|++++|+.++.-+++...|-.|+++.... |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5666664 6778999986422 12222222 222589999998888888888888999995443 2
Q ss_pred ----------ceEEE-EeCCCCCCCcceEEE-cCCCCEEEEEECCCcEEEEEcCCCchhhhhccc
Q 001159 621 ----------NMLTT-VDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 621 ----------~~~~~-~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 673 (1135)
..+.. +++|.....|..+-| .|...++++|++-|.|.||+-.++ ++++.+++
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~Meg 434 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEG 434 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhc
Confidence 12233 677877777888876 578899999999999999999888 77776655
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-13 Score=134.18 Aligned_cols=284 Identities=15% Similarity=0.189 Sum_probs=188.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~la 424 (1135)
+..+..++|++--- -+|++..|-.|+|||-....... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34688899999553 46788899999999976522110 11224567999999994 56788
Q ss_pred EEeCCCeEEEEEeCCCCcee-----------eeeEeecccCCEEEEEEecCCCeEEEEEEc-CCCcEEEEEcCCCeeeee
Q 001159 425 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~-----------~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~ 492 (1135)
+|+..| |.||......... +...-.+| .+|++|+|.+||. .+++++ .|..|.|||+.++.++.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 887776 9999875321111 11122345 5899999999999 677776 467999999999987765
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
....-+.+.-+.|+|++ ++++++.-|+..++|.....-.........+.|...+|+|+|++|+.... +. -.+|
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLY 306 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEE
Confidence 54566788999999966 89999999999999955433333333344458999999999998875542 12 2233
Q ss_pred ECC----CCe-----------EEEEe------ec--ccCCceeEEEecCCCCEEEEEeCC--------CeEEEEECCCCc
Q 001159 573 NES----EGA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMN 621 (1135)
Q Consensus 573 d~~----~~~-----------~~~~~------~~--~~~~~v~~i~~s~~~~~l~~~~~d--------g~i~iwd~~~~~ 621 (1135)
.+. .+. ++..+ .+ .-.+...+++|+|.|.++++.-.. +.|.+||....-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 221 100 11111 11 012367889999999999986432 346778877654
Q ss_pred eEEEEe--CCCCCCCcceEEEcC---CCCEEEEEECCCcEEEEEc
Q 001159 622 MLTTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ~~~~~~--~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~ 661 (1135)
.+.... ...+. ....+.|+| ++.+|.++-+.|.+.-|++
T Consensus 387 ~vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 387 PVELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ceEEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 444331 11111 245677776 6778888888888887765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-11 Score=122.11 Aligned_cols=522 Identities=15% Similarity=0.153 Sum_probs=280.8
Q ss_pred ccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEE------EeccceEEEEEcCCccccccCCceeecccccccchhhhh
Q 001159 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLV------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 330 ~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
|..+...++..+...+-+-|+...|+|+|+.++++ +...+.+.+.+.+.|+..+- ++
T Consensus 62 We~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-Ty---------------- 124 (668)
T COG4946 62 WEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TY---------------- 124 (668)
T ss_pred HHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EE----------------
Confidence 44444566777777788899999999999976552 12334677888788875432 11
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCe----EEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeEEEEEE-----
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC----- 473 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~----i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~----- 473 (1135)
+ | ...-.-..|+|||+.|++...-.- -.+|.+..... .. .| .-++.+.+.+- ||. ++.|
T Consensus 125 f-G-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntyd 193 (668)
T COG4946 125 F-G-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYD 193 (668)
T ss_pred e-c-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCccc
Confidence 1 2 112233559999999988754321 23344332211 11 11 22345555553 442 3322
Q ss_pred ---------cCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC-
Q 001159 474 ---------GDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN- 542 (1135)
Q Consensus 474 ---------~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~- 542 (1135)
+.-| ++|--.. |+....+-.-.+.|++-.+... ...+....||.=.+|.++-.+.-. ..|..
T Consensus 194 LP~WK~YkGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV~~---RvYFlsD~eG~GnlYSvdldGkDl--rrHTnF 266 (668)
T COG4946 194 LPHWKGYKGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIVGE---RVYFLSDHEGVGNLYSVDLDGKDL--RRHTNF 266 (668)
T ss_pred CcccccccCCccc--eEEEEecCCcceeeeeecCCCcCCceEEcc---eEEEEecccCccceEEeccCCchh--hhcCCc
Confidence 2222 3454332 2222333223333433322211 233333445555555443222211 11221
Q ss_pred -cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec---c---cCC-cee---EE-EecC-CCCEEEEEeCC
Q 001159 543 -WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKR-SLG---VV-QFDT-TRNRFLAAGDE 609 (1135)
Q Consensus 543 -~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~---~i-~~s~-~~~~l~~~~~d 609 (1135)
.-.+-..+.||+.++... .|.|+++|..+..+.+.--+ . ... .+. -+ .|++ +|.+++..|.
T Consensus 267 tdYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR- 340 (668)
T COG4946 267 TDYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR- 340 (668)
T ss_pred hhccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-
Confidence 233344578999988653 55699999987654332111 1 000 010 01 1222 5778887765
Q ss_pred CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC-cEEEEEcCCCchhhhhccccccccccCCCCCCCC
Q 001159 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
|...+.+...+-.++.-. ...|.-..+.-+++-++.|..|| .+-|+|..++. . +.+..
T Consensus 341 GkaFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~-kr~e~--------------- 399 (668)
T COG4946 341 GKAFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-V-KRIEK--------------- 399 (668)
T ss_pred CcEEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce-E-EEeeC---------------
Confidence 667777666554443321 22477777777888899999998 89999988772 1 11110
Q ss_pred CCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCC
Q 001159 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 768 (1135)
T Consensus 400 -------------------------------------------------------------------------------- 399 (668)
T COG4946 400 -------------------------------------------------------------------------------- 399 (668)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEE
Q 001159 769 SIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~ 848 (1135)
.-+.| .++..++||+.++++.....+-+.|+ .+|.....+-.. .+-|+..+
T Consensus 400 --~lg~I-~av~vs~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS~----~~lItdf~ 450 (668)
T COG4946 400 --DLGNI-EAVKVSPDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKSE----YGLITDFD 450 (668)
T ss_pred --Cccce-EEEEEcCCCcEEEEEcCceEEEEEEe----------------------cCCCeeEecccc----cceeEEEE
Confidence 12334 88999999998888877666665544 444443333333 77899999
Q ss_pred eecCCCEEEEEe-C----CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC-------CCcEEEEEcc--c
Q 001159 849 LSKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-------DSSVQIYNVR--V 914 (1135)
Q Consensus 849 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-------dg~v~iwd~~--~ 914 (1135)
|+|+++++|.+- + ..|+++|+.+++....-. ....-.+-+|.| ++++|..-+. |..+.=+... +
T Consensus 451 ~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~~vs 528 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQRVS 528 (668)
T ss_pred EcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEeeec
Confidence 999999999996 4 459999999887755432 444456778999 8888876542 2222222211 1
Q ss_pred ceeeEEec-CcCCCeEEEEEcCCCCeEE-EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLK-GHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~-~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
.-.+..|. +. .||-.+..= .-+.++.+-+=+++... ..+....+ .-..++=-.+|+.+..
T Consensus 529 kPylv~L~~g~--------~sP~~q~p~~~~~ea~e~dle~ie~r~----eP~pVee~------dY~sI~~lk~~killf 590 (668)
T COG4946 529 KPYLVVLGRGY--------YSPFNQPPDEANSEAGEVDLEGIEDRV----EPFPVEEG------DYRSIAGLKNGKILLF 590 (668)
T ss_pred cceEEEecCCC--------CChhhcCchhcCccccceehhhhcccc----cccccCcc------ceeEeeecCCCeEEEE
Confidence 11111111 11 112111111 11222332222222211 01111111 0011111112211111
Q ss_pred -------------E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 993 -------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 993 -------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+ ..|.+.+||++.+.+..+ ...++++..|+|++.+.. -.||.+++++++.
T Consensus 591 s~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 591 SYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EeeccchhhhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 246788999966665554 456899999999999888 6899999999986
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-12 Score=138.08 Aligned_cols=537 Identities=12% Similarity=0.116 Sum_probs=327.3
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.....|+.|+.... ++|+|+.||.++|-.+.+...-.. .-.+...+.-.....+.||.+.|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 44788999999887 799999999999999876533211 0011122222334458999999999999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-eeecCCCCCeeEEE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSVC 504 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~ 504 (1135)
...+|.|.+|-+-.+.-.... .-...++.|.+++|+.||+ .|+....||.|.+=.+...+.- +.+++ .....+.
T Consensus 89 SDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred cCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 999999999999887644321 1123456799999999999 7888888999887765443321 12222 1233566
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCC-------ceeE----ecCCCCcEEEEEE--------cCCCCEEEEEecCCCC
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRVD----YDAPGNWCTMMAY--------SADGTRLFSCGTSKEG 565 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~----~~~~~~~i~~~~~--------s~~~~~l~~~~~~~~~ 565 (1135)
|+++. ..++.+-.+|.+++||.+..- +... +......|..+.| -||...++++..
T Consensus 164 ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---- 237 (1189)
T KOG2041|consen 164 WSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---- 237 (1189)
T ss_pred ecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----
Confidence 77755 677778888999999875421 1111 1112223445554 257778888864
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC---------CeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+|.+.+..-.+......+.... .+..+.|+++|..++.+|.+ +.|.+|.. -|+.+.+++..+. .|+
T Consensus 238 nGr~QiMR~eND~~Pvv~dtgm--~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It 312 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDTGM--KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CIT 312 (1189)
T ss_pred CceehhhhhcCCCCCeEEeccc--EeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eee
Confidence 6666665433322222222222 56778999999999998743 25666654 3777888877655 689
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 716 (1135)
++.|-..|-.++.+ .|+.|.+=+++... ....++....
T Consensus 313 ~lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~TvV---------------------------------------- 350 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEETVV---------------------------------------- 350 (1189)
T ss_pred eeEEcCCceEEEEE-ecceEEEEeecccc-eEEEeeeEEE----------------------------------------
Confidence 99998888777765 45678776665431 1111110000
Q ss_pred CCCccccccccCCCCcccccccccccc---cccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc
Q 001159 717 PPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS 793 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~ 793 (1135)
++-... ...|.+||..+.....+ . .... .++++..+--.|+.-..
T Consensus 351 ---------------------y~y~~~e~p~y~i~Fwdtk~nek~vK--~--------V~~~-~~~a~~~ehCvL~~~~d 398 (1189)
T KOG2041|consen 351 ---------------------YVYQKEELPQYGIMFWDTKTNEKTVK--T--------VTHF-ENMAFYREHCVLINRQD 398 (1189)
T ss_pred ---------------------EEEccCCCcceEEEEEecccChhhhh--h--------hcce-eehheecccEEEEeccc
Confidence 000000 13466777664322111 1 0111 56666666665666666
Q ss_pred cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCcc
Q 001159 794 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 873 (1135)
Q Consensus 794 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~ 873 (1135)
+|.+.-++--.. + + ......+-+. -|+.+... -..|.-.-..-++.+++.++...+.+|.....+
T Consensus 399 ~~~i~e~s~le~-~---~---~~~~l~LCNS-IGT~lD~k-------ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 399 DGVIPEYSTLEN-R---S---RVYFLQLCNS-IGTSLDYK-------YTDIRPKFVCVNGICVVIASEERYFIWHYVLPK 463 (1189)
T ss_pred cCCCcchhhhhc-c---c---ceEEEeeecc-cCCcCCCC-------cceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence 666654421100 0 0 0000011110 01111000 111222222337778888887788888653211
Q ss_pred E--------------------------------EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe
Q 001159 874 V--------------------------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 874 ~--------------------------------~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 921 (1135)
. .+++.|..++|.+++.+. ++|.++-..|.|+-|.+.+.-.....
T Consensus 464 ~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y 540 (1189)
T KOG2041|consen 464 FNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSY 540 (1189)
T ss_pred hhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeecc
Confidence 0 133455667888888864 68999999999999999987766655
Q ss_pred cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC---CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCe
Q 001159 922 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ 997 (1135)
Q Consensus 922 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 997 (1135)
. -...|..++.+-+..++|....-|.+.+.|+.- +..+.. +..... ..|..+.|..|+..+.+ -....
T Consensus 541 ~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~--~~~~er-----rDVWd~~Wa~dNp~llAlmeKtr 612 (1189)
T KOG2041|consen 541 P-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKL--IYTSER-----RDVWDYEWAQDNPNLLALMEKTR 612 (1189)
T ss_pred c-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeee--eehhhh-----hhhhhhhhccCCchHHhhhhhce
Confidence 4 345689999998889999988889999998872 222211 111111 46788888888876666 34455
Q ss_pred EEEEec
Q 001159 998 ISVYDS 1003 (1135)
Q Consensus 998 v~vwd~ 1003 (1135)
+.|++-
T Consensus 613 myifrg 618 (1189)
T KOG2041|consen 613 MYIFRG 618 (1189)
T ss_pred EEEecC
Confidence 666664
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=157.09 Aligned_cols=270 Identities=14% Similarity=0.195 Sum_probs=186.2
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+.++..+. |...|..++.++....++++|+.||+|++|+...-..-. ..++ ....+.-....+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4567788887 999999999988774489999999999999986432110 0111 00012225678999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCC--Ccee--eeeEeecc-cCC-EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GELR--QHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~--~~~~--~~~~l~~h-~~~-v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+...+.+..+|+++.||.|++.+++-. +... +......+ .+. |..-+|....+...++.+...+.|..||++..
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998762 1111 11111222 223 44445555444336888888999999999887
Q ss_pred eeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-CCcEEEEEEcC---CCCEEEEEec
Q 001159 488 RKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~---~~~~l~~~~~ 561 (1135)
....+++ ...+.|++++.+|.. .++++|+..|.+.+||++-...+.....+ ..++..+...| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 7665554 346789999998866 79999999999999999987777655432 34666665554 3456666654
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCC------------------ceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
.+.+.|.+|++.+|....++-...+. ......+...+..+++|+.|..|+.||....
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 25778999999998766665443110 1112333344568899999999999998653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-11 Score=121.82 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=102.7
Q ss_pred EEEEEecCCcceeEecccc-eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
.-..+.-++..++.+..|| .+-+|+. .+++.... .. . -+.|.++..++||++
T Consensus 363 rY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~-e~---~-lg~I~av~vs~dGK~ 415 (668)
T COG4946 363 RYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRI-EK---D-LGNIEAVKVSPDGKK 415 (668)
T ss_pred EEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEe-eC---C-ccceEEEEEcCCCcE
Confidence 4444555555678888887 6777754 33332221 11 2 678999999999999
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEcccceeeEEecCcCCCeEE
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+| .|++||+.+++....-. ..+.=.+
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Dfs 493 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFS 493 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccC
Confidence 99998 58899999999987665555667899999999 999999987665 68999999888654433 3333456
Q ss_pred EEEcCCCCeEEEEc
Q 001159 931 LAFSPTLNALVSSG 944 (1135)
Q Consensus 931 l~~s~d~~~l~s~~ 944 (1135)
-+|.||+++|.--+
T Consensus 494 PaFD~d~ryLYfLs 507 (668)
T COG4946 494 PAFDPDGRYLYFLS 507 (668)
T ss_pred cccCCCCcEEEEEe
Confidence 78999999877654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-14 Score=160.45 Aligned_cols=234 Identities=13% Similarity=0.110 Sum_probs=151.8
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec--cceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++.+|...........+...|.+++|||||++++.++.. +..|.+||+.+++..... .+.
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~ 247 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFR 247 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCC
Confidence 3444444333333334477889999999999965444332 247999999887532110 022
Q ss_pred CCCcceEEEEEcCCCCeEEEEe-CCCeEEEE--EeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~-~dg~i~iw--d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+| ..+++|||||+.|++++ .+|.+.|| |+.++. .. .+..+...+.+.+|+|||+. ++++...++...||
T Consensus 248 g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVY 319 (429)
T ss_pred Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEE
Confidence 33 34689999999998875 57766555 555543 22 45567777889999999994 33345567888888
Q ss_pred EcCCC-eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 483 DVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 483 d~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
++... .....+ .+.. ....|+|++ +.|+.++.++ +.+||+.++........ .....+.|+|||++|++++.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc
Confidence 87532 222333 3443 456777754 7888777765 45599987765432222 23356789999999998875
Q ss_pred CCCCCCeEEEEEC--CCCeEEEEeecccCCceeEEEecCC
Q 001159 562 SKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 562 ~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
++.+.+|.+ .+|..++.+..+.+ .+...+|+|-
T Consensus 392 ----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 392 ----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 344455543 35778888887765 6788889874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-13 Score=134.17 Aligned_cols=284 Identities=13% Similarity=0.137 Sum_probs=188.0
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ ..++|++---.++++..|-.|++|+-.. .....+.. . - ...|+|++|-|.
T Consensus 99 ~dl-r~~aWhqH~~~fava~nddvVriy~kss--------------------t~pt~Lks--~---s-QrnvtclawRPl 151 (445)
T KOG2139|consen 99 IDL-RGVAWHQHIIAFAVATNDDVVRIYDKSS--------------------TCPTKLKS--V---S-QRNVTCLAWRPL 151 (445)
T ss_pred cce-eeEeechhhhhhhhhccCcEEEEeccCC--------------------CCCceecc--h---h-hcceeEEEeccC
Confidence 344 7888998766788888999999996321 00111111 1 1 678999999995
Q ss_pred -CCEEEEEeCCeEEEEECCCc----cE--------EEEE--eCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcccce
Q 001159 853 -DSYVMSASGGKVSLFNMMTF----KV--------MTMF--MSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDE 916 (1135)
Q Consensus 853 -g~~la~~~dg~i~vwd~~~~----~~--------~~~~--~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~ 916 (1135)
++-+++|..+.|.+|..... .. ...+ .+| ..|++|+|.+ ||..+++++. |..|.|||.+++.
T Consensus 152 saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred CcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCC
Confidence 45777777889999987532 11 1112 234 5799999999 7888888874 6789999999988
Q ss_pred eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeC-CCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec
Q 001159 917 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI-DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 995 (1135)
Q Consensus 917 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 995 (1135)
.+.-...-.+.++-+.|||||.+|+.+.-|+..++|.. +++....... .. ..|...+|+|+|++|..+..
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l---gs------grvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL---GS------GRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec---cC------CceeeeeecCCCCEEEEEEc
Confidence 76554344567899999999999999999999999944 3433222211 11 36889999999999998776
Q ss_pred CeEEEEec--CCceeecc--------------------CCCCCCCCCEEEEEEeeCCCEEEEEeCCC--------eEEEE
Q 001159 996 SQISVYDS--KLECSRSW--------------------SPKDALPAPISSAIYSCDGLLVYAGFCDG--------AIGVF 1045 (1135)
Q Consensus 996 ~~v~vwd~--~~~~~~~~--------------------~~~~~h~~~i~~~~~s~d~~~l~~~~~dg--------~I~vw 1045 (1135)
+.-++|.+ .++..... ....--.+++.+++|.|.|.+||+.-..+ .|..|
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f 380 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF 380 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence 77777776 22221111 00011146788999999999999865433 36777
Q ss_pred ECCCceeeeeeCCceeccccccCCCCccEEEEecC--CCCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP--SEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
|....-.+.-.-. +. ...-++-.++|+| .++.+|..+=..|.+.-+.+.
T Consensus 381 dtr~sp~vels~c------g~-i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 381 DTRKSPPVELSYC------GM-IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccccCceEEEec------cc-ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 7765433221110 00 0112233444544 566788888888888877764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-11 Score=141.27 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=189.8
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC--cceEEEEEcCCCCeEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~spd~~~la 424 (1135)
++++++++-. +++|| ++.-.|.+||+..+..+.. + .....+..|. +.+.. .+-+++
T Consensus 8 ~~l~~~~~~~--~~lla--g~gp~i~~yd~~s~~li~~--~-----------~~~~~~~~H~~e~~~~l-----~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA--GSGPEILVYDLSSGCLIRH--L-----------IQSKILEVHRGEGKVKL-----LSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee--cCCCceEEeeCCchhHhhh--h-----------hhhccccccccccccee-----ccceEE
Confidence 3555566555 45554 3355899999998876542 1 1111233340 00100 123444
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe-e-E
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV-Y-S 502 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~-~ 502 (1135)
++..-+.+..=+..-. .+..-...|....+..+.+ .++.+..+..+-+||...+.....+....... . +
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 4433333332222111 1112233455556666677 67777778899999988887776665332211 1 1
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE-
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 581 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 581 (1135)
+.+--..+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 11222223378999999999999998855555578999999999999999999999985 8899999999988776
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+.-+|.. .+..++|.|+ .+++++.|.+.++|+.+ ++.+..+..|... .+..++..++...+++++.|+.+++|+.
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5667777 7888999987 99999999999999765 4555577766543 6899999999999999999999999997
Q ss_pred CCC
Q 001159 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
...
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-13 Score=130.53 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=172.1
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC--CEEEEEEecCCCeEEEEEEcC-----CCcEEEE
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTCGD-----DKMIKVW 482 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~--~v~~v~~s~d~~~~~l~s~~~-----d~~i~iw 482 (1135)
...+++|+.|...+++|..+| .+||+.+.-+... ..+.+.+ .+..|-| ..+.+.|+-|+. ...|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 345599999999999998888 8999987633221 1111222 2333333 233223333332 2589999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc-CCCceeEecCC--CCcEEEEEEcCCCCEEEEE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAP--GNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~ 559 (1135)
|=...+++.++. ...+|.++.+.++ .|+. -..+.|.+|.+. +.+....+... .....+++-+.+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 966778888775 6789999998663 3443 357899999887 44444444332 2234444444444455544
Q ss_pred ecCCCCCCeEEEEECCCCeE--EEEeecccCCceeEEEecCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCcc
Q 001159 560 GTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
| -+.|+|.+-|+...+. ...+..|.. .|.|++++-+|..++++|..|+ |||||..+|+.+..+........|+
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 4 3578999999986555 467788887 9999999999999999998887 7999999999999998766667899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++|||+..+||++++.|++.||.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-09 Score=127.02 Aligned_cols=537 Identities=10% Similarity=0.089 Sum_probs=298.8
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEE----EeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
...+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .|+..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999999 444422 22 2233466899999999999 6666666777776
Q ss_pred EEcCCC------------------------eeeeeecCCCC------------------Ce----eEEEeeccCCccEEE
Q 001159 482 WDVVAG------------------------RKQYTFEGHEA------------------PV----YSVCPHHKESIQFIF 515 (1135)
Q Consensus 482 wd~~~~------------------------~~~~~~~~h~~------------------~v----~~i~~~~~~~~~~l~ 515 (1135)
.+ ++. +....|.|..+ .+ ..+.++..+||.+++
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 54 211 11112221110 01 223344467889999
Q ss_pred EEEc---C---CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc---
Q 001159 516 STAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF--- 586 (1135)
Q Consensus 516 s~s~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--- 586 (1135)
+.+. . ..+|+|+-+ +.....-..-.+--.+++|-|.|++|++... ..+...|.+|. ++|-.-..|...
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 8875 2 579999754 3322222222333457899999999998764 23345677776 445544444432
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
....|..+.|++|+..|+..-.|. |.+|...+.. +.+.+..... ..+..+.|+| +...|...+.+|.+..++..-
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 344789999999999999977655 9999998865 3344443332 2355699999 555677777778887766532
Q ss_pred CchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 001159 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
....-..... .|...++.-+
T Consensus 381 ~v~~s~~~~~------------------------------------------------------------~D~g~vaVID 400 (928)
T PF04762_consen 381 DVSRSPGSSP------------------------------------------------------------NDNGTVAVID 400 (928)
T ss_pred EEEecCCCCc------------------------------------------------------------cCceEEEEEe
Confidence 1000000000 0111111222
Q ss_pred cccccccccCCcCCccce--eEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCee
Q 001159 744 VDKIKSWRIPDISDPSQI--KALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 821 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
..++.+-.+.....+... ..+.+ ...| ..++|++++..+++...||.+.+|.+...............
T Consensus 401 G~~lllTpf~~a~VPPPMs~~~l~~-----~~~v-~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~---- 470 (928)
T PF04762_consen 401 GNKLLLTPFRRAVVPPPMSSYELEL-----PSPV-NDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLS---- 470 (928)
T ss_pred CCeEEEecccccCCCchHhceEEcC-----CCCc-EEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhh----
Confidence 234444444433322222 23332 3456 99999999988999999999999987654322110100000
Q ss_pred ecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-C---CeEEEEECCCcc---EEEEEeCCCCCeEEEEEecCC
Q 001159 822 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-d---g~i~vwd~~~~~---~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
.............. . ...+..++|..+..+++... + ..+.++++...+ .+.....-...+..+...+ .
T Consensus 471 -~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 545 (928)
T PF04762_consen 471 -SISLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-D 545 (928)
T ss_pred -hccccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-C
Confidence 00000000000000 1 56678899988888777766 3 468888875332 2333333344555555555 4
Q ss_pred CcEEEEEeCCCcEEEEEccccee-eEEecCcCCCeEEEEEcCCCC---eEEEEcCCCcEEEEeCCCCceeceeeeecCCC
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 970 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 970 (1135)
...++.-..+|.+...+...... +..|..-.. -..+....+.. .++.-+..+.+++ .+.. +.
T Consensus 546 ~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~-~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~-----la---- 611 (928)
T PF04762_consen 546 SGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCP-WMEVCQINGSEDKRVLFGLSSNGRLYA----NSRL-----LA---- 611 (928)
T ss_pred CcEEEEEECCCEEEEeecCCCccccccCCCCCc-EEEEEEECCccceeEEEEECCCCEEEE----CCEE-----Ee----
Confidence 44466677899998776554322 122332211 22233222322 3444444444432 1111 11
Q ss_pred CCCCCCCceEEEECCCCcEEEE-EecCeEEEEecC--CceeeccCCCCC--CCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 971 RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK--LECSRSWSPKDA--LPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 971 ~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~--~~~~~~~~~~~~--h~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
..+++.+++ +.+|+. .....+++.++. ...+........ +...++ --..|..|+++-....=.|.
T Consensus 612 -----~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R---~VERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 612 -----SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCR---RVERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred -----cCCceEEEE--cCEEEEEecCceEEEEECcCchhhcccccCccccccccccc---cCccCCEEEEEeCCCceEEE
Confidence 234555553 444444 667778888875 111111100000 011122 22567888887666566678
Q ss_pred ECCCceee
Q 001159 1046 DAETLRFR 1053 (1135)
Q Consensus 1046 d~~~~~~~ 1053 (1135)
.+..|.+-
T Consensus 682 QmPRGNLE 689 (928)
T PF04762_consen 682 QMPRGNLE 689 (928)
T ss_pred EcCCCchh
Confidence 88877654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=134.07 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=182.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~- 485 (1135)
-..+|+|.+|++|+..+|++.....|.||............++..|...|+.++|+|... .|++|+.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998887777789999999999999999998 79999999999999983
Q ss_pred CCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee----EecCCCCcEEEEEEcCCCCEEEEE
Q 001159 486 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 486 ~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.++ +...+..++...+++.|+|.+ +.+++||.-..|.+|-++....-. .-....+.|.++.|+|++-+|++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 333 334556689999999999977 799999999999999887655432 234456689999999999999998
Q ss_pred ecCCCCCCeEEEEECC-----C-------------CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 560 GTSKEGESHLVEWNES-----E-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~-----~-------------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+. |+..+++..- + |+++..+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 6777777531 1 23334443 233479999999999999999999999999987654
Q ss_pred -eEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
.+....... -+..++.|-.+...+ .++.|
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~vv-~ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSVV-AAGYD 269 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCcee-ecCCC
Confidence 333333221 255667776555443 34444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-12 Score=148.13 Aligned_cols=237 Identities=11% Similarity=0.108 Sum_probs=158.6
Q ss_pred eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceeee
Q 001159 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~ 446 (1135)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence 78888887654321 3346678999999999999987643 457999999886532 2
Q ss_pred eEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCeE
Q 001159 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKI 523 (1135)
Q Consensus 447 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i 523 (1135)
+....+.+..++|+|||+. ++++.+.++ .|++||+.+++.. .+..+...+....|+|++ +.|+..+. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCC--CEEEEEeCCCCCc
Confidence 2223334557899999995 233334444 5999999887654 444455567888998865 77766665 4455
Q ss_pred EEE--eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC
Q 001159 524 KAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 524 ~iw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
.+| |+.++.. ..+...........|+|||++|+..+.. ++...|++||+.++... .+.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCC
Confidence 555 5554433 3344444456678999999999876642 23567999999888654 333221 234578999999
Q ss_pred EEEEEeCCCe---EEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 602 RFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 602 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
.|+.++.++. +++++++ +.....+..+.. .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999886654 6777874 555555654433 577788887
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=149.08 Aligned_cols=279 Identities=15% Similarity=0.173 Sum_probs=216.6
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
.....+.|+.+|++ ++.|+..|.|..+|..++...... .-...|.++.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh
Confidence 35678999999996 556778999999999998765421 133568899999999999988
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
....++|||-.. ..++ .+..| ..|..+.|.|--- +|++++..|.++.-|+.+|+.+..+....+.+..++-+
T Consensus 189 -QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 -QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred -hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 456699999764 4444 33333 4689999999765 89999999999999999999999999889999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.+ ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+++++.|. |..++|||++....+.++...
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC
Confidence 876 78999999999999999999999999999999999999999999999986 888999999988877777662
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEE-CCCC--ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWD-MDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
. ....+++|..| +++++....|.||. .-.+ ..-..+-.|.-...|..+.|.|-...|-+|...|.-.|.=.-.
T Consensus 335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2 56778888655 44555556899994 2221 1111122222234789999999877888877766655553333
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
|
T Consensus 411 G 411 (545)
T KOG1272|consen 411 G 411 (545)
T ss_pred C
Confidence 3
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-13 Score=139.64 Aligned_cols=252 Identities=10% Similarity=0.122 Sum_probs=169.1
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE-----cCCCCe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-----GPDGLM 422 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----spd~~~ 422 (1135)
.+....++-.|++|++-- ...+.+|++..+..+.. ++....+.+.. -.|=+| .|.+--
T Consensus 125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt~--P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGTS--PTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCCC--CceecccccccCCCCcc
Confidence 566666777787766543 34789999886544331 22333333322 222233 456778
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEee--cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
|.+|-.-|.|.+.|....+ +....... -.+..|+|+.|-|.+.. .++.+-.+|.++++|.. +....
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8899999999999977632 22111111 12468999999998776 56777789999999961 11122
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
+...+.+-.++..+.....-+. .+...+..+......|...+|+|||++|++.+. |+.++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 2222222223333332211110 111233334444558999999999999999985 999999999998888
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
..++..-+ ...|++|+|||++|++|++|..|.||.+...+.+..-.+| ...|+.|+|.
T Consensus 326 g~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 326 GVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFD 383 (636)
T ss_pred HHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeec
Confidence 77777666 7999999999999999999999999999998888776655 4589999998
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-14 Score=146.36 Aligned_cols=231 Identities=15% Similarity=0.180 Sum_probs=193.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
-.-..+.++.+|++|+.|+..|.|-.+|..++.... ++. -...|.++.|..+.+ ++|.+ ..+.++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence 346789999999999999999999999999976544 333 244699999999887 56555 477999999 8899
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..|+-+|-+..+-.|.. +|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 99988754 578999999876 67888999999999999999999888888888999999998877777764 899
Q ss_pred EEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
|.+|.....+++..+-+|.+ +|.++++.++|.+++++|.|..++|||++....+.++... .....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-cee
Confidence 99999999999999999988 9999999999999999999999999999998877666542 256788898776 444
Q ss_pred EEECCCcEEEEE
Q 001159 649 VTTSDNGIKILA 660 (1135)
Q Consensus 649 ~~~~dg~i~iwd 660 (1135)
.+ ....+.||.
T Consensus 350 ~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 350 LS-YGDHVQIWK 360 (545)
T ss_pred ee-cCCeeeeeh
Confidence 44 344899994
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=141.33 Aligned_cols=210 Identities=19% Similarity=0.234 Sum_probs=146.0
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCc-ceeEecccceeeeEEecccc--CCCCCcccc-
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGL-SLLALASNAVHKLWKWQRTE--RNPSGKATA- 815 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~-~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~- 815 (1135)
+.-..+.+.+.+.... ...+.+..........+ +++.|-|.+. .+++...+|.+.+||..... ..+.-....
T Consensus 190 IGf~tGqvq~idp~~~---~~sklfne~r~i~ktsv-T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 190 IGFTTGQVQLIDPINF---EVSKLFNEERLINKSSV-TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred EeeccCceEEecchhh---HHHHhhhhcccccccce-EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 3333477777665431 11122222223344677 9999998554 45566669999999763311 111100000
Q ss_pred --cccCeeecCCCC-cceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEe
Q 001159 816 --NVAPQLWQPPSG-TLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 891 (1135)
Q Consensus 816 --~~~~~~~~~~~~-~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s 891 (1135)
.+.+..|-.... ..+..-..+ ...|...+|||||++||+.+ ||.+||||..+.+++...+..-+...|++||
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~----~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIG----EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred CCeeEEeeeeccccCCccceeEec----cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 011111111111 111111112 66888999999999999999 9999999999999888888778899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC-----------------------------------C
Q 001159 892 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-----------------------------------T 936 (1135)
Q Consensus 892 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-----------------------------------d 936 (1135)
| ||++|++|++|-.|.||.+...+.+..-.+|..-|+.|+|.| +
T Consensus 342 P-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~ 420 (636)
T KOG2394|consen 342 P-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAE 420 (636)
T ss_pred C-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcC
Confidence 9 999999999999999999999999999999999999999983 0
Q ss_pred C-------------CeEEEEcCCCcEEEEeCCCCc
Q 001159 937 L-------------NALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 937 ~-------------~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
+ -++.+++.|..+.+||+....
T Consensus 421 ~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 421 GCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CCcccccccccceEEEeecccccceEEEEecchhh
Confidence 1 257789999999999998755
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-12 Score=144.38 Aligned_cols=237 Identities=10% Similarity=0.026 Sum_probs=161.8
Q ss_pred ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceee
Q 001159 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1135)
Q Consensus 369 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~ 445 (1135)
..|.+||..+..... +..|...+.+.+|||||+.|+..+. +..|.+||+.++...
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888886543221 4567889999999999999998764 468999999887542
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CC-
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG- 521 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg- 521 (1135)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+|++ ..|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCC
Confidence 34556677889999999995 3445665654 77789887764 4566666667778898865 66766653 33
Q ss_pred -eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 522 -KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 522 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
.|.+||+..+.. ..+......+....|+|||+.|+..... .+...|.+||+.++.. +.+... . .+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence 577778765443 3333344556778899999999877632 2345799999865543 333322 1 45678999999
Q ss_pred CEEEEEeCC------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 601 NRFLAAGDE------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 601 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
+.|+..+.+ ..++++|+..+.. ..+... ..+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence 998875532 3688888876554 344321 1356667766
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=147.06 Aligned_cols=238 Identities=9% Similarity=0.025 Sum_probs=155.0
Q ss_pred CccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhc
Q 001159 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|..|...........+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 3455555444444444457778999999999996655432 24579999998875432 1
Q ss_pred cCCCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC-CCc--
Q 001159 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKM-- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-d~~-- 478 (1135)
....+.+..++|||||+.|+.. +.+| .|++||+++++.. .+..+...+....|+|||+ .|+..+. ++.
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 1122334568999999998875 3344 5889999886533 3344555678999999999 4554443 444
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
|.++|+.++.. ..+..+........|+|++ +.|+..+.+ ..|.+||+.++... .+.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCE
Confidence 44556666543 3444444455677888755 677665543 35888998876543 3332 223346789999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
|+..+.++ +...+.++++ +|...+.+.++.+ .+...+|+|
T Consensus 388 i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 99887532 2445788887 4666667776655 677788886
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-12 Score=130.37 Aligned_cols=272 Identities=11% Similarity=0.134 Sum_probs=193.6
Q ss_pred CCCeeEEEEecCCCeEEEEEe-ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGT-NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
...|..++|--+++.=+..+. .+..+............. .|++.. ......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 347788888777654333343 566666666665544322 122211 22345566666553 33677
Q ss_pred EEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCC--CcEEEEEcCCCeeeeeecC------
Q 001159 425 VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 495 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~------ 495 (1135)
+|-.+|.+.+|..+.+..- .....+..+ ..+..|.-++...+ ++++||.. ..+.+||++..+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7889999999999854311 111123323 45777777777665 67789998 8999999998866554321
Q ss_pred -CC--CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 496 -HE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 -h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
-. -.++++.|.+..+...|++++.-+.+++||.+..+. +..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 12 235567787775558999999999999999987654 4577888899999999999999999854 778999
Q ss_pred EECCCCeEEEE-eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
+|.+.++.... +.+..+ .++++..+|.+++++++|-|..|||+|+.+.+++....... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666666 89999999999999999999999999999977776654432 245555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=125.37 Aligned_cols=516 Identities=11% Similarity=0.120 Sum_probs=305.8
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.-+++. |...|.-+.|+.+.+. |.++..+|.|.||-+-.|.... .++-...++.|.+++|+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~E-----------------EMiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCE-----------------EMINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHH-----------------HHhhCcCccEEEEEEEc
Confidence 356676 9999999999999884 7888999999999998876432 22233467789999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-------ee
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-------KQ 490 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-------~~ 490 (1135)
.||..++....||.|.+=.++..+.... .+.+. -...+.|++|.+ .++.+-.+|.++++|.+..- +.
T Consensus 125 ~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 125 LDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred CCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 9999999999999999988887654332 22222 245789999998 56777788999999954321 11
Q ss_pred ee----ecCCCCCeeEEEeecc------CCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 491 YT----FEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 491 ~~----~~~h~~~v~~i~~~~~------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.. +......|..+.|... ++...++.+-.+|.+.+-.-.+......+... -.+....|+++|..|+++|
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEcc
Confidence 11 1112223555655421 24478999999999998866655555544433 6788999999999999998
Q ss_pred cCCCC----C-CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 561 TSKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 561 ~~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
.+.+. + +.|..+. .-|+.+.+++.... .|++++|-..|-.++.+ .|+.|++=+++..-....+..
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~------- 347 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE------- 347 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee-------
Confidence 64432 2 2455555 45888888887766 89999999877666665 578898877764333222221
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 715 (1135)
.+.|--.+.- .-.-.|.+||..+....++...+...-. .
T Consensus 348 -TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~a-~----------------------------------- 386 (1189)
T KOG2041|consen 348 -TVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENMA-F----------------------------------- 386 (1189)
T ss_pred -EEEEEEccCC----CcceEEEEEecccChhhhhhhcceeehh-e-----------------------------------
Confidence 1111110100 0122578899988866665554321110 0
Q ss_pred CCCCccccccccCCCCccccccccccc-ccccccccc-cCCcCCccceeEeecCC---cccccceEEEEEEecCCcceeE
Q 001159 716 GPPAVSISSLGTIDGSRLVDVKPRVAE-DVDKIKSWR-IPDISDPSQIKALRLPD---SIAASKVVVRLIYTNSGLSLLA 790 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~iw~-~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~s~dg~~l~~ 790 (1135)
..+.-.++.. .++.+.-+. +.+....-.+..-...+ ...-..| ...-..-++..++.
T Consensus 387 -----------------~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdi-rP~Fv~vn~~~vvi 448 (1189)
T KOG2041|consen 387 -----------------YREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDI-RPKFVCVNGICVVI 448 (1189)
T ss_pred -----------------ecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCccee-eeeEEEecceEEEE
Confidence 0000011111 112222110 00000000000000001 0111112 22222334554444
Q ss_pred ecccceeeeEEeccccCCCCCcccccc---cCeeecCCCC----ccee--ccCCCCCCCCCceEEEEeecCCCEEEEEe-
Q 001159 791 LASNAVHKLWKWQRTERNPSGKATANV---APQLWQPPSG----TLMT--NDINESKPTEESAACIALSKNDSYVMSAS- 860 (1135)
Q Consensus 791 ~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~--~~~~~~~h~~~~i~~l~~s~dg~~la~~~- 860 (1135)
.+ ...+.+|.....+.......+... ...+=|..+| .+-. ..+.| - ..+|.+++.+ .+++.++.
T Consensus 449 AS-~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G--~-~DpICAl~~s--dk~l~vare 522 (1189)
T KOG2041|consen 449 AS-EERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLG--S-KDPICALCIS--DKFLMVARE 522 (1189)
T ss_pred ec-cccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeecc--C-CCcceeeeec--ceEEEEEec
Confidence 44 446788987654322111110000 0001111222 0000 11122 2 6788888774 47888887
Q ss_pred CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc---cceeeE-EecCcCCCeEEEEEcCC
Q 001159 861 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---VDEVKT-KLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 861 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~---~~~~~~-~l~~h~~~i~~l~~s~d 936 (1135)
.|.|.-+.+.+..+..... -+..|..+++.- +...+|.-..-|.+.+.|+. +|..+. -++.....|+++.|..|
T Consensus 523 SG~I~rySl~nv~l~n~y~-~n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~d 600 (1189)
T KOG2041|consen 523 SGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQD 600 (1189)
T ss_pred cCceEEEEecceeeeeccc-cCchheeEeecc-CcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccC
Confidence 7999999998876655543 455788888887 77888888888999998886 333333 34445567999999888
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001159 937 LNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~ 956 (1135)
...|..--....+.|++-..
T Consensus 601 Np~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 601 NPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred CchHHhhhhhceEEEecCcC
Confidence 76655544444566665443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-12 Score=145.50 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=147.3
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.. .+....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3567789999999999999987643 46999999987543 23334456678999999994 3346677887666
Q ss_pred EEcC-CCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 482 WDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
|.+. .+.....+..+.+.+....|+|++ +.|+..+ .+|...+|.++.. .....+..........+|+|||++|+.
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEE
Confidence 6543 233355666666666778898865 6666555 4567777765432 222223333334456789999999987
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC---eEEEEECCCCceEEEEeCCCCCCCc
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
.+.. .+...|++||+.+++....... . ......|+|||+.|+.++.++ .+++.++. +.....+..+.+ .+
T Consensus 345 ~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g--~~ 417 (427)
T PRK02889 345 ISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGG--DV 417 (427)
T ss_pred EEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCC--CC
Confidence 6532 2245799999988875543322 1 335688999999998876443 35566663 555555554322 46
Q ss_pred ceEEEcC
Q 001159 636 PRLRFNK 642 (1135)
Q Consensus 636 ~~~~~~~ 642 (1135)
...+|+|
T Consensus 418 ~~p~wsp 424 (427)
T PRK02889 418 REPSWGP 424 (427)
T ss_pred CCCccCC
Confidence 6677776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=146.98 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=158.7
Q ss_pred ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceee
Q 001159 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1135)
Q Consensus 369 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~ 445 (1135)
..|.+||...+.... +..+...+.+.+|+|||+.|+.++. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543221 3456778999999999999998874 346999999887542
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCe
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK 522 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~ 522 (1135)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+|++ ..|+.++ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCC
Confidence 23344455668899999995 334555555 699999988774 4555566566778898854 6776665 4555
Q ss_pred --EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 523 --IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 523 --i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|.++|+.+++. ..+..........+|+|||++|+.... .++...|.+||+.+++.. .+... . ......|+|||
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCC
Confidence 55566655443 233333444557899999999987653 223457999999888765 33321 1 23457899999
Q ss_pred CEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 601 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 601 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
++++..+. .+.|+++++.. .....+..+.+ .+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccCCC--CCCCCccCC
Confidence 98887664 34688888864 44455543322 456677776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-12 Score=146.22 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=152.3
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhh
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
...+|..|.........+.+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3455555554444444455778899999999999655544333 369999998886432
Q ss_pred ccCCCcceEEEEEcCCCCeEEE-EeCCCeEEEEEe--CCCCceeeeeEeecccCCEEEEEEecCCCeEEEE-EEcCCCcE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las-~~~dg~i~iwd~--~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~-s~~~d~~i 479 (1135)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+...+....|+|||+. |+ +...++..
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~ 308 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAP 308 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCc
Confidence 2223345678999999998875 566777666655 4433 22 34455556678899999995 44 34445666
Q ss_pred EEEEc--CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 480 KVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 480 ~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
.+|.+ .++.. ..+..+........|+|++ ++|+..+.++ .|.+||+.+++... +.. ........|+|||+
T Consensus 309 ~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~ 383 (427)
T PRK02889 309 QIYRMPASGGAA-QRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGR 383 (427)
T ss_pred EEEEEECCCCce-EEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCC
Confidence 66654 44443 2222222334456787754 7887766554 69999998766443 322 23346789999999
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.|+..+.. .+...+++.+. +|...+.+..+.+ .+...+|+|
T Consensus 384 ~l~~~~~~-~g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 384 YILYATQQ-GGRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEEec-CCCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 99987743 23456777777 4666666654443 566677776
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-11 Score=117.58 Aligned_cols=239 Identities=10% Similarity=0.099 Sum_probs=164.5
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE-E
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-A 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las-~ 426 (1135)
....++|+.|.. -+++|. |.-.+||+++.-++..++.+ +.+.+.-+..---.++||. |
T Consensus 7 ~~lsvs~NQD~S-cFava~-~~Gfriyn~~P~ke~~~r~~-------------------~~~G~~~veMLfR~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVAT-DTGFRIYNCDPFKESASRQF-------------------IDGGFKIVEMLFRSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEEe-cCceEEEecCchhhhhhhcc-------------------ccCchhhhhHhhhhceEEEec
Confidence 455699999987 566665 55689999886444322111 1111111111112334444 3
Q ss_pred eCC------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeeeecCCCCC
Q 001159 427 FSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAP 499 (1135)
Q Consensus 427 ~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~ 499 (1135)
+.+ ..+.|||=...+++. ++ ....+|.++.+.++ .|+..- ++.|.||... +.+.++.+.....|
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 322 469999954444333 44 35678999999876 455554 6689999987 56666666543322
Q ss_pred eeEEEeeccCCccEEEE-EEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 500 VYSVCPHHKESIQFIFS-TAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
=--++..|..+..+|+. |-.-|.|++-|+..... ...+.+|...|.|++.+-+|..+|+++. +..-|++||..+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~ 213 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTED 213 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCC
Confidence 22233344444344444 34569999999987666 5788999999999999999999999985 344589999999
Q ss_pred CeEEEEeecc-cCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 577 GAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 577 ~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+.+..++.. ....|.+++|||+..+|+++|+.|++.|+.++.
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999998743 334699999999999999999999999998875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=146.39 Aligned_cols=237 Identities=12% Similarity=0.111 Sum_probs=153.4
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec--cceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++.+|...........+...+.+++|||||+.++.+... ...|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 3455554444444445577889999999999965544322 3479999998876432 22
Q ss_pred CCCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCCc--E
Q 001159 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~~--i 479 (1135)
...+...+++|||||+.|+.. +.+| .|++||+.+++.. .+..+.......+|+|||+ .|+..+ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 233445678999999988654 4555 5999999887532 3445555567899999999 455444 4444 6
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
+++|+.+++.. .+..+.......+|+|++ +.|+..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~-~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAE-RLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 66777666543 333233445567888755 6776655433 6999998776544 333 22244567899999998
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
+..+.. .+...|++++.. +...+.+..+.+ .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877643 345679999885 445555554433 556667765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=142.35 Aligned_cols=238 Identities=11% Similarity=0.176 Sum_probs=165.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|.+-|+|++|+.+|. +|++|+.|-.+.|||.-..+.++. +-.||...|.++.|-| +.+.
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCeE
Confidence 899999999999998 899999999999999987666543 3468999999999999 5678
Q ss_pred EEEEeCCCeEEEEEeCCCC-------ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee------
Q 001159 423 LGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------ 489 (1135)
+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.++++||+|+-+|++....
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999998521 12233356679999999999999965 899999999999999986321
Q ss_pred -ee---eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-----ecCCCCcEEEEE-EcCCCCEEEEE
Q 001159 490 -QY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMA-YSADGTRLFSC 559 (1135)
Q Consensus 490 -~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~-~s~~~~~l~~~ 559 (1135)
.. .+...--...++.++|... .+|+.|+.|--.++||.+....... .........|+. |+|.+- .
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----k 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----K 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----c
Confidence 11 1111223466888888865 7999999999999999643222110 000111111221 122111 0
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
. .+ |...... ..++-++|+|+|..|++.-....|+++|+..++....+
T Consensus 264 n----~~----------gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 N----SQ----------GNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred C----cc----------cccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 01 1000000 13566889999987777655668999999987765544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=127.96 Aligned_cols=344 Identities=13% Similarity=0.242 Sum_probs=217.1
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEEC-CCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.++.++|+.+ .++....-|..+-+++.+.|.++++|-- +.++.-..+... ...+++++.+.++...|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceEE
Confidence 4566778777 6777777777888999999999999954 445544444332 234688999999999999999999988
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
-+.+..........+
T Consensus 94 efs~sedfnkm~~~r----------------------------------------------------------------- 108 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLK----------------------------------------------------------------- 108 (404)
T ss_pred EEEhhhhhhhcchhh-----------------------------------------------------------------
Confidence 876643311110000
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 817 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 817 (1135)
.| ..|...+ ..+.|+-.-.++++.+.|..+. |...
T Consensus 109 -----------~~------------------~~h~~~v-~~~if~~~~e~V~s~~~dk~~~-~hc~-------------- 143 (404)
T KOG1409|consen 109 -----------DY------------------LAHQARV-SAIVFSLTHEWVLSTGKDKQFA-WHCT-------------- 143 (404)
T ss_pred -----------hh------------------hhhhcce-eeEEecCCceeEEEeccccceE-EEee--------------
Confidence 00 0145555 7777877777788888776554 3221
Q ss_pred cCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEEC--CCccEEEEEeCCCCCeEEEEEecCC
Q 001159 818 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM--MTFKVMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
+.+..+..... ....+++.+.-. +...|. .|.|.+-.+ ....++.++.+|.+.+.+++|.| .
T Consensus 144 -------e~~~~lg~Y~~-----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~ 208 (404)
T KOG1409|consen 144 -------ESGNRLGGYNF-----ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-G 208 (404)
T ss_pred -------ccCCcccceEe-----eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-C
Confidence 11111000000 011111111111 444444 455555443 45678899999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEccccee-eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC----
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---- 969 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---- 969 (1135)
..+|.+|..|..|.+||+-..+- ..++.+|.+.|..+..-+.-+.|++++.||.|.+|+++.........+..-.
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c 288 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC 288 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh
Confidence 89999999999999999986543 4578899999999999999999999999999999999864432221111000
Q ss_pred --------------------CCC--CCCCCceEEEECCCCcEEEEEecCeEEEEecCCceee-----ccCCCCCCCCCEE
Q 001159 970 --------------------GRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSR-----SWSPKDALPAPIS 1022 (1135)
Q Consensus 970 --------------------~~~--~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~-----~~~~~~~h~~~i~ 1022 (1135)
-|. .....|...+-+....+...+..-.+|+-|.-...+. .+...+.-...|+
T Consensus 289 ~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgIt 368 (404)
T KOG1409|consen 289 NQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGIT 368 (404)
T ss_pred CchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccccccee
Confidence 000 0001222222222222333344555666655111111 1222222245789
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1023 SAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1023 ~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+|.+..+-.+|+|++.|..|+|||+..
T Consensus 369 amhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 369 AMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEhhhhccceeecCCceEEEEEechh
Confidence 999999989999999999999999875
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-08 Score=120.66 Aligned_cols=516 Identities=14% Similarity=0.164 Sum_probs=287.6
Q ss_pred cceEEEEEcCCCCeEEEEeC--CC--eEEEEEeCCCCceeeeeEee-----cccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 409 ISVNRCVWGPDGLMLGVAFS--KH--IVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~--dg--~i~iwd~~~~~~~~~~~~l~-----~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
..+...+|.+....+.++.. .. .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777778776654444333 22 34444443333222222332 2346799999999998 57777788889
Q ss_pred EEE----EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc---------------C--------CC
Q 001159 480 KVW----DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---------------Y--------LG 532 (1135)
Q Consensus 480 ~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~---------------~--------~~ 532 (1135)
.+. +..+... .....-...|.+++|+|+. ..|+..+.++++.+-+-+ . ++
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 988 5443322 2222346789999999976 788888888888776321 0 00
Q ss_pred ceeEecC------------------------CCCcEEEEEEcCCCCEEEEEecCCC-C-CCeEEEEECCCCeEEEEeecc
Q 001159 533 SRVDYDA------------------------PGNWCTMMAYSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 533 ~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
....+.+ ....-..++|-.||.++++.+.+.. + ...|++|+-+ |.+..+-..-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0001100 1224457889999999998775332 2 4789999955 7655444422
Q ss_pred cCCceeEEEecCCCCEEEEEeC---CCeEEEEECCCCceEEEEeCC--CCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.+ --.+++|-|.|+.|++... ...|.+|.-+ |-.-..+... .....|..+.|++|+..||....| .|.+|-.
T Consensus 256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~ 332 (928)
T PF04762_consen 256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTR 332 (928)
T ss_pred CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEe
Confidence 22 3457899999999998753 4567777654 3333333332 233478999999999999998866 4999987
Q ss_pred CCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccc
Q 001159 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1135)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1135)
.+-.-.++.--
T Consensus 333 ~NYHWYLKqei--------------------------------------------------------------------- 343 (928)
T PF04762_consen 333 SNYHWYLKQEI--------------------------------------------------------------------- 343 (928)
T ss_pred eCCEEEEEEEE---------------------------------------------------------------------
Confidence 65411111000
Q ss_pred cccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC-CcceeEecccceeeeEEeccccCCCCCcccccccCe
Q 001159 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 742 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
..+ ....+ ..+.|+|. ...|.+.+.+|.+..+++.
T Consensus 344 -----------------------~~~---~~~~~-~~~~Wdpe~p~~L~v~t~~g~~~~~~~~----------------- 379 (928)
T PF04762_consen 344 -----------------------RFS---SSESV-NFVKWDPEKPLRLHVLTSNGQYEIYDFA----------------- 379 (928)
T ss_pred -----------------------Ecc---CCCCC-CceEECCCCCCEEEEEecCCcEEEEEEE-----------------
Confidence 000 00111 33556653 2335555555666665542
Q ss_pred eecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEEEEEeCCeEEEEECCCccE-----EEEEeCCCCCeEEEEEecCC
Q 001159 821 LWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~la~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~ 894 (1135)
|+...+.. .+| |...+++.+..++.+-.+...-. ...+. -...|.+++|++ +
T Consensus 380 -~~v~~s~~-------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~ 437 (928)
T PF04762_consen 380 -WDVSRSPG-------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-S 437 (928)
T ss_pred -EEEEecCC-------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-C
Confidence 11111100 011 22334444455666666554311 12333 346899999999 6
Q ss_pred CcEEEEEeCCCcEEEEEcccceee--------EEec----------CcCCCeEEEEEcCCCCeEEEEcCC---CcEEEEe
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEVK--------TKLK----------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWS 953 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~~--------~~l~----------~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iwd 953 (1135)
+..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.+++
T Consensus 438 ~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 438 NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEE
Confidence 767899999999999986543211 1111 123457889998888777766654 5788888
Q ss_pred CCCCcee-ceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceee--ccCCCCCCCCCEEEEEEeeC
Q 001159 954 IDKWEKL-KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR--SWSPKDALPAPISSAIYSCD 1029 (1135)
Q Consensus 954 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~~~~s~d 1029 (1135)
+...+.. ......... ..+..+...++...++. ..+|.+..++..+.... .+.. ..+-..++...+
T Consensus 518 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~----~c~~~~~~~~~~ 587 (928)
T PF04762_consen 518 IDDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ----PCPWMEVCQING 587 (928)
T ss_pred eccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC----CCcEEEEEEECC
Confidence 7543311 111111111 23444444555543444 77888887766333222 2211 222233333333
Q ss_pred CC---EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1030 GL---LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1030 ~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.. .++.-+..|.+++ ++..++. ... ++..+ +.+|+.......+++.++.
T Consensus 588 ~~~~~~~~GLs~~~~Ly~----n~~~la~--------------~~t--SF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYA----NSRLLAS--------------NCT--SFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ccceeEEEEECCCCEEEE----CCEEEec--------------CCc--eEEEE---cCEEEEEecCceEEEEECc
Confidence 33 3333344455543 3333321 122 33333 2466666777889999998
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-11 Score=125.01 Aligned_cols=281 Identities=9% Similarity=0.100 Sum_probs=185.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
.+.+..++|++|+ ++|.+ .+..|.|++..++..+.+ .....+.++.|||-|.+|.+=
T Consensus 35 ~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeecccccccccc
Confidence 4577889999998 66654 477999999988753321 122268999999999999872
Q ss_pred -----eC-----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 427 -----FS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 427 -----~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
.. .-.+.+|++.++. .+. .+..-...-++..|+.|.. ++.--..+.+++|++.+.+.+. -.-|
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~-~~s--~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~ 164 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGV-QRS--QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS 164 (566)
T ss_pred cccccccCCCCCCCceeeeeeccce-ehh--heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence 11 2347899999842 221 2222222226899999886 4444446689999987743322 1236
Q ss_pred CCCeeEEEeeccCCccEEEE-----EEcCCeEEEEeCcCCCceeE---ecCCCCcEEEEEEcCCCCEEE-EEecC-----
Q 001159 497 EAPVYSVCPHHKESIQFIFS-----TAIDGKIKAWLYDYLGSRVD---YDAPGNWCTMMAYSADGTRLF-SCGTS----- 562 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~-~~~~~----- 562 (1135)
...|+.+.++|.+.-..+++ .+.-..+++|.+.....-.. .......-..+.|++-|.-|+ .++.+
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77899999998854345544 35567799997762221111 111112334677888777544 33321
Q ss_pred --CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCcceE
Q 001159 563 --KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 563 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
.-++.+++++++...... ......++|.++.|+++++.+++ |-.-..+.|+|++ ++++..+... +=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~--V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVS--VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEE--EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccce
Confidence 124567888888733333 33333448999999999987766 4577889999987 5666655422 45889
Q ss_pred EEcCCCCEEEEEEC---CCcEEEEEcCCC
Q 001159 639 RFNKEGSLLAVTTS---DNGIKILANSDG 664 (1135)
Q Consensus 639 ~~~~~~~~l~~~~~---dg~i~iwd~~~~ 664 (1135)
-|+|.|++++.++- .|.|.|||+.+.
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch
Confidence 99999999998887 478999999875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=129.84 Aligned_cols=318 Identities=12% Similarity=0.185 Sum_probs=210.4
Q ss_pred cceeeecCCCCCCccc------cCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec-----------cceEEEEEcC
Q 001159 315 SDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVG 377 (1135)
Q Consensus 315 ~~~v~~s~~g~~~~~~------~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~-----------dg~i~iwd~~ 377 (1135)
-.-|.|||-|.+++.+ .|.+.....++.+.|. .|.-+.|||+.+ +|+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcc
Confidence 3448899999988775 3445556667777776 699999999998 5666532 2479999999
Q ss_pred CccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEE
Q 001159 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~ 457 (1135)
+|...+. |.+ +.+....-.-+.||.|++++|--..+ .|.||+..+-..+... .+ .-..|.
T Consensus 291 tG~lkrs--F~~--------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~K-sl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRS--FPV--------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKK-SL--KISGIR 350 (698)
T ss_pred ccchhcc--eec--------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccc-cc--CCcccc
Confidence 9987764 221 11122222347899999999987775 4999998764332211 11 234688
Q ss_pred EEEEecCCCeEEEEEEcC-----CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEE----------EcCCe
Q 001159 458 DIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGK 522 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~ 522 (1135)
...|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|+.- +.-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 999999987 6664332 2356677777777776655443 444455555566777543 12223
Q ss_pred EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-C---eEEEEeecccCCceeEEEecC
Q 001159 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 523 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
+.|+.++..........-...|...+|-|.|+.+++.+.. +...++.+|.+++ . +++..+.. ...+.+.|+|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsP 502 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSP 502 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcC
Confidence 5666666555544444445578899999999988866532 3466788888773 2 23344433 2567899999
Q ss_pred CCCEEEEE---eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC------CCcEEEEEcCCC
Q 001159 599 TRNRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1135)
Q Consensus 599 ~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 664 (1135)
.|++++.+ |..|.+.++|........+- ...+. ..+.+.|.|.|+++++++. |...+||+.+..
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc-Ccccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99999875 46789999998853322221 11222 4578999999999999876 566788887654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-10 Score=115.99 Aligned_cols=281 Identities=11% Similarity=0.128 Sum_probs=183.7
Q ss_pred cccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEeccc---ceeeeEEeccccCCCCCcccccccCe
Q 001159 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
+..|.+|++++.... .....+ ......+ +-++++|+++.|.++..+ |.|.-|.+
T Consensus 15 s~gI~v~~ld~~~g~--l~~~~~--v~~~~np-tyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------ 71 (346)
T COG2706 15 SQGIYVFNLDTKTGE--LSLLQL--VAELGNP-TYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------ 71 (346)
T ss_pred CCceEEEEEeCcccc--cchhhh--ccccCCC-ceEEECCCCCEEEEEEecCCcCcEEEEEE------------------
Confidence 467889988742211 111111 1134455 889999999988887654 66666654
Q ss_pred eecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCC-ccEEEE--EeCCCCC----------e
Q 001159 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA----------A 885 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~--~~~h~~~----------v 885 (1135)
|..+|.+........ . ..+.+.++++++|++|+++. .|.|.++-+.. |.+... ...|.+. +
T Consensus 72 --D~~~G~Lt~ln~~~~-~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 72 --DPDDGRLTFLNRQTL-P-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred --cCCCCeEEEeecccc-C-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcc
Confidence 334343222111100 1 33448899999999999998 69999999965 443222 2225444 8
Q ss_pred EEEEEecCCCcEEEEEeC-CCcEEEEEcccceeeEE----ecCcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCCCC--
Q 001159 886 TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTK----LKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW-- 957 (1135)
Q Consensus 886 ~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~----l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~~~-- 957 (1135)
.+..|.| ++++|++.+- --.|.+|++..|++... + .-....+.|+|+|++++..... -+++|.+|..+..
T Consensus 148 H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 148 HSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred ceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 8999999 8988888753 23699999998764322 2 2345678999999999877766 5899999999874
Q ss_pred ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe--cCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEE
Q 001159 958 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l 1033 (1135)
+......+..+............+..++||++|.++. ...|.+|.+ .+..+........+...-+.+.|+++|++|
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 2211112222222222235667899999999999974 457888888 444444433333335556889999999999
Q ss_pred EEEeCCC-eEEEEECC--Cceee
Q 001159 1034 YAGFCDG-AIGVFDAE--TLRFR 1053 (1135)
Q Consensus 1034 ~~~~~dg-~I~vwd~~--~~~~~ 1053 (1135)
+++..|+ .|.+|.++ ||++-
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 306 IAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEEccCCCcEEEEEEcCCCceEE
Confidence 9888764 58888776 44443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-10 Score=119.27 Aligned_cols=359 Identities=12% Similarity=0.142 Sum_probs=225.4
Q ss_pred EEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEE
Q 001159 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 603 (1135)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|.-..+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 3454444444444444566888999999999999865 345999998877655555432 68889999999999
Q ss_pred EEEeCCC---------------eEEEEECCCCceEEEEeCCCCCCCcc-eEEEcCCCCEEEEEECCCcEEEEEcCCCchh
Q 001159 604 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1135)
Q Consensus 604 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 667 (1135)
.+-+..+ .+.+||..++..+..+.........+ -+.|+-+.+++|-.. ...+.|+++ ++..
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~- 163 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNI- 163 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCcc-
Confidence 9865433 49999999999998887664431233 688888888777553 347888887 3311
Q ss_pred hhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccc
Q 001159 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1135)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1135)
..++.... +
T Consensus 164 ----~~~p~~~l--------------r----------------------------------------------------- 172 (561)
T COG5354 164 ----EEHPFKNL--------------R----------------------------------------------------- 172 (561)
T ss_pred ----ccCchhhc--------------c-----------------------------------------------------
Confidence 11111000 0
Q ss_pred cccccCCcCCccceeEeecCCcccccceEEEEEEecCCc--ceeE-----ecccceeeeEEeccccCCCCCcccccccCe
Q 001159 748 KSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 748 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
...| ....++|.|. .|+. .+..+.+++|.+..+
T Consensus 173 ------------------------~~gi-~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~--------------- 212 (561)
T COG5354 173 ------------------------PVGI-LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN--------------- 212 (561)
T ss_pred ------------------------ccce-eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------------
Confidence 0111 3333333321 1111 122445555554321
Q ss_pred eecCCCCcceec-cCCCCCCCCCceEEEEeecCCCEEEEEe------------CCeEEEEECCCccEEEEEeCCCCCeEE
Q 001159 821 LWQPPSGTLMTN-DINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATF 887 (1135)
Q Consensus 821 ~~~~~~~~~~~~-~~~~~~h~~~~i~~l~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~h~~~v~~ 887 (1135)
..+.. .+. .-.-..+.|.+.|++++.-- ...+.|+++....+ .....-.++|..
T Consensus 213 -------s~l~tk~lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhd 279 (561)
T COG5354 213 -------SVLVTKNLF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHD 279 (561)
T ss_pred -------CeeeeeeeE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceecccccccee
Confidence 11110 000 11122455666666654321 24588999874433 333356789999
Q ss_pred EEEecCCCcEEEEE--eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC---CcEEEEeCCCCceece
Q 001159 888 LAFHPQDNNIIAIG--MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 888 l~~sp~~~~~lasg--~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iwd~~~~~~~~~ 962 (1135)
++|.| .++.+++. -.+..+-++|+... .... .....=..+.|||.+++++.++-| |.|-+||........
T Consensus 280 f~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~- 354 (561)
T COG5354 280 FTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA- 354 (561)
T ss_pred eeecc-cCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEE-
Confidence 99999 56555554 46788999998865 3333 334445678899999999998876 679999988755332
Q ss_pred eeeecCCCCCCCCCCceEEEECCCCcEEEEE-------ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEE
Q 001159 963 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYA 1035 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~ 1035 (1135)
....+ .....+.|+||++++.+. -|..|.|||+.+..+. ..+.+.|.|.|++.-+
T Consensus 355 ---~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~tt 416 (561)
T COG5354 355 ---GAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTT 416 (561)
T ss_pred ---EEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCccccee
Confidence 22332 234677899999998873 3788999999666543 3466788888888777
Q ss_pred EeCCC
Q 001159 1036 GFCDG 1040 (1135)
Q Consensus 1036 ~~~dg 1040 (1135)
.+.+.
T Consensus 417 sSs~~ 421 (561)
T COG5354 417 SSSCP 421 (561)
T ss_pred eccCC
Confidence 76654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-10 Score=120.39 Aligned_cols=334 Identities=12% Similarity=0.118 Sum_probs=206.9
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE-----eCC-----Ce
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-----GDE-----FQ 611 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-----~~d-----g~ 611 (1135)
......+++++|++++.+. +..+.|++..++..+.+.... .+..+-|+|.|.+|.+- ..+ -.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCCc
Confidence 3467788999999999875 667999999888644333332 46889999999988762 122 34
Q ss_pred EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCc
Q 001159 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+.+|++.++.....+...... -++..|+.|..+.+-- ..+.+.+|++.+-......+
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl-------------------- 163 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKL-------------------- 163 (566)
T ss_pred eeeeeeccceehhheehhhhc--Ccccccccchhhhhhh-hcceEEEEecCCccceeeee--------------------
Confidence 779999986665555543332 2578888887654432 34578888876531111111
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
|
T Consensus 164 -------------------------------------------------------------------------------~ 164 (566)
T KOG2315|consen 164 -------------------------------------------------------------------------------S 164 (566)
T ss_pred -------------------------------------------------------------------------------e
Confidence 1
Q ss_pred ccceEEEEEEecCCc--ceeE-----ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCce
Q 001159 772 ASKVVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 844 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i 844 (1135)
...| +.+.+||.+. .+++ .+.-+.++||.+.....+.... ....+ ...-
T Consensus 165 ~~~i-~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a-----------------~ksFF------kadk 220 (566)
T KOG2315|consen 165 VSGI-TMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA-----------------NKSFF------KADK 220 (566)
T ss_pred ccce-eeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh-----------------hcccc------ccce
Confidence 2222 4444444321 1111 1233567777654221111000 00000 1122
Q ss_pred EEEEeecCCCEE---EEEe-C---------CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEE--EeCCCcEEE
Q 001159 845 ACIALSKNDSYV---MSAS-G---------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI--GMEDSSVQI 909 (1135)
Q Consensus 845 ~~l~~s~dg~~l---a~~~-d---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~las--g~~dg~v~i 909 (1135)
..+.|.+-|.-| ++.. | .++++.+++...+...+. -.++|.++.|+| .++-+++ |-.-..+.|
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTI 298 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEE
Confidence 234555544421 2222 3 358888888444444443 578999999999 6755544 445678999
Q ss_pred EEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC---CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 910 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 910 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
||++ +.++..+ -.++-.++-|+|.|++++.+|-+ |.|-|||+.+.+.+.. ... ..-+-+.|+||
T Consensus 299 fnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~-----~~a-----~~tt~~eW~Pd 365 (566)
T KOG2315|consen 299 FNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK-----FKA-----ANTTVFEWSPD 365 (566)
T ss_pred EcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc-----ccc-----CCceEEEEcCC
Confidence 9986 5555555 45777899999999999988855 7899999999664332 221 33478899999
Q ss_pred CcEEEEE-------ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEee
Q 001159 987 QTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1028 (1135)
Q Consensus 987 g~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~ 1028 (1135)
|++++++ -|+.++||+.+|..+...... .+...+.|-|
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~----sEL~qv~W~P 410 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFK----SELLQVEWRP 410 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecCceeehhhhh----HhHhheeeee
Confidence 9999984 288999999988877654332 1466677765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-11 Score=126.04 Aligned_cols=202 Identities=20% Similarity=0.243 Sum_probs=133.0
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCc
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~ 529 (1135)
.|...-+.|..+|||++ +++||...-.|++||+..-.. .|..|. ..+..+....+ |-..++.-..|.+|.+-..
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEccccee--eeeecccccceeEEEecc-chhhheEeecCceeeehhh-
Confidence 47778899999999998 789999999999999876543 333342 23333322211 2234444455666654421
Q ss_pred CCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC
Q 001159 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 530 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d 609 (1135)
.+.-..+..+ ..-..++++.-.--|++++. ...|+-+++..|..+..|..... .++++..++....|++|+.+
T Consensus 124 -~G~hy~~RIP-~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 124 -YGRHYRTRIP-KFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTED 196 (703)
T ss_pred -cCeeeeeecC-cCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEecccC
Confidence 1111111111 11123444433333443332 44599999999999998887766 89999999999999999999
Q ss_pred CeEEEEECCCCceEEEEeCCCC---------CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 610 FQIKFWDMDNMNMLTTVDADGG---------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|.|.+||.+....+.++....+ ...|+++.|+.+|-.+++|+.+|.+.|||+++.
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 9999999998877776653322 234677777777777777777777777777655
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-10 Score=125.43 Aligned_cols=254 Identities=18% Similarity=0.204 Sum_probs=161.2
Q ss_pred EEEEEecCCcceeEecc----cceeeeEEeccccCCCCCcccccccCeeecCCCCcc--eeccCCCCCCCCCceEEEEee
Q 001159 777 VRLIYTNSGLSLLALAS----NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL--MTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~~i~~l~~s 850 (1135)
..++++|++++|.+... +|.|..|++... ++.+ +...... ......++++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~--------------------~g~L~~~~~~~~~----g~~p~~i~~~ 95 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD--------------------TGTLTLLNSVPSG----GSSPCHIAVD 95 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT--------------------TTEEEEEEEEEES----SSCEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCC--------------------cceeEEeeeeccC----CCCcEEEEEe
Confidence 66788999998888866 467777766431 1211 1111101 4556789999
Q ss_pred cCCCEEEEEe--CCeEEEEECCC-ccEEEE---Ee----------CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcc
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMT-FKVMTM---FM----------SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVR 913 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~ 913 (1135)
|++++|+++. +|.|.++++.. +.+... +. .......++.|+| +++++++... ...|++|++.
T Consensus 96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-
T ss_pred cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEe
Confidence 9999999997 79999999986 443332 21 1234578999999 8887777643 4579999997
Q ss_pred cce--ee--EEec-CcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCC--CCceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 914 VDE--VK--TKLK-GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID--KWEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 914 ~~~--~~--~~l~-~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
... +. ..+. ........++|+||++++.... .+++|.++++. .+.......+...............++++|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 654 21 2222 3445689999999999876554 57789999988 443222222222211111112578899999
Q ss_pred CCcEEEEE--ecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEEC--CCceeeee
Q 001159 986 DQTHLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDA--ETLRFRCR 1055 (1135)
Q Consensus 986 dg~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~--~~~~~~~~ 1055 (1135)
||++|.++ ..+.|.+|++ ....+.............+.++|+|||++|+++. .++.|.+|++ ++|.+...
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 99999996 4678999999 2222222111111134578999999999998876 5668999876 57765543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=138.41 Aligned_cols=239 Identities=11% Similarity=0.024 Sum_probs=156.7
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhh
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
...+|..|...........+...+.+.+|||||++++.+.. .+..|.+||+.+++...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 34566666555555555568889999999999996555442 24689999998876432
Q ss_pred ccCCCcceEEEEEcCCCCeEEEE-eCCCe--EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CC--C
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD--K 477 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d--~ 477 (1135)
+..+.+.+.+.+|||||+.|+.. +.++. |.+||+.++... .+..+........|+|||+. |+..+ .+ .
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~ 314 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSP 314 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCC
Confidence 33455677889999999988654 45554 777788876432 35556666778999999994 44444 33 3
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
.|++||+.++.. ..+..+...+....|+|++ +.|+..+.+ ..|.+||+..... ..+.. ...+..+.|+|||+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC
Confidence 688889766554 4444445566778888865 677766543 3578888755433 33322 23567889999999
Q ss_pred EEEEEecCCCCC--CeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 555 RLFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 555 ~l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.|+..+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 998765422221 4688889876554 34432 22 355566665
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-11 Score=119.16 Aligned_cols=262 Identities=11% Similarity=0.172 Sum_probs=177.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecc---cccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI---SAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
..+-|.++.|..+|. +||+|..+|.|.++.-+.... . .+..+.. ..+...... --.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCC
Confidence 345799999999998 799999999999997553322 0 1111100 000000000 011346799999999765
Q ss_pred --eEEEEeCCCeEEEEEeCCCCcee--------------------------------eee-EeecccCCEEEEEEecCCC
Q 001159 422 --MLGVAFSKHIVHLYTYNPTGELR--------------------------------QHL-EIDAHVGGVNDIAFAHPNK 466 (1135)
Q Consensus 422 --~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~-~l~~h~~~v~~v~~s~d~~ 466 (1135)
.++..+.|.+|++|.+....... +.. --.+|..-|.++.++.|+.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 56777899999999885422110 000 1236888899999999998
Q ss_pred eEEEEEEcCCCcEEEEEcCCCeeee---eecCC-----CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-----
Q 001159 467 QLCIVTCGDDKMIKVWDVVAGRKQY---TFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----- 533 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h-----~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----- 533 (1135)
.++++. |=.|-+|+++--..-. .++.+ ..-|++..|||... +.++-.+..|+|++.|++....
T Consensus 178 --t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 178 --TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred --eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchh
Confidence 677765 7789999987432211 22222 34588889999854 7888889999999999984221
Q ss_pred -eeEec----------CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccC-----------Cc
Q 001159 534 -RVDYD----------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRK-----------RS 590 (1135)
Q Consensus 534 -~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~-----------~~ 590 (1135)
..... .--..|..+.|+.+|+++++-. -.+|.+||+. ..+++.++..|.. ..
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 11111 1112678999999999999863 4689999994 5677777766642 12
Q ss_pred e---eEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 591 L---GVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 591 v---~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
| ..++|+.++.++++|+....++++++..|.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2 347899999999999999999999965543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-10 Score=119.72 Aligned_cols=314 Identities=10% Similarity=0.073 Sum_probs=206.9
Q ss_pred CcceeeecCCCCCCccccC------CCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccc---------------eEE
Q 001159 314 QSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 372 (1135)
Q Consensus 314 ~~~~v~~s~~g~~~~~~~~------d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg---------------~i~ 372 (1135)
++..+.+||.|.+++.... +......+..+.|. .|..+.|||.++ +|.+=+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 4556888888888776532 33333345555565 699999999998 677765443 488
Q ss_pred EEEcCCccccccCCceeecccccccchhhhhccCCCcc--eE-EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEe
Q 001159 373 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI 449 (1135)
Q Consensus 373 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l 449 (1135)
+||..+|..+... .+-..+ .. -+.|+-+.+++|-. ....++|+++...-.......+
T Consensus 112 vwd~~sg~iv~sf-------------------~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 112 VWDIASGMIVFSF-------------------NGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred EEeccCceeEeec-------------------cccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc
Confidence 9999988776542 122222 33 57899999988766 3345999997332222222222
Q ss_pred ecccCCEEEEEEecCCCeEEEEE-----EcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE------
Q 001159 450 DAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------ 518 (1135)
Q Consensus 450 ~~h~~~v~~v~~s~d~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s------ 518 (1135)
. ...|....|+|.+..-.|+. .+.++++++|.+..+..+.+-.-....-..+.|++.+ ++++.--
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ks 247 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKS 247 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeec
Confidence 2 35688999999855423442 4678899999998776665433222223345565554 4433221
Q ss_pred -----cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeE
Q 001159 519 -----IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1135)
Q Consensus 519 -----~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1135)
....+.++++......... ...++|...+|.|.++.+++++. -....+.++|++.. +...+... .-..
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rNT 320 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRNT 320 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---cccc
Confidence 2345788888754444443 55779999999999998887753 24667889998855 44333332 3355
Q ss_pred EEecCCCCEEEEEeCC---CeEEEEECCCCceEE-EEeCCCCCCCcceEEEcCCCCEEEEEEC------CCcEEEEEcCC
Q 001159 594 VQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 663 (1135)
Q Consensus 594 i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~ 663 (1135)
+.|+|.+++++.++-| |.+-+||........ .+.+. ...-+.|+||++++.+... |..+.||++..
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 7899999999998754 789999988755444 55543 2466789999999887743 78899999865
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 5
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-10 Score=114.88 Aligned_cols=193 Identities=14% Similarity=0.272 Sum_probs=124.0
Q ss_pred cCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-----eeeeecCCC------------CCeeEEEeeccCCccEEE
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~~~~l~ 515 (1135)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|.+..+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34689999999999 89999999999999743221 122344443 458888999988888999
Q ss_pred EEEcCCeEEEEeCcCCCcee-----EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc
Q 001159 516 STAIDGKIKAWLYDYLGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
....|++|++|.+....... ........++++..- +.+.. +-.+ ...+.+.+...+...
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~----~~~v------ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRH----DLEV------EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccc----ccee------eeeeeeeccccceeE
Confidence 99999999999887654433 111111222222210 00000 0000 122344554444447
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCCce---EEEEeCCC---CCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCC
Q 001159 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM---LTTVDADG---GLPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 591 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
|+++.++.|+..++++ .|=.|.+|++.--.. +.-++.+. -...|++..|+| .-++++-.++.|+|++-|++.
T Consensus 167 iNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 9999999999998887 567899999874221 11122111 012478889999 456788888899999999864
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 246 ~ 246 (433)
T KOG1354|consen 246 S 246 (433)
T ss_pred h
Confidence 4
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=121.56 Aligned_cols=250 Identities=10% Similarity=0.137 Sum_probs=183.6
Q ss_pred CCcceEEEEEcCCCC--eEEEEeCCCeEEEEEeCCCCceeee---eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 407 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~--~las~~~dg~i~iwd~~~~~~~~~~---~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
....|..++|.-|++ .|...+.+..+....+......... .......++|..++.. |+ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 446688888887665 4444446666777777665433221 1223455677777765 34 5889999999999
Q ss_pred EEcCCCe----eeeeecCCCCCeeEEEeeccCCccEEEEEEcC--CeEEEEeCcCCCceeEecCC---------CCcEEE
Q 001159 482 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAP---------GNWCTM 546 (1135)
Q Consensus 482 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~---------~~~i~~ 546 (1135)
|....+. .+..+..+ ..+..+.-++... ..+++|+.. ..+.+||++..+.+..-... .-+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 33344333 4455565554432 577779998 88999999987555433222 126788
Q ss_pred EEEcCC--CCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 547 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 547 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+.|-+. ...+++++. -+++++||.+.++ ++..|..... +++++...|+++++++|..-|.+..+|++.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999887 788888864 8899999999764 6677776655 8999999999999999999999999999999888
Q ss_pred EE-EeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 624 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 ~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
.. +.+-. +.|.++..+|.++++++++-|..+||+|+.+...+.+
T Consensus 283 g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 283 GCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 77 55543 3799999999999999999999999999999633333
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9e-11 Score=133.14 Aligned_cols=244 Identities=10% Similarity=0.055 Sum_probs=151.7
Q ss_pred CccccCCCcceeeEEeecCCCCeeEEEEecCCCe--EEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~--lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
..+|..|....+..........+...+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 3455555544544444445667788999999975 333554444 67777888775432
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeC-CC----eEEEEEeCCCC--ceeeeeEeecccCCEEEEEEecCCCeEEEEE-Ec
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFS-KH----IVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CG 474 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~-dg----~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s-~~ 474 (1135)
+....+.....+|||||+.||..+. +| .+.+|++..+. ..+. ...++.......+|+|||+. |+. ..
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~ 300 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSN 300 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEEC
Confidence 2223344567899999999988653 22 34447776532 2221 22223334567899999995 443 34
Q ss_pred CCCcEEEE--EcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 475 DDKMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 475 ~d~~i~iw--d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
.++...+| ++.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++... +......+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~ 377 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPS 377 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceE
Confidence 56655555 4432 33345555555667788898865 677665543 469999998776543 333334567889
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|+|||+.|+..... .+...|+++|+.+++....... .+ .+...+|+|-.
T Consensus 378 wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~-~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVIG-SG-EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecC-CC-cccCceecCCC
Confidence 99999998865532 3467899999988776544432 22 45667787643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-09 Score=109.69 Aligned_cols=254 Identities=14% Similarity=0.186 Sum_probs=171.4
Q ss_pred CCceEEEEeecCCCEEEEEe----CCeEEEEECCC--ccEE--EEEeCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001159 841 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKVM--TMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYN 911 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~----dg~i~vwd~~~--~~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd 911 (1135)
...++-++++|++++|.++. +|.|.-|.++. |++. ........+-+.+++++ ++++|+++.. -|.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 67788999999999988885 36788777764 4442 22222333448899999 8999988875 58999999
Q ss_pred ccc-ceeeE--EecCcCCC----------eEEEEEcCCCCeEEEEc--CCCcEEEEeCCCCceeceeeeecCCCCCCCCC
Q 001159 912 VRV-DEVKT--KLKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 976 (1135)
Q Consensus 912 ~~~-~~~~~--~l~~h~~~----------i~~l~~s~d~~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+.. |.+.. .+..|.+. +-...|.|++++|++.+ .|+ |.+|+++.+........... ...
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~-----~G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVK-----PGA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccC-----CCC
Confidence 865 43221 12235554 77889999999999885 454 99999997764443333332 226
Q ss_pred CceEEEECCCCcEEEEE--ecCeEEEEecCC--ceeeccCCC------CCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEE
Q 001159 977 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSPK------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1045 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~------~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vw 1045 (1135)
+..+++|+|++++..+. -+++|.+|..+. ..+..+... -.-.....++.+++||++|.++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 77999999999998884 489999999832 333222211 111445678899999999988753 3468888
Q ss_pred ECCCc-eeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC-cEEEEecCCCccccCC
Q 001159 1046 DAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1046 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~v~~W~~~~~~~~~~~ 1109 (1135)
.++.. ..+..+.. ..++...|....+.| +|++|+++++|+ .|.++......+.+..
T Consensus 272 ~V~~~~g~L~~~~~-------~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 272 SVDPDGGKLELVGI-------TPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEcCCCCEEEEEEE-------eccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 87643 11221111 113335577888888 678888888876 6899988766654443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-11 Score=119.02 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=91.3
Q ss_pred CCceEEEEeecCCCEEEEEe---CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~ 914 (1135)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++|+.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999877653 5789999996 66666664 56788999999 89999998754 6799999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 956 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iwd~~~ 956 (1135)
.+.+.... |. .++.++|||||++++++.. |..++||+...
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 88887765 33 4789999999999999874 78899999864
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-10 Score=126.71 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=141.7
Q ss_pred CCCcceEEEEEcCCCCeEE---EEeCC--CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC----C
Q 001159 406 DAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D 476 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~la---s~~~d--g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d 476 (1135)
.....+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+.+ +++... |
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~d 256 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPD 256 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCcc
Confidence 3455677889999998633 33333 358888888775432 33344456678999999952 333322 3
Q ss_pred CcEEEEEcCCC---eeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeC--cC-CCceeEecCCCCcEEEEEE
Q 001159 477 KMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLY--DY-LGSRVDYDAPGNWCTMMAY 549 (1135)
Q Consensus 477 ~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~--~~-~~~~~~~~~~~~~i~~~~~ 549 (1135)
-.+.+|++..+ .......++.+.....+|+|++ +.|+..+ .+|...+|.+ .. ......+......+....|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 34455777653 3222332333445677888865 6666555 5676566644 32 2234445555556778899
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe---CCCeEEEEECCCCceEEEE
Q 001159 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|||+.|+..+.. ++...|++||+.+++....... .. .+....|+|||+.|+... ....|+++|+..++.....
T Consensus 335 SPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 9999999877642 3456899999998876543332 22 467789999999887643 2457889999887755444
Q ss_pred eCCCCCCCcceEEEcCCC
Q 001159 627 DADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~ 644 (1135)
... ..+...+|+|-.
T Consensus 412 ~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGS---GEKRFPSWGAFP 426 (428)
T ss_pred cCC---CcccCceecCCC
Confidence 322 235667887743
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-10 Score=132.37 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=148.0
Q ss_pred cccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
++..|.........+.+...+...+|||||++++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444544444444556778899999999999766655433 368999998875432 122
Q ss_pred CCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~i 481 (1135)
..+.+...+|||||+.|+.. +.+| .|++||+.++... .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 23345578999999988854 4444 6888899886532 34455556777899999995 233333333 5777
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
+|+.+++... +...........|+|++ +.++..+. ++ .|.+||+.+++... +.. ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEE
Confidence 8887776433 22122233456787755 66666554 33 57888988765433 222 122235689999999987
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.+.. .+...|++++.. |...+.+..+.+ .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 335568888875 444444543333 456666765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=116.02 Aligned_cols=164 Identities=18% Similarity=0.317 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCeEEEEeC----------CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 411 VNRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~----------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
-..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346889999998877433 2346666664432222211222 34579999999999975566677788999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+||++ ++.+..+. ...++.+.|+|.+ ++|++++. .|.|.+||+++.+.+.... ...++.++|+|||++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEE
Confidence 99986 66666664 5678899999865 88988874 4679999999666555443 33578999999999999
Q ss_pred EEecC--CCCCCeEEEEECCCCeEEEEe
Q 001159 558 SCGTS--KEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 558 ~~~~~--~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
++... ...+..++||+.. |+.+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEec
Confidence 88642 1236678999974 6655443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-10 Score=128.99 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=141.8
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--E
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--I 479 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~--i 479 (1135)
..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++. |
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 3466788999999999999887543 358899998865321 2222333457899999995 3344555664 7
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCe--EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
++||+.+++. ..+..+.......+|+|++ +.++..+ .++. |.++|+.+++.. .+..........+|+|||++|
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7888877764 4455565666778898865 5565544 3444 555666655433 233233334457899999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC-CC--eEEEEECCCCceEEEEeCCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..+.. .+...|.++|+.++.... +.... ......|+|||+.|+..+. ++ .+++++.+ +.....+.....
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC--
Confidence 876542 234468888988876533 32221 1224579999998877553 33 47777874 555555654322
Q ss_pred CcceEEEcC
Q 001159 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~~~ 642 (1135)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 456777776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.2e-10 Score=128.05 Aligned_cols=222 Identities=12% Similarity=0.082 Sum_probs=143.1
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cE
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i 479 (1135)
..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887643 369999998875432 2233444567899999995 333555454 68
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
++||+.+++. ..+..+........|+|++ +.++..+ .+| .|.++|+.+++... +...........|+|||++|
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889888764 3455566666677888765 5555544 344 46677776655332 22223334467899999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC---CeEEEEECCCCceEEEEeCCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..... ++...|.+||+.+++........ ......|+|||+.++..+.+ ..++++++.. .....+.... .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--C
Confidence 877642 23456999999887653322221 22346899999998876643 3577777754 3333444322 2
Q ss_pred CcceEEEcC
Q 001159 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~~~ 642 (1135)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667766
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-10 Score=132.01 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=143.7
Q ss_pred ccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccCC
Q 001159 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 330 ~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+..|.........+.+...+.+..|||||++++.+...++ .|.+||+.+++... +...
T Consensus 201 ~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~ 260 (448)
T PRK04792 201 MIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSF 260 (448)
T ss_pred EEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCC
Confidence 3333333333334456778999999999997666554443 68888988775422 1111
Q ss_pred CcceEEEEEcCCCCeEEEE-eCCCe--EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEEE
Q 001159 408 AISVNRCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVW 482 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~iw 482 (1135)
.+.....+|||||+.|+.. +.+|. |++||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++
T Consensus 261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRV 335 (448)
T ss_pred CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEE
Confidence 2234468999999988764 55664 777888876432 34445556778999999995 233443344 56667
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCe--EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
|+.+++... +..........+|+|++ ++++..+. ++. |.++|+.++.... +... .......|+|||+.|+..
T Consensus 336 dl~~g~~~~-Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 336 NLASGKVSR-LTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYS 410 (448)
T ss_pred ECCCCCEEE-EecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEE
Confidence 777776433 32222223456787765 56655544 443 5556766654432 2222 122345799999999876
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.. .++...+++++. +|...+.+..+.+ .+...+|+|
T Consensus 411 ~~-~~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 411 TT-YQGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred Ee-cCCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 64 233456888886 5666666665443 566677776
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-09 Score=114.66 Aligned_cols=246 Identities=15% Similarity=0.182 Sum_probs=163.9
Q ss_pred cceEEEEEcCCCCeEEEEeC----CCeEEEEEeCCC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 409 ISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~----dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
.....++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|+|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEE
Confidence 34667899999999999876 578999999875 444444344334455678999999995 444555699999999
Q ss_pred cCC-Ceeeee---ec----------CCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCcCCCc-e---eEe-cCCCCc
Q 001159 484 VVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS-R---VDY-DAPGNW 543 (1135)
Q Consensus 484 ~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~-~---~~~-~~~~~~ 543 (1135)
+.. |..... +. .......++.++|++ +++++.. ....|.+|+++.... + ..+ ...+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 986 443322 21 123456788888865 6666554 456799999987662 1 122 234557
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECC--CCeE--EEEeecc----cC-CceeEEEecCCCCEEEEEe-CCCeEE
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQIK 613 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~----~~-~~v~~i~~s~~~~~l~~~~-~dg~i~ 613 (1135)
...++|+|+++++++... ..+.|.++++. ++.. +..+... .. .....+.++|||++|+++. ..+.|.
T Consensus 194 PRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 889999999999988763 47788888887 4432 2333221 11 1467799999999988865 667899
Q ss_pred EEECCC--Cc--eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 001159 614 FWDMDN--MN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 614 iwd~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 662 (1135)
+|+++. ++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999942 33 3333333222 4689999999999998874 6789999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-09 Score=114.42 Aligned_cols=112 Identities=14% Similarity=0.249 Sum_probs=84.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-----------CCCe
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-----------DEFQ 611 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-----------~dg~ 611 (1135)
.-+-+.|||-|.||++-. ..-|.+|--.+...++.|.. . .|.-+.|||+.++|++-+ +...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~H-p--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFYH-P--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhccC-C--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 446789999999999986 33489998666666655542 2 588899999999999855 2257
Q ss_pred EEEEECCCCceEEEEeCCCC-CCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 612 IKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++|||+.+|.....+..... ...-.-..||.|++++|.-..+ .|.|++...
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps 335 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS 335 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc
Confidence 99999999998888865322 2234567899999999987774 788887643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-09 Score=112.06 Aligned_cols=240 Identities=11% Similarity=0.044 Sum_probs=151.3
Q ss_pred eecCCCEEEEEe-----------CCeEEEEECCCccEEEEEeCCCC-------CeEEEEEecCCCcEEEEEe-C-CCcEE
Q 001159 849 LSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 908 (1135)
Q Consensus 849 ~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~~lasg~-~-dg~v~ 908 (1135)
+||||+.+.++. ++.|.+||+.+++.+..+.-... ....++++| ||++|++.. . +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999877663 36799999999999998874322 235799999 888888765 4 78999
Q ss_pred EEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECC-CC
Q 001159 909 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 987 (1135)
Q Consensus 909 iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg 987 (1135)
+.|+.+++.+.++.-- +...-...+.+. .++- +.||......++..............+.... . ...-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~~-~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~-v-~~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVP-DCYHIFPTANDT-FFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY-L-INHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCC-CCcEEEEecCCc-cEEE-eecCceEEEEecCCCceEEeeeeeecCCccc-c-ccCCceEcCCC
Confidence 9999999998887642 222222222222 2222 2344444433332221111111111110000 0 00114455 99
Q ss_pred cEEEEEecCeEEEEecCCc------eeeccCCCC----CCCCCEEEEEEeeCCCEEEEEe----------CCCeEEEEEC
Q 001159 988 THLLVVHESQISVYDSKLE------CSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1047 (1135)
Q Consensus 988 ~~l~~~~d~~v~vwd~~~~------~~~~~~~~~----~h~~~i~~~~~s~d~~~l~~~~----------~dg~I~vwd~ 1047 (1135)
+++.++..|.|.+.|+.+. ....+.... -....+.-+++++|+++++++. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 9999987899999996221 111111110 0133344599999999988743 2257999999
Q ss_pred CCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEEecCCCccc
Q 001159 1048 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAELK 1106 (1135)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W~~~~~~~~ 1106 (1135)
.+++.+.++... ..+..+.++| |++ +|.+.. .++.|.+.|+.+++..
T Consensus 287 ~t~kvi~~i~vG-----------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 287 KTGKRLRKIELG-----------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCeEEEEEeCC-----------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999999987743 3456788999 666 666555 6788999999888743
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-09 Score=126.77 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=140.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--c
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~ 478 (1135)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34466678999999999999988654 47999999887533 23345666778999999985 334555444 6
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
|++||+.++.. ..+..+........|+|+ |+.|+..+. ++ .|.++|+.+.+. ..+..+...+..+.|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECCC--CCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 88999887754 344445555566788774 467766554 33 577777765543 344445566778899999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC---eEEEEECCCCceEEEEe
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 627 (1135)
++.+..+. +...|.+||+.++... .+.... ......|+|++++|+..+.++ .+++.+.. ++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99876422 2447999999876543 232221 234568999999988876543 45555544 44444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-10 Score=128.71 Aligned_cols=225 Identities=13% Similarity=0.090 Sum_probs=144.5
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++..|.........+.+...+...+|||||++++++...+ ..|.+||+.+++... +.
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~ 230 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VA 230 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------ee
Confidence 34444444444444455777899999999999655443322 479999998875432 22
Q ss_pred CCCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCC--cE
Q 001159 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--MI 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~--~i 479 (1135)
.+.+.+.+++|+|||+.|+.. +.++ .|++||+.++... .+..+........|+|||+. |+..+ .++ .|
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~i 304 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQI 304 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceE
Confidence 344567789999999988754 4343 5888898876432 33445555567899999994 44433 333 58
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
.++|+.+++. ..+..+...+..+.|+|++ .+++.++.++ .|.+||+.+.... .+... .......|+|||+.|
T Consensus 305 y~~d~~~~~~-~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l 379 (417)
T TIGR02800 305 YMMDADGGEV-RRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMI 379 (417)
T ss_pred EEEECCCCCE-EEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEE
Confidence 8888777654 3444455667778888754 7788777765 7888988774432 22222 233456899999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+..... ++...+++.+.. +.....+..
T Consensus 380 ~~~~~~-~~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 380 LYATTR-GGRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEeC-CCcEEEEEEECC-CceeeECCC
Confidence 887643 223456666643 444454543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-10 Score=118.44 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=156.1
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe------c------------CCCeEEEEEEcCCCc
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKM 478 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s------~------------d~~~~~l~s~~~d~~ 478 (1135)
.|...++|....||.+++||...++....+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567799999999999999999876544322222234445555553 1 122237889999999
Q ss_pred EEEEEcCCCeeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 479 IKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
|.++++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+................+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888886 599999999986654 789999999999999999888888888888899999999999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC-----CCEEEE-EeCCCeEEEEECCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
++++ ++|.+||+++++.+..|.||.. .|+++.|..+ |.++++ ...+..+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9884 4799999999999999999998 9999999876 677776 34556677887654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-08 Score=108.56 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=168.6
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEe---------ccceEEEEEcCCccccccCCceeecccccccc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.++..|..+.+.+.++.-...-..+ +||||+.+.++.+ .+..|.+||..+.+.+.+...
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~----------- 95 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL----------- 95 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc-----------
Confidence 4455677778888888854444455 9999998777777 688999999999987754111
Q ss_pred hhhhhccCCCcceEEEEEcCCCCeEEEEe-C-CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 399 LQNALLNDAAISVNRCVWGPDGLMLGVAF-S-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spd~~~las~~-~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
+..........-..+++||||++|.+.. . +..|.+.|+.+++.+..... .+...-+..+++ . .+ .-+.|
T Consensus 96 -p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~-~--~~-~~~~D 166 (352)
T TIGR02658 96 -PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTAND-T--FF-MHCRD 166 (352)
T ss_pred -CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCC-c--cE-EEeec
Confidence 1000000123345789999999999876 3 68999999999877663321 111111122111 1 11 11223
Q ss_pred CcEEEEEcC-CCeee-e---eecCCCCCeeE-EEeeccCCccEEEEEEcCCeEEEEeCcCCCce-----eEecC------
Q 001159 477 KMIKVWDVV-AGRKQ-Y---TFEGHEAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----VDYDA------ 539 (1135)
Q Consensus 477 ~~i~iwd~~-~~~~~-~---~~~~h~~~v~~-i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~------ 539 (1135)
|......+. +|+.. . .+.+...++.. -.+.+. +|.+++.... |+|.+.|+...+.. ..+..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 333322221 12211 0 11110011100 023332 3456655555 99999996543322 11111
Q ss_pred -CCCcEEEEEEcCCCCEEEEEecC------CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEEe-CCC
Q 001159 540 -PGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEF 610 (1135)
Q Consensus 540 -~~~~i~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~-~dg 610 (1135)
....+.-++++++++.+++.... .++.+.|.++|..+++.+..+.... .+..++++||++ .|++.. .++
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCC
Confidence 12234459999999999874311 1234689999999999999888644 688899999999 888765 678
Q ss_pred eEEEEECCCCceEEEEe
Q 001159 611 QIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~ 627 (1135)
.|.+.|..+++.+..+.
T Consensus 323 ~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 323 TLYIFDAETGKELSSVN 339 (352)
T ss_pred cEEEEECcCCeEEeeec
Confidence 89999999999999884
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=114.52 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=147.7
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE--------------------cCC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPD 419 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------------------spd 419 (1135)
.++|..+.||.++||+...++...... + ...-.+..++..| +-|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~-------------p---~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFA-------------P---IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeec-------------c---chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 378889999999999999876543210 0 0111223333333 224
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
-..|+-|...|.|.+|++..++.-. ...-..|.+.|.++.++.+-. .|.|++.|+.+..|+...++.++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~-~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITA-KLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEE-EEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 4578888899999999999886543 223357999999999998887 8999999999999999999999999999999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC-----CCEEEEEecCCCCCCeEEEEEC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+.+++++|+ |..+++++ +.|++||+++.+....+++|.+.|.++.|.-+ |.++++... ...-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999886 47888876 78999999999999999999999999999877 778776542 2444666654
Q ss_pred C
Q 001159 575 S 575 (1135)
Q Consensus 575 ~ 575 (1135)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-09 Score=104.83 Aligned_cols=253 Identities=14% Similarity=0.112 Sum_probs=164.5
Q ss_pred CCCCeeEEEEec---CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 345 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 345 h~~~V~~v~~sp---~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
..+.+..+.|.- +|...++-+..+|.|.++.......... ++ ++....+ ....-.++.|++.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~~ki--~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSSKKI--SVVEALSLDISTSGT 134 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccchhhh--hheeeeEEEeeccCc
Confidence 345677777763 4444566677889999998764433211 00 0000000 111356889999999
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeee-ecCCCCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEAP 499 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 499 (1135)
.++++..+|.+.+-+.... .+.....+++|...++...|+..... ++.+||+|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999885554432 23344467899999999999876665 89999999999999998 3444433 4568999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC--EEEEEecCCCCCCeEEEEECCCC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
|.+|.-+|. .+.++++|+.|-.|++||.++......-..-.+.|..+..+|.-. .|++|-. +| .++-+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh----~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMH----NG-AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHh----cC-ceEEEeccc
Confidence 999988776 348999999999999999997766655555568899999998543 3444432 11 444444432
Q ss_pred --e---EEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEE-EEECCC
Q 001159 578 --A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDN 619 (1135)
Q Consensus 578 --~---~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~-iwd~~~ 619 (1135)
+ .....+.|.. -...-.|......+++++ .|+.++ +|-.-+
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeecc
Confidence 2 2333444444 333344433335677755 555544 664443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-08 Score=111.98 Aligned_cols=183 Identities=11% Similarity=0.039 Sum_probs=118.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
.++.++.++.|..+|..+|+.+..+............ ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999988776543322222222 336788899999999999998888776554332221122
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce-----eEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
. .+..++.+. .++.|+.||.++|+.+..+..... .+ .+.... +..++.+..+|.+..+|+.+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 378899999999999887765432 11 111122 346778888899999999999877
Q ss_pred EEEeCCCCC--CC---cceEEEcC--CCCEEEEEECCCcEEEEEcCCC
Q 001159 624 TTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~--~~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
......... .. ...+.-+| .+..+++++.+|.+..||..++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 654321110 00 00011111 3457788888999999999887
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=114.36 Aligned_cols=306 Identities=11% Similarity=0.042 Sum_probs=182.2
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..++.++.+|.+..+|..+++................. ++..+++++. ++.++.+|..+|+.+........ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~-~~ 138 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSSE-VL 138 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCce-ee
Confidence 68888999999999999888877765554432222222 4566776653 78899999999999887664332 11
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC---cceEEEcCCCCEEEEEECCCcEEEEEcCCCchhh
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 668 (1135)
..... .+..++.++.+|.++.||.++++.+........... ..+..+. +..++.+..++.+..+|..++....
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 11122 245777788899999999999998887764322100 0111121 2467788888999999998883222
Q ss_pred hhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccc
Q 001159 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1135)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 748 (1135)
+.-..... +. ...-+
T Consensus 215 ~~~~~~~~--------------------g~---------------------------------------------~~~~~ 229 (377)
T TIGR03300 215 EQRVALPK--------------------GR---------------------------------------------TELER 229 (377)
T ss_pred eeccccCC--------------------CC---------------------------------------------Cchhh
Confidence 10000000 00 00000
Q ss_pred ccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCc
Q 001159 749 SWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 828 (1135)
Q Consensus 749 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1135)
+.+.. ....+ .+..+++++.+|.+..||..+.+ .+|....
T Consensus 230 ~~~~~-----------------------~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~-- 269 (377)
T TIGR03300 230 LVDVD-----------------------GDPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDA-- 269 (377)
T ss_pred hhccC-----------------------CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeecc--
Confidence 00000 00111 13346666677778777653221 2333221
Q ss_pred ceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCc
Q 001159 829 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 829 ~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
.. ....+ .++..+.+++ +|.|..+|..+++.+....... ......... +..|++++.+|.
T Consensus 270 ------------~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~ 331 (377)
T TIGR03300 270 ------------SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGY 331 (377)
T ss_pred ------------CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCE
Confidence 00 11111 2455566555 8999999999998876653222 222333332 357888999999
Q ss_pred EEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEE
Q 001159 907 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iw 952 (1135)
|+++|..+|+.+..++.+...+.+--...++ .|+.++.||.|..+
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999999999999888666544332222244 57788899988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=108.64 Aligned_cols=212 Identities=15% Similarity=0.244 Sum_probs=139.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
.++||.+.|++...-|-.. -+++.+.|.+++||--+ .++.-..+. .-..+++++.+.+.. ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5778999999888888776 58999999999999643 343333332 124567777776654 78999999999988
Q ss_pred EeC----cCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE-CCCCeEEEEeecccCCceeEEEecCCC
Q 001159 526 WLY----DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
+.+ +..........|...+..+.|+-...++++++. |..+ .|. .+.+..+..+.-.. .-..+.+.-
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~-- 165 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFET--PASALQFDA-- 165 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeec--cCCCCceee--
Confidence 854 334445566778889999999999999999874 3333 332 22333222211110 001111111
Q ss_pred CEEEEEeCCCeEEEEECC--CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccc
Q 001159 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (1135)
.+.+.|...|.|.+-.+. .-.++.++.+| ...+.++.|.+....+.+|..|..+.+||+.........+.+|
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 144556566666665543 34566666665 4589999999999999999999999999996653333334443
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=105.63 Aligned_cols=169 Identities=18% Similarity=0.249 Sum_probs=122.9
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHH
Q 001159 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1135)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~ 73 (1135)
...+|+.+||+.||-..||.++|+.+.+|+|+..+ -..+|.+|..|+-++|+..+.++.+..-.. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 45789999999999999999999999999999872 457899999999999999999985432122 22489
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCcc---chhhhccCCCchhHHHHHHHHHHhh
Q 001159 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR---QNEQLSKYGDTKSARNIMLVELKKL 150 (1135)
Q Consensus 74 ~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~r~~l~~~l~~~ 150 (1135)
|.+.+|+++|++..+...+|+.|+|.++.|+...+++.++.|...|..--++ ......-| ....|.++...+.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~--~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL--SQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH--HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999777777777776654432121 11111100 234477777777766
Q ss_pred cccCcccccccCCCCCchHHHHHHHHHHHHHH
Q 001159 151 IEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1135)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q 182 (1135)
|-...- . --..+|..||+..+..|
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 543211 0 01347888885555444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-08 Score=120.35 Aligned_cols=258 Identities=12% Similarity=0.139 Sum_probs=162.2
Q ss_pred eEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC--C------------CCCeEEEEEecCCCcEEEEEe-CCCc
Q 001159 844 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIGM-EDSS 906 (1135)
Q Consensus 844 i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~--h------------~~~v~~l~~sp~~~~~lasg~-~dg~ 906 (1135)
...+++++++..+.++. ++.|++||... ..+..+.+ . -.....+++++ +++.|+++. .++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 35688988655444444 68899999864 44444432 1 12357899998 666555554 4578
Q ss_pred EEEEEcccceeeEEecCc-----------------CCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceecee---ee
Q 001159 907 VQIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSR---FI 965 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h-----------------~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~~~---~~ 965 (1135)
|+++|..++. +.++.+- -...++|+|+| ++.++++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987765 3333210 12346899999 5677788888899999999876532100 00
Q ss_pred ecCCCCC---CCCCCceEEEECCCCcEEEE--EecCeEEEEec-CCceeecc-----------CCC--C-----CCCCCE
Q 001159 966 QAPAGRQ---SPLVGETKVQFHNDQTHLLV--VHESQISVYDS-KLECSRSW-----------SPK--D-----ALPAPI 1021 (1135)
Q Consensus 966 ~~~~~~~---~~~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~-~~~~~~~~-----------~~~--~-----~h~~~i 1021 (1135)
....+.. ........++|+|+|++|++ +.++.|++||+ ++...... ... . ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0011111 01134578999999986665 46789999998 33321100 000 0 001123
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee-cccc--ccCCCCccEEEEecCCCCCEEEEEecCCcEEEE
Q 001159 1022 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY-IPTY--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1098 (1135)
Q Consensus 1022 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W 1098 (1135)
..++++++|.++++-+.++.|++||..++........... ...+ ....-..+..+++++ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 5899999999888889999999999998766533221100 0000 011113567888888 67899999999999999
Q ss_pred ecCCCcc
Q 001159 1099 EPSDAEL 1105 (1135)
Q Consensus 1099 ~~~~~~~ 1105 (1135)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988763
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-10 Score=120.60 Aligned_cols=285 Identities=15% Similarity=0.219 Sum_probs=194.9
Q ss_pred ccCCcceeeecCCCCCCccccCCC-------cceeeEEeecC--CCCeeEEEEecCCC-eEEEEEeccceEEEEEcCCcc
Q 001159 311 RTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQ--GSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRE 380 (1135)
Q Consensus 311 ~~~~~~~v~~s~~g~~~~~~~~d~-------~~~~~~~~~~h--~~~V~~v~~sp~g~-~lla~g~~dg~i~iwd~~~~~ 380 (1135)
..+++..+..+|-|+.+++.+..+ .++.+-+-+.| .-.|-.+.|||... -+-++......-.||++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 345788899999999988876543 46666666765 34688889987542 134455556677889886433
Q ss_pred ccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEE
Q 001159 381 RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1135)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v 459 (1135)
.-+ ..-++.||...|+.+-|.|. -..||+++.|..+..||+.+... .......-......|
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQV 164 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCcee
Confidence 211 11136789999999999995 45899999999999999998653 223333444556789
Q ss_pred EEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-
Q 001159 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY- 537 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~- 537 (1135)
+|+.... .+...+..+.|.+||++.| ..+..+++|...|+.+.|..... ..+.+.+.||+|+.||.+........
T Consensus 165 kwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 165 KWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeeccccccccccee
Confidence 9987666 4556667789999999865 56788999999999998875433 57889999999999999876544322
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE---------EECCC-CeEEEEeecccCCceeEEEecCC--------
Q 001159 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTT-------- 599 (1135)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~i~~s~~-------- 599 (1135)
.....+|..-.+.|-|.-.+.--. .|+..+.+ |+..+ .+.+..|.||.+ .|....|-..
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ccccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCC
Confidence 223446666667675543222111 11223333 33333 457899999987 4443333221
Q ss_pred --CCEEEEEeCCCeEEEEECCC
Q 001159 600 --RNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 600 --~~~l~~~~~dg~i~iwd~~~ 619 (1135)
.-.|++-+.|..+++|-+.+
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 23689999999999998864
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=115.06 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=172.6
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-ce---eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
.+.||...|..++--.+.+-+++++.|.+|++|.++... .+ .+..+++.|+.+|.++.|..+.+ +++++ |+-
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 478999999999988888999999999999999997532 12 24457889999999999999987 56655 789
Q ss_pred EEEEEcCCCeeeeeecC--CCCCeeEEEeeccCCccEEEEE-EcCCeEEEEeCcCCCceeEe-----cCCCCcEEEEEEc
Q 001159 479 IKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYS 550 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s 550 (1135)
|++||.--|+.+..+.. ..+.+..+...++-+...++.| +...+++++|.+..+....+ .+++..+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999988887764421 2223333333344343555555 78899999999887655443 3345678999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEE-EECCCCceEEEEeCC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDAD 629 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~ 629 (1135)
+.|++++++-. +|.|.+.|.++|+.+..++...- ....++ .|..+.++....|.++.+ |...++......+..
T Consensus 886 ~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 99999998865 88999999999998877664322 222222 344566777777888888 988777665555433
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
... . --...-|.-++++...+.+.+|.
T Consensus 960 pep--a--hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 960 PEP--A--HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred Ccc--h--hhhhccCceeEEeccCcEEEEEe
Confidence 211 0 01112366778887777888875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-07 Score=115.40 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=59.6
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-------------CcCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------------GHQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
...+++++ +|.++++-+.++.|++||..++....... +.-....+|+++++|+++++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 35889999 78888888889999999998876543221 12235789999999999999999999999
Q ss_pred EeCCCCce
Q 001159 952 WSIDKWEK 959 (1135)
Q Consensus 952 wd~~~~~~ 959 (1135)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-08 Score=96.96 Aligned_cols=247 Identities=13% Similarity=0.078 Sum_probs=159.1
Q ss_pred CCcceEEEEEcC---CCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccC---CEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 407 AAISVNRCVWGP---DGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 407 h~~~V~~v~~sp---d~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
....+..+.|+. +|. .|+-+..+|.|.++.............+..-.- ...++.|++.+. -++++..+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcE
Confidence 455677788864 555 667778899999998775433221112221111 235778898888 68888889999
Q ss_pred EEEEcCCCeee--eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC-ceeE-ecCCCCcEEEEEEcC-CCC
Q 001159 480 KVWDVVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVD-YDAPGNWCTMMAYSA-DGT 554 (1135)
Q Consensus 480 ~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~~~~s~-~~~ 554 (1135)
.+-+....... ++++.|+.+.+...|+.... +.+++|+.|+.+..||++..+ .+.. ...|...|.++.-+| .+.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 86665555444 37899999999999986654 899999999999999999444 2322 455777888888776 467
Q ss_pred EEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCCceE-----EEEe
Q 001159 555 RLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNML-----TTVD 627 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~-----~~~~ 627 (1135)
++++|+. |..|++||.+ -++++..-. -++.|..+..+|.-. .++.++.-.-.+|-+...+... ...+
T Consensus 225 ~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 225 YIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eEEEecc----ccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 8888876 6789999998 456554333 334789999988543 2233333333566665543221 2222
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEEC-CCcEE-EEEcCCC
Q 001159 628 ADGGLPASPRLRFNKEGSLLAVTTS-DNGIK-ILANSDG 664 (1135)
Q Consensus 628 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~-iwd~~~~ 664 (1135)
.|.. -++.-.|......+++++. |+.++ +|-..++
T Consensus 299 ~hdS--l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDS--LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccc--eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2221 3344444333356777653 66644 7765554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-07 Score=106.11 Aligned_cols=217 Identities=12% Similarity=0.028 Sum_probs=131.7
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec---cceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
...++..|.........+... .+....|||||+++++..+. +..|.++|+.+++...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 344455444444333333343 78899999999864443332 3579999998876532
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-- 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~-- 477 (1135)
+....+.+...+|||||+.|+.... +..|.++|+.++.. + .+..+........|+|||+.+++.+. ..+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCc
Confidence 2224455667889999998876532 35688888877643 2 23334433445689999996444432 233
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---------CeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
.|.+.|+.+++..+.... ... ...|+|++ +.++..+.. ..|.+.|++++... .+... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeE
Confidence 688888887776433221 111 23777755 666655543 36777788766543 33332 2333588
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
|+|||+.++..... .+...+.+.++..
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99999998877643 2344577777653
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=128.39 Aligned_cols=198 Identities=18% Similarity=0.301 Sum_probs=157.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+-..|.++.=+|... +.+||+.||.|++|....++.+.. |+. .|. ..|+.+.|+.+|..+.
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~rt------------~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FRT------------AGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----eec------------cCc-chhhhhhhcccCCcee
Confidence 457889999999998 567899999999999988876542 221 233 7899999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc---CCCcEEEEEcCCC---eeeeeecCCCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAG---RKQYTFEGHEA 498 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~---~~~~~~~~h~~ 498 (1135)
.+..||.+.+|.+.. +.....+.|.....++.|-. . .+++++ +++.+.+||..-. .+++ ..|.+
T Consensus 2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence 999999999999983 34446778999999999986 3 567664 5789999996532 2333 78999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.++++++.|.. +.+++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.|+||++....
T Consensus 2338 gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2338 GATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFG 2401 (2439)
T ss_pred CceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccc
Confidence 99999999977 8999999999999999998777665553 33 4557777764 8889999999888
Q ss_pred EEEEeeccc
Q 001159 579 IKRTYSGFR 587 (1135)
Q Consensus 579 ~~~~~~~~~ 587 (1135)
.+.++...+
T Consensus 2402 ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2402 LLHTFPSEH 2410 (2439)
T ss_pred hhhcCchhh
Confidence 887776543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=128.10 Aligned_cols=200 Identities=14% Similarity=0.227 Sum_probs=162.8
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
..+-..|.++.=+|...+.++|+.||.|++|....+..+....+. | ...|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345567889999999999999999999999999998877655442 3 38899999999999 7888888999999996
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE---cCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
. .+.....+.|........|-. ..+++++ .++.+.+||.-.... -...+.|.+.++++++.|..+.+++||
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 666777888998888888765 3466653 578899998754433 234488999999999999999999998
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
. +|.|++||++..++++.+.. +. ...++++|+..|.++||++.....+.++..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 5 88999999998887776654 33 467899999999999999998877777654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=115.10 Aligned_cols=219 Identities=16% Similarity=0.235 Sum_probs=155.9
Q ss_pred EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-------ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC
Q 001159 875 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 947 (1135)
Q Consensus 875 ~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~ 947 (1135)
+..+.+|...|..++--. +.+-+++++.|++|++|.+.. ..+..+++.|..+|.++.|-.|-++++++ |+
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999886654 567788999999999999863 34667788999999999999998888876 88
Q ss_pred cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC-CcEEE-E--EecCeEEEEec-CCceeeccCC--CCCCCCC
Q 001159 948 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLL-V--VHESQISVYDS-KLECSRSWSP--KDALPAP 1020 (1135)
Q Consensus 948 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~-~--~~d~~v~vwd~-~~~~~~~~~~--~~~h~~~ 1020 (1135)
.|.+||.--+..+.+..-.... ..+..+..-+. .+.++ + +...+|+++|. ..+....+.. ..+-.+.
T Consensus 805 giHlWDPFigr~Laq~~dapk~------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKE------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred cceeecccccchhHhhhcCccc------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 8999998877654432111111 12222322222 33333 3 35789999998 4444433322 2233567
Q ss_pred EEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEE-Ee
Q 001159 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV-VE 1099 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~-W~ 1099 (1135)
+.+++..+.|++++++-.+|+|.+.|.++|+.+..+++..-- . +-++ -|.| +.|+....|.++.+ |-
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd--------l--lqla-apsd-q~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD--------L--LQLA-APSD-QALAQSALDHSLAVNWH 946 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch--------h--hhhc-Cchh-HHHHhhcccceeEeeeh
Confidence 899999999999999999999999999999999877654210 1 1111 2323 68888889999999 99
Q ss_pred cCCCccccCCCCCCC
Q 001159 1100 PSDAELKWGGTPSQD 1114 (1135)
Q Consensus 1100 ~~~~~~~~~~~~~~~ 1114 (1135)
..++-..++..||.+
T Consensus 947 aldgimh~q~kpppe 961 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPE 961 (1034)
T ss_pred hcCCeeeeccCCCCc
Confidence 988888887766654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=110.20 Aligned_cols=304 Identities=11% Similarity=0.188 Sum_probs=194.6
Q ss_pred CCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceE
Q 001159 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 333 d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
+..+...-.+++-.+++.++.++|.|+. +|.++.-| +.+-|+...-.... | +-.-..-.|.
T Consensus 11 ns~tf~kslsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-----~------------l~h~tpw~va 71 (1081)
T KOG0309|consen 11 NSPTFGKSLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-----W------------LHHITPWQVA 71 (1081)
T ss_pred CCCccCceeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-----e------------eeccCcchhc
Confidence 3333334445566779999999999986 55666554 44456553221100 0 0001122467
Q ss_pred EEEEcCCCC--eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-e
Q 001159 413 RCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-K 489 (1135)
Q Consensus 413 ~v~~spd~~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~ 489 (1135)
.+.|||... +-++........+|++.....-.....+.+|...|+.+.|.|.... .+++++.|..+..||+++.. .
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcc
Confidence 788887543 4444445556778998766554555578899999999999998776 89999999999999998754 4
Q ss_pred eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-eEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCC
Q 001159 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGES 567 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~ 567 (1135)
+..+..-...-..++|+... ..+.+.+..+.|++||.+.+... ..++.+...|..+.|..-- ..+.+++ .|+
T Consensus 151 ~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~ 224 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDG 224 (1081)
T ss_pred eeeeecccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCC
Confidence 55555555667788887654 34555667788999999987654 4677777788888886532 2344543 489
Q ss_pred eEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE--eCCCeEEE---------EECCC-CceEEEEeCCCCCCCc
Q 001159 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKF---------WDMDN-MNMLTTVDADGGLPAS 635 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~v 635 (1135)
+|+.||..............+.+|..-++.|-|+-.+.- -.+..+.+ |+..+ .+++.++.+|.. .|
T Consensus 225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V 302 (1081)
T KOG0309|consen 225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VV 302 (1081)
T ss_pred ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HH
Confidence 999999875543333333333355555666655433321 11223333 44333 457778887754 45
Q ss_pred ceEEEcCC----------CCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKE----------GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
....|-.. .-.|++=+.|.++++|-+.+.
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 44444322 237899999999999988653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-06 Score=98.76 Aligned_cols=197 Identities=11% Similarity=0.107 Sum_probs=126.3
Q ss_pred CEEEEEEecCCCeEEEE-EEc-CCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC--CeEEEEeCcC
Q 001159 455 GVNDIAFAHPNKQLCIV-TCG-DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDY 530 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~-s~~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~iwd~~~ 530 (1135)
.+....|+|||+.+.++ +-. .+..|.++|+.+++..... ...+......|+|++. ..+++.+.+ ..|.++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS-KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC-EEEEEEccCCCcEEEEEECCC
Confidence 77889999999852222 232 2467999999888754433 3455566778888653 344455444 4577778766
Q ss_pred CCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-
Q 001159 531 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE- 609 (1135)
Q Consensus 531 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d- 609 (1135)
+.. ..+...........|+|||+.|+..+. ..+...|+++|+.+++..+...... ....|+|||+.++..+..
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCC
Confidence 553 334433333445689999999987763 3345589999998887644333211 124899999998876543
Q ss_pred --------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC---cEEEEEcCC
Q 001159 610 --------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSD 663 (1135)
Q Consensus 610 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 663 (1135)
..|.+.|+.++.. ..+.... ......|+|||+.|+..+.++ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688889888764 3343321 234688999999888776532 244555543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-06 Score=87.23 Aligned_cols=237 Identities=14% Similarity=0.146 Sum_probs=138.4
Q ss_pred EEeecCCCEEEEEeCCeEEEEECCCc--cEEEEEe---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe
Q 001159 847 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMFM---SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 921 (1135)
++.+.||++||+..|..|.|-..++. ..+.+.. .....=.-++||| |+.+||.+...|+|++||+....+. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 67889999999999999988877652 2223322 2333467899999 9999999999999999999854432 33
Q ss_pred cC-------cCCCeEEEEEcCCC------CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 922 KG-------HQNRITGLAFSPTL------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 922 ~~-------h~~~i~~l~~s~d~------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.. -...|.+|.|.+-. ..|+...-+|.++=+-+..+....-..............+|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 13467778775432 245556667777766654321111111111111111226899999999999
Q ss_pred EEEEEe--cCeEEEEecCCceeeccCCCCCCCCCEEEEEEe---eCCCEEEEEeCCCe------EEEEECCCceeeeeeC
Q 001159 989 HLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGA------IGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 989 ~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s---~d~~~l~~~~~dg~------I~vwd~~~~~~~~~~~ 1057 (1135)
+|++++ ...-..+... ...+++-..- |..+. ++...|+. -.+|.+-+.+...+..
T Consensus 161 LLlVgG~~~~~~~~s~a~-------------~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKAS-------------SCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred EEEEeccCCCCCcccccc-------------ccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeeccc
Confidence 998843 1110001000 1122222221 22221 22222222 2445555544433211
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc--cccCCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE--LKWGGT 1110 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~--~~~~~~ 1110 (1135)
........+..+| ||..||+...+|+|.+|++..-. +.|...
T Consensus 227 ----------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 227 ----------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ----------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1124455777788 88999999999999999998743 666543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-06 Score=87.25 Aligned_cols=209 Identities=17% Similarity=0.164 Sum_probs=146.5
Q ss_pred EEEEeec-CCCEEEEEe-CC-eEEEEECCCccEEEEEeCCCCCe--EEEEEecCCCcEEEEEeC-----CCcEEEEEcc-
Q 001159 845 ACIALSK-NDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNVR- 913 (1135)
Q Consensus 845 ~~l~~s~-dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~lasg~~-----dg~v~iwd~~- 913 (1135)
-.++.+| +...++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3688899 666777776 44 58999999999988876544442 3578999 8999988643 4789999999
Q ss_pred cceeeEEecCcCCCeEEEEEcCCCCeEEEEc------------------CCCcEEEEeCCCCceeceeeeecCCCCCCCC
Q 001159 914 VDEVKTKLKGHQNRITGLAFSPTLNALVSSG------------------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 975 (1135)
Q Consensus 914 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~------------------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+.+.+.++..|.-..-.|.+.|||+.|+.+- .+..+.+-|..+++.+....+.... |.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~-~~--- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL-HQ--- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-cc---
Confidence 7788899988877778899999998777652 1235666777777765543332111 11
Q ss_pred CCceEEEECCCCcEEEEEe-cC-------eEEEEecCCceeeccCCC----CCCCCCEEEEEEeeCCCEEEEEe-CCCeE
Q 001159 976 VGETKVQFHNDQTHLLVVH-ES-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYAGF-CDGAI 1042 (1135)
Q Consensus 976 ~~v~~~~~s~dg~~l~~~~-d~-------~v~vwd~~~~~~~~~~~~----~~h~~~i~~~~~s~d~~~l~~~~-~dg~I 1042 (1135)
..+.++++.++|..++... .+ -|-+++. +..+..+... .....-|-+|++++++.++++++ .-+++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 5789999999998877742 11 1344444 1112222211 12256789999999998876554 56789
Q ss_pred EEEECCCceeeeeeCCc
Q 001159 1043 GVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1043 ~vwd~~~~~~~~~~~~~ 1059 (1135)
.+||..+|+++......
T Consensus 242 ~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLP 258 (305)
T ss_pred EEEECCCCCEeeccccC
Confidence 99999999999776643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.3e-07 Score=98.80 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=133.4
Q ss_pred EEEEEcCCCCeEEEEeC----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 412 NRCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+-.+|+|...++|+++- .|.|.||-- +|+.-+.. +..- .+++++|.|..- .|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34679999999998863 577888743 33322211 2222 356799999876 8889989999999997776
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCC--C--cEEEEEEcCCCCEE-----
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APG--N--WCTMMAYSADGTRL----- 556 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~--~--~i~~~~~s~~~~~l----- 556 (1135)
+.-.....|..+|..+.|++++ ..++++..-|.+.+|.++..+...... .|. . ...|...++++.-+
T Consensus 92 e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 6555556799999999998865 899999999999999887544433221 111 1 33455566764321
Q ss_pred -EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 557 -FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 557 -~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
++.+ +...-....-|..++.. +.. .+ .-.|+|..++.++.+|+|+--|- .++..........
T Consensus 170 aaVtg-De~alD~~fnwk~~~a~--rs~-~k--------sgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~---- 232 (1416)
T KOG3617|consen 170 AAVTG-DESALDEPFNWKESLAE--RSD-EK--------SGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE---- 232 (1416)
T ss_pred hhccC-chhhhcccccCccchhh--ccc-cc--------cCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch----
Confidence 2222 11111112222211111 110 01 12577888999999999987774 3555555554322
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEE
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
..+-|.+.-..+++...+-++.++
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEE
Confidence 335566544444444444444443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=92.88 Aligned_cols=256 Identities=14% Similarity=0.200 Sum_probs=166.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccC---Cceeecccccccchhhhhcc--CCCcceEEEEEcCC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK---PFKVWDISAASMPLQNALLN--DAAISVNRCVWGPD 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd 419 (1135)
..+-|++|.|...|. +||+|...|.|.+|.-+....-..+ .|+.++++ ...++ .-...|..+.|..+
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------FDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------FDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc-------hhhhhhccHHHHhhheeeecC
Confidence 346799999999997 7999999999999986643311000 11111100 00011 12356889999876
Q ss_pred CC--eEEEEeCCCeEEEEEeCCC------------------C-c------e--------------eeeeEe-ecccCCEE
Q 001159 420 GL--MLGVAFSKHIVHLYTYNPT------------------G-E------L--------------RQHLEI-DAHVGGVN 457 (1135)
Q Consensus 420 ~~--~las~~~dg~i~iwd~~~~------------------~-~------~--------------~~~~~l-~~h~~~v~ 457 (1135)
+. .++..+.|.+|++|.+... + . + .+.... ..|..-|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 54 5667789999999987532 0 0 0 001111 46777889
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEcCCCee---eeeecCCC-----CCeeEEEeeccCCccEEEEEEcCCeEEEEeCc
Q 001159 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~ 529 (1135)
++.|..|.+ .++++. |=.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++
T Consensus 177 SiS~NsD~e--t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 177 SISFNSDKE--TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeecCchh--eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhh
Confidence 999999888 566654 77899999864322 22233343 4578888998754 677778889999999998
Q ss_pred CCC-----c-ee--Eec--------CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-eEEEEeecccC----
Q 001159 530 YLG-----S-RV--DYD--------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK---- 588 (1135)
Q Consensus 530 ~~~-----~-~~--~~~--------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~---- 588 (1135)
... + .. .+. .-...|..+.|+++|+++++-. -.++.+||.+.. .++.++.-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHH
Confidence 321 1 11 111 1123688899999999999864 567999999854 46666654432
Q ss_pred -------Cce---eEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 589 -------RSL---GVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 589 -------~~v---~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
..| ..+.|+.|.+.+++|+.....-+|-.
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 23678888888888887766666653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-06 Score=96.21 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=115.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCC--Cee-----EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVY-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 541 (1135)
.++.++.++.+.-+|..+|+.+.+...... ... .+.-.|.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 567777888999999999998876542210 000 0000111123577888899999999999998887665543
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce-----eEEEecCCCCEEEEEeCCCeEEEEE
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~i~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
....+.... + ..++.+. .++.++.+|..+|+.+..+..... .+ .+... .+..++.++.+|.+..+|
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 322222221 3 3455543 377899999999999988765321 11 11111 134577788899999999
Q ss_pred CCCCceEEEEeCCCCC--CC---cceEEEcC--CCCEEEEEECCCcEEEEEcCCCc
Q 001159 617 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~--~~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
..+|+.+......... .. ...+.-+| .+..+++++.+|.+..+|..++.
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 9999877665322110 00 01111222 24567777788999999988873
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-08 Score=101.43 Aligned_cols=168 Identities=15% Similarity=0.118 Sum_probs=114.2
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.+..+..+|.++ ++|++..+....++++....+ ..+.++.. .+......+..+..+......-.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecccCcceeeeeeccceEEEEeecC
Confidence 556677788887 788888888877777765443 11111110 0111222333333333333333344
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee-cCCCCCeeEEEee
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~ 506 (1135)
....+.+|....+.+. .+-||-..++.++|+||++ +|+++..|..|+|-....-..+..| -||..-|..++..
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556667776654332 3458999999999999998 8999999999999877655555544 4799999999986
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEec
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 538 (1135)
++ ..|+++|.|+++++||+.+++....+.
T Consensus 204 ~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 DN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 54 579999999999999999988775443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-06 Score=95.78 Aligned_cols=143 Identities=10% Similarity=0.035 Sum_probs=91.0
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC----------cEE-EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----------WCT-MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~i~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.+|.+..+|..+++.+........ .+. .+.. ++..++.++. ++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 5777777888888888888777665543321 000 0111 3445665543 778999999999998
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC---cceEEEcCCCCEEEEEECCCcEE
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.+...... ...+.... +..++.+..++.++.+|..+|+.+........... ..+... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 87765432 11112222 45677788899999999999999888764321000 011111 133577788889999
Q ss_pred EEEcCCCc
Q 001159 658 ILANSDGV 665 (1135)
Q Consensus 658 iwd~~~~~ 665 (1135)
.+|..++.
T Consensus 219 a~d~~~G~ 226 (394)
T PRK11138 219 AVLMEQGQ 226 (394)
T ss_pred EEEccCCh
Confidence 99998884
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.1e-07 Score=98.88 Aligned_cols=111 Identities=13% Similarity=0.369 Sum_probs=84.7
Q ss_pred CeeEEEEecCCCeEEEEEe----ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.-+-..|+|..+ ++|+++ ..|.|.||- ++|++-...++ .-.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHHH
Confidence 445567999998 677775 457888885 45554332111 1225679999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|.|-.-|.+.+|...+.+.-. ....|+.+|..+.||++|. .++|+..-|.|.+|...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 999999999999988754322 3346999999999999999 89999999999999865
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-06 Score=85.05 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=153.3
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
-.+|+.|+..|...+|...+.....+....+...+.-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~------------------------------------------ 121 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV------------------------------------------ 121 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhh------------------------------------------
Confidence 34889999999999999987644444333333222110
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
...........++..|.++++.+++............+ .+ .++++++|++++++.+....|..|.++
T Consensus 122 -----~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-------~~-ns~~~snd~~~~~~Vgds~~Vf~y~id 188 (344)
T KOG4532|consen 122 -----KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-------TQ-NSLHYSNDPSWGSSVGDSRRVFRYAID 188 (344)
T ss_pred -----hhhcccccceeeccCCcceeEEEEecCcccceeecccc-------ce-eeeEEcCCCceEEEecCCCcceEEEeC
Confidence 01111223456677778888888876444333322111 13 889999999999999998889998775
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE-----
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----- 877 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~----- 877 (1135)
.... .+....... - ...-.+..|+.....+|++. ||++.|||+........
T Consensus 189 ~~se--------------------y~~~~~~a~--t-~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 189 DESE--------------------YIENIYEAP--T-SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred Cccc--------------------eeeeeEecc--c-CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence 4221 111111111 1 44556788999999999999 99999999986543222
Q ss_pred EeCCCCCeEEEEEecCCC--cEEEEEeCCCcEEEEEcccceeeEEec-------CcCC-CeEEEEEcCCCCeEEEEcCCC
Q 001159 878 FMSPPPAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQN-RITGLAFSPTLNALVSSGADA 947 (1135)
Q Consensus 878 ~~~h~~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~-~i~~l~~s~d~~~l~s~~~D~ 947 (1135)
-..|.+++..+.|++ .| .+|...-.-+.+.+-|+.+++..+.+. .|.. .|..-.|+.++....+...+.
T Consensus 246 rp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred CCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 234889999999997 44 355555556789999999886554432 3333 388888988887777666554
Q ss_pred cEEEEeCCCCc
Q 001159 948 QLCMWSIDKWE 958 (1135)
Q Consensus 948 ~i~iwd~~~~~ 958 (1135)
+.-|++.+..
T Consensus 325 -~ae~ni~srs 334 (344)
T KOG4532|consen 325 -GAEYNILSRS 334 (344)
T ss_pred -hheeeccccc
Confidence 6677777644
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-05 Score=79.98 Aligned_cols=240 Identities=9% Similarity=0.120 Sum_probs=138.1
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCC--ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
.++.+.||++||+. .|..|.|=..+.+- .+......+.-.-.-..++||||+. +||.+...|+|+++|+.. ..+
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g-~~l 77 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMG-SEL 77 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEeccc-cee
Confidence 36778899999887 55567666555431 1121111112222467899999999 899999999999999764 444
Q ss_pred eeecC-------CCCCeeEEEeeccCC----ccEEEEEEcCCeEEEEeCcCC-----CceeEec--C-CCCcEEEEEEcC
Q 001159 491 YTFEG-------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYL-----GSRVDYD--A-PGNWCTMMAYSA 551 (1135)
Q Consensus 491 ~~~~~-------h~~~v~~i~~~~~~~----~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~--~-~~~~i~~~~~s~ 551 (1135)
..+.. -...|..+.|..... ...|+.-..+|.++-|-+..+ +....+. . ....|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 44432 124566666654321 125677778888887776432 1222222 2 356899999999
Q ss_pred CCCEEEEEecCCCCCCe-------EEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 552 DGTRLFSCGTSKEGESH-------LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~-------i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
.-+.|+++|.....++. +..|.+-++.+ -.....+.+...-.... +-.+|.+-+.+...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASSK---RRGLLRIPSFKFFS 223 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCcccccccc---ccceeeccceeeee
Confidence 99999988753322211 22222211111 00000111111111111 12234333322222
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccc
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 673 (1135)
.. ......|..+..||||+.||+...+|.|.+|++.+- ...+.+..
T Consensus 224 ~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~~ 269 (282)
T PF15492_consen 224 RQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWKQ 269 (282)
T ss_pred cc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccch
Confidence 11 123457899999999999999999999999999876 44444443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=91.13 Aligned_cols=247 Identities=15% Similarity=0.253 Sum_probs=165.4
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC--ceeeeeEeeccc------------CCEEEEEEecCCCeEEEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~v~~v~~s~d~~~~~l~s 472 (1135)
....|++|.|...|.|||+|...|.|.++.-.... ..+-..++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999865432 122223455664 3578899988776556777
Q ss_pred EcCCCcEEEEEcCCCe-------------------ee-----------------------eee-cCCCCCeeEEEeeccC
Q 001159 473 CGDDKMIKVWDVVAGR-------------------KQ-----------------------YTF-EGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~i~~~~~~ 509 (1135)
.+.|++|++|.+.... .+ +.. ..|...|+++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875431 00 001 2466677888876543
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCcee---EecCCC-----CcEEEEEEcCCCCEEE-EEecCCCCCCeEEEEECCCCeEE
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPG-----NWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~-----~~i~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++ .+.|=.|.+|+++....-. .+..|. ..|++..|+|....++ ..+ ..|.|++-|++...+.
T Consensus 185 --et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs----SkG~Ikl~DlRq~alc 257 (460)
T COG5170 185 --ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS----SKGEIKLNDLRQSALC 257 (460)
T ss_pred --heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec----CCCcEEehhhhhhhhc
Confidence 4444 4567889999887654332 233332 2578888999654333 322 2788999999843221
Q ss_pred ----EE------------eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCC----------CC
Q 001159 581 ----RT------------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGG----------LP 633 (1135)
Q Consensus 581 ----~~------------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~ 633 (1135)
.. +.+.. ..|..+.|+++|+++++-+. -+|++||++. ..++.++..|.. ..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 11 11111 25777899999999888754 5899999986 457777754421 11
Q ss_pred Cc---ceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 634 AS---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 634 ~v---~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.| ..+.|+.|.+.+++|+..+...++-..
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeeccc
Confidence 12 357889999999999999888888643
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.5e-09 Score=114.71 Aligned_cols=215 Identities=13% Similarity=0.213 Sum_probs=157.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC-cEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~-~i~iw 482 (1135)
+..|....+|++||-+.+.|++|+..|.|+++++.+|.... ..++|..+|+.+.=+.||.. .|.+.+... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67789999999999999999999999999999999997665 67789999999999999984 333333333 57799
Q ss_pred EcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCC---CCcEEEEEEcCCCCEEE
Q 001159 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAP---GNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~---~~~i~~~~~s~~~~~l~ 557 (1135)
++.. +...++|.+ -.++.|+... ..-+.|..-....+||+++.....++ ... ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9864 555555543 3466675443 33445555577889999998776542 221 22346788999988887
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
-- | .+||.+..+.++.|..... -..-.|+|.|..++.-++ |||+++.+.+.....-.. ..
T Consensus 1247 nd-------G--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 ND-------G--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred eC-------c--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 53 2 4799998888887765542 223459999999988765 899999988877654322 56
Q ss_pred EEEcCCCCEEE
Q 001159 638 LRFNKEGSLLA 648 (1135)
Q Consensus 638 ~~~~~~~~~l~ 648 (1135)
+.|+..|..+.
T Consensus 1307 VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1307 VTFNSTGDVMY 1317 (1516)
T ss_pred EEeccCccchh
Confidence 77887776554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-06 Score=83.79 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=126.4
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCc--ceEEEEEcCCCCeEEEEeCCCeEEEEEeCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~spd~~~las~~~dg~i~iwd~~~ 439 (1135)
+..++.|.++++.+++.+.... .-|.. .+.++++|+|++++++.+....|..|.++.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 3446778888888887654321 11332 388999999999999999999999999987
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-----eecCCCCCeeEEEeeccCCccEE
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l 514 (1135)
................-.+..|+.... .+|++..||++.|||++.-.... +-..|.+.+..+.|++.+.-++|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 655433323334455667889998887 79999999999999998644332 22358999999999987666778
Q ss_pred EEEEcCCeEEEEeCcCCCceeEecCCC--------CcEEEEEEcCCCCEEEEEe
Q 001159 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 515 ~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~ 560 (1135)
+..-.-+.+.+.|+++......+.... ..|....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 877778899999999877654333222 2356666666666555543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=89.33 Aligned_cols=209 Identities=13% Similarity=0.193 Sum_probs=127.2
Q ss_pred eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC
Q 001159 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 428 (1135)
|+.+.|+-+- +|+++..++.+......++.+... |+-... .-+...+..|.++-.+-+.+-.+..++++..
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccC--cCceeeeeccCCCCCcccccccCCceEecCC
Confidence 6677777664 678888888777776655544321 111100 1111123334444444445556788999999
Q ss_pred CCeEEEEEeCCCCceeeeeEee-cccCCEEEEEEecCCCeEEEEEEc-----CCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 429 KHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
||.+.+.+.+....+. ..+. .|.+ -.+.++...+. .+.+++ .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 1211 12233334444 333332 1224456665443322111112234999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEECCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
++-+|... +.+++|+.||.+-+||.+...... .+..|...++.+-|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99998865 788999999999999999875544 5678899999999999 5678888874 88999999764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-06 Score=87.90 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=137.2
Q ss_pred CCeEEEEECCCccEEEEEeCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCC
Q 001159 861 GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 861 dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 938 (1135)
+|+|..||..+|+.+....-- .....+.++. ++..+++++.++.|+.||..+|+.+..+.. .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 588999999999998887531 1222222332 345677778999999999999999887764 232222122 2455
Q ss_pred eEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCC
Q 001159 939 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDA 1016 (1135)
Q Consensus 939 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~ 1016 (1135)
.++.++.|+.+..+|..+++.+-......... . ..........++..+++ ..++.|..+|. +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-A---GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-C---STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccc-c---ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 56666688899999999998654321111111 0 11112222223666666 45899999998 7777666544221
Q ss_pred C-CCC------EEEEEEeeCCCEEEEEeCCCe-EEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1017 L-PAP------ISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1017 h-~~~------i~~~~~s~d~~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
. ... +.+-....++ .++.++.++. +.+ |+.+++.+-+..... .. . .... ++..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~----------~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKPISG----------IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEECSS-----------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEecCCC----------cc--C-Ccee-eCCEEEE
Confidence 1 111 2233333345 6666777775 555 999998663322110 11 1 1223 4568887
Q ss_pred EecCCcEEEEecCCCccccC
Q 001159 1089 GMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1089 g~~dg~v~~W~~~~~~~~~~ 1108 (1135)
++.++.|..||+.+++..|+
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998885
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-05 Score=84.39 Aligned_cols=217 Identities=17% Similarity=0.130 Sum_probs=137.5
Q ss_pred EEEEeec-CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEEcccceeeEEe
Q 001159 845 ACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 845 ~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~lasg~~dg~v~iwd~~~~~~~~~l 921 (1135)
.+++|.+ ++.++.+-- .+.|..|+..+++... +.... ...+++. + ++.+++ +... .+.++|..+++....+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETT-CEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcC-ceEEEecCCCcEEEEe
Confidence 3578888 555555544 7999999998876533 33222 7788888 5 665554 4444 4566699888644333
Q ss_pred cC-----cCCCeEEEEEcCCCCeEEEEcCC--------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 922 KG-----HQNRITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 922 ~~-----h~~~i~~l~~s~d~~~l~s~~~D--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.. .....+.+++.++|.+.++.... |.|..++.. ++. . ...... .....++|+||++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~-~~~~~~-------~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-T-VVADGL-------GFPNGIAFSPDGK 146 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-E-EEEEEE-------SSEEEEEEETTSS
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-E-EEecCc-------ccccceEECCcch
Confidence 21 34568899999999988887644 446666666 331 1 112211 2357999999999
Q ss_pred EEEEE--ecCeEEEEec--CCcee---eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee
Q 001159 989 HLLVV--HESQISVYDS--KLECS---RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1061 (1135)
Q Consensus 989 ~l~~~--~d~~v~vwd~--~~~~~---~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~ 1061 (1135)
.|+++ ..+.|..|++ .+..+ ..+.......+....+++..+|++.++....+.|.+++.+ |+.+..+....
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~- 224 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV- 224 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence 88764 5778888888 23211 2221111112347889999999988888889999999998 99888776441
Q ss_pred ccccccCCCCccEEEEecCCCCC-EEEE
Q 001159 1062 IPTYAVSNTAHPLVIAPHPSEPN-QIAL 1088 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~-~l~s 1088 (1135)
..+.+++|...+.+ +++|
T Consensus 225 ---------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 ---------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ---------SSEEEEEEESTTSSEEEEE
T ss_pred ---------CCEEEEEEECCCCCEEEEE
Confidence 35678888533434 4444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.7e-07 Score=92.02 Aligned_cols=214 Identities=10% Similarity=0.153 Sum_probs=146.1
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC--C-eeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCeEEEE
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 526 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~iw 526 (1135)
-|...|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|.+.|.+++.+.+ |..+.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEE
Confidence 37777888776543 3 899999999999998432 1 234456678888988887654 478888777 9999999
Q ss_pred eCcCCCceeEec--CCCCcEEEEEEcCC-CCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCCCE
Q 001159 527 LYDYLGSRVDYD--APGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~--~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~ 602 (1135)
|+++....-.+. .-.+.+..+ .++. -.-+++.+. -.++.+.++|..... ...-+.+-+-.+|.++.+.+-+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 998765442221 122222222 2221 122333322 247789999977543 444555544448999999999999
Q ss_pred EEEEeCCCeEEEEECCC------CceEEEEe-------CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 603 FLAAGDEFQIKFWDMDN------MNMLTTVD-------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
+++....|.|.-|.... .+....++ .........++.|+|++..+.+-+.|..|++++..++ .+.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 11111111 1122235689999999999999999999999999999 6776
Q ss_pred hccc
Q 001159 670 MLEG 673 (1135)
Q Consensus 670 ~~~~ 673 (1135)
.+..
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 6654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-05 Score=81.09 Aligned_cols=234 Identities=13% Similarity=0.159 Sum_probs=154.4
Q ss_pred CeeEEEEecCCCeEEEEEeccc-eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..-.++.+|+....+|.+-.-| ...+||..+++.+.... .-....|.|| -.|||||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4457888996666888887776 57899999998765310 1112224555 5799999999986
Q ss_pred e-----CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc----------------CCCcEEEEEcC
Q 001159 427 F-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----------------DDKMIKVWDVV 485 (1135)
Q Consensus 427 ~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~----------------~d~~i~iwd~~ 485 (1135)
- ..|.|-|||... .+....++..|.-.-..+.+.|||+.+.++-|+ .+-.+.+-|..
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3 357899999993 234555777777677789999999854444443 12356667778
Q ss_pred CCeeeee--e--cCCCCCeeEEEeeccCCccEEEEEEcCCe-------EEEEeCcCCCceeEecC-------CCCcEEEE
Q 001159 486 AGRKQYT--F--EGHEAPVYSVCPHHKESIQFIFSTAIDGK-------IKAWLYDYLGSRVDYDA-------PGNWCTMM 547 (1135)
Q Consensus 486 ~~~~~~~--~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~-------~~~~i~~~ 547 (1135)
+|+.+.. + .-|.-.|.-+++.+++ ..++..-..|. +-+++ .++....+.. -.+.+-++
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEE
Confidence 8887765 4 3377788888886653 44444433322 33332 2222222222 24578999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
++++++..+++.+. ..+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+
T Consensus 223 a~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-CccE
Confidence 99999999887763 4778999999999998876654 35566666665 555544 3443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.9e-06 Score=91.78 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccE------------EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKV------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~------------~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
......+++||||+++++++ +++|.|.|+.+.+. ..+..- .-.-...+|.+ +|....|-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 55667899999999999887 79999999988653 233221 22345678998 7888888889999
Q ss_pred EEEEEccc----------ceeeEEecCcCCC-----eEEEEEcCCCCeEEEEc
Q 001159 907 VQIYNVRV----------DEVKTKLKGHQNR-----ITGLAFSPTLNALVSSG 944 (1135)
Q Consensus 907 v~iwd~~~----------~~~~~~l~~h~~~-----i~~l~~s~d~~~l~s~~ 944 (1135)
|..|++.+ ...+..+.-|-.+ ..+=.-.|||++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999886 2344444433322 22222368999999864
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.3e-06 Score=91.64 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=100.7
Q ss_pred EeecCCCEEEEEeCCeEEEEECCC-----ccEEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccccee----
Q 001159 848 ALSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEV---- 917 (1135)
Q Consensus 848 ~~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~---- 917 (1135)
++.++|++... .+++|.|.|..+ .+.+..+. -......++++| ||+++++++ .+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34557887666 468899999988 45555554 455678999999 777665554 589999999987542
Q ss_pred --------eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC------CceeceeeeecCCCCCCCCCCceEEE-
Q 001159 918 --------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK------WEKLKSRFIQAPAGRQSPLVGETKVQ- 982 (1135)
Q Consensus 918 --------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~- 982 (1135)
+.+..- .......+|.++|....|...|..|..|+++. ++... ..+....-|. .+-++.
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~-~v~~k~dV~y----~pgh~~~ 433 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVD-PIVQKLDVHY----QPGHNHA 433 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCC-cceecccCCC----ccceeee
Confidence 333332 22345678999999999999999999999987 22111 1222222111 122222
Q ss_pred -----ECCCCcEEEEE----ecCe----------EEEEecCCceeecc
Q 001159 983 -----FHNDQTHLLVV----HESQ----------ISVYDSKLECSRSW 1011 (1135)
Q Consensus 983 -----~s~dg~~l~~~----~d~~----------v~vwd~~~~~~~~~ 1011 (1135)
-.|||+||++. .|+- -.+.|+++..+..+
T Consensus 434 ~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv 481 (635)
T PRK02888 434 SMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLV 481 (635)
T ss_pred cCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEE
Confidence 37999999983 2332 35677766655544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-05 Score=80.71 Aligned_cols=219 Identities=19% Similarity=0.209 Sum_probs=141.3
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe-cCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 413 ~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s-~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
++.|.+ ++.++++--..+.|..|+..++... .+.. .. ...+++. +++. ++.+..+ .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----~~~~-~~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----VIDL-PG-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEES-SS-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----EEec-CC-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578888 6777777777899999999886432 1221 22 7778887 6654 4444444 4556699888654
Q ss_pred eeecC-----CCCCeeEEEeeccCCccEEEEEEcC--------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 491 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
..... .....+.+++.+++ .+.++.... |.|..++.. .........-.....++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43322 34567788887754 666665543 456666665 33333333345678999999999888
Q ss_pred EEecCCCCCCeEEEEECCC-Ce-E--EEEeecccC--CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 558 SCGTSKEGESHLVEWNESE-GA-I--KRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~-~~-~--~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.+.. ..+.|..+++.. +. . .+.+..... .....++++.+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 367799988853 22 1 222221111 136789999999988887788999999988 888888887633
Q ss_pred CCCcceEEEc-CCCCEEEEEE
Q 001159 632 LPASPRLRFN-KEGSLLAVTT 651 (1135)
Q Consensus 632 ~~~v~~~~~~-~~~~~l~~~~ 651 (1135)
.+++++|. ++.+.|.+.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68999994 6666665544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-06 Score=81.47 Aligned_cols=95 Identities=21% Similarity=0.346 Sum_probs=71.9
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee-EEecCcCCCeEEEEEcC-CCCe
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSP-TLNA 939 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~i~~l~~s~-d~~~ 939 (1135)
+..+.|+++..+.+..-......|++++-+|...+++++|+.||.+-+||.+..... ..+..|..+|+.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 344555554333222212223349999999977788999999999999999877543 44789999999999998 4689
Q ss_pred EEEEcCCCcEEEEeCCC
Q 001159 940 LVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 940 l~s~~~D~~i~iwd~~~ 956 (1135)
|++++.||.+--||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999875
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=82.80 Aligned_cols=249 Identities=14% Similarity=0.160 Sum_probs=148.5
Q ss_pred hccCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
++.+|...|..++|||..+ ++..++.+..|+|.|+.+...+. .+..| ..+++++|.-|..+ +|+.|..+|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999888 78889999999999999975554 45556 78999999999876 8999999999999
Q ss_pred EEcCCCee-eeeecC--CCCCeeEEEeeccC----CccEEEEEEcCCeEEEEeCcCCCc--eeEecC-CCCcEEEEEEcC
Q 001159 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDA-PGNWCTMMAYSA 551 (1135)
Q Consensus 482 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~-~~~~i~~~~~s~ 551 (1135)
+|++..+- +..+.+ ...+|..++..+.+ .|.+++..+.+ +..|.+.-... ...... ..+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986432 223322 23345544432211 12344444433 33454432221 222222 234555666766
Q ss_pred CCCEEEEEecCCCCCCeEE----EEECCCCeEEEEee----cccCCce---eEEEecCCCCEEEE-EeCCCeEEEEECCC
Q 001159 552 DGTRLFSCGTSKEGESHLV----EWNESEGAIKRTYS----GFRKRSL---GVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~----~~~~~~v---~~i~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
..+.++....++..-.+++ -.|-.+|..+..-+ +.....+ ..+.-.++.++++. ++..+.+.+||+.+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666655443211111111 11223333332211 1111011 11222445566655 55668899999999
Q ss_pred CceEEEEeCCCCCCCcceEEEcC-C-CCEEEEEECCCcEEEEEcC
Q 001159 620 MNMLTTVDADGGLPASPRLRFNK-E-GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~-~-~~~l~~~~~dg~i~iwd~~ 662 (1135)
++.++++... .+|..+.... + +.+|++-++| .++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTDD-RVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhheecc-eEEEEecC
Confidence 9999999865 2566665543 2 4466666554 88888654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-05 Score=85.23 Aligned_cols=219 Identities=16% Similarity=0.132 Sum_probs=139.1
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeecc
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~ 508 (1135)
+|+|..||..+|+.+-.. .+..-.....+.. .+++. .+++++.++.|..||..+|+.+.++.. ..++..... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~-~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVATA-VPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEETE-EEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccceE-EEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-
Confidence 688999999888766533 2211112222222 33455 567778899999999999999887764 222211111 1
Q ss_pred CCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCC---CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
.+..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|+.+|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2257777888999999999999888763 3221 11222233334777777753 7889999999999998887
Q ss_pred cccCCc---------e-eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 585 GFRKRS---------L-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 585 ~~~~~~---------v-~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
...... + ..+.+. ++ .++.++.++.+..+|+.+++.+.... .. .+.. ....++..|++++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred cCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCC
Confidence 744211 1 222233 34 77777777754444999999765333 11 2222 1346777888888999
Q ss_pred cEEEEEcCCCch
Q 001159 655 GIKILANSDGVR 666 (1135)
Q Consensus 655 ~i~iwd~~~~~~ 666 (1135)
.+..||..+++.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999999843
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-05 Score=94.72 Aligned_cols=273 Identities=7% Similarity=0.039 Sum_probs=161.1
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..| .++.|..++..++++...|.|.+-|..+ ..... .+. - ...|.+++||||
T Consensus 69 ~~i-~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~ei---vg~-v-d~GI~aaswS~D 120 (1265)
T KOG1920|consen 69 DEI-VSVQFLADTNSICVITALGDIILVDPET----------------------LELEI---VGN-V-DNGISAASWSPD 120 (1265)
T ss_pred cce-EEEEEecccceEEEEecCCcEEEEcccc----------------------cceee---eee-c-cCceEEEeecCC
Confidence 567 9999999999999999999988864332 21110 110 1 788999999999
Q ss_pred CCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-----eeEEec-----
Q 001159 853 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-----VKTKLK----- 922 (1135)
Q Consensus 853 g~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-----~~~~l~----- 922 (1135)
++.++..+.+..-++...+..++....-+.+ -.+ .++ .+.+++...=.-+.-..|+ .+...+
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d------~~~-~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDAD------DER-KSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhccccccc------ccc-ccc-cceecccccceeeecchhhhcccccccccccccch
Confidence 9999999854444444445544433221110 011 122 2233333211111111111 110000
Q ss_pred CcCCCeEEEEEcCCCCeEEEEc----CC-CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE----E
Q 001159 923 GHQNRITGLAFSPTLNALVSSG----AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV----V 993 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~~~l~s~~----~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~ 993 (1135)
.-.+.=++|.|--||+++|+.. .+ +.|++||-+ +.. ....... ...-.+++|-|.|.++++ +
T Consensus 193 ~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L------ns~se~~--~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 193 EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL------NSTSEPV--EGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred hhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh------hcccCcc--cccccceeecCCCCeEeeeeecC
Confidence 1122335789999999998732 23 789999988 331 1111000 023368999999999998 2
Q ss_pred ecCeEEEEecCCceeeccCCCCCC-CCCEEEEEEeeCCCEEEE---EeCCCeEEEEECCCceeeeeeCCceeccccccCC
Q 001159 994 HESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYA---GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSN 1069 (1135)
Q Consensus 994 ~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~d~~~l~~---~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
+|+.|.+|.-+|-....+...... ..+|..++|..++..||+ ......|++|-+.+....-.-. ...+..
T Consensus 264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~---- 337 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK---- 337 (1265)
T ss_pred CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc----
Confidence 577899999877666554433222 344999999999999988 4455559999998865442211 111111
Q ss_pred CCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1070 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1070 ~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
. -++|+|.....|..-..+|...+.+.
T Consensus 338 -~---~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 338 -A---LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred -c---cccccCCCceeEEEEecCCcEEEEEE
Confidence 1 17788866666666556776555443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00012 Score=71.38 Aligned_cols=144 Identities=8% Similarity=0.072 Sum_probs=93.8
Q ss_pred EEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001159 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 432 (1135)
..-||.+.+++.|+..+.+.--|..+|... |+.. -...|-+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~-------We~i-------------lg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLI-------WEAI-------------LGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEE-------eehh-------------hCceeeeeeEE-ECCEEEEEEccCcE
Confidence 344566778999999999998899888754 2210 11223222222 57789999999999
Q ss_pred EEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCcc
Q 001159 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 433 ~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1135)
++.+.++|+.......+..- . ......+++. ++..|+.|++.+.-|..+..++...+...+.-.+-++.|.+ .
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~--~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD--G 148 (354)
T ss_pred EEEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCC--c
Confidence 99999999766543332211 1 1234456777 89999999999999999999998876444333333444432 3
Q ss_pred EEEEEEcCCeEE
Q 001159 513 FIFSTAIDGKIK 524 (1135)
Q Consensus 513 ~l~s~s~dg~i~ 524 (1135)
.|+.+...|.+.
T Consensus 149 sly~a~t~G~vl 160 (354)
T KOG4649|consen 149 SLYAAITAGAVL 160 (354)
T ss_pred eEEEEeccceEE
Confidence 444455555444
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0055 Score=71.62 Aligned_cols=224 Identities=12% Similarity=0.118 Sum_probs=120.7
Q ss_pred EEEEEeCCeEEEEECCCccE--EEEEeCCCCCeEEEEEecCCCcEEEEEeC-----------C---CcEEEEEcccceee
Q 001159 855 YVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGME-----------D---SSVQIYNVRVDEVK 918 (1135)
Q Consensus 855 ~la~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~lasg~~-----------d---g~v~iwd~~~~~~~ 918 (1135)
.++++..+.+++.-++.-+. ++++. -......+++.+ ....+++.+. . ..++++|-+|-+.+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 45556666677766654322 23332 222345566655 3333433321 1 23667776665544
Q ss_pred EEec--CcC--CCeEEEEEcCC-CCeEEEEc----------CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEE
Q 001159 919 TKLK--GHQ--NRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 919 ~~l~--~h~--~~i~~l~~s~d-~~~l~s~~----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
...+ ... -.|.+..|..| +.+++.|. ..|.|.++.+...+.+....-....| ...+.
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G--------av~aL 835 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG--------AVYAL 835 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc--------ceeeh
Confidence 3322 111 12445558888 66777664 23678888777643332221111111 12233
Q ss_pred CCCCcEEEEEecCeEEEEecCCc-eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEE--ECCCceeeeeeCCce
Q 001159 984 HNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF--DAETLRFRCRIGPSA 1060 (1135)
Q Consensus 984 s~dg~~l~~~~d~~v~vwd~~~~-~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vw--d~~~~~~~~~~~~~~ 1060 (1135)
-.-...++++-+..|++|+.+.+ .++.- -.|..++..+...-.|..+++|.-=++|.+. +-..|.+.-..+ .
T Consensus 836 ~~fngkllA~In~~vrLye~t~~~eLr~e---~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D 910 (1096)
T KOG1897|consen 836 VEFNGKLLAGINQSVRLYEWTTERELRIE---CNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--D 910 (1096)
T ss_pred hhhCCeEEEecCcEEEEEEccccceehhh---hcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--h
Confidence 33344556667788999999443 44432 3347889999999999999999888877664 444444443222 1
Q ss_pred eccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1061 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
+. +.+.+++.+- +++..+-+..+|.+++-...+
T Consensus 911 ~~-------p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 911 YN-------PNWMTAVEIL--DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred hC-------ccceeeEEEe--cCceEEeecccccEEEEEecC
Confidence 11 1233344444 334555667778888776554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=90.36 Aligned_cols=166 Identities=17% Similarity=0.216 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeE-EEEEEcCCCcEEEEEcCCCe
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQL-CIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~-~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+..+|++++||++..+....++++..... .+.... ..-...-+++.|..+.... .....++...+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44566788888999888888877777765433 111111 1122334455555555431 23344566677778776655
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+. .+-||-..++.++++|++ ++|+++..|..|++-.+...-.+..+ -+|..-|..++.-++. .|++++ ||+
T Consensus 144 ~~-~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~s----GD~ 215 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGS----GDK 215 (390)
T ss_pred cc-hhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecC----CCC
Confidence 54 445899999999999876 89999999999999877655544444 4588899999987654 477776 489
Q ss_pred eEEEEECCCCeEEEEeec
Q 001159 568 HLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~ 585 (1135)
+|++||+.+|+.+.++..
T Consensus 216 tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cEEEEecccCCcccccch
Confidence 999999999998876654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0058 Score=71.45 Aligned_cols=585 Identities=10% Similarity=0.058 Sum_probs=277.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----C
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----G 420 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~ 420 (1135)
..+-..|+.+-++| ++++|+.-|.=.+-.+.+-....++. .....+ ..-++|..+..-.. +
T Consensus 305 e~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~------------~ilet~-~NLgPI~Dm~Vvd~d~q~q 369 (1096)
T KOG1897|consen 305 ETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV------------VILETF-VNLGPIVDMCVVDLDRQGQ 369 (1096)
T ss_pred CcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh------------hhhhhc-ccccceeeEEEEeccccCC
Confidence 44455677777888 57788877766666665433221100 000001 13347777766442 2
Q ss_pred CeEEEEe---CCCeEEEEEeCCCCceeeeeEeecccCCEEEEE--EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 421 LMLGVAF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 421 ~~las~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
..+++|+ .||++++....-+-.......+.| -..++.+. +.++-.. +|+.+-.+ .-++..+...-......+
T Consensus 370 ~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~g 446 (1096)
T KOG1897|consen 370 GQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDPG 446 (1096)
T ss_pred ceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEecccc
Confidence 3566654 488999986544322222224555 44567776 4443332 33333222 223334332211112222
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
-......+..+... |+.|+-. ....||+++-. .....+.... .++..+.+.+...++.++. ++.+...++.
T Consensus 447 f~~~~~Tif~S~i~-g~~lvQv-Ts~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i~ 517 (1096)
T KOG1897|consen 447 FSTDEQTIFCSTIN-GNQLVQV-TSNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEIE 517 (1096)
T ss_pred ccccCceEEEEccC-CceEEEE-ecccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEee
Confidence 22333333333221 1222222 22446666433 2222333333 3333344444455555542 4566666766
Q ss_pred CCeEEEEeecccCCceeEEEecCCC------CEEEEEeCCCeEEEE-ECCCCceEEEEeCCCC--CCCcceEEEcCCCCE
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTR------NRFLAAGDEFQIKFW-DMDNMNMLTTVDADGG--LPASPRLRFNKEGSL 646 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~------~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 646 (1135)
.+.+....+......|.|+.++|-| ++++.|..+..+.+. -..+...+........ ...|.-..|-.|..+
T Consensus 518 ~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 518 DGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceE
Confidence 6654333333333478999999742 256777655554443 3333333333222111 123444455567889
Q ss_pred EEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|.++..||.+.-+.+....-.+...+...- ...+..+..+.+..
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~l----------Gt~P~~Lr~f~sk~-------------------------- 641 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTL----------GTQPISLRTFSSKS-------------------------- 641 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEcccccccc----------CCCCcEEEEEeeCC--------------------------
Confidence 999999999887755433111111100000 00000111000000
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC-CcceeEecccceeeeEEeccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS-GLSLLALASNAVHKLWKWQRT 805 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d-g~~l~~~~~dg~i~iw~~~~~ 805 (1135)
....-...|.-.++.+..+.+.+-.+.- +.. . .-..|+.+ ..--++....+.+++-.+..
T Consensus 642 ~t~vfa~sdrP~viY~~n~kLv~spls~------------kev---~---~~c~f~s~a~~d~l~~~~~~~l~i~tid~- 702 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIYSSNGKLVYSPLSL------------KEV---N---HMCPFNSDAYPDSLASANGGALTIGTIDE- 702 (1096)
T ss_pred ceEEEEeCCCCEEEEecCCcEEEeccch------------HHh---h---hhcccccccCCceEEEecCCceEEEEecc-
Confidence 0001111122222222233332222211 000 0 00111111 11122233334455543321
Q ss_pred cCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe------------C---CeEEEEECC
Q 001159 806 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------G---GKVSLFNMM 870 (1135)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~------------d---g~i~vwd~~ 870 (1135)
...-...+ .+. ......+++.+....+++.+ . ..++++|-.
T Consensus 703 ------------------iqkl~irt--vpl----~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n 758 (1096)
T KOG1897|consen 703 ------------------IQKLHIRT--VPL----GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN 758 (1096)
T ss_pred ------------------hhhcceee--ecC----CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence 00000111 111 33445555555344443332 1 137788877
Q ss_pred CccEEEEEeCC-C---CCeEEEEEecCCCcEEEEEe----------CCCcEEEEEcccceeeEEecC--cCCCeEEEEEc
Q 001159 871 TFKVMTMFMSP-P---PAATFLAFHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKLKG--HQNRITGLAFS 934 (1135)
Q Consensus 871 ~~~~~~~~~~h-~---~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~--h~~~i~~l~~s 934 (1135)
+.+.++..+-. . -.|.++.|..|.+.++++|+ ..|.|.+|....++.++.+.. -.+.+.++..
T Consensus 759 Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~- 837 (1096)
T KOG1897|consen 759 TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE- 837 (1096)
T ss_pred ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-
Confidence 77665543211 1 23555668874478888886 357888888877443433322 2345555543
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe-cCeEEEEec---CCceeec
Q 001159 935 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS---KLECSRS 1010 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~v~vwd~---~~~~~~~ 1010 (1135)
-+|++||.- ...|+++++.+.+.+. .-..+. .++..+...-.|..++++. -+.+.+... ++.....
T Consensus 838 fngkllA~I--n~~vrLye~t~~~eLr-----~e~~~~---~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERELR-----IECNIS---NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccceeh-----hhhccc---CCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 267777654 5679999999875332 333333 5678888888898888863 455555444 3333322
Q ss_pred cCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1011 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1011 ~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
..+.++..++++.+-.+..++. +..+|.+.+-..++
T Consensus 908 --ArD~~p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 908 --ARDYNPNWMTAVEILDDDTYLG-AENSGNLFTVRKDS 943 (1096)
T ss_pred --ehhhCccceeeEEEecCceEEe-ecccccEEEEEecC
Confidence 2345577889999877776655 45788888877653
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.3e-07 Score=91.42 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=123.5
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~ 431 (1135)
++||-+-.-+-++.+.+-.|-+-|+++|..-. + ..++.|.++.|...+.++..|..+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCc
Confidence 36664322222444557788999999885432 2 26678999999999999999999999
Q ss_pred EEEEEeCCCCc--eeeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCCCee---eeeecCCCCCeeEEEe
Q 001159 432 VHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 432 i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~i~~ 505 (1135)
|..+|+..+.. ..+...+ .|...|+++.... +++ +|++.+.+|.|++||++.-++ +.++.||-..-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999986511 1111122 4899999999887 566 788999999999999987666 8889999766665555
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 540 (1135)
+-++....+++++.|-..|+|.++.+....+++..
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55555578999999999999999988777665543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-05 Score=84.67 Aligned_cols=266 Identities=15% Similarity=0.207 Sum_probs=150.9
Q ss_pred ecCCCeEEEEE--------eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 355 sp~g~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
|||++++|+.- +..+.+.|||+.+++... +......+....|||+|+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888665522 234689999999876442 11225678899999999999998
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeec-------c---------cCCEEEEEEecCCCeEEEEEEc-CCCc-----------
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKM----------- 478 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~v~~s~d~~~~~l~s~~-~d~~----------- 478 (1135)
. ++.|.+++..++...+. +..| - -+.-..+.||||+++ |+... ++..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 5 56799998877643321 1122 0 112356889999995 33322 1222
Q ss_pred ------------------------EEEEEcCCCeeee-e-e---cCCCCCeeEEEeeccCCccEEE--EEEcCC---eEE
Q 001159 479 ------------------------IKVWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIF--STAIDG---KIK 524 (1135)
Q Consensus 479 ------------------------i~iwd~~~~~~~~-~-~---~~h~~~v~~i~~~~~~~~~~l~--s~s~dg---~i~ 524 (1135)
+.|+|+.+++... . . ..-...+..+.|.+++ ..|+ ..+.+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 2344554444321 1 1 1233456677777654 4232 233332 366
Q ss_pred EEeCcCCCceeEecC-CCCcE---EEEEEc-CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce-eEEEecC
Q 001159 525 AWLYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~-~~~~i---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~i~~s~ 598 (1135)
++|..++........ ...+| ....+. +++..++..+. +++-.+|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 667776655443322 22222 244554 78887776664 667788999998877744 4443332 45 4577888
Q ss_pred CCCEEEE-EeC----CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 599 TRNRFLA-AGD----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 599 ~~~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
+++.++. +.. ...|+.-++..+..+..+...... ...+.|||++++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 8877765 443 235666666634555666654332 158999999998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0015 Score=63.93 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=93.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
.+++.||..+.+..-|..++........ +.+|.+-+.- -|++++.|.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5777888888888888777766554322 2233332222 4667887775 77899999999998888876554 22
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEE
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 660 (1135)
......+++..+++|+.|+..+..|.++...+...+..+.. ..+-++.| ++.+.+ +...|.+.--.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~-a~t~G~vlavt 163 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYA-AITAGAVLAVT 163 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEE-EeccceEEEEc
Confidence 23556788999999999999999999999999887765542 23444556 444443 44444444333
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.7e-07 Score=62.75 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.1
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd 953 (1135)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-06 Score=89.71 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=150.0
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---ceeeEEecCcCCCeEEEEEcCCCCeEEEEcC-CCcEEEEeCCC
Q 001159 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---DEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDK 956 (1135)
Q Consensus 881 h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iwd~~~ 956 (1135)
|.+.|+.+.-+. .+++.+++.||.++.|.-.. -+.+..+..|-+.|.+++.+.|+.++.|++. |..++++|+.+
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 777888887764 67999999999999997442 2455667889999999999999999999887 99999999998
Q ss_pred CceeceeeeecCCCCCCCCCCceEEEECCCC---cEEEEE--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCC
Q 001159 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ---THLLVV--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGL 1031 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~ 1031 (1135)
-.......+.-+.+ .+..+...| ..++++ .++.+.|+|-.+..........-|..+|..+.+.+-+.
T Consensus 86 ~DminmiKL~~lPg--------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG--------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cchhhhcccccCCC--------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 66443222222222 122222223 245553 67899999983333222222344699999999999999
Q ss_pred EEEEEeCCCeEEEEECCC------ceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCcc
Q 001159 1032 LVYAGFCDGAIGVFDAET------LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~ 1105 (1135)
.+++....|.|.-|..+. .+....+.....+ -........+.++.|+| +|..+.+-+.|..|+++++++++.
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchh-hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchh
Confidence 999999999999999883 1111111111100 00112224567899999 789999999999999999999884
Q ss_pred c
Q 001159 1106 K 1106 (1135)
Q Consensus 1106 ~ 1106 (1135)
.
T Consensus 236 v 236 (558)
T KOG0882|consen 236 V 236 (558)
T ss_pred h
Confidence 3
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0004 Score=72.82 Aligned_cols=205 Identities=19% Similarity=0.187 Sum_probs=126.1
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceeeEE-
Q 001159 846 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK- 920 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~- 920 (1135)
.+++|.||+++.+.. .-.|.|.|+..++.+.++.... +..+--+ +++-+.+-+.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 357888999888875 4679999999999988886332 3333222 34567788899999998888 4544322
Q ss_pred ---ecCcCCCe-EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC---CC-CCCCceEEEECCCCcEEEE
Q 001159 921 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR---QS-PLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 921 ---l~~h~~~i-~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~~~s~dg~~l~~ 992 (1135)
|..-.+++ ..-+++..+..++-.+-+|.|+--|+................. .. ...+-.-+++++..+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 2334555555666677888888888876653322222211000 00 0133456888887776666
Q ss_pred -Ee---c-------CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCC-EEEEE-eCCCeEEEEECCCceeeeeeCC
Q 001159 993 -VH---E-------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 993 -~~---d-------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~~~-~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
-+ + ..|-+||+ +.+.+..+.. ..++.+++.|.|.+ +|++. ..++.+.|||..+|++++++..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 22 1 23777787 7777777654 34678999999887 55444 4689999999999999998773
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=7e-05 Score=78.32 Aligned_cols=285 Identities=9% Similarity=0.088 Sum_probs=159.5
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----------CCCeEEEEECCCCceEEEEeCCCC-----
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1135)
++++++|..+++.+-.+..... ..+..+|+++.+++++ ..-.|.+||..+..+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4699999999998888776543 3466899999998754 344699999999988887765432
Q ss_pred CCCcceEEEcCCCCEEEEEEC--CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 709 (1135)
....+..+++.|++++++... ...|.|.|+... +....+.-.... .
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~--------------~----------------- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCW--------------L----------------- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEE--------------E-----------------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEE--------------E-----------------
Confidence 123456788888888776543 456788888766 333332211000 0
Q ss_pred CCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee
Q 001159 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~ 789 (1135)
.....+..+...+.||.+.-..++.......... . ........+...-++...+..++
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~-~F~~~~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K-VFDPDDDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E-ESSTTTS-B-S--EEETTTTEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeEeec-c-ccCCCCcccccccceECCCCeEE
Confidence 0011223455556677766666664322221111 1 11111122212334444554455
Q ss_pred EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe----CC---
Q 001159 790 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG--- 862 (1135)
Q Consensus 790 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~----dg--- 862 (1135)
-.+-+|.++--++......+ ..-|...+......... .+.-.-+++++....|.+-- ++
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~Wr-----PGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGWR-----PGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTEE-----E-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred EEecCCEEEEEeccCCcccc---------cCcccccCccccccCcC-----CcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 56667777766655432111 11222221110000000 23334577777655554432 22
Q ss_pred ----eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceeeEEecC
Q 001159 863 ----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 863 ----~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
.|.++|+.+++.+..+.. ...+.+|+++.++..+|.+.+ .++.+.+||..+|+.+.++..
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 399999999999999873 236789999996666776554 578999999999999988874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=88.23 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=122.4
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC----Cc
Q 001159 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GS 533 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~ 533 (1135)
.++|+-+-.... ++.+.+..|-+-|+++|... .|. ..+.|.++.|+... ++++.|+.+|.|..+|++.. ..
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCc
Confidence 346665433323 55666778889998888653 343 56778888887755 79999999999999999876 33
Q ss_pred eeEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccCCce-eEEEecCCCCEEEEEeC
Q 001159 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSL-GVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 534 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v-~~i~~s~~~~~l~~~~~ 608 (1135)
....-.|+..|+++..-. ++++|++.+. +|.|.+||.+--+. ++++.||-...- .-+-..+....++++|.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 444555788888887766 6777777654 88999999986655 899999865221 12345667788999999
Q ss_pred CCeEEEEECCCCceEEEEeCC
Q 001159 609 EFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|...|||.++++.++.+++..
T Consensus 367 DcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeEEEEEecccCceeeccCCC
Confidence 999999999999999988755
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-06 Score=94.25 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=133.7
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEE
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-|.. +++.+.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 455677777 788999999998888877655556776766 5689999999999999999999999999999999987
Q ss_pred EEEcCCCCeEEEEcC---------CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC--cEEEEEecCeEE
Q 001159 931 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVVHESQIS 999 (1135)
Q Consensus 931 l~~s~d~~~l~s~~~---------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~d~~v~ 999 (1135)
+.. .|+.|+++|. |..|+|||+..-+.+.. ++.+.+ ..-+.|.|.- +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6889999874 66799999987654332 222222 2456666653 344447788888
Q ss_pred EEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 1000 VYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 1000 vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
+-|. ........... .-+..+.++.+|++|..||.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8884 21111111111 1145599999999999999999999999998
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0001 Score=87.36 Aligned_cols=278 Identities=11% Similarity=0.173 Sum_probs=159.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.+.|.++.|.-++.. +..+...|.|.+-|.++..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 358999999999985 4557789999999887764332 2335678999999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeec---ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-eeeecCCCCCee
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~---h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1135)
.+..+++.+.+-.- ..+... .+.. ..+....+-|-....+ +-|+ .|.....+...... .... .-.+.=+
T Consensus 127 iT~~~tll~mT~~f-~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDF-EPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQI-EQDDHKT 199 (1265)
T ss_pred EeCCcEEEEEeccc-cchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccch-hhccCCc
Confidence 99988887755321 111100 1100 0112223344332221 1111 11111111000000 0000 1122234
Q ss_pred EEEeeccCCccEEEEE-----EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 502 SVCPHHKESIQFIFST-----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
+|+| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ ++.|.++..+
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN- 274 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN- 274 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence 5666 5566888873 223789999876 3222222223334568999999999998775433 5578888743
Q ss_pred CeEEEE----eecccCCceeEEEecCCCCEEEE---EeCCCeEEEEECCCCce--EEEEeCCCCCCCcceEEEcCC-CCE
Q 001159 577 GAIKRT----YSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKE-GSL 646 (1135)
Q Consensus 577 ~~~~~~----~~~~~~~~v~~i~~s~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~ 646 (1135)
|-.-.. +..... .+..++|+.++..|++ ......|++|...+... .+.+..... .-+.|+|. ...
T Consensus 275 GL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKT 349 (1265)
T ss_pred CccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCcee
Confidence 332222 222222 3889999999999887 45556699999987553 333433322 22788883 334
Q ss_pred EEEEECCCcEEEEEc
Q 001159 647 LAVTTSDNGIKILAN 661 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~ 661 (1135)
+.+-..+|...++++
T Consensus 350 L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEecCCcEEEEEE
Confidence 444446676666655
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-06 Score=86.47 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHH
Q 001159 6 RELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIR 77 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~ 77 (1135)
.-+.|+|..||..+||.++|..|-++|.+. .++...++++++|+...|+.-...-+..-. +....+.|.+.
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~lR 194 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQLR 194 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHHH
Confidence 346899999999999999999999999986 237888999999999888765543211100 11224889999
Q ss_pred HHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccc
Q 001159 78 KQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQ 126 (1135)
Q Consensus 78 ~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 126 (1135)
.|.|+||+..+++.+|+.+.++.+.|...-+.++++....++.++....
T Consensus 195 lQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 195 LQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 9999999999999999999999999998888899999999999876543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-05 Score=87.72 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=130.5
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC-eEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCCceec-
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 961 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s~~~D~~-----i~iwd~~~~~~~~- 961 (1135)
+|++ ++..+|.|+.+|.|.+++- +-+.++.++.+... |+.+-...+..+|++.+.|+. ++||+++.-+.-.
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4556 6778999999999988873 34555778887777 555554445579999988764 9999998653322
Q ss_pred eeee--ecCCCCCC--CCCCceEEEECCCCcEEEEE-ecCeEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEE
Q 001159 962 SRFI--QAPAGRQS--PLVGETKVQFHNDQTHLLVV-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 962 ~~~~--~~~~~~~~--~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l 1033 (1135)
..++ ....++.. ...+++.++.|.+-+.+|+| .+|.|..+.- ..+..+.-. .+.-..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-SHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-eccCCCCceeeEEecCCcee
Confidence 2232 11111111 13678999999999999997 6888888865 111111111 12227899999999999873
Q ss_pred EEEeCCCeEEEEECCCcee--eeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001159 1034 YAGFCDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1034 ~~~~~dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~ 1108 (1135)
+.+.+-..|.+|.+. |+. .+.+. .++...-|.++++..+. +++++. ..|.+|+...-+.-|.
T Consensus 187 lFv~Tt~~V~~y~l~-gr~p~~~~ld----------~~G~~lnCss~~~~t~q-fIca~~-e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS-GRTPSLKVLD----------NNGISLNCSSFSDGTYQ-FICAGS-EFLYFYDSDGRGPCFA 250 (933)
T ss_pred EEEEecceeEEEEec-CCCcceeeec----------cCCccceeeecCCCCcc-EEEecC-ceEEEEcCCCcceeee
Confidence 333455689999998 443 22233 22355568888774433 444333 4788888876554443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=59.92 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 872 ~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
++++.++.+|.+.|++|+|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.8e-05 Score=85.36 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=140.3
Q ss_pred EEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEeCCCc-----EEEEEcccc----
Q 001159 847 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSS-----VQIYNVRVD---- 915 (1135)
Q Consensus 847 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~~dg~-----v~iwd~~~~---- 915 (1135)
-++++.+..+|.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.+.|+. |+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45788899999998 899888874 45666888888777 55555554 5578888887754 899998742
Q ss_pred --eeeE--EecC-----cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 916 --EVKT--KLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 916 --~~~~--~l~~-----h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+++. .+.. ...++.+++.|.+-+.+|.|-.||.|..+.-+--.....+......+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 2231 1222 245788999999999999999999999885443222222222222332 68999999999
Q ss_pred CcE-EEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 987 QTH-LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 987 g~~-l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
++- +.++.-..|.+|.++++. ......+.|+....|..|++...-+++++ +..+.+|+.+....-..+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 987 445667789999997666 23333456688899999987655455553 4579999998554444444
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.002 Score=69.18 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=140.2
Q ss_pred EEEecCCCeEEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccCCC-cceEEEEEcCCCCeEEEEeC
Q 001159 352 MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las~~~ 428 (1135)
=+|.+||++||+++..|| .+.+-|+.+++... |.... .......++|+++.++-...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 368899998999888777 45566777776543 22221 22334667898898877767
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe--cCCCeEEEEEEc----------------------CCCcEEEEEc
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG----------------------DDKMIKVWDV 484 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~ 484 (1135)
...++-.|+.+.+.. . .+......+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 778988999986543 2 333345555456664 3454 333221 1234555677
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE---cCCe-EEEEeCcCCCcee-EecC--CCCcEEEEEEcCCCCEEE
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGK-IKAWLYDYLGSRV-DYDA--PGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~-i~iwd~~~~~~~~-~~~~--~~~~i~~~~~s~~~~~l~ 557 (1135)
.+|+....+. -...+.-+.|+|..+ ..|+-|- .|.. -|||-+++..... .+.. ....+..=-|.|||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7777544443 456677888998764 3444432 2232 3667665543322 2211 233555567999999887
Q ss_pred EEec-CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC----------------CeEEEEECCCC
Q 001159 558 SCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNM 620 (1135)
Q Consensus 558 ~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----------------g~i~iwd~~~~ 620 (1135)
..+. .+..+..|.-+|+.+++........ ...-+-.++||+.++-=+.| --|+++++..+
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 5443 3334567888899988654432221 23345567888877763322 15677888776
Q ss_pred ceEEEEeCC--------CCCCCcceEEEcCCCCEEEEEEC-CCcEEEEEc
Q 001159 621 NMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 621 ~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 661 (1135)
......... .....-.-..|+|||++++..|+ .|...||-+
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 643222211 00112246899999998887665 666666643
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.5e-06 Score=78.90 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=97.7
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHH
Q 001159 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1135)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1135)
...++++|++|+++.|+..+....+.-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998874332111 1248899999999999999999999999999887764335678888888
Q ss_pred hhcccCccc--hhhhccCCCchhHHHHHHHHHHhhcccCcccccccCCCCCc-hHHHHHHHHHHHHH
Q 001159 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNW 181 (1135)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~ 181 (1135)
++..++..+ ...+..+-+. ..|+.+.+.+.+.+-...- +| ...|+.++++....
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 888776554 3333333333 7788999988887654221 22 45688888876544
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00047 Score=76.96 Aligned_cols=206 Identities=14% Similarity=0.130 Sum_probs=108.6
Q ss_pred EEEEEecCCcceeEecc-cceeeeEEeccccCC-------------CCCcccccccCeeecCCCCcceeccCCC--CCCC
Q 001159 777 VRLIYTNSGLSLLALAS-NAVHKLWKWQRTERN-------------PSGKATANVAPQLWQPPSGTLMTNDINE--SKPT 840 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~ 840 (1135)
..+.|||||++|+...- +..+..+.+...... ..|.......+.+++..++......... ..-
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~- 182 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ- 182 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS-
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC-
Confidence 55677888877776654 344554444322111 1122223334556777777653322220 001
Q ss_pred CCceEEEEeecCCCEEEEE-e--C---CeEEEEECCCccEEEEEeC-CC---CCeEEEEEe-cCCCcEEEEEeCCCc--E
Q 001159 841 EESAACIALSKNDSYVMSA-S--G---GKVSLFNMMTFKVMTMFMS-PP---PAATFLAFH-PQDNNIIAIGMEDSS--V 907 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~-~--d---g~i~vwd~~~~~~~~~~~~-h~---~~v~~l~~s-p~~~~~lasg~~dg~--v 907 (1135)
...+..+.|+++++.|+.. . + -.+.+.|..++.+...... .. ..-....|. ++++.+|.....||- |
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 6778999999999944443 3 2 2377788887665433322 22 223456665 646677777777775 4
Q ss_pred EEEEcccceeeEEecCcCCCeEE-EEEcCCCCeEE-EEcCCC----cEEEEeCC-CCceeceeeeecCCCCCCCCCCceE
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALV-SSGADA----QLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETK 980 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~-l~~s~d~~~l~-s~~~D~----~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 980 (1135)
++++..++. ...+....-.|+. +.++++++.+. ++..+. .+..-++. .++. .++....+. ...
T Consensus 263 y~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~------~~~ 332 (353)
T PF00930_consen 263 YLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLTCEDGD------HYS 332 (353)
T ss_dssp EEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESSTTSST------TEE
T ss_pred EEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---EeccCCCCC------ceE
Confidence 455555555 4456555556755 67788876554 554422 34444555 3331 223222211 148
Q ss_pred EEECCCCcEEEEE
Q 001159 981 VQFHNDQTHLLVV 993 (1135)
Q Consensus 981 ~~~s~dg~~l~~~ 993 (1135)
+.|||+|++++..
T Consensus 333 ~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 333 ASFSPDGKYYVDT 345 (353)
T ss_dssp EEE-TTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999999999873
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0005 Score=76.97 Aligned_cols=287 Identities=11% Similarity=0.093 Sum_probs=163.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...|.--+++..++ +++.|+..|.+++|+-.+++....+ ..+..+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 344566667777887 6888999999999998887655321 234556677888999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeE--e-ecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe----eeeeecCCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLE--I-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHE 497 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~--l-~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~ 497 (1135)
.|+..|.|.++-+..+........ . ..|...|++++|++++. .+++|...|.|..-.+.+.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998877433222111 1 23678899999999999 79999999999998887721 112233345
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-C-cEEEEEEcCC-----CCEEEEEecCCCCCCeEE
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-N-WCTMMAYSAD-----GTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~-~i~~~~~s~~-----~~~l~~~~~~~~~~~~i~ 570 (1135)
+.|-.+.... .+|+.++.-.. .+++++.......-+... + .-...+|-|. ...|+++- --.+
T Consensus 171 s~IVQlD~~q----~~LLVStl~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR------PG~R 239 (726)
T KOG3621|consen 171 SEIVQLDYLQ----SYLLVSTLTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR------PGLR 239 (726)
T ss_pred cceEEeeccc----ceehHhhhhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec------CCCc
Confidence 6666665432 23333322222 334444332211111111 1 1223344332 23444442 2367
Q ss_pred EEECC-CCeEEEEeeccc------CC--ceeE---------------EEec----CCCCEEEEEeCCCeEEEEECCCCce
Q 001159 571 EWNES-EGAIKRTYSGFR------KR--SLGV---------------VQFD----TTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 571 ~wd~~-~~~~~~~~~~~~------~~--~v~~---------------i~~s----~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
+|..+ .|..++++.-.. .. .+.+ +.|. -.+.++++-++-| |+|+|..+...
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceE
Confidence 78765 355444432100 00 0000 1110 1122344444444 88888876554
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
+.-.... + .|..+ +..++-|++-..|+.+++..+.+..+.+.
T Consensus 319 ~l~se~~-~--DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr~l~ 360 (726)
T KOG3621|consen 319 YLWSEGG-H--DILDV--SHCGNEIFVLNLDRGLKVESVASRQRKLE 360 (726)
T ss_pred EEeecCC-C--ceeEE--eecCceEEEEecCCceeEEEeehhHHHHH
Confidence 4433221 1 34333 44466677777788888888776644443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=8e-05 Score=77.21 Aligned_cols=235 Identities=12% Similarity=0.097 Sum_probs=138.5
Q ss_pred EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC-CeEEE
Q 001159 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVS 942 (1135)
Q Consensus 864 i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s 942 (1135)
+++.+..+.+....+.+|...|..++|||....++..++.+..|.|.|+++...+..+..| ..+++.+|.-|. +++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 7777777777767777788899999999954458899999999999999999999998888 789999998876 46667
Q ss_pred EcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEE------EECCCCcEEEEEecCeEEEEec--CCceeeccCCC
Q 001159 943 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV------QFHNDQTHLLVVHESQISVYDS--KLECSRSWSPK 1014 (1135)
Q Consensus 943 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~ 1014 (1135)
|-..|.|.|+|+...+...........- .+|..+ ...+.|.+|+.+ --....|++ ...+.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 7789999999998766433222221111 223332 233344444442 223456666 22222221111
Q ss_pred CCCCCCEEEEEEeeCCCEEEEEeCC-C------eEE-EEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1015 DALPAPISSAIYSCDGLLVYAGFCD-G------AIG-VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1015 ~~h~~~i~~~~~s~d~~~l~~~~~d-g------~I~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
+..+...+++..+-.+.++..... - .|- --|-.+|..++..+...+. ..... ....-..+.+.+.++|
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~G--s~~~k-l~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFG--SKQTK-LSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccC--Ccccc-cccccceeccccccEE
Confidence 114455566666544554433322 1 111 1233456666554433210 00000 1111222333355555
Q ss_pred E-EEecCCcEEEEecCCCccccCC
Q 001159 1087 A-LGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1087 ~-sg~~dg~v~~W~~~~~~~~~~~ 1109 (1135)
+ +|++.+++.+||+.+.+....+
T Consensus 404 v~~gd~tn~lil~D~~s~evvQ~l 427 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFEVVQTL 427 (463)
T ss_pred EEecCCcceeEEeccchhheeeec
Confidence 5 5667789999999988854443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00038 Score=78.28 Aligned_cols=222 Identities=16% Similarity=0.198 Sum_probs=122.9
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
...+..+.++|+|++++++++|...|+.....+.... +.-..++|++ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4567899999999999999999999999655544332 2445688987 554 66677788999974333333334
Q ss_pred ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEE
Q 001159 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 1000 (1135)
Q Consensus 921 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v 1000 (1135)
++.. ..+..|-. |.+|...+.+ .|.+||+++++.+.. ..- .+|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~-----i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRR-----IDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEE-----ESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeE-----Eec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 4322 23444433 8888877655 799999999875433 221 2378999999999999988889999
Q ss_pred EecCCc------------eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccC
Q 001159 1001 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1068 (1135)
Q Consensus 1001 wd~~~~------------~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
++.+.. .+...... ...|.+.+|..| -++.|. .. +++-+--.....++.+..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT-~~-~lkYl~~Ge~~~i~~ld~---------- 233 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTT-SN-HLKYLVNGETGIIAHLDK---------- 233 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE--TT-EEEEEETTEEEEEEE-SS----------
T ss_pred EEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEc-CC-eEEEEEcCCcceEEEcCC----------
Confidence 988555 33322221 457888888877 444443 33 666633222223333332
Q ss_pred CCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1069 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+.+.+ .+.| ..+.|.....|+.|..+.+.-.+
T Consensus 234 -~~yll--gy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 234 -PLYLL--GYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ---EEE--EEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -ceEEE--EEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 23433 3444 34688888999999988776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5e-05 Score=86.65 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=133.5
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+..|+-...+..+|+.+.+......+ ..+.|+-+. .+++++.+|...|+|.+-|..+.+
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v-------------------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~ 208 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNV-------------------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE 208 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeec-------------------cCCceEEEE--ecCcEEEeecccceEEeecCCcCc
Confidence 45566667788889988776543211 222344444 378999999999999999999876
Q ss_pred ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC---------CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCcc
Q 001159 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD---------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 442 ~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1135)
.++ ++.+|.+.|.++.. .|. .|++||. |..|+|||++.-+.+..+.-+.++ .-+.|+|.-. .
T Consensus 209 ~ih---t~~aHs~siSDfDv--~GN--lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~-t 279 (1118)
T KOG1275|consen 209 TIH---TFDAHSGSISDFDV--QGN--LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT-T 279 (1118)
T ss_pred eee---eeeccccceeeeec--cCC--eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-c
Confidence 665 88999999987666 466 7888874 567899999988877777656555 5567888755 6
Q ss_pred EEEEEEcCCeEEEEe---CcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 513 FIFSTAIDGKIKAWL---YDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 513 ~l~s~s~dg~i~iwd---~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.++.++..|...+-| +.+... ...+...+..+.++.+|++++.++.+- .+|.|.+|.-.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd----~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD----HEGHVNLWADR 342 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec----ccCcEeeecCC
Confidence 788899999999998 443322 233444555699999999999999984 58899999743
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.9e-06 Score=51.38 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhc
Q 001159 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1135)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00033 Score=79.46 Aligned_cols=147 Identities=15% Similarity=0.232 Sum_probs=105.1
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEEcc--cceeeEEec
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVR--VDEVKTKLK 922 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~--~~~~~~~l~ 922 (1135)
..+|.++++++ ||+|.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-. ..+.-..+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 55899999999 8999999999888877765 4558999999993 256888999988 8777532 112112455
Q ss_pred CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 923 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
.-.|+|.++.|. |.++|-++.+| |+++|+.+++.+.. ++.+.....+..-...+.|.++.++ +.|-..+|+|..
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d~v~i~~ 231 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDRL-VIGWGDSVKICS 231 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCeE-EEecCCeEEEEE
Confidence 567899999994 88999999888 99999998875442 2222222222244567888887764 445555677777
Q ss_pred cC
Q 001159 1003 SK 1004 (1135)
Q Consensus 1003 ~~ 1004 (1135)
+.
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 63
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00071 Score=75.85 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=100.6
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.--++...+++++.|++.|.+.+|+-.. +........+ - .+.+....+|++..++
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~-~~~~~~~~vs~~e~lv 91 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--A-TGITCVRSVSSVEYLV 91 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--c-cceEEEEEecchhHhh
Confidence 5556777889999999999999986432 2222211111 1 5667778889999999
Q ss_pred EEEe-CCeEEEEECCCccE-----EEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce----eeEEecCcC
Q 001159 857 MSAS-GGKVSLFNMMTFKV-----MTMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTKLKGHQ 925 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~-----~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~ 925 (1135)
|.|+ .|.|.|+-+..... +... +.|...|+|++|++ ++..+++|...|.|..-.+++.. ..+.+-.-.
T Consensus 92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9998 68899998765321 1111 23778899999999 99999999999999998888721 122333345
Q ss_pred CCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 926 NRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+.|..|... ++.+|++...- ..+.+++.
T Consensus 171 s~IVQlD~~-q~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 171 SEIVQLDYL-QSYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred cceEEeecc-cceehHhhhhh--hheeecch
Confidence 677777765 44455544322 33444443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0044 Score=72.40 Aligned_cols=108 Identities=9% Similarity=0.110 Sum_probs=66.4
Q ss_pred CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC-----c-ee-EEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001159 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-----S-LG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-----~-v~-~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
..++.+.. ++.|+-+|..+|+.+..+...... . +. .+... ++..++.++.++.|+.+|.++|+.+...
T Consensus 62 g~vy~~~~----~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTS----HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCC----CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 34555432 678999999999988877543320 0 00 01111 2267888889999999999999999887
Q ss_pred eCCCCCCC---c-ceEEEcCCCCEEEEEE---------CCCcEEEEEcCCCchhh
Q 001159 627 DADGGLPA---S-PRLRFNKEGSLLAVTT---------SDNGIKILANSDGVRLL 668 (1135)
Q Consensus 627 ~~~~~~~~---v-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~ 668 (1135)
........ + .+..+. +..++.++ .++.+..+|..+++...
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 65432100 1 111222 24555554 35788999999985443
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0064 Score=70.03 Aligned_cols=251 Identities=13% Similarity=0.105 Sum_probs=140.5
Q ss_pred CeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.+....+||||++++++-+..| .+++.|+.+|+.+.. . + ....-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i--~~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------I--ENPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------E--EEEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------c--cccccceEEEeCCCCEE
Confidence 3446789999997666655555 599999999976532 0 1 11112349999999987
Q ss_pred EEEeCCC-----------eEEEEEeCCCCceeeeeEeecccCC--EEEEEEecCCCeEEEEEEcCC--CcEEEEEcCCC-
Q 001159 424 GVAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAG- 487 (1135)
Q Consensus 424 as~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--v~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~- 487 (1135)
+....+. .|+.|.+.++..-. ...+...... ...+..++|++.++|.+.+.. ..+.+-|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7765332 37788877654321 1234443332 678899999996433333322 45788888764
Q ss_pred ---eeeeeecCCCCCe-eEEEeeccCCccEEEEE---EcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 488 ---RKQYTFEGHEAPV-YSVCPHHKESIQFIFST---AIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 488 ---~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
.....+......+ ..+... ++ .+++.. ..++.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333333333333 333332 21 333333 2346677778877663 224444444322233334456666
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE--Ee--CCCeEEEEECCCCceE
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1135)
.... .++...|+++++..+.....+.....+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 3457789999998556666665555445666766666655443 22 3467888999887753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0012 Score=74.26 Aligned_cols=196 Identities=12% Similarity=0.120 Sum_probs=122.8
Q ss_pred eecccCCEEEEEEecCCCeEEEEEEcCC--CcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEE
Q 001159 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 449 l~~h~~~v~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iw 526 (1135)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-..-.|+|++. .++++...||...+|
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 3334456778899999996433333333 359999999887655443 333344557877663 566677778875555
Q ss_pred --eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEE
Q 001159 527 --LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 527 --d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
|+...... .+....+.-..-.|+|||++++..+ ++.+.-.|.+.|...+...+ +..... .-..-.|+|||++++
T Consensus 266 ~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~r-iT~~~~-~~~~p~~SpdG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTR-LTFSGG-GNSNPVWSPDGDKIV 341 (425)
T ss_pred EEcCCCCcce-ecccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeE-eeccCC-CCcCccCCCCCCEEE
Confidence 65555532 2443333344778999999999886 45556678888888766533 332222 112677999999998
Q ss_pred EEeC-CCe--EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 605 AAGD-EFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 605 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
..+. +|. |.+.|+.++..+..+.... ....-.|.+++..++..+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 8763 344 6667776665444443321 23456677888877766554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0059 Score=71.31 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=69.8
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC------cEE--EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCT--MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~i~--~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
..++.++.++.+...|..+++....+..... .+. .+++. ++..++.+.. ++.|+.+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 5677788889999999988887766544322 000 11111 2245665543 788999999999999887
Q ss_pred ecccCC----cee-EEEecCCCCEEEEEe---------CCCeEEEEECCCCceEEEEeC
Q 001159 584 SGFRKR----SLG-VVQFDTTRNRFLAAG---------DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 584 ~~~~~~----~v~-~i~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...... .+. ...+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 654320 011 12222 24455543 368899999999998887754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00031 Score=77.66 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=91.8
Q ss_pred cceeeEEeecCCCCeeEEEEecCCCeEEEEE----eccc----eEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVG----TNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 335 ~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g----~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
..-+.+.....+....++.||-...+.+.+- +.+| .-.+|++..++.... . + .--.
T Consensus 194 ~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-s--v-------------tsip 257 (545)
T PF11768_consen 194 GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-S--V-------------TSIP 257 (545)
T ss_pred CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-E--E-------------EEEe
Confidence 3445566666666778899987555444443 2344 345677665432111 0 0 0113
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....|.|++++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+|+|. ++++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeec
Confidence 6678999999999999999999999999999875322 223445678999999999 899999999999999865
Q ss_pred Ce
Q 001159 487 GR 488 (1135)
Q Consensus 487 ~~ 488 (1135)
..
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 43
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0046 Score=66.39 Aligned_cols=289 Identities=16% Similarity=0.105 Sum_probs=135.3
Q ss_pred EEEEEecCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
+.=+|++||+.|+.++. +|.-.+|-+ |+.+++..+..- + . ........++++.+.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTd-g--~-g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTD-G--P-GDNTFGGFLSPDDRA 94 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE----S--S--B-TTT-EE-TTSSE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECcc-C--C-CCCccceEEecCCCe
Confidence 34467889977766554 777777754 445554433211 1 0 111224667788888
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEe-cCCCcEEEEEeC----------------------CCcEEEEE
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGME----------------------DSSVQIYN 911 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~lasg~~----------------------dg~v~iwd 911 (1135)
++... +..|+-.|+.+++....+..+..-+....|. +.|+..++-.-. ...|.--|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 87665 5789999999988776676666666656664 325555443211 11345556
Q ss_pred cccceeeEEecCcCCCeEEEEEcCCCCeEEEEcC----CCc-EEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 912 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA----DAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 912 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~----D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+.+|+....+. -..-+.-+-|||....++.=+. |.. -+||-+.+.......+.+... ...+..=-|+||
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~D 248 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPD 248 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TT
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCC
Confidence 77776544444 3345677889997655555433 332 477866653322221111111 245677789999
Q ss_pred CcEEEE-Ee-----cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC----------------eEE
Q 001159 987 QTHLLV-VH-----ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG----------------AIG 1043 (1135)
Q Consensus 987 g~~l~~-~~-----d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg----------------~I~ 1043 (1135)
|..|.. +. +..|.-+|. +++...... ......+.-++||++++-=+.|. .|+
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 998776 32 334555666 443322111 12345666678999776444442 567
Q ss_pred EEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1044 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1044 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
++++..+....-...........+...+.--...|+|++...|.+....|...||-+
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 788887765432221110100000011112247899944444556777777666644
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.025 Score=66.22 Aligned_cols=111 Identities=9% Similarity=0.010 Sum_probs=66.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC-cEE----------EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~----------~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.+.. ++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 5677777788888888888877766543211 111 1122 1234555543 788999999999999
Q ss_pred EEeecccCCceeEEEecC--CCCEEEEEe------CCCeEEEEECCCCceEEEEeC
Q 001159 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..........-..+.-+| .+..++++. .+|.|+.+|.++|+.+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 876542110000111111 123455543 268999999999998877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0005 Score=76.05 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=84.3
Q ss_pred CCceEEEEeec-CCCEEEEE----e-CCe----EEEEECCCccEEEE--E-eCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 841 EESAACIALSK-NDSYVMSA----S-GGK----VSLFNMMTFKVMTM--F-MSPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 841 ~~~i~~l~~s~-dg~~la~~----~-dg~----i~vwd~~~~~~~~~--~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
+....++.||. +...+.+. + +|. -.+|++...+..+. . -.....|.|++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 55567888887 33344433 1 333 56777765543322 1 13667899999999 88999999999999
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCc
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
.+||...+.. .+....-.++.++|+|+|..+++|+.-|.+.+||+.-..
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999876633 233344567899999999999999999999999997644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=81.07 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=130.4
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceec
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
.+.++|++++. +++|-|+.+|.|++++... .. .....|+.. .-+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35678888864 7999999999999999763 33 444446554 5689999999999999999998877433
Q ss_pred eeeeecCCCCCCCCCCceEEEECCC-----CcEEEEEecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEE
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVY 1034 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~ 1034 (1135)
+.-.+ .++..++++|| .+++++|+...+.++.- -++.... ..+...++|.++.|- |.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEec--CcEEE
Confidence 22221 46789999999 56777765544888776 1222211 112227899999985 55777
Q ss_pred EEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1035 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1035 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
=++.+ .|+|||+.+++.+..+.+....+ -....+-.+.|.+ .+.|+.| ..-+|++..++.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 76555 59999999999999888664221 1123344677776 3567664 444788888873
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00078 Score=75.62 Aligned_cols=203 Identities=11% Similarity=0.063 Sum_probs=117.5
Q ss_pred cccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc---ceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
++..|...............+..-+|+|+++.+....-.. ..+.++++++++.....
T Consensus 175 l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-------------------- 234 (425)
T COG0823 175 LALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-------------------- 234 (425)
T ss_pred EEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------
Confidence 3344444333333334667888999999999755553333 35999999988754321
Q ss_pred CCCcceEEEEEcCCCCeEEEEeC-CCe--EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--EE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFS-KHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~-dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~--i~ 480 (1135)
.-.+.-...+|||||++||.+.. ||. |.++|+.++... .+..-.+.-+.-.|+|||+. ++++.+..|. |.
T Consensus 235 ~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~ 309 (425)
T COG0823 235 NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIY 309 (425)
T ss_pred ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceE
Confidence 12333456789999999888754 554 666677765522 23333333347789999996 3344455554 44
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCe--EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+.|++.+.. ..+....+.-..-.|+|+ |++++..+. +|. |.+.|+.+..... ............+.++++.++
T Consensus 310 ~~~~~g~~~-~riT~~~~~~~~p~~Spd--G~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 310 LYDLEGSQV-TRLTFSGGGNSNPVWSPD--GDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred EECCCCCce-eEeeccCCCCcCccCCCC--CCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEE
Confidence 555444433 333322222224456554 477766664 344 5666665555422 222333344567888888888
Q ss_pred EEe
Q 001159 558 SCG 560 (1135)
Q Consensus 558 ~~~ 560 (1135)
..+
T Consensus 386 ~~s 388 (425)
T COG0823 386 FSS 388 (425)
T ss_pred Eec
Confidence 665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.002 Score=72.56 Aligned_cols=222 Identities=11% Similarity=0.071 Sum_probs=119.5
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
........+.++|+|+.+++ +.||.-.|+..... +.. ..+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~k-----~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RNK-----AFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EEE-----EEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---ccc-----ccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 34455789999999999999 56677778874332 211 123455688998664 6667668899997433
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+.+....+.. ...+..+-. |..|...+ ++.|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3333233432 223444432 35555554 448999999998888877754 388999999999999886
Q ss_pred CCeEEEEECCCC---------e--EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEEeCCCCC
Q 001159 566 ESHLVEWNESEG---------A--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGL 632 (1135)
Q Consensus 566 ~~~i~~wd~~~~---------~--~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~ 632 (1135)
+..+.+++.... - ....+..... .|.+.+|..+ .++-.+.. .++.+ -.|+ .+..+. .
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~-~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld---~- 233 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISE-RIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD---K- 233 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S---SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S---S-
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEecc-eeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC---C-
Confidence 445777764432 0 2222222122 6888889866 44444443 67663 3333 233332 2
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++-+.+.+..+.+.....++.+..+.+...
T Consensus 234 -~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 -PLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -ceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 5677888887788999999999999987644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0049 Score=68.52 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=134.3
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccc------c------------CCceeecccccc------cchhhhh
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------H------------KPFKVWDISAAS------MPLQNAL 403 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~------~~~~~~~ 403 (1135)
.|+.+.|+++.. =||+|...|.|.||.....+.-. . ..-.+-|+.... .-.+..+
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 689999999976 47889999999999886543221 0 011122222211 1233445
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeec------ccCCEEEEEEec-----CC-CeEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH-----PN-KQLCIV 471 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~-----d~-~~~~l~ 471 (1135)
+....++|++++.| |=-++|+|..+|.+.|.|++....+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 5559999999999999999877655431 2222 234688898872 22 125788
Q ss_pred EEcCCCcEEEEEcCC---Ceee----eeecCCCCCeeEEEeeccCCc-------------------cEEEEEEcCCeEEE
Q 001159 472 TCGDDKMIKVWDVVA---GRKQ----YTFEGHEAPVYSVCPHHKESI-------------------QFIFSTAIDGKIKA 525 (1135)
Q Consensus 472 s~~~d~~i~iwd~~~---~~~~----~~~~~h~~~v~~i~~~~~~~~-------------------~~l~s~s~dg~i~i 525 (1135)
.|...|.+.+|.+.- +.-. .....+.++|..+..-....| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 999999999998751 2211 112246677777663211111 23455566888999
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEc-----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC---CceeEEEec
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~i~~s 597 (1135)
+..-+.+..............+.+- ..+..|++-. .+|.|+++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444222233334442 2344455544 388999999999888877766431 123345567
Q ss_pred CCCCEEEEEe
Q 001159 598 TTRNRFLAAG 607 (1135)
Q Consensus 598 ~~~~~l~~~~ 607 (1135)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776555443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.008 Score=66.89 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=139.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce----------------------------------------eeeeEe
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------------------------------------RQHLEI 449 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~l 449 (1135)
.|+++.|+++...||+|...|.|.||.....+.. .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4899999999999999999999999866432111 112223
Q ss_pred ecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee--ecC------CCCCeeEEEee---ccCCc---cEEE
Q 001159 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 515 (1135)
Q Consensus 450 ~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~------h~~~v~~i~~~---~~~~~---~~l~ 515 (1135)
+...++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 4457889999998666 899999999999999988877764 222 23467788776 23333 5788
Q ss_pred EEEcCCeEEEEeCcC-CCcee------EecCCCCcEEEEE-EcCC---------------------CCEEEEEecCCCCC
Q 001159 516 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1135)
.|...|.+.+|.+.- ..... ....+...|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999997752 11111 1113444444443 3221 11444544 5
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEec-----CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCcceEE
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 639 (1135)
..++++...+.+.........- ....+++- ..+..|++-..+|.|+++.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 6799999888776554442211 22333442 2456778888999999999999999988876421 12355678
Q ss_pred EcCCCCEEEEEECCCcEEEEEc
Q 001159 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++++|..++..+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88999877666544 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=52.86 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001159 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1135)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1135)
.+.++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0097 Score=61.19 Aligned_cols=191 Identities=9% Similarity=0.110 Sum_probs=110.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...+..++|+|+.+.|+|+....+.|...+.+ |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988899999999999888874 66554311 222 345778888888887777
Q ss_pred EeCCCeEEEEEeCCCCc---eeee--eEee---cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---Ceeeee--
Q 001159 426 AFSKHIVHLYTYNPTGE---LRQH--LEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~---~~~~--~~l~---~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~-- 492 (1135)
.-.++.+.+.++..... .... ..+. .++..+..++|.+.++. |+.+-......++.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76789999999854321 1111 1111 34567999999999885 44455555666666543 211111
Q ss_pred ------ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---------CcEEEEEEcCCCCEEE
Q 001159 493 ------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1135)
Q Consensus 493 ------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~ 557 (1135)
.......+.+++++|.. +++++.......|..+| ..++.+..+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 11234568899999874 47888888888999998 4455444333332 2577899999997666
Q ss_pred EE
Q 001159 558 SC 559 (1135)
Q Consensus 558 ~~ 559 (1135)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 64
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0053 Score=63.10 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=113.0
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 916 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~- 916 (1135)
...+..++|.|+.+.|++.. .+.|.-.+. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 45699999999876555555 578888886 47888876543 35688899986 67666655568999999984321
Q ss_pred -----eeEEec-----CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC---CceeceeeeecCCCCCCCCCCceEEEE
Q 001159 917 -----VKTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 917 -----~~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
....+. .+...+-+|+|.+.++.|+.+-...-..++.+.. .....................+..+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 112221 2445689999999988888887776677776654 111111111111101111145789999
Q ss_pred CCCCcEEEE-E-ecCeEEEEecCCceeeccCCCCCC------CCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 984 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 984 s~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
+|....|.+ + ....|.++|.+++.+..+....+. -..-..|+|.++|++.++ ++-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 998876666 5 467788888877766554333211 124678999999976655 466666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.015 Score=65.85 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=110.2
Q ss_pred EEeecCCCEEEEEeCC------------eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 847 IALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
++.+|.|..+|...|. .|+||+.. |+.+..+.=..+.|.++.|+. + ..|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCC
Confidence 4556666666666543 59999975 556666543448999999987 4 4566778999999999863
Q ss_pred ce------eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC---CCCCceE-EEEC
Q 001159 915 DE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS---PLVGETK-VQFH 984 (1135)
Q Consensus 915 ~~------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~-~~~s 984 (1135)
.. .+....-....+....+..+|-.+.+ .++.+.+-+--... ..........+... ....... ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcccc-chhhccccCCCcccccccccccccceEee
Confidence 32 11111112223333344445533333 34444333211111 01011111111000 0001111 3355
Q ss_pred CCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 985 NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 985 ~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
.+....+. ..++.+.+.+. .... .. ..+++..|++||+|++||.-..+|.+.|...+-.+.++++...
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 55554444 45555654443 2111 11 1468999999999999999999999999988777777766643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.2e-05 Score=59.85 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.5
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHHHHHHhccCH
Q 001159 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1135)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1135)
+..++++|+.|+|+.|+..+..........-+ .+.|.|++|+|+|++..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999888654322222 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.076 Score=59.76 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=174.1
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
......+.-......+.+.|+|..+.++-.....+.+-+......... ...-...-..+++
T Consensus 21 ~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v 81 (381)
T COG3391 21 NKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAV 81 (381)
T ss_pred cEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceee
Confidence 334444443346778889999965555544433444444331111000 0001134557889
Q ss_pred cCCCCeE-EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCCcEEEEEcCCCeeeeeec
Q 001159 417 GPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 417 spd~~~l-as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~ 494 (1135)
++++..+ +....++.|.+.|..+........ .+. ....++++++++.++++-.. .++++.+.|..+++.+.+..
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 9988854 444556889999977765544221 122 56789999999864444333 47899999999998888765
Q ss_pred CCCCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCcCCCcee-E---ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 495 GHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.-..+ ..+++.|++ ..+ ++-..++.|.+.|........ . ..........+.++++|.++++.-.. +.++.+
T Consensus 158 vG~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v 233 (381)
T COG3391 158 VGNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNV 233 (381)
T ss_pred cCCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceE
Confidence 44455 788887765 544 444588999999966554432 0 11222345678899999988766531 124689
Q ss_pred EEEECCCCeEEEE-eecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCC-CCCcceEEEcC
Q 001159 570 VEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNK 642 (1135)
Q Consensus 570 ~~wd~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~ 642 (1135)
...|..++..... ...... ....+..+|+|..+++.. ..+.+.+.|..+............ ...+..+++.+
T Consensus 234 ~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999998887765 333332 345688999999998874 458899999998887776653322 11234444444
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.019 Score=64.50 Aligned_cols=208 Identities=15% Similarity=0.161 Sum_probs=142.1
Q ss_pred ceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEccccee
Q 001159 843 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEV 917 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~ 917 (1135)
....+++++++..+.... ++.|.+.|..+.+......--. ....++++| +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345788899888666555 6899999988877776664222 667899999 6655555544 68999999999988
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEE-cCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe--
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-- 994 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-- 994 (1135)
+.....-..+ ..++++|+|+.+..+ ..++.|.+.|.+...... .. .............++++|+|.++.+..
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEecc
Confidence 8775433334 899999999955544 578999999977755321 00 000011113457899999999877742
Q ss_pred c--CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEECCCceeeeeeCCc
Q 001159 995 E--SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 995 d--~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
+ +.+.+.|. .+.....-.... -. ....+.++|+|+++.+... .+.+.+-|..+......+...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 2 57888888 444333312211 02 3456899999999887744 488999999998877765543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.027 Score=60.63 Aligned_cols=236 Identities=14% Similarity=0.122 Sum_probs=134.6
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCC
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 862 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg 862 (1135)
..++.|++|+.+| +.++++.. ......+ . + ...|..+...++-+.+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~-------------------~~~~~~i---~----~-~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD-------------------PSKPTRI---L----K-LSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC-------------------CccceeE---e----e-cceEEEEEEecccCEEEEEcCC
Confidence 4567789998888 77776510 0000000 0 2 4459999999999988888899
Q ss_pred eEEEEECCCccEEEEE--------------eCCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEEcccc-----eeeEEe
Q 001159 863 KVSLFNMMTFKVMTMF--------------MSPPPAATFLA--FHPQDNNIIAIGMEDSSVQIYNVRVD-----EVKTKL 921 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~--------------~~h~~~v~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~-----~~~~~l 921 (1135)
.+.++++......... ......+..++ -...+...|+++. .+.|.+|..... +..+++
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence 9999999865443311 11223444444 1121445555544 458988887653 345555
Q ss_pred cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC----CCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 922 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA----GRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 922 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
.- .+.+.+++|. ++.++.+..++ ..+.|+.++............ .......++ .+.--+++.+|++ .+..
T Consensus 136 ~l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Ll~-~~~~ 209 (275)
T PF00780_consen 136 SL-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL-GIFQLSDNEFLLC-YDNI 209 (275)
T ss_pred Ec-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCce-EEEEeCCceEEEE-ecce
Confidence 53 4678999998 55676666555 888999976532211111100 000000122 2323344555554 3444
Q ss_pred EEEEecCCceee-ccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 998 ISVYDSKLECSR-SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 998 v~vwd~~~~~~~-~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
-...|..|+..+ ..... .....++++. ..||++.+. +.|.||++.+++++..+...
T Consensus 210 g~fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 210 GVFVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 444555554333 11111 2345566663 347776544 56999999999999887744
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.25 Score=58.00 Aligned_cols=192 Identities=12% Similarity=0.083 Sum_probs=118.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCC-CCeeE----------EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYS----------VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~----------i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.++.++.++.|+-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+...|..+++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778889999999999887764311 11111 111 1246778889999999999998887655
Q ss_pred cCCCC----cEEEEEEcCCCCEEEEEecC--CCCCCeEEEEECCCCeEEEEeecccCC----------------------
Q 001159 538 DAPGN----WCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKR---------------------- 589 (1135)
Q Consensus 538 ~~~~~----~i~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~---------------------- 589 (1135)
..... .+.+.-.--++ .++++... ...++.|..+|.++|+.+..+..-...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 43211 11111011134 44444321 112678999999999988775432110
Q ss_pred --------ce-eEEEecCCCCEEEEEeCC-----C-----------eEEEEECCCCceEEEEeCCCCC-------CCcce
Q 001159 590 --------SL-GVVQFDTTRNRFLAAGDE-----F-----------QIKFWDMDNMNMLTTVDADGGL-------PASPR 637 (1135)
Q Consensus 590 --------~v-~~i~~s~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 637 (1135)
.+ ..+++++..+.++.+... + .|.-.|+++|+....++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 11 135677777777765521 2 5777899999988877654331 11112
Q ss_pred EEEcCCCC---EEEEEECCCcEEEEEcCCCc
Q 001159 638 LRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 638 ~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 665 (1135)
+.+..+|+ .++.++.+|.+.+.|-.+++
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 23334666 78899999999999999993
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.016 Score=61.91 Aligned_cols=217 Identities=16% Similarity=0.138 Sum_probs=124.6
Q ss_pred EeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec---
Q 001159 848 ALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--- 922 (1135)
Q Consensus 848 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~--- 922 (1135)
.|.++...|.-.+ .+.|.-|+..+++. ..+..+ +.+.++..-. .+..|+++. .-+++++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 5667777666665 68899999886644 334323 3344444433 344454442 337777777665533322
Q ss_pred -Cc-CCCeEEEEEcCCCCeEEEEcC-----C----CcEEEEeCC-CCceeceeeeecCCCCCCCCCCceEEEECCCCcEE
Q 001159 923 -GH-QNRITGLAFSPTLNALVSSGA-----D----AQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 990 (1135)
Q Consensus 923 -~h-~~~i~~l~~s~d~~~l~s~~~-----D----~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 990 (1135)
+. ....+.+...|+|.+.++... . ..-.+|.++ .+... ....++. ..-+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-----~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-----RLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE-----EeecCcE---EecCceEECCCCCEE
Confidence 11 234667888999988876554 1 112455554 22211 1111111 234689999999887
Q ss_pred EEE--ecCeEEEEecC---Cceeec--cCCCCCCCCCEEEEEEeeCCCEEEEEeCCC-eEEEEECCCceeeeeeCCceec
Q 001159 991 LVV--HESQISVYDSK---LECSRS--WSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYI 1062 (1135)
Q Consensus 991 ~~~--~d~~v~vwd~~---~~~~~~--~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~ 1062 (1135)
..+ ..+.|.-|++. +..-.. +.......+..-.++...+|.+-+++-.+| .|.+|+.+ |+++..+....
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-- 254 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-- 254 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--
Confidence 774 45777777663 111111 111111245566788888998776555554 89999999 99998877553
Q ss_pred cccccCCCCccEEEEecCCCCCEEEE
Q 001159 1063 PTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..+.+++|-..+.+.|..
T Consensus 255 --------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 255 --------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred --------CCCccceEeCCCcCEEEE
Confidence 334466775444444443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=2.9e-05 Score=85.17 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=127.7
Q ss_pred CeeEEEEecCCC-eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEEE
Q 001159 348 NVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 348 ~V~~v~~sp~g~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las 425 (1135)
.+.|++++-+.+ -++++|..+|.|.+-.+.....- ......+|....++++|++ |...||.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAa 120 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAA 120 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHh
Confidence 455666544332 58999999999999887643221 0112456888999999999 6778888
Q ss_pred Ee----CCCeEEEEEeCCCCc-eeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCCCC
Q 001159 426 AF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA 498 (1135)
Q Consensus 426 ~~----~dg~i~iwd~~~~~~-~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~ 498 (1135)
|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|...+.++++|++... ....+ .+.
T Consensus 121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk 196 (783)
T KOG1008|consen 121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NTK 196 (783)
T ss_pred hhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hhh
Confidence 73 366799999988611 111112222 334566899997777 78899989999999987322 11222 233
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEe-CcCCCceeE-ecCCC----CcEEEEEEcCCCCE-EEEEecCCCCCCeEEE
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVD-YDAPG----NWCTMMAYSADGTR-LFSCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~~-~~~~~----~~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~ 571 (1135)
.+..+.+.|-. ++++++-. ||.|.+|| ...-+.... +.... ..+..++|.|...- +++... ..++|++
T Consensus 197 ~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrl 271 (783)
T KOG1008|consen 197 YVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRL 271 (783)
T ss_pred hcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEE
Confidence 45555665532 25666655 99999999 443333222 21111 25889999996553 344432 3678999
Q ss_pred EECC
Q 001159 572 WNES 575 (1135)
Q Consensus 572 wd~~ 575 (1135)
+|+.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 9875
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0043 Score=72.86 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=108.7
Q ss_pred CceEEEEeecCCCEEEEEe-------CC--eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC--------
Q 001159 842 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 904 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-------- 904 (1135)
..+.+.++||||+.+|... |+ .|.+++.. +.. ..+. .....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt-~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL-EGHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee-cCCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4677899999999888664 32 46666653 333 3332 122488899999 77777766432
Q ss_pred ----CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEE---EeCCCCceeceeeeecCCCCCCCCCC
Q 001159 905 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 977 (1135)
Q Consensus 905 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1135)
+.+.+.+++.++... ...+.|..+.|||||++++... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2345799999999999888766 467776 443444311111111111111 23
Q ss_pred ceEEEECCCCcEEEEEecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEE
Q 001159 978 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1043 (1135)
Q Consensus 978 v~~~~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~ 1043 (1135)
+..+.|..++.+++...++...+|.+ .+.....+ .......++.+++-+++ -++.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 57899999999765554444445655 54443332 22223567778887763 355556666433
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=7.3e-05 Score=82.13 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=108.2
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce--eEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEEC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
..+.|+++....+...++.|..+|.|-+-.++..... .....+....++++|++ |.+.|++|-...+.+..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3455666555555467888888999998877654432 23445566889999988 55677776544456778999999
Q ss_pred CCC--eE--EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcC-CCCEEE
Q 001159 575 SEG--AI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1135)
Q Consensus 575 ~~~--~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 648 (1135)
.++ .+ -..|.+.......+++|..+.+.+.+|.....+.++|++.. .....+. ...+..+.++| .+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence 876 22 12233322225668899988899999988889999998832 2222222 11467788888 777887
Q ss_pred EEECCCcEEEEEc
Q 001159 649 VTTSDNGIKILAN 661 (1135)
Q Consensus 649 ~~~~dg~i~iwd~ 661 (1135)
+-. ||.|.+||.
T Consensus 213 s~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNS-DGDIAIWDT 224 (783)
T ss_pred ccc-cCceeeccc
Confidence 665 889999994
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.057 Score=54.30 Aligned_cols=234 Identities=15% Similarity=0.084 Sum_probs=137.6
Q ss_pred EEEeecCC-CEEEEEe-CCe-EEEEECCCccEEEEEeCCCCC--eEEEEEecCCCcEEEEEeCC-----CcEEEEEcccc
Q 001159 846 CIALSKND-SYVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 915 (1135)
Q Consensus 846 ~l~~s~dg-~~la~~~-dg~-i~vwd~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~ 915 (1135)
.++|+|.- +-++.+. -|+ ..++|..+.+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 57888854 4455665 455 778999888776665433222 22346999 89988765433 78999998854
Q ss_pred -eeeEEecCcCCCeEEEEEcCCCCeEEEEcC------C------------CcEEEEeCCCCceeceeeeecCCCCCCCCC
Q 001159 916 -EVKTKLKGHQNRITGLAFSPTLNALVSSGA------D------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 976 (1135)
Q Consensus 916 -~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+.+.++..|.-..-.+.+.+||+.|+.+.. | -++.+.|..+++.+.+..+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 566778888888889999999999987743 1 1244445445554433332211111 4
Q ss_pred CceEEEECCCCcEEEEEe------cCeEEEEec-CCceeeccCCCC----CCCCCEEEEEEeeCCCEEEEEeCC-CeEEE
Q 001159 977 GETKVQFHNDQTHLLVVH------ESQISVYDS-KLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGFCD-GAIGV 1044 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~~------d~~v~vwd~-~~~~~~~~~~~~----~h~~~i~~~~~s~d~~~l~~~~~d-g~I~v 1044 (1135)
.+..++..+||..++.+. |----|=-. .++.+..+.... ....-|-+++..-+..+++..+.. +...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 678888888888777641 111111111 222222211110 012346778887666666655554 45788
Q ss_pred EECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEe
Q 001159 1045 FDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1045 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~ 1099 (1135)
||..+|..+....... ..-++.. .+-+.+ .+.+|.+.++.
T Consensus 307 ~da~tG~vv~~a~l~d----------aaGva~~----~~gf~v-ssg~G~~~~~s 346 (366)
T COG3490 307 WDAATGAVVSEAALPD----------AAGVAAA----KGGFAV-SSGQGRIIFYS 346 (366)
T ss_pred EEcCCCcEEecccccc----------cccceec----cCceEE-ecCCceEEecc
Confidence 9999999886544321 1111221 233444 46678888774
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.13 Score=59.19 Aligned_cols=244 Identities=12% Similarity=0.130 Sum_probs=128.6
Q ss_pred cceEEEEEcCCCCeEEEE-eCCC----eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC--------
Q 001159 409 ISVNRCVWGPDGLMLGVA-FSKH----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-------- 475 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~-~~dg----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-------- 475 (1135)
..+..+++||||+++|.+ +..| .++++|+.+++.+.. .+..- ....+.|.+|++. ++.+...
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999986 3333 599999999865432 12111 1223999999985 3444422
Q ss_pred --CCcEEEEEcCCCeee--eeecCCCCC--eeEEEeeccCCccEEEEEEc-C---CeEEEEeCcCC----CceeEecCCC
Q 001159 476 --DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI-D---GKIKAWLYDYL----GSRVDYDAPG 541 (1135)
Q Consensus 476 --d~~i~iwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~~~l~s~s~-d---g~i~iwd~~~~----~~~~~~~~~~ 541 (1135)
...|+.|.+.++... ..+...... ...+..+. ++++++..+. . ..+.+.|+... .....+....
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 234788888776432 344444443 34555554 4577665432 2 34677777664 2233333333
Q ss_pred -CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccC-CceeEEEecCCCCEEEEE-eCC--CeEE
Q 001159 542 -NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK-RSLGVVQFDTTRNRFLAA-GDE--FQIK 613 (1135)
Q Consensus 542 -~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~i~~s~~~~~l~~~-~~d--g~i~ 613 (1135)
.....+... +..++..+..+..++.|...++..... ...+..+.. ..+..+.. .+++|+.. ..+ ..|+
T Consensus 277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 333333333 443333332334567888888887652 223433333 13444444 35555553 333 3688
Q ss_pred EEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE--EC--CCcEEEEEcCCC
Q 001159 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT--TS--DNGIKILANSDG 664 (1135)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~--dg~i~iwd~~~~ 664 (1135)
++++..+.....+..... ..|..+...+++..+... +. -+++..||+.++
T Consensus 353 v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 899984555555554432 245555555655544332 22 357888888877
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0015 Score=68.60 Aligned_cols=111 Identities=9% Similarity=0.136 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHH
Q 001159 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~ 75 (1135)
+.|..+|..++...|+...+..|-+|+|...+ +.++.+++..|+-.-|++.+......-... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 44689999999999999999999999998752 678888999999999988887753222222 2248899
Q ss_pred HHHHHHHHHHhccCHH--HHHHHHHhccccccccCHHHHHHHHH
Q 001159 76 IRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQ 117 (1135)
Q Consensus 76 i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1135)
+..+.|++++..|... +|+...|..++|+...+....+.+-.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 9999999999999887 99999999999997766666666633
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.1 Score=56.14 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=129.1
Q ss_pred CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001159 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 ~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd 436 (1135)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 445 467788888 89999832221110 11333499999999887776664 49999999
Q ss_pred eCCCCceeeeeE-----------eecccCCEEEEE--EecCCCeEEEEEEcCCCcEEEEEcCCC-----eeeeeecCCCC
Q 001159 437 YNPTGELRQHLE-----------IDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 498 (1135)
Q Consensus 437 ~~~~~~~~~~~~-----------l~~h~~~v~~v~--~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~h~~ 498 (1135)
+..-........ .......+...+ =...+.. .|+.+- .+.|.+|..... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876433221100 011223344444 1123332 444443 558888887653 3445554 457
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC------------CcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+.+++|.. +.++.|.. +...+.|+.++.....+.... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788898873 46666664 447788888665544332211 12333333 445666553 2
Q ss_pred CeEEEEECCCCeEEE--EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 567 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
. +-++=-..|+..+ .+.-.. ....+++. ..++++.+. +.|.||++.+++.++++...
T Consensus 208 ~-~g~fv~~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 N-IGVFVNKNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-eEEEEcCCCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 2 3333333454443 222211 34455553 457777665 45999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.036 Score=61.12 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=104.2
Q ss_pred eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----CCeEEEEeC---------C-CeEEEE
Q 001159 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS---------K-HIVHLY 435 (1135)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~~~las~~~---------d-g~i~iw 435 (1135)
.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..+|++|+. . |.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 5778887777655432221 0012223334444443 468888753 2 899999
Q ss_pred EeCCC----CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeec-CCCCCeeEEEeeccC
Q 001159 436 TYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFE-GHEAPVYSVCPHHKE 509 (1135)
Q Consensus 436 d~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~i~~~~~~ 509 (1135)
++... ..++.... ....++|++++-. .+ .|+.+. .+.|.+|++...+ ....-. .....+.++... +
T Consensus 68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99984 23433323 2457889999877 33 333333 4789999998877 332221 122356666543 3
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCc-ee--EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~-~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
++++.|...+.+.++.++.... .. .......+++++.|-++++.++++ |.++.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~----D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG----DKDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE----ETTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE----cCCCeEEEEEEC
Confidence 6899999999988886654333 22 223345578999998777766655 347788877664
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.029 Score=61.82 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=105.1
Q ss_pred CeEEEEECCCccEEEEEeCC-CCCeEEEEE---ecC---CCcEEEEEeC----------CCcEEEEEcccc----eeeEE
Q 001159 862 GKVSLFNMMTFKVMTMFMSP-PPAATFLAF---HPQ---DNNIIAIGME----------DSSVQIYNVRVD----EVKTK 920 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~---sp~---~~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 920 (1135)
..|++.|..+.+.+.++.-. ...+.+++. ..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46899999888887776433 334555543 321 1578888863 289999999984 12222
Q ss_pred e--cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCc-eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecC
Q 001159 921 L--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE-KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HES 996 (1135)
Q Consensus 921 l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~ 996 (1135)
+ ....++|++|+-- .+.++++. .+.|.+|++...+ ......... +...+.....+.+++++ ..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~---------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDS---------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-B---------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecc---------eEEEEEEeccccEEEEEEccc
Confidence 1 2357889999876 44444443 4779999999877 222212111 12333333445577776 356
Q ss_pred eEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 997 QISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 997 ~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
.+.++.. ....+..+.. +.....++++.|-+|+..+++++.+|.+.++....
T Consensus 150 sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 6777654 3443333222 22255688999987778999999999999999873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.074 Score=53.52 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=68.8
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc-eeEEEecCCCCEEEEEeC-----CCeEEEEECC
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGD-----EFQIKFWDMD 618 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~~~~~-----dg~i~iwd~~ 618 (1135)
..++++|....-+.... .......++|...++.+.++....+.. .-.-.||+||.+|++.-. -|.|-|||.+
T Consensus 71 Hgi~~~p~~~ravafAR--rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFAR--RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEe--cCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 35678886655443322 113346788988887776665444322 223569999999998653 3789999988
Q ss_pred CC-ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001159 619 NM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 619 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 658 (1135)
.+ ..+..+..++- ....+.+.+||+.++.+. |-|..
T Consensus 149 ~~fqrvgE~~t~Gi--GpHev~lm~DGrtlvvan--GGIet 185 (366)
T COG3490 149 EGFQRVGEFSTHGI--GPHEVTLMADGRTLVVAN--GGIET 185 (366)
T ss_pred cccceecccccCCc--CcceeEEecCCcEEEEeC--Cceec
Confidence 53 34455554432 346789999999988763 34443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.032 Score=66.57 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=98.9
Q ss_pred CCcEEEEE-eCCCcEEEEEcccceeeEEecCcCCC-eEEEEEcC-----CCCeEEEEcCCCcEEEEeCCCCceeceeeee
Q 001159 894 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSP-----TLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 966 (1135)
Q Consensus 894 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~-----d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 966 (1135)
+.++|..- .....|+-.|++.|+.+..+..|... |..++-.. +....+.|-.+..+..||..-... ..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence 44555443 35678999999999999999987754 55554321 123345566677899999885431 1111
Q ss_pred cCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 967 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
...........-++++-+.+|..++.+.+|.||+||-.+....+..+ +.+.+|..|..+.||++|++. .+..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILAT-CKTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEe-ecceEEEEE
Confidence 10001111245677888888877666899999999985544444433 337899999999999998855 567888888
Q ss_pred CC
Q 001159 1047 AE 1048 (1135)
Q Consensus 1047 ~~ 1048 (1135)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.051 Score=64.05 Aligned_cols=162 Identities=14% Similarity=0.016 Sum_probs=87.6
Q ss_pred CCCeEEEEEecCCCcEEEEEe------CCC--cEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC-CcEEEE
Q 001159 882 PPAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCMW 952 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~iw 952 (1135)
...+...++|| +|+.+|... .|. .|.+++. .+.......+ ...+.-.|+|||+.|++.+.. ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 4555554 2333222333 247889999999888877533 222222
Q ss_pred eCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec---CCceeeccC---CCCCCCCCEEEEEE
Q 001159 953 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRSWS---PKDALPAPISSAIY 1026 (1135)
Q Consensus 953 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~---~~~~~~~~~---~~~~h~~~i~~~~~ 1026 (1135)
+-.....+....+............|..+.|||||+.++...+++|.|--+ .+.....-. ....-...+.++.|
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 221111111000000000001124689999999999999966788877433 222211100 01111334688999
Q ss_pred eeCCCEEEEEeCCCeEEEEECC
Q 001159 1027 SCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1027 s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
..++.++ ++..++...+|.++
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEe
Confidence 9999965 55555555555543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.18 E-value=1 Score=54.85 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=114.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCC--------eeEEEee--------------ccCCccEEEEEEcCCeEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPH--------------HKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~--------------~~~~~~~l~s~s~dg~i~iw 526 (1135)
.++.++.++.|.-.|..+|+.+.++...... ...+++. |...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4566666777777777777777665432110 1112221 11123578889999999999
Q ss_pred eCcCCCceeEecCCCC------------cEEEEEEcC--CCCEEEEEecCCC------CCCeEEEEECCCCeEEEEeecc
Q 001159 527 LYDYLGSRVDYDAPGN------------WCTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~------------~i~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.++++....+..... ....+.-+| .+..+++++...+ ..+.|+-+|.++|+++..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432111 000111112 1345555543222 2688999999999999887531
Q ss_pred c---------C-------Cce-eEEEecCCCCEEEEEe------------------CCCeEEEEECCCCceEEEEeCCCC
Q 001159 587 R---------K-------RSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 587 ~---------~-------~~v-~~i~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
. + ..+ ...+++++...++.+. ..+.|.-.|+++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 011 2345566555555422 134577788889988877764222
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEECCCcEEEEEcCCCch
Q 001159 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 632 ~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~ 666 (1135)
. ....-+.+.. +|+ .++.++.+|.+.++|.++++.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 0 0111122333 553 788999999999999999943
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.2 Score=51.24 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=126.4
Q ss_pred CCceEEEEeecCCCEEEEEe-CC--eEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001159 841 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
......+.|..+|.++-+.+ .| .|+.+|+.+++......-.. ----.++... +++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccce
Confidence 45566788888888888777 44 69999999999876654332 2234455553 4566666678999999999999
Q ss_pred eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 917 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 917 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
.+.++.- .+.=++|+ .|++.|+.......+.++|.++.+....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~---------------------------------- 164 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT---------------------------------- 164 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE----------------------------------
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE----------------------------------
Confidence 9988864 45668888 4677777776677799999887553221
Q ss_pred eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccC-----CCC
Q 001159 997 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS-----NTA 1071 (1135)
Q Consensus 997 ~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~ 1071 (1135)
|.|.+ .+.. -..+.-+-+- +|...|=.-....|..-|..+|+....+..+...+..... ...
T Consensus 165 -i~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~d 231 (264)
T PF05096_consen 165 -IQVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDD 231 (264)
T ss_dssp -EE-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS
T ss_pred -EEEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCC
Confidence 11111 1111 1123445553 6776776666778899999999999888766554432111 112
Q ss_pred ccEEEEecCCCCCEEEEEecCCcEE
Q 001159 1072 HPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1072 ~~~~~~~~~~~~~~l~sg~~dg~v~ 1096 (1135)
-.=.++|.|..+++++||-.=-.++
T Consensus 232 VLNGIAyd~~~~~l~vTGK~Wp~ly 256 (264)
T PF05096_consen 232 VLNGIAYDPETDRLFVTGKLWPKLY 256 (264)
T ss_dssp -EEEEEEETTTTEEEEEETT-SEEE
T ss_pred eeEeEeEeCCCCEEEEEeCCCCceE
Confidence 2338999998888888886544443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.31 Score=55.28 Aligned_cols=176 Identities=13% Similarity=-0.031 Sum_probs=89.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCcee---eeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+.|.++.|+.+.+ |++...||.+++||+....... ......-....+.+..+..+|- .++++ ++.+.+-.-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7899999998654 5566799999999987433000 0000111112232333433442 33333 3434433211
Q ss_pred CCe-eeeee---cC-----CCC-CeeE-EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 486 AGR-KQYTF---EG-----HEA-PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~-~~~~~---~~-----h~~-~v~~-i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
... ..+.+ .+ |.. .... ..+. .+....+....++.+.+.+-..... ....+++..+++||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~--~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS--SDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEee--cCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCC
Confidence 111 11111 11 000 0111 1122 2224455555556666443222111 11245899999999999
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
+++.... +|.+.+.+..-.+....+..........+.|..+
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 9988763 6788888876666666666553334556666644
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.11 Score=55.55 Aligned_cols=224 Identities=15% Similarity=0.108 Sum_probs=133.4
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
+..|.|++..++.+--..+.|.-|+..+++... + .+.+.+.++..-.++..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEc-cc
Confidence 345778887777777778899999988765331 1 1233345555444444555442 22
Q ss_pred eEEEEEeCCCCceeeeeEee-cc-cCCEEEEEEecCCCeEEEEEEcCC----------CcEEEEEcC-CCeeeeeecCCC
Q 001159 431 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGDD----------KMIKVWDVV-AGRKQYTFEGHE 497 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~-~h-~~~v~~v~~s~d~~~~~l~s~~~d----------~~i~iwd~~-~~~~~~~~~~h~ 497 (1135)
+.+++.+++.......... +. ...-+.+...|+|. +.+ +... ..-.+|-+. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 6677776554422221111 11 13456788889987 333 3222 111345444 566666666666
Q ss_pred CCeeEEEeeccCCccEEEEE-EcCCeEEEEeCcCC-----Cc--eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 498 APVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYL-----GS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~-s~dg~i~iwd~~~~-----~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
..-+.++|+|++ +.++.+ +..+.|.-|++... .. ...+....+..-.++...+|.+-+++.. +.+.|
T Consensus 163 ~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v 237 (307)
T COG3386 163 TIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRV 237 (307)
T ss_pred EecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceE
Confidence 677899999976 455554 45588888877631 11 1222333455566778888887754432 12479
Q ss_pred EEEECCCCeEEEEeecccCCceeEEEec-CCCCEEEEEe
Q 001159 570 VEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1135)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~~~~ 607 (1135)
..|+.. |+++..+..... .+++++|- ++.+.|+..+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 999988 999999888754 67777775 3445555443
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0013 Score=60.81 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+++.+.|||++..|...+|..|+++.-..+...+.+++++|+.+....++.+++....+++ .+.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 4544 9999999999999999999999999998877776678899999999999998888887766654 3444
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 4666666665
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=70.89 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=77.9
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeE-EEEEcCCCCeEEEEcCCCcEEEEeCCCCceec
Q 001159 883 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
..|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4578899999 88899999999999999988 778889987888787 99999999999999999999999999988655
Q ss_pred eeeeecCCCCCCCCCCceEEEEC
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
..... ....|..+.|+
T Consensus 99 ~~~~s-------~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFS-------VETDISKGIWD 114 (665)
T ss_pred ccccc-------cccchheeecc
Confidence 43111 11567777777
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.19 Score=53.51 Aligned_cols=160 Identities=11% Similarity=0.094 Sum_probs=83.6
Q ss_pred eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe-CCCC
Q 001159 879 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKW 957 (1135)
Q Consensus 879 ~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd-~~~~ 957 (1135)
....+.+..+..++ ||++++++..-....-||--...-...-+.-..+|.+|.|+||+.+.+.+ ..|.|++=+ ....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788899998 89999877655555567643221111222346789999999998876655 788888776 2222
Q ss_pred ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe
Q 001159 958 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1037 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~ 1037 (1135)
+.-. ............+..++|.+++...+++..+.+.+=.=.++.-........-......+.|..+.+-++.|
T Consensus 219 ~~w~----~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 219 ETWS----EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EEE-------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred cccc----cccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 2111 10011111114578999999999999988886654322444333332222225678899998877766765
Q ss_pred CCCeEEEE
Q 001159 1038 CDGAIGVF 1045 (1135)
Q Consensus 1038 ~dg~I~vw 1045 (1135)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78887655
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.24 Score=55.10 Aligned_cols=84 Identities=12% Similarity=0.202 Sum_probs=61.5
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC-----------------CEE-
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRF- 603 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~-----------------~~l- 603 (1135)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 357889999998877764 4589999999999999999999877444333322221 122
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 604 LAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+-+-.-|.|.||.++.|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 23667899999999999888777643
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=1.2 Score=54.35 Aligned_cols=244 Identities=9% Similarity=0.029 Sum_probs=122.7
Q ss_pred cceEEEEEcCCCCeEEEEeC-----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC-----CCc
Q 001159 409 ISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKM 478 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d~~ 478 (1135)
-.+..+.|||||++||.+.. ...|++.|+.++..+.. .+.+ . -..++|++|++. ++++... ...
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 45778899999999988743 23588999988753321 1211 1 146999999986 3333322 247
Q ss_pred EEEEEcCCC--eeeeeecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcC--CCceeEecCCCCcEEEEEEcC
Q 001159 479 IKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 479 i~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 551 (1135)
|+.+++.++ +....+........-..+. ..++.+++..+. ++.+.+|+... ......+.........+. ..
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 888888887 3333444333333322222 324455544433 35688888533 222222322223223322 22
Q ss_pred CCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecc-cCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeC
Q 001159 552 DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDA 628 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~ 628 (1135)
+..++..+..+.....|...++. .++. ..+-.+ .+..+..+.+.. +..+++...+|.-+++-+.. +..+..+..
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 34444333222234455555655 2322 233333 333677777773 34455555677655554432 233444432
Q ss_pred CCCCCCcceEEEc--CCCC-EEEEEEC---CCcEEEEEcCCC
Q 001159 629 DGGLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1135)
Q Consensus 629 ~~~~~~v~~~~~~--~~~~-~l~~~~~---dg~i~iwd~~~~ 664 (1135)
... ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 112223344 3333 4443333 467778887665
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0027 Score=43.63 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.9
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd 953 (1135)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=2 Score=52.55 Aligned_cols=243 Identities=10% Similarity=0.045 Sum_probs=122.7
Q ss_pred CeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.+..+.+||||++++.+.+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 5778899999996555544444 688899988764321 0111 11469999999987
Q ss_pred EEEeCC------CeEEEEEeCCCCc-eeeeeEeecccCCEE-EEEEecCCCeEEEEEEc-CCCcEEEEEcC--CCeeeee
Q 001159 424 GVAFSK------HIVHLYTYNPTGE-LRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCG-DDKMIKVWDVV--AGRKQYT 492 (1135)
Q Consensus 424 as~~~d------g~i~iwd~~~~~~-~~~~~~l~~h~~~v~-~v~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~ 492 (1135)
+....+ ..|+.+++.++.. -.. .+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 776542 3678888887721 111 2332223333 33334478753332222 34678888843 3432222
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+..-.+....+. +.. + .+.+.... ...|...++........+..+ ...+..+.++ ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~~-~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQ-H-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eCC-C-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 221122222222 222 2 23332222 223444455422222233333 3367777776 445554432 23455
Q ss_pred eEEEEECCCCeEEEEee-cccCCceeEEEec--CCCC-EEEEEe---CCCeEEEEECCCCc
Q 001159 568 HLVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~-~~~~~~v~~i~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1135)
.+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 67777765443 33333 2111 23333344 3444 343332 45788889988764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0058 Score=67.92 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=78.4
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeE-EEEEecCCCcEEEEEeCCCcEEEEEcccceee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 918 (1135)
...+.-+.|+|.-.++|++. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++-|++++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 56788899999999999998 8999999988 888888887888887 999999 8999999999999999999998876
Q ss_pred EEe-cCcCCCeEEEEEc
Q 001159 919 TKL-KGHQNRITGLAFS 934 (1135)
Q Consensus 919 ~~l-~~h~~~i~~l~~s 934 (1135)
..+ ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 652 2244567777775
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.26 Score=51.72 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=94.2
Q ss_pred CceEEEEeecCCCEEEEEe--CC--eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-cccce
Q 001159 842 ESAACIALSKNDSYVMSAS--GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 916 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 916 (1135)
..+.+.++|+|++.+|... ++ .+.++... .....+. ....++.-.|++ ++...+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 4788999999999887765 44 45555543 3333322 233788889999 677666666666667763 33333
Q ss_pred ee-EEec--CcCCCeEEEEEcCCCCeEEEEc---CCCcEEEEeCCCCcee----ceeeeecCCCCCCCCCCceEEEECCC
Q 001159 917 VK-TKLK--GHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKL----KSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 917 ~~-~~l~--~h~~~i~~l~~s~d~~~l~s~~---~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
.. ..+. .-.+.|+++.+||||.++|... .++.|.+=-+.....- ....+...... ...+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCC
Confidence 22 1122 1122899999999999888765 3466766655422211 01111111111 157889999999
Q ss_pred CcEEEEE--ecCeEEE-EecCCce
Q 001159 987 QTHLLVV--HESQISV-YDSKLEC 1007 (1135)
Q Consensus 987 g~~l~~~--~d~~v~v-wd~~~~~ 1007 (1135)
+.+++.+ .+..+.. ....+..
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccCCc
Confidence 9988884 3443433 3334433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0025 Score=59.64 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=60.0
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|.||+|+..|+..+|..|+++....+...+.+++++|..+....++.+++....++. .+.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4454 9999999999999999999999999999888887777888999988877777766665555543 2444
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555555544
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.46 Score=51.94 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=74.6
Q ss_pred ccEEEEEE-cCCeEEEEeCcCCC-c---eeEecC---CC----CcEEEEEEcCCCCEEEEEecC--CCCCCeEEEEECCC
Q 001159 511 IQFIFSTA-IDGKIKAWLYDYLG-S---RVDYDA---PG----NWCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESE 576 (1135)
Q Consensus 511 ~~~l~s~s-~dg~i~iwd~~~~~-~---~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~ 576 (1135)
.++|+..+ ..+.|.+.|+.+.- . ...+.. .. .....+..-|+|+.++++-.+ +++.+-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 36676666 67889999987432 1 122221 10 123344455899998876543 34556799999998
Q ss_pred CeEEEEeecccC--CceeEEEecCCCCEEEEEeC--------------------CCeEEEEECCCCceEEEEeCCCCCCC
Q 001159 577 GAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGD--------------------EFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 577 ~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+.......... ..-..+.+.|..+.+++... ..++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765433 12345778888888888642 35799999999999999987643223
Q ss_pred cceEEEcC--CCCEEEEEEC-CCcEEEE
Q 001159 635 SPRLRFNK--EGSLLAVTTS-DNGIKIL 659 (1135)
Q Consensus 635 v~~~~~~~--~~~~l~~~~~-dg~i~iw 659 (1135)
...+.|.. +..+-++++. ..+|..|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEE
Confidence 45666654 3444333332 3344444
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.16 Score=60.21 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=114.3
Q ss_pred eEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCC------CcEEEEEccccee--eEEecCcCCCeEEEEE
Q 001159 863 KVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEV--KTKLKGHQNRITGLAF 933 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~i~~l~~ 933 (1135)
.+..||..+.+-...-.-..... .+++.. ++.+.+.|+.+ ..+..||..+++- +..+....... + +.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~-~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-S-LA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-e-EE
Confidence 46778877654221111111111 223333 56788888854 3477888776642 22222111111 1 22
Q ss_pred cCCCCeEEEEcCCC-----cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe-c------------
Q 001159 934 SPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E------------ 995 (1135)
Q Consensus 934 s~d~~~l~s~~~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d------------ 995 (1135)
.-+|+..+.||.++ ++..||..+.+-. .+....... .....+ .-+|+..++|+ +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~---~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK---MLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEE---ECCCCCccc---ccccEE--EECCEEEEEeCCCcccccccccccc
Confidence 33788888888764 4788998765421 111111110 111122 23566666542 2
Q ss_pred -----------CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC------CeEEEEECCC-ceeeeeeC
Q 001159 996 -----------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFRCRIG 1057 (1135)
Q Consensus 996 -----------~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d------g~I~vwd~~~-~~~~~~~~ 1057 (1135)
..+..||.....-....+.. .......+..-+|++.+.|+.+ ..|..||.++ .+-...-.
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 24778888333322222211 1112222334567887888764 2467899887 44332111
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCC--cEEEEecCCCccccCCCCCCCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDN 1115 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~v~~W~~~~~~~~~~~~~~~~~ 1115 (1135)
++.. ....+++-. ++++.++||.|| ++-.||+.+.+ |..-.|...
T Consensus 499 ----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~ 545 (557)
T PHA02713 499 ----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHS 545 (557)
T ss_pred ----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcC
Confidence 1111 111122222 678999999999 77788887766 877666643
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.19 Score=55.78 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCC-----------------cEEEEE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN-----------------NIIAIG 901 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~-----------------~~lasg 901 (1135)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|..+. +.-+....... -+++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 66789999999999888876 399999999999999998876554 22222221011 133445
Q ss_pred eCCCcEEEEEcccceeeEEec
Q 001159 902 MEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
-.-|.|.||.+.+|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 567889999988887776654
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0058 Score=41.87 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.1
Q ss_pred ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 872 ~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
++++..+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355677778999999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.9 Score=48.29 Aligned_cols=286 Identities=13% Similarity=0.161 Sum_probs=154.1
Q ss_pred CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee---c--CCCEEEEE
Q 001159 785 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS---K--NDSYVMSA 859 (1135)
Q Consensus 785 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s---~--dg~~la~~ 859 (1135)
...|++|+..|.++||+.......+. ..++...+ ..+|..++.- + +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEEe
Confidence 45688999999999997533222111 11111111 4455555532 2 34466666
Q ss_pred eCCeEEEEECCC--cc-------EEEEEeCCC--CCeEEEEEecCC----CcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 860 SGGKVSLFNMMT--FK-------VMTMFMSPP--PAATFLAFHPQD----NNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 860 ~dg~i~vwd~~~--~~-------~~~~~~~h~--~~v~~l~~sp~~----~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
.-.++.||.+.. +. .+.....|. .....++.-|.+ ..+|.+=+.||++.+|+-+.......+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888887731 11 122222233 223334444332 36888889999999999776554444443
Q ss_pred CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCc--------------------eeceeeeecCCCCCCCCCCceEEEEC
Q 001159 925 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE--------------------KLKSRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
---...++|.+.-+.+++++.+..+.-|....-. .+.....-.. |.. ...+..+.++
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~--~l~i~v~~~~ 250 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQ--ALDIQVVRFS 250 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-Cce--eEEEEEEEcC
Confidence 2223457888888899999998888888653210 0000000000 000 0122333444
Q ss_pred CCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEee----CCC---EEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 985 NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC----DGL---LVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 985 ~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~----d~~---~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
.....+++-+.+.+.+.+.+|....... .+ -.+.....|.. ++. .+++++.++.+.||.=.+..--+.+.
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~l~~~kr-Ld--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~ 327 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGSLRFQKR-LD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP 327 (418)
T ss_pred CCCceEEEEecceEEEEcCCCeEEEEEe-cC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC
Confidence 4555566666677777777653332222 22 11222222222 222 47888899999999866544444332
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccCCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~~ 1110 (1135)
. .++ .+.++..+.-..+|++=+++|.+.+-=+.+.-..+..+
T Consensus 328 ~----------~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p 369 (418)
T PF14727_consen 328 H----------VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVP 369 (418)
T ss_pred C----------CCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCC
Confidence 1 112 22222222223589999999999998777755444433
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.054 Score=59.19 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-----EEEEcCCeEEEEeCcCCCc-eeE-ecC
Q 001159 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RVD-YDA 539 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~s~dg~i~iwd~~~~~~-~~~-~~~ 539 (1135)
.+++.++.....++-.|++.|+.+..+.-|.. |+-+.+.|+..+..+ +.|-.|+.|.-||.+-... ... ...
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34677888888899999999999999987776 777777777655444 4466788899999885444 111 111
Q ss_pred C----CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE-EEeecccCCceeEEEecCCCCEEEEEeCCCeEEE
Q 001159 540 P----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 540 ~----~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 614 (1135)
+ .....|.+-..+| ++++|+. +|.|++||- .+... ..+++... .|..+..+.+|++|++.+. ..+.+
T Consensus 425 kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdr-i~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlL 496 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDR-IGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLL 496 (644)
T ss_pred cccccccccceeeecCCc-eEEEeec----CCcEEeehh-hhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEE
Confidence 1 2245666666665 6666664 778999997 44443 44555555 8999999999999887764 45555
Q ss_pred EEC
Q 001159 615 WDM 617 (1135)
Q Consensus 615 wd~ 617 (1135)
.++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 554
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.49 E-value=2 Score=48.03 Aligned_cols=281 Identities=10% Similarity=0.114 Sum_probs=148.4
Q ss_pred ecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-----CCCeEEEEeCC
Q 001159 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGLMLGVAFSK 429 (1135)
Q Consensus 355 sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----d~~~las~~~d 429 (1135)
+++++..+++|+..|.++||+...+.......+ +-..-..+|..++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344555788999999999999865442211000 0112345677766532 2234444 456
Q ss_pred CeEEEEEeCCC-------CceeeeeEeecccC--CEEEEEEecC----CCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 430 HIVHLYTYNPT-------GELRQHLEIDAHVG--GVNDIAFAHP----NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 430 g~i~iwd~~~~-------~~~~~~~~l~~h~~--~v~~v~~s~d----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
..+.||.+... .... ...+..|.- ....++.-|- ++. +|..=+-||.+.+++-+.....+.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 67888887322 1111 112223332 2334444332 233 788889999999999554443444433
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-----------------------eeEecCCCC--cEEEEEEcC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDAPGN--WCTMMAYSA 551 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------~~~~~~~~~--~i~~~~~s~ 551 (1135)
.---..+++.+.. +.+++++.+..+..|....... ...+...+. .|..+.++.
T Consensus 174 ~llPgPl~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 174 FLLPGPLCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CCCCcCeEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 2222234555555 6799999999999886532110 011111111 233344443
Q ss_pred CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC----CC---CEEEEEeCCCeEEEEECCCCceEE
Q 001159 552 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
....+++-+ ...+.+.+. +|.+....+-.-. +.....|.. ++ ..++.++.++++.||.= .+++.
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~W 322 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVW 322 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEE
Confidence 444444443 566777775 4655444333221 222222221 22 24788889999999853 34444
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
........-.+.-..|..-...|++-+.+|.+.+-=+-|..
T Consensus 323 sA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 323 SAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred ecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 43332211112222233334588888999999998776663
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.42 E-value=1 Score=49.55 Aligned_cols=245 Identities=14% Similarity=0.118 Sum_probs=118.5
Q ss_pred ceEEEEeecCCCEEEEEeCCeEEEEECCCccE---EEEEe----CCCCCeEEEEEecC---CCcEEEEEeCC--------
Q 001159 843 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMFM----SPPPAATFLAFHPQ---DNNIIAIGMED-------- 904 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~h~~~v~~l~~sp~---~~~~lasg~~d-------- 904 (1135)
..++|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988876689999999 44443 22221 12345789999982 13333333321
Q ss_pred CcEEEEEcccc-------e-eeEEecC---cCCCeEEEEEcCCCCeEEEEcCCCc-------------EEEEeCCCCcee
Q 001159 905 SSVQIYNVRVD-------E-VKTKLKG---HQNRITGLAFSPTLNALVSSGADAQ-------------LCMWSIDKWEKL 960 (1135)
Q Consensus 905 g~v~iwd~~~~-------~-~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~-------------i~iwd~~~~~~~ 960 (1135)
..|.-|.+..+ + .+..+.. .......|+|.|||.+.++.+..+. |.-.+.+. +..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444333 1 1112222 1223467999999988888875543 11111111 000
Q ss_pred ceeeeecCCCCC-----CCCCCceEEEECCC-CcEEEE--EecCeEEEEec-CCce----------------eeccCCC-
Q 001159 961 KSRFIQAPAGRQ-----SPLVGETKVQFHND-QTHLLV--VHESQISVYDS-KLEC----------------SRSWSPK- 1014 (1135)
Q Consensus 961 ~~~~~~~~~~~~-----~~~~~v~~~~~s~d-g~~l~~--~~d~~v~vwd~-~~~~----------------~~~~~~~- 1014 (1135)
.........+.. ........++|+|. |.++++ +.+..=.|.-+ .+.- .......
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 000000000000 00123467999999 777776 33332222222 1110 0000000
Q ss_pred --------CCCCCCEEEEEEee-------CCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1015 --------DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1015 --------~~h~~~i~~~~~s~-------d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
-.+...+..+.|-. +|.++++.-..+.|....++++..+.... ... .....+++.+.+.
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~----~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL----GGFGGRPRDVAQG 314 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC----TTSSS-EEEEEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc----ccCCCCceEEEEc
Confidence 01234566677753 45566666666788888877553322111 000 1122357788888
Q ss_pred CCCCCEEEEEecCCcEE
Q 001159 1080 PSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1080 ~~~~~~l~sg~~dg~v~ 1096 (1135)
| ||.+.++.+.+|.|+
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 8 788888888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.18 Score=52.93 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=89.9
Q ss_pred CeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe-CCCCceec
Q 001159 884 AATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEKLK 961 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd-~~~~~~~~ 961 (1135)
.+.+.++++ +++.+|... .++.-.+|-...+.....+. -...++...|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 688999999 676666554 23333344333333333321 223788899999988887777777777774 2333211
Q ss_pred eeeeecCCCCCCCCCCceEEEECCCCcEEEEEe----cCeEEEEec--CCce-eec----cCCCCCCCCCEEEEEEeeCC
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS--KLEC-SRS----WSPKDALPAPISSAIYSCDG 1030 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~v~vwd~--~~~~-~~~----~~~~~~h~~~i~~~~~s~d~ 1030 (1135)
...+...... ..|..+.+||||..+|... ++.|.|--+ .... ... ..........++.++|.+++
T Consensus 102 ~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1112211110 1689999999999998832 677887766 1111 111 11111124688999999999
Q ss_pred CEEEEEeCCCe
Q 001159 1031 LLVYAGFCDGA 1041 (1135)
Q Consensus 1031 ~~l~~~~~dg~ 1041 (1135)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 98777655443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.074 Score=63.54 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=98.6
Q ss_pred CCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC-eeEEEeeccC---CccEEEEEEcCCeEEEEeCcCCCceeE-ec-
Q 001159 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKE---SIQFIFSTAIDGKIKAWLYDYLGSRVD-YD- 538 (1135)
Q Consensus 465 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~- 538 (1135)
.+.++|........|+-.|++.|+.+..+..|... |..++-.... .....+.|-.++.+..||.+-.+.... -.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33434555566789999999999999999887654 6666532110 124567788889999999987653221 11
Q ss_pred ---CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 539 ---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 539 ---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
......+|++-+.+| +||+|+. +|.|++||--..+....+.+... +|..++.+.||+++++.+. ..+.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEE
Confidence 123467788888777 5556653 88899999433233334455444 8999999999999988765 456666
Q ss_pred EC
Q 001159 616 DM 617 (1135)
Q Consensus 616 d~ 617 (1135)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 64
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.76 Score=47.16 Aligned_cols=178 Identities=11% Similarity=0.123 Sum_probs=111.6
Q ss_pred EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec--CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 878 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 878 ~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
+.+-...+.++.|+| +.+.|++......-.+|=-.+|+.+.++. +-. ..-++.+.-++++.++--.++.+.++.++
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 344555699999999 66777767666666666666788887754 422 34578888899999888889999999887
Q ss_pred CCceeceeee-ecCCCCCCC-CCCceEEEECCCCcEEEEEe-cCeEEEEecCCce-eeccCCCCCC-------CCCEEEE
Q 001159 956 KWEKLKSRFI-QAPAGRQSP-LVGETKVQFHNDQTHLLVVH-ESQISVYDSKLEC-SRSWSPKDAL-------PAPISSA 1024 (1135)
Q Consensus 956 ~~~~~~~~~~-~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~-d~~v~vwd~~~~~-~~~~~~~~~h-------~~~i~~~ 1024 (1135)
.......... +..-+.... ..+--.++|+|....|.+.. .+-+.||.+++.. .........+ -..|+++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 6632211111 111111110 14556899999998888864 4556776662111 1111111111 2346777
Q ss_pred EEee-CCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 1025 IYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 1025 ~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.|.+ .+.+|+.+.+++.+...|.. |+.+..+..
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL 272 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSL 272 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecC-CCeeeeEEe
Confidence 7875 56678888888888888887 454555543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.075 Score=58.15 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=96.3
Q ss_pred EEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCC--eE-----EEEcCCCcEEEEeCCCCceeceeeeecCC
Q 001159 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN--AL-----VSSGADAQLCMWSIDKWEKLKSRFIQAPA 969 (1135)
Q Consensus 897 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~--~l-----~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 969 (1135)
+|.++..-..++-.|++.|+.+.++.-|.+ |+-+.+.|+.+ .| +.|-.|..|.-||..-...- .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 444555567788999999999999987776 88888888753 22 23445777889998743321 111122
Q ss_pred CCCCC-CCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 970 GRQSP-LVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 970 ~~~~~-~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|.-. ...-.|.+-..+|..++.+.+|.|++||-.+....+..+. ...+|..+..+.||++|++. .+..+.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPg--LG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPG--LGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccc--cCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 22111 1233455555666555557899999999955555554443 38899999999999998854 56777776654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.065 Score=59.72 Aligned_cols=157 Identities=13% Similarity=0.178 Sum_probs=91.7
Q ss_pred CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC----CCeEEEEcCCCcEEEEeCC
Q 001159 882 PPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT----LNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d----~~~l~s~~~D~~i~iwd~~ 955 (1135)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|.|- -..|...-..+.|.+|.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35788999984 444444432 344443322 2233444 34899999985 3356667778889999886
Q ss_pred CCceeceeee--ecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCC
Q 001159 956 KWEKLKSRFI--QAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG 1030 (1135)
Q Consensus 956 ~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~ 1030 (1135)
.......+.+ +.-.-......-...+.|+|....|++ +....=.++++ +...++.-... .+-|.|.+|..||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcC
Confidence 3221111111 111100111123367899999999998 44443345666 33333322222 6789999999999
Q ss_pred CEEEEEe-CCCeEEEEECCC
Q 001159 1031 LLVYAGF-CDGAIGVFDAET 1049 (1135)
Q Consensus 1031 ~~l~~~~-~dg~I~vwd~~~ 1049 (1135)
++|+++- ..=.-+|||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 9877663 334578898664
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.22 Score=43.17 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=56.2
Q ss_pred EEEEEEec---CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC
Q 001159 456 VNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (1135)
Q Consensus 456 v~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 532 (1135)
|+++++.. ||.. -|+.|+.|..|++|+ ....+..+. ....|.+++-... ..++.+..+|+|-+|+-. .
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~--~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDRS--Q 72 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeCc--c
Confidence 55666554 5555 799999999999998 346677776 4556777775443 579999999999999642 3
Q ss_pred ceeEecCCCCcEEEEEE
Q 001159 533 SRVDYDAPGNWCTMMAY 549 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~ 549 (1135)
.....+.... +.++++
T Consensus 73 RlWRiKSK~~-~~~~~~ 88 (111)
T PF14783_consen 73 RLWRIKSKNQ-VTSMAF 88 (111)
T ss_pred eeeeeccCCC-eEEEEE
Confidence 3333343333 444443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.31 E-value=2.3 Score=46.78 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=59.3
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----CCeE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~~~l 423 (1135)
..++|+|.|||+ ++++ ...|.|.+++ ..+.... .+ -+ ...+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v--~~--------~~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PV--AD--------LPEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--ee--cc--------cccccccccCCcccceeccccCCCCEEE
Confidence 578999999997 6654 5699999999 3343210 00 00 01224455677899999994 4433
Q ss_pred EEEeCC--------CeEEEEEeCCC-Ccee---ee-eEeec---ccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 424 GVAFSK--------HIVHLYTYNPT-GELR---QH-LEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 424 as~~~d--------g~i~iwd~~~~-~~~~---~~-~~l~~---h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
++.+.. ..|.-|....+ ..+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 333321 24555655544 1111 11 11122 223456799999995 455554443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.58 Score=45.94 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=43.0
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 001159 846 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg 901 (1135)
.+++..+|++.++.- .++|.-.|..+|+.+.+++-+...|+|++|--.+-.++.+.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 355566888766665 78999999999999999999999999999964222344433
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.38 Score=56.98 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=123.5
Q ss_pred cCCCCeEEEEeCC------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC------CcEEEEEc
Q 001159 417 GPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDV 484 (1135)
Q Consensus 417 spd~~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------~~i~iwd~ 484 (1135)
+..+.++++|+.+ ..+..||..++... ....+. +...-.+++... +. +.++||.| .++..||.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecC
Confidence 3345666777766 35888888876322 222222 222344455543 44 78888888 36778887
Q ss_pred CCCeeee--eecC--CCCCeeEEEeeccCCccEEEEEEcCCe-----EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE
Q 001159 485 VAGRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 485 ~~~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
.+.+-.. .+.. +...+..+ +|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|..
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred CCCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 7766332 1211 12222222 4478888888865 777877765543332222211111222335666
Q ss_pred EEEEecCCCCC--CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeC
Q 001159 556 LFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 556 l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~ 628 (1135)
.++||.+...+ ..+..||..+++-...-.-.....-..++. -++..++.||.|+ +|..||..+.+....-..
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 66776544332 678899998876543322222111112222 2456667777665 377788887665444222
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCC
Q 001159 629 DGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 664 (1135)
......+..+. -++...++|+.|| +|..||..++
T Consensus 510 ~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 510 TSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 11111111222 2466777887765 4556665544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.15 Score=44.29 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=65.3
Q ss_pred eeEEEEe---cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 349 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 349 V~~v~~s---p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
|+++++. -||+.-|++|+.|..|+||+-+. .+.+ -...+.|.++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 4555554 46666788899999999999542 2211 124556888877766 66999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec---CCCeEEEEEEcCCCcEE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~d~~i~ 480 (1135)
+..+|+|-+|+-.. +..+ .+ .+..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999998643 2222 22 222366665543 3433 578887777663
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.02 E-value=2 Score=44.20 Aligned_cols=196 Identities=10% Similarity=0.068 Sum_probs=117.2
Q ss_pred EEEEEecCCcceeEecccc--eeeeEEeccccCCCCCcccccccCeeecCCCCccee-ccCCCCCCCCCceEEEEeecCC
Q 001159 777 VRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIALSKND 853 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~i~~l~~s~dg 853 (1135)
..+.|..+|..+-+.+.-| .++.+ ++.+|+... ..+.. ...-..++...|.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~----------------------d~~tg~~~~~~~l~~----~~FgEGit~~~d~ 101 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKV----------------------DLETGKVLQSVPLPP----RYFGEGITILGDK 101 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEE----------------------ETTTSSEEEEEE-TT----T--EEEEEEETTE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEE----------------------ECCCCcEEEEEECCc----cccceeEEEECCE
Confidence 7888888888777776654 44444 555555432 22322 3444556665544
Q ss_pred CEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CCe
Q 001159 854 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NRI 928 (1135)
Q Consensus 854 ~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~i 928 (1135)
-+..+--++...+||..+.+.+.++.- .+.=..++. +++.|+.......++++|..+-+....+.-.. ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 444444489999999999999998863 345566663 55667666667789999988777666554322 246
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC-------CCCCCCCCceEEEECCCCcEEEEEecCeEEEE
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1001 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vw 1001 (1135)
+.|.|- +|...|=.=....|...|..+|+.....-+..+. .......-.+.+|+.|.+..+.+++..-=++|
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ly 256 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLY 256 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceE
Confidence 667775 7888887777778888999998866544322211 11111244689999998887777655444444
Q ss_pred ec
Q 001159 1002 DS 1003 (1135)
Q Consensus 1002 d~ 1003 (1135)
.+
T Consensus 257 eV 258 (264)
T PF05096_consen 257 EV 258 (264)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.9 Score=44.32 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=109.0
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.|-...|+++.|+|+.+.|.+..+...-.||=...|..++.. .+.+. ..-..+.|..+|+ +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 345555999999999999999988887777766667766543 34442 2356788888887 7777788888988887
Q ss_pred CCCeeeee-------ec--CC-CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe---cCC-------CCcE
Q 001159 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAP-------GNWC 544 (1135)
Q Consensus 485 ~~~~~~~~-------~~--~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~-------~~~i 544 (1135)
..+..+.. +. .+ +.....++|.|.. ..|+.+-.-+-+.||.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 76532221 11 12 5567789998866 67888887777777766533211111 111 1256
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.++.|++....|++-+ ++.+.+.-.|.. |..+..
T Consensus 236 Sgl~~~~~~~~LLVLS---~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLS---DESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEe---cCCceEEEEecC-CCeeee
Confidence 7788887666666555 346667666654 443433
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.024 Score=40.71 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=29.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccc
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~ 381 (1135)
...|.+++|+|... ++|.|+.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8999999999999999 4443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.85 E-value=3.8 Score=45.15 Aligned_cols=257 Identities=13% Similarity=0.117 Sum_probs=108.2
Q ss_pred eeeEEeec--C-CCCeeEEEEe-----------cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 337 KTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 337 ~~~~~~~~--h-~~~V~~v~~s-----------p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
++.+..+. + .++.-..-|+ .+.++|++-|-..+.|.|.|+.+.... .++.++-. +..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~----P~l~KvIe-----~~e 122 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRK----PRLHKVIE-----PEE 122 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-----EEEEEE------HHH
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCC----CceEeeeC-----HHH
Confidence 45555554 3 3455555555 245555555557889999999853221 11111100 001
Q ss_pred hcc-CCCcceEEEEEcCCCCeEEEE--eC----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-
Q 001159 403 LLN-DAAISVNRCVWGPDGLMLGVA--FS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG- 474 (1135)
Q Consensus 403 ~~~-~h~~~V~~v~~spd~~~las~--~~----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~- 474 (1135)
+.. ..-..-..+---|+|+.++++ .. .|-+.+.|-++.+.......-.+....-..+.|.|.-+ .++|..
T Consensus 123 v~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeW 200 (461)
T PF05694_consen 123 VFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEW 200 (461)
T ss_dssp HHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B-
T ss_pred HHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEecc
Confidence 111 011112223334688888885 22 34577777776443332111111122346677777666 666654
Q ss_pred -------------------CCCcEEEEEcCCCeeeeeecCCC--CCeeEEEeeccCCccE-EEEEEcCCeEEEEeC-cCC
Q 001159 475 -------------------DDKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQF-IFSTAIDGKIKAWLY-DYL 531 (1135)
Q Consensus 475 -------------------~d~~i~iwd~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~-l~s~s~dg~i~iwd~-~~~ 531 (1135)
...++.+||+.+.+.++++.--. .....+.|..+++..+ ++.+....+|..|-- +.+
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 34689999999999999886433 2355666665544333 333344555555533 222
Q ss_pred C----ceeEecCC-----------------CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC---eEEEEee-cc
Q 001159 532 G----SRVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG---AIKRTYS-GF 586 (1135)
Q Consensus 532 ~----~~~~~~~~-----------------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~-~~ 586 (1135)
+ .+..+... ..-|+.+..|.|.++|+.... ..|.|+.||+... +++.+.. +.
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 1 11111111 234789999999999998765 5888999999753 2332221 11
Q ss_pred c--------------CCceeEEEecCCCCEEEEEe
Q 001159 587 R--------------KRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 587 ~--------------~~~v~~i~~s~~~~~l~~~~ 607 (1135)
. .+...-+..|.||++|+...
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 00124467777887777654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.025 Score=55.20 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=72.0
Q ss_pred CCEEEEEe-CCeEEEEECCCcc-EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-CCeE
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 929 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i~ 929 (1135)
+.-+++|. +|.|.+|+..-.. ....+..-...|.++.-.-+++.+..++..||.||.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34556665 9999999876211 1111111223344444333356688999999999999999999888887887 6667
Q ss_pred EEEEcCCCCeEEEE--cCCCcEEEEeCCCC
Q 001159 930 GLAFSPTLNALVSS--GADAQLCMWSIDKW 957 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~--~~D~~i~iwd~~~~ 957 (1135)
.+..+..++.++++ |.|..++.|++..-
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 77777777777777 78888888887753
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.26 Score=58.95 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=70.8
Q ss_pred EEEEEeccceEEEEEcCCccc-cccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~ 439 (1135)
.+|.|+..|.|...|+.+.-. ... -..-.++|++++|+.||+.++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~-------------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQ-------------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhc-------------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 577888888998888775321 111 123567899999999999999999999999999999
Q ss_pred CCceeeeeEeecccCCE---EEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 440 TGELRQHLEIDAHVGGV---NDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v---~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
++.++ .+..|..++ ..+.+..++. .++++...|. +|.+
T Consensus 162 ~k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred Cccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 88776 344444444 4444555555 6888887775 6654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.76 E-value=2.9 Score=43.46 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=118.9
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcc------cc-eeeEEecC-----cCCCeEEEEEcCCCC------------eE
Q 001159 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR------VD-EVKTKLKG-----HQNRITGLAFSPTLN------------AL 940 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~-~~~~~l~~-----h~~~i~~l~~s~d~~------------~l 940 (1135)
-..|+|+| .+.+-++....+...+||.. .. .++-.+.. -....+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46799999 77777777777899999986 11 22333332 234678888875432 35
Q ss_pred EEEcCCCcEEEEeCCCCceec-eeeeecCCCCCCCCCCceEEEEC--CCCcEEEEE--ecCeEEEEecCCceeec---cC
Q 001159 941 VSSGADAQLCMWSIDKWEKLK-SRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVV--HESQISVYDSKLECSRS---WS 1012 (1135)
Q Consensus 941 ~s~~~D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~--~d~~v~vwd~~~~~~~~---~~ 1012 (1135)
+.+++||+|.-|...-..... ...+....+.. ..--..+++- ..+.+|..+ ..++|.|||.+...+.. +.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~--gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ--GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCC--cceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 778899999999864433210 00111111111 0222345554 335666664 68999999985554321 10
Q ss_pred ----CCCCCCCCEEE------EEE---eeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1013 ----PKDALPAPISS------AIY---SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1013 ----~~~~h~~~i~~------~~~---s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
+...-...|.. +.| .+++..=+.|-.-|.|-+||.. |++++++.....+ ..+-.++.-
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~L--------NaPWG~a~A 252 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRL--------NAPWGLAIA 252 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcc--------cCCceeeeC
Confidence 00000111111 111 2333333444556899999998 7888887644322 112223322
Q ss_pred C-----CCCCEEEEEecCCcEEEEecCCCc
Q 001159 1080 P-----SEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1080 ~-----~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
| -.+.+|+---.||+|-.+|..+++
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 2 245788888889999999998877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.76 E-value=2.4 Score=51.78 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=97.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee-------------EEEeeccCCccEEEEEEc----------CCeEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKA 525 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~s~----------dg~i~i 525 (1135)
.++.++.|+.+.-.|.++|+.+..+. ..+.|. .+.-.|.-.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 57778889999999999999887763 222221 011111111245666643 688999
Q ss_pred EeCcCCCceeEecCC---------CC--------cE-EEEEEcCCCCEEEEEec--------------CCCCCCeEEEEE
Q 001159 526 WLYDYLGSRVDYDAP---------GN--------WC-TMMAYSADGTRLFSCGT--------------SKEGESHLVEWN 573 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~s~~~~~l~~~~~--------------~~~~~~~i~~wd 573 (1135)
+|.++++....+... .+ .+ ..+++++....++.... ++.-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999887765421 00 11 23455666555554321 011245688889
Q ss_pred CCCCeEEEEeec-ccCC-------ceeEEEecC-CCC---EEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 574 ESEGAIKRTYSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 574 ~~~~~~~~~~~~-~~~~-------~v~~i~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.+||+....++. |++- ...-+.+.. +|+ .++.++.+|.+++.|.++|+++....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 999999988865 3320 111122332 453 68888999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.53 Score=55.96 Aligned_cols=188 Identities=10% Similarity=0.061 Sum_probs=95.4
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCccEEEEEeC-CCCC-eEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce
Q 001159 851 KNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPA-ATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDE 916 (1135)
Q Consensus 851 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-h~~~-v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~ 916 (1135)
-++...+.|+ + ..+..||..+..-. .+.. .... -.+++.. ++++.+.|+.++ ++..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3667777776 3 24778887765321 1111 1111 1123332 678888898764 48889987653
Q ss_pred --eeEEecCcCCCeEEEEEcCCCCeEEEEcCCC-----------------------cEEEEeCCCCceeceeeeecCCCC
Q 001159 917 --VKTKLKGHQNRITGLAFSPTLNALVSSGADA-----------------------QLCMWSIDKWEKLKSRFIQAPAGR 971 (1135)
Q Consensus 917 --~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~ 971 (1135)
.+..+.........++ -+|++.+.||.++ .+..||..+.+=. .+.....
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~---~v~~m~~- 452 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE---TLPNFWT- 452 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe---ecCCCCc-
Confidence 2222222111122222 3788888888653 3667877765411 1111110
Q ss_pred CCCCCCceEEEECCCCcEEEEEe-c------CeEEEEecCC-ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC--e
Q 001159 972 QSPLVGETKVQFHNDQTHLLVVH-E------SQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG--A 1041 (1135)
Q Consensus 972 ~~~~~~v~~~~~s~dg~~l~~~~-d------~~v~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg--~ 1041 (1135)
......+..-+|+..++|+ + ..+..||... +.-.............. +..-+|++.++|+.|| .
T Consensus 453 ----~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 453 ----GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYML 526 (557)
T ss_pred ----ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce--eEEECCEEEEEeeecceee
Confidence 0011112233455555542 2 2467888843 33222222211111122 2234888999999998 7
Q ss_pred EEEEECCCceee
Q 001159 1042 IGVFDAETLRFR 1053 (1135)
Q Consensus 1042 I~vwd~~~~~~~ 1053 (1135)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 788888876544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.12 Score=61.58 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.3
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
.+-.++.|+..|.+-..|+.+. +.+...=..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4557889999999988888764 111111112356899999999999 889999999999999999999999988888
Q ss_pred CeeEEEeec-cCCccEEEEEEcCCeEEEEeC
Q 001159 499 PVYSVCPHH-KESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 499 ~v~~i~~~~-~~~~~~l~s~s~dg~i~iwd~ 528 (1135)
+++++-++. .+++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 888776543 223346777777776 5543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.2 Score=52.70 Aligned_cols=236 Identities=14% Similarity=0.139 Sum_probs=125.5
Q ss_pred ecCCCEEEEEe-C------CeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccc
Q 001159 850 SKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVD 915 (1135)
Q Consensus 850 s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~ 915 (1135)
+..+.++++|+ . ..+..+|..++.-.....- ....-.++++. ++.+.++|+.| .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33456667776 4 3588899887633222211 22234556665 46888999998 35778887765
Q ss_pred ee--eEEecCcCCCeEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 916 EV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 916 ~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
+= +..+.......... .-+|.+.|.||.||. |-.||..+.+-. ....... ..-..-.-.-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~---~va~m~~-----~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT---PVAPMLT-----RRSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCccc---ccCCCCc-----ceeeeEEEEECCE
Confidence 42 22222111111111 237889999999864 677777765411 1110100 0011222234555
Q ss_pred EEEEE-ec------CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCe-----EEEEECCCceeeeee
Q 001159 989 HLLVV-HE------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-----IGVFDAETLRFRCRI 1056 (1135)
Q Consensus 989 ~l~~~-~d------~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~-----I~vwd~~~~~~~~~~ 1056 (1135)
..+++ .+ ..+..||...+.-....+.. ......-+-.-++.+++.|+.|+. |..||..+.+....-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 55553 22 45788988333332222211 111111133467888899988873 777888876655331
Q ss_pred CCceeccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCCCCC
Q 001159 1057 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~~~~ 1112 (1135)
... .......++-. ++.+.+.|+.|| +|-.||..+.+ |....+
T Consensus 508 ~m~---------~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 PMT---------SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cCc---------cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 110 11222222221 568889999997 57778777665 654433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.036 Score=54.17 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=44.2
Q ss_pred EEE-EecCeEEEEecC--CceeeccCCCCCCCCCEEE-EEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCce
Q 001159 990 LLV-VHESQISVYDSK--LECSRSWSPKDALPAPISS-AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1060 (1135)
Q Consensus 990 l~~-~~d~~v~vwd~~--~~~~~~~~~~~~h~~~i~~-~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1060 (1135)
+++ +.++.|.+|..+ +.....+... ...|.+ +.-..++.+..++..||.|+-|++.-++.++....|.
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcc---cccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 444 689999999883 2222222211 223332 3333466688999999999999999988887766553
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=3.1 Score=45.81 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEE-EEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCce
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQI-YNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 959 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~ 959 (1135)
...+..+.+.| ++.+++++ ..|.+.. ++ ..++.-... .+-...++++++.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688999999 77666655 4565543 22 222211122 233457899999999887665 4567665333343331
Q ss_pred eceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeC
Q 001159 960 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1038 (1135)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~ 1038 (1135)
=. .+..+... ....+..+++.+++..++++.+|.+.. .. .++.-........-......+.|..+++.+++| .
T Consensus 248 W~--~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 WS--KPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred cc--cccCCccc--cccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 11 11111000 013467889999998888888876653 33 333333322111113467888888777776654 7
Q ss_pred CCeEEEEEC
Q 001159 1039 DGAIGVFDA 1047 (1135)
Q Consensus 1039 dg~I~vwd~ 1047 (1135)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788877763
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.053 Score=39.01 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~ 438 (1135)
....|.+++|+|...+||.++.+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999984
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.7 Score=47.13 Aligned_cols=156 Identities=12% Similarity=0.190 Sum_probs=96.9
Q ss_pred hhHHHhhcccCCcceeeecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccc
Q 001159 303 SDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1135)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~ 382 (1135)
.+....+.+.+++..+..++-+..+.+ -......++|.++.||+|.+ ++|+--.+.+|.+++....+..
T Consensus 33 aNkqlfavrSggatgvvvkgpndDVpi----------Sfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPNDDVPI----------SFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCCCCCCc----------eeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh
Confidence 333455666666666666554422111 11112456999999999998 8999999999999998543322
Q ss_pred ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe
Q 001159 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1135)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s 462 (1135)
... ....+.....|....|+.+ .-+|..+..| +.+|.+...+ +.....+.|+..|....|+
T Consensus 102 l~~---------------~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 102 LEY---------------TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred hHH---------------HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEc
Confidence 110 0011223456899999876 6677776666 7777766542 2222455788899999999
Q ss_pred cCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 463 HPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
++..-.+|+|+-..+++.=+-++++.
T Consensus 163 ~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 163 PETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred cccceEeeeccccccccccEEEeece
Confidence 99885344444344555444444443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.91 E-value=3.4 Score=40.83 Aligned_cols=94 Identities=11% Similarity=0.068 Sum_probs=60.9
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcC--C-----CceeEecC----CCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDY--L-----GSRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~--~-----~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
-+.++|+.+. ..+.++-+.+-+|.-||.+. + +.+..+.. .....-.++...+|++.+++-. .++
T Consensus 160 sNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~ 234 (310)
T KOG4499|consen 160 SNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGT 234 (310)
T ss_pred CccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcE
Confidence 3456776433 24556667788888888443 2 12222221 1112234555667777776653 778
Q ss_pred EEEEECCCCeEEEEeecccCCceeEEEecCC
Q 001159 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
|...|+.+|+.+..+.-... .|++++|.-.
T Consensus 235 V~~~dp~tGK~L~eiklPt~-qitsccFgGk 264 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLPTP-QITSCCFGGK 264 (310)
T ss_pred EEEECCCCCcEEEEEEcCCC-ceEEEEecCC
Confidence 99999999999999998866 8999999743
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.82 E-value=5.9 Score=41.24 Aligned_cols=210 Identities=14% Similarity=0.129 Sum_probs=121.9
Q ss_pred CEEEEEEecCCCeEEEEEEcCCCcEEEEEcC------CC-eeeeeecC-----CCCCeeEEEeeccCC----------cc
Q 001159 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~~----------~~ 512 (1135)
.-+.|+|+|.+. +-++...-+...+||.. .. ..+-++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 67777778899999986 12 22333331 234566777764321 13
Q ss_pred EEEEEEcCCeEEEEeCcCCCc-----eeEecCC-CC-cEEEEEEc--CCCCEEEEEecCCCCCCeEEEEECCCCeEE--E
Q 001159 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP-GN-WCTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIK--R 581 (1135)
Q Consensus 513 ~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~-~~-~i~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~ 581 (1135)
.++.+++||+|.-|...-... ...+... .. ....+++. ..+.+|+.+-. ..++|.++|-.-.+.. .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997432222 1223221 22 33445554 34677777643 4788999985432221 0
Q ss_pred Eeeccc---CC-c--e---------eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC----
Q 001159 582 TYSGFR---KR-S--L---------GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 642 (1135)
Q Consensus 582 ~~~~~~---~~-~--v---------~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---- 642 (1135)
.|.... +. + | +-..-.+++..=+.+..-|.|-++|+. ++.++.+........-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 111100 00 0 1 111112222222333345789999986 77888886655555667787755
Q ss_pred --CCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 643 --EGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 643 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
.+.+|+---.||+|..||..++ +.+-.+
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L 287 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQL 287 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeee
Confidence 4667776667999999999888 433333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.8 Score=41.83 Aligned_cols=104 Identities=12% Similarity=0.058 Sum_probs=64.9
Q ss_pred CCCEEEEEe---CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCe
Q 001159 852 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 928 (1135)
Q Consensus 852 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i 928 (1135)
+|.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+-+-.-.+|.-+.+|.++-+++..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 556666665 357999999999887765433222211111110223444455788999999999888877763 4445
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCc
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
++++ .|++.|+.++...++++-|.++-.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhh
Confidence 6665 466667777666777777776644
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.1 Score=52.40 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=77.1
Q ss_pred CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeC-----
Q 001159 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 528 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~----- 528 (1135)
...-+.-+.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|...++|+.+++.+..+.|.+|--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444455455 33444455689999998887554332 4578999999999999999999999999999843
Q ss_pred cCCCc----ee--EecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 529 DYLGS----RV--DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 529 ~~~~~----~~--~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
....+ +. .+..+ .++|.+..|.++|..++.+| +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 22111 11 22223 36888999999998887763 46888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.24 E-value=18 Score=44.21 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=64.9
Q ss_pred EEeecCCCEEEEEeCCeEEEEECCCccEEEEEeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc--ccceeeEEec
Q 001159 847 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV--RVDEVKTKLK 922 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~--~~~~~~~~l~ 922 (1135)
.|+.|...++.+|-...+++||+...++++.... -...|+.+.+ .+..+++|..--.|.++.. +..+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 5667777788888889999999988777665432 3456888887 4567888876666655444 344433 332
Q ss_pred Cc--CCCeEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 923 GH--QNRITGLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 923 ~h--~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
.. ...|+++.+- |-..+|.+..=|.+.+-.+
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 21 2236666664 4456666665565555444
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.1 Score=52.51 Aligned_cols=125 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-CcCCCeEEEEEc--CCCCeEEEEcCCCcEEEEe
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFS--PTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~i~~l~~s--~d~~~l~s~~~D~~i~iwd 953 (1135)
++...-...+-+.-|. -++..++-+...++.|||...+.....-. ...+.|.++.|. ||++.+++.|-...|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3333334455555555 44555554455689999999887443322 457789999885 6889999999999999985
Q ss_pred CCC----CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 954 IDK----WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 954 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
-.. .+......+....-......+|.+..|.++|.++ ++.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECC
Confidence 421 1111111122111111122568899999999654 455678888886
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.2 Score=51.02 Aligned_cols=189 Identities=12% Similarity=-0.007 Sum_probs=90.7
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEccccee-
Q 001159 851 KNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEV- 917 (1135)
Q Consensus 851 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~~- 917 (1135)
.++..++.|+ + ..+..||..+.+-...-.-+.....+-+..- ++++.+.|+.+ ..+..||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4666666665 2 2477888877554221111111111111222 67788888865 3577788776542
Q ss_pred -eEEecCcCCCeEEEEEcCCCCeEEEEcCC------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEE
Q 001159 918 -KTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 990 (1135)
Q Consensus 918 -~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 990 (1135)
...+....... ++ ..-++++++.||.+ ..+..||..+.+-.. +...... .. ...+...+++..
T Consensus 372 ~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~----r~-~~~~~~~~~~iy 441 (534)
T PHA03098 372 EEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK---GSPLPIS----HY-GGCAIYHDGKIY 441 (534)
T ss_pred eCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee---cCCCCcc----cc-CceEEEECCEEE
Confidence 11222111111 11 22367777777732 357888887654211 1111100 01 112223355555
Q ss_pred EEEe-c--------CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCcee
Q 001159 991 LVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRF 1052 (1135)
Q Consensus 991 ~~~~-d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~ 1052 (1135)
+.|+ + ..+.+||.....-............... ..-++++++.|+.+ ..|.+||..+.+-
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL--CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE--EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5542 1 2378888833332222211100111112 22377888888765 4688888887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.2 Score=48.28 Aligned_cols=182 Identities=10% Similarity=0.080 Sum_probs=97.9
Q ss_pred eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe----cCcCCCeEEEEEcCCCC
Q 001159 863 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL----KGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l----~~h~~~i~~l~~s~d~~ 938 (1135)
.|+|+++. |.++..+.-..+++-.+.|+. + .-|+....||++++|++. |+.+... ......|....|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 48889875 555555443344888999996 4 566678899999999986 3333321 22333466666666664
Q ss_pred eEEEEcCCCcEE-EEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE--EecCeE--EEEecCC--ceeecc
Q 001159 939 ALVSSGADAQLC-MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQI--SVYDSKL--ECSRSW 1011 (1135)
Q Consensus 939 ~l~s~~~D~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~v--~vwd~~~--~~~~~~ 1011 (1135)
.+.+. +|.+. +-+.+.... .......+.. .+..+...-+++..... .-+..| .++..+. .....+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 34333 333333111 1111111111 11122222222221111 111111 1111111 111111
Q ss_pred CCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 1012 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1012 ~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
... ...+..+..||+.++|+.=..+|.|.+-.++..+.+|++...
T Consensus 213 ~~~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 213 SWP---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred CCC---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 111 356788999999999999999999999999999988888743
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.00 E-value=13 Score=45.31 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----------cee--eE-Ee--------cCcCCCeEEEEEcCC---CC
Q 001159 883 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------DEV--KT-KL--------KGHQNRITGLAFSPT---LN 938 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----------~~~--~~-~l--------~~h~~~i~~l~~s~d---~~ 938 (1135)
-.|..+.++| +|++||..|..| |.|-.+.. |+. .. .+ ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688999999 899999888766 44444431 111 11 11 134457899999987 47
Q ss_pred eEEEEcCCCcEEEEeCCCCc
Q 001159 939 ALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 939 ~l~s~~~D~~i~iwd~~~~~ 958 (1135)
.|+.-..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888899999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.7 Score=50.20 Aligned_cols=150 Identities=7% Similarity=-0.037 Sum_probs=70.9
Q ss_pred cEEEEEEcC-----CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC--CCeEEEEECCCCeEEEEee
Q 001159 512 QFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 512 ~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~ 584 (1135)
...+.|+.+ ..+..||..+.+-...-..........+..-+++..+.||....+ -..+..||+.+.+-...-.
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 666777765 346778776554322111111111111122345556666532211 2568899988765433211
Q ss_pred cccCCceeEEEecCCCCEEEEEeCC--------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC---
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD--- 653 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 653 (1135)
......-.+++ ..++..++.||.+ ..+.+||..+.+....-...........+. -++++++.|+.+
T Consensus 424 ~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 424 LPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEY 500 (534)
T ss_pred CCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCc
Confidence 11110111222 2245555666532 238888988765433221111111112222 267777777654
Q ss_pred --CcEEEEEcCCC
Q 001159 654 --NGIKILANSDG 664 (1135)
Q Consensus 654 --g~i~iwd~~~~ 664 (1135)
+.+.+||..+.
T Consensus 501 ~~~~v~~yd~~~~ 513 (534)
T PHA03098 501 YINEIEVYDDKTN 513 (534)
T ss_pred ccceeEEEeCCCC
Confidence 46778887665
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=8.2 Score=39.36 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=124.4
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceecee
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 963 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~ 963 (1135)
.-..++-+| ||..-+++...+.|--.|-.+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt--- 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT--- 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence 345677788 78888888888888888988998766555566667788899999888775544 4555666655422
Q ss_pred eeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEE
Q 001159 964 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1043 (1135)
Q Consensus 964 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~ 1043 (1135)
....+..+. ........|.++|.+.+++..|----.|.....+..+.... ...-..|+..|||..-++.-.+..|.
T Consensus 138 ~f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 138 RFPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred EeecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceE
Confidence 122222221 25677889999999999864322111222233333333332 33456788899999888777777787
Q ss_pred EEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1044 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1044 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
..|-.++... .+...... +.. .+ .+--+| -|..-+|....+.++.+|.+...
T Consensus 214 ridp~~~~ae-v~p~P~~~----~~g-sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 214 RIDPFAGHAE-VVPQPNAL----KAG-SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EcccccCCcc-eecCCCcc----ccc-cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 7777766222 22211110 111 11 122233 45677777777788888876654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=15 Score=41.34 Aligned_cols=154 Identities=10% Similarity=0.036 Sum_probs=87.2
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceee--EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceece
Q 001159 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~ 962 (1135)
...+..++ ++.+++.+..-..++-||- |+.. ..-......++++.|.+++.+++++ .+|. .+|..+.++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCcccc
Confidence 34456667 6777776654433333442 2211 1112234568999999998877655 5564 4444444431100
Q ss_pred eeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeE
Q 001159 963 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I 1042 (1135)
..+...... .....+..+.|.+++..++++.+|.+....-.++.-........-......+.|.++++.+++| .+|.|
T Consensus 316 ~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 316 FDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred cceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 001111000 0013478899999999999998888777655444433322122225678899998888867765 78887
Q ss_pred EEE
Q 001159 1043 GVF 1045 (1135)
Q Consensus 1043 ~vw 1045 (1135)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=4.2 Score=47.50 Aligned_cols=185 Identities=11% Similarity=-0.009 Sum_probs=89.7
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCC--CcEEEEEcccce--eeE
Q 001159 851 KNDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED--SSVQIYNVRVDE--VKT 919 (1135)
Q Consensus 851 ~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~--~~~ 919 (1135)
.++..+++|+ + .++..||..+.+-...-.-+.... .+++ .- ++.+.+.|+.+ ..+..||..+++ .+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3556666665 3 247778877654322111111111 1222 23 67888888864 357888876543 222
Q ss_pred EecCcCCCeEEEEEcCCCCeEEEEcCCC---cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 920 KLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 920 ~l~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
.+......... ..-+|+..+.||.++ .+..||..+.+=. ...... .. .. ...+..-+|+..+.| |
T Consensus 348 ~l~~~r~~~~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~---~~~~m~-~~---r~-~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAV--ASINNVIYVIGGHSETDTTTEYLLPNHDQWQ---FGPSTY-YP---HY-KSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEE--EEECCEEEEecCcCCCCccEEEEeCCCCEEE---eCCCCC-Cc---cc-cceEEEECCEEEEEC--C
Confidence 23211111112 233788888888654 4677887765421 111111 00 00 112223455555555 3
Q ss_pred eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCce
Q 001159 997 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLR 1051 (1135)
Q Consensus 997 ~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~ 1051 (1135)
.+.+||.....-........ . ....-+..-+|++.++|+.+ ..|.+||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~-~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIY-P-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCCCC-C-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57788884333322222111 1 11112223578888888765 346667766543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.67 Score=55.92 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCceEEEEeecCCCEEEEEe--C-CeEEEEECCCccEEE-----EEeCC------CCCeEEEEEecCCCcEEEEEeCCCc
Q 001159 841 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKVMT-----MFMSP------PPAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--d-g~i~vwd~~~~~~~~-----~~~~h------~~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
.-.+..++..+|++..++.. + -.|.+||+.+...-. -+..| ..-..++.|.|.-....|....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 55667777888888766654 3 369999997643221 12211 2345678888744456677888999
Q ss_pred EEEEEcccce-eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 907 VQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 907 v~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
|++..+.... ....+. -....++++|+|.|+.++.+-..|++.-|...-..... +..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcCC--CcceeEEEEec
Confidence 9998765332 222232 45678999999999999999999999998766543221 11111111 26789999998
Q ss_pred CCcEEEE
Q 001159 986 DQTHLLV 992 (1135)
Q Consensus 986 dg~~l~~ 992 (1135)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.41 E-value=10 Score=38.69 Aligned_cols=232 Identities=13% Similarity=0.105 Sum_probs=141.5
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 919 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 919 (1135)
......++-+|||..-.++. .+.|--.|..+|+....-.+....-..+...|+++.++. -+.. -|.-.|-++.+. .
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cCcc-eeEEecCcccce-E
Confidence 45567889999999888887 688888899999887777666777788888995444543 2221 354455544442 2
Q ss_pred Ee----cCcCCCeEEEEEcCCCCeEEEEcCC---------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 920 KL----KGHQNRITGLAFSPTLNALVSSGAD---------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 920 ~l----~~h~~~i~~l~~s~d~~~l~s~~~D---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+| +.-.+......|.++|.+.+++... +.|++|+...+ .....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------~gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------GGPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------CCCcceEECCC
Confidence 22 2223457788999999999987532 34556654433 23468889999
Q ss_pred CcEEEEE-ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccc
Q 001159 987 QTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1064 (1135)
Q Consensus 987 g~~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1064 (1135)
|...+++ .++.|-..|. .+ ....+.........-..+--+|.|+.-++....+.+..||-.+..-+ +.... .
T Consensus 200 Gsvwyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eypLP----g 273 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYPLP----G 273 (353)
T ss_pred CcEEEEeccccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eeeCC----C
Confidence 9988874 5666666666 33 33333333322233445556677887777777788888887764422 11111 0
Q ss_pred cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1065 YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
. . ..+.++.-.. .+..-.+--..|.|.-+|..+.+
T Consensus 274 s--~--arpys~rVD~-~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 274 S--K--ARPYSMRVDR-HGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred C--C--CCcceeeecc-CCcEEeeccccCceeecCcccce
Confidence 0 1 1122222222 23344445556778778877766
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.35 E-value=13 Score=39.77 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=80.9
Q ss_pred CCceEEEEeecCCCEEEEEeCCeE-EEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-cccceee
Q 001159 841 EESAACIALSKNDSYVMSASGGKV-SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i-~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~~~ 918 (1135)
...+..+..++||++++++..|.+ .-||--...-...-+.-..+|..|.|+| ++.+.+ ....|.|++=+ ....+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~-~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWM-LARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEE-EETTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEE-EeCCcEEEEccCCCCcccc
Confidence 566888889999999999986664 5677543211122222457899999999 666555 44889998887 2222221
Q ss_pred EE----ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe
Q 001159 919 TK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 994 (1135)
Q Consensus 919 ~~----l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 994 (1135)
.. +..-.-.+..++|.+++...|+++. |+ .+...+.++.=. ...... ........+.|.++.+-++.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~--~~~~~~---~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQ--KDRVGE---NVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-E--E-GGGT---TSSS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccce--ECcccc---CCCCceEEEEEcCCCceEEECC
Confidence 11 1122334889999999888886664 43 334445444111 111111 1114567899988888888899
Q ss_pred cCeEEEE
Q 001159 995 ESQISVY 1001 (1135)
Q Consensus 995 d~~v~vw 1001 (1135)
+|.+--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8887554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.81 Score=55.26 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=93.5
Q ss_pred CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-----eeecC------CCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFEG------HEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~------h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
+|..+...+|+....++..+.+-.|..+|+++-..- .-|.. ......++.|+|... ...+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566677778877545556666668899998753211 11111 223455677887654 456777889999
Q ss_pred EEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc---cCCceeEEEecCCC
Q 001159 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTTR 600 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~i~~s~~~ 600 (1135)
++..+........--.-....++++|+|.|+.++.|- ..|++.-|... ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 9886654333222222345789999999999999985 47788877653 4444444432 22368899998777
Q ss_pred CEEEE
Q 001159 601 NRFLA 605 (1135)
Q Consensus 601 ~~l~~ 605 (1135)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77665
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.2 Score=46.65 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCeEEEEc-----------CCC-cEEEEeCCCCc--eeceeeeecCCCCCCCCCCceEEEECCCCcEEE
Q 001159 926 NRITGLAFSPTLNALVSSG-----------ADA-QLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 991 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~-----------~D~-~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 991 (1135)
....+|+|.++|+++++.. ..+ .|.+++-..+. ..+...+.. +. .....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--EL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CC----CCccceeEecCC-EEE
Confidence 3467899999998887753 223 57666554322 111112211 11 234789999999 444
Q ss_pred EEecCeEEEE-ecCCc------e--e-eccCCC-CCCCCCEEEEEEeeCCCEEEEEeCC-------------------Ce
Q 001159 992 VVHESQISVY-DSKLE------C--S-RSWSPK-DALPAPISSAIYSCDGLLVYAGFCD-------------------GA 1041 (1135)
Q Consensus 992 ~~~d~~v~vw-d~~~~------~--~-~~~~~~-~~h~~~i~~~~~s~d~~~l~~~~~d-------------------g~ 1041 (1135)
+. ...|..| |..+. . + ..+... ..+......++|.|||.+.++-+.. |.
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 43 4445444 54221 1 1 112111 0013446789999999876654421 34
Q ss_pred EEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC
Q 001159 1042 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1042 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 1093 (1135)
|.-++.++++... +. ..-..+..++|+| +|+++++-..++
T Consensus 166 i~r~~pdg~~~e~-~a----------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLRV-VA----------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEEE-Ee----------cCcCCCccceECC-CCCEEEEccCCC
Confidence 5555555443221 11 1125567899998 678877755444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.13 Score=59.90 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=70.4
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEE-----------EecCCCcEEEEEeCCCcEEEEEcc-c
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLA-----------FHPQDNNIIAIGMEDSSVQIYNVR-V 914 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~-----------~sp~~~~~lasg~~dg~v~iwd~~-~ 914 (1135)
-|.++.-++..+. +++|++.+..+... ..+.+|...++.++ +|| ||..+|++..||.+++|-+. +
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeee
Confidence 3444666777776 68888776654322 44555776655543 688 89999999999999988754 2
Q ss_pred c----eeeEEecCcCC-CeEEEEEcCC-------C--CeEEEEc-CCCcEEEEeCCCCcee
Q 001159 915 D----EVKTKLKGHQN-RITGLAFSPT-------L--NALVSSG-ADAQLCMWSIDKWEKL 960 (1135)
Q Consensus 915 ~----~~~~~l~~h~~-~i~~l~~s~d-------~--~~l~s~~-~D~~i~iwd~~~~~~~ 960 (1135)
| .++...+.|.+ +-.|.-|... + .++++++ .+..+++|....++++
T Consensus 268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 35566677773 3333334322 1 2344443 4567999998888754
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.45 E-value=3.3 Score=46.51 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=80.8
Q ss_pred CCeEEEEEecCCCcEEEEEe-----------CCC-cEEEEEccc--ce--eeEEecCcCCCeEEEEEcCCCCeEEEEcCC
Q 001159 883 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 946 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 946 (1135)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+........+|++.++| ++++ ...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 3567888988 777666532 223 677776432 32 223443334456889999998 5554 444
Q ss_pred CcEEEEeCCCCcee---ceeeeecCCCC-CCCCCCceEEEECCCCcEEEE-Eec-------------------CeEEEEe
Q 001159 947 AQLCMWSIDKWEKL---KSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1002 (1135)
Q Consensus 947 ~~i~iwd~~~~~~~---~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~v~vwd 1002 (1135)
...++.|.+..... ....+...... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334455432111 11122222211 001134678999999987776 411 2344444
Q ss_pred cCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 1003 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 1003 ~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
..+..+..+.. + ......++|+++|+++++-..+
T Consensus 171 pdg~~~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAH--G-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEec--C-cCCCccceECCCCCEEEEccCC
Confidence 44444443322 2 2344689999999987764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.42 E-value=13 Score=43.18 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=56.4
Q ss_pred EECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC
Q 001159 867 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 946 (1135)
Q Consensus 867 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 946 (1135)
.|+-.|.....+ .|.+.|..+.... .+..|..-...-.+.++|+.+.+....+. -.+-+.|-|-...++.-+.|
T Consensus 323 vdli~g~~~~~i-nh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFI-NHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccc-cccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 455555554444 4888888888887 45555555555678888988765322222 13457788988889888888
Q ss_pred CcEEEEeCCCCce
Q 001159 947 AQLCMWSIDKWEK 959 (1135)
Q Consensus 947 ~~i~iwd~~~~~~ 959 (1135)
.....|+++..+.
T Consensus 397 nl~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQ 409 (1636)
T ss_pred ceEEEecCCcchh
Confidence 7555557766554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=92.14 E-value=4.5 Score=45.86 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=86.6
Q ss_pred CCceEEEEeecCCCEEEEEe----CCeEEEEECCCccEEEEEeCCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEEc
Q 001159 841 EESAACIALSKNDSYVMSAS----GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNV 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~----dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~ 912 (1135)
-.++..++|. ||+.++-.. +|.+++=|- +.+..|+ .|..+.|+|- ...+|| .-....|.+|-+
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqFE----hV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQFE----HVHGLSWAPPCTADTPALLA-VQHKKHVTVWQL 89 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeeccc----eeeeeeecCcccCCCCceEE-EeccceEEEEEe
Confidence 3467788886 555444332 455544332 3344443 6888999883 124555 556778999987
Q ss_pred c-----cceeeEEecCcCC-----CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEE
Q 001159 913 R-----VDEVKTKLKGHQN-----RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 982 (1135)
Q Consensus 913 ~-----~~~~~~~l~~h~~-----~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 982 (1135)
. +++.+..-..+-. --.+..|+|....|+.-.....-.+.++......-..- ..+ .+.|.+.+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---i~~----~G~IhCAC 162 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---IKT----SGLIHCAC 162 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---ccC----CceEEEEE
Confidence 6 2232222111111 12457899998888876666555566665543211111 111 15689999
Q ss_pred ECCCCcEEEEEec--CeEEEEec
Q 001159 983 FHNDQTHLLVVHE--SQISVYDS 1003 (1135)
Q Consensus 983 ~s~dg~~l~~~~d--~~v~vwd~ 1003 (1135)
|..||+.|+++-+ =.-+|||-
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecC
Confidence 9999999998544 34578987
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=2.2 Score=46.13 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=98.2
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEE-E-eCCCC----CeE-EEEEecCCCcEEEEEeCCCcEEEE-Ec
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-F-MSPPP----AAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~-~-~~h~~----~v~-~l~~sp~~~~~lasg~~dg~v~iw-d~ 912 (1135)
...+..+-..|||+.+.+-+..++.|+++.+...... + ....+ .|+ ++..-. +|.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 6678889999999999988888999999876543221 1 11111 122 222233 67778889999998877 44
Q ss_pred ccc-e----eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 913 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 913 ~~~-~----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
..+ . .++.++-...++..+.--.+.+-+++-+..|++..+.....+.+-. .... .....+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---~~~~------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---ERAY------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh---hhhh------cCcceeeeCccc
Confidence 322 1 2222332234454444334456778888889988876555442211 1111 345689999999
Q ss_pred cEEEEEecCeEEEEec
Q 001159 988 THLLVVHESQISVYDS 1003 (1135)
Q Consensus 988 ~~l~~~~d~~v~vwd~ 1003 (1135)
.++++-..+.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999988
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.83 E-value=11 Score=45.03 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=76.5
Q ss_pred ceEEEEEcC--CCCeEEEEeCCCeEEEEEeCC-------C----------CceeeeeEeecccCCEEEEEEe--cCCCeE
Q 001159 410 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQL 468 (1135)
Q Consensus 410 ~V~~v~~sp--d~~~las~~~dg~i~iwd~~~-------~----------~~~~~~~~l~~h~~~v~~v~~s--~d~~~~ 468 (1135)
.|+.+...- +...|+.|..||.|.+|.+++ . ..+++...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 566899999999999997631 0 0112222332 34478999998 5555
Q ss_pred EEEEEcCCCcEEEEEcCCC--eeee-eecCCCCCeeEEEeeccCC---cc-EEEEEEcCCeEEEEeC
Q 001159 469 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~i~~~~~~~---~~-~l~s~s~dg~i~iwd~ 528 (1135)
+||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765432 2111 1112566799999987652 22 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=91.83 E-value=18 Score=46.78 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|-..++.|.-+|+|.+ += -.|+.++.||..... |... -......++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lR--lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LR--LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EE--eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 4445666777777764 32 246788888876553 2210 012344566666666777666
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC------ee--eeeecCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~--~~~~~~h 496 (1135)
.++. .+-|+..+.... ..-..|.+...+++|.- .+.++.+..++.+|++... ++ ...+.+.
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 133555443211 12235778888899983 4677777778899998753 11 1233344
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
.....+|.+++ ..|+.+..+|.++.=++...
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~~ 518 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPAA 518 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEecccccc
Confidence 44666777754 46888999999887776543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=91.60 E-value=23 Score=38.38 Aligned_cols=209 Identities=10% Similarity=-0.041 Sum_probs=102.5
Q ss_pred CCceEEEEeecCCCEEEEEeCCe--EEEEECCCccE---------------EEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 001159 841 EESAACIALSKNDSYVMSASGGK--VSLFNMMTFKV---------------MTMFMSPPPAATFLAFHPQDNNIIAIGME 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~--i~vwd~~~~~~---------------~~~~~~h~~~v~~l~~sp~~~~~lasg~~ 903 (1135)
...|+++.+.+..+.|++-+++. ++++++..... ....-+|......+++.......++.+..
T Consensus 42 ~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~ 121 (302)
T smart00036 42 RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVAL 121 (302)
T ss_pred cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEc
Confidence 77899999999999888887655 99999854331 01122344444444444312223334445
Q ss_pred CCcEEEEEcccc----eeeEEe---c-CcCCCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCC--CceeceeeeecCCCC
Q 001159 904 DSSVQIYNVRVD----EVKTKL---K-GHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGR 971 (1135)
Q Consensus 904 dg~v~iwd~~~~----~~~~~l---~-~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~--~~~~~~~~~~~~~~~ 971 (1135)
..+|.++..... ...+.+ . .-..++..+..+++ ...+..|+..+-..+.++.. ..... ..+......
T Consensus 122 ~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d-~sl~~~~~~ 200 (302)
T smart00036 122 QSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED-LSLPFLSEE 200 (302)
T ss_pred CCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc-ccccccccc
Confidence 566777654321 111111 0 01123444443433 34566665532344555432 11000 000000000
Q ss_pred CCCCCCceEEEECCCCcEEEEEecCeEEEEecCC-ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 972 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 972 ~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
. .....++..-+++.+| .+.+....+-|..| ...+..... -.....++++.. .+|++-. +..|.|+++.++
T Consensus 201 ~--~~~p~~i~~l~~~e~L-lc~~~~~v~Vn~~G~~~~r~~~l~--w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 T--SLKPISVVQVPRDEFL-LCYDEFGVFVNLYGKRRSRNPILH--WEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred c--ccCceEEEEECCCeEE-EEECcEEEEEeCCCCccccceEEE--cCCcccEEEEEC--CEEEEEc-CCcEEEEECCCC
Confidence 0 0022334334444444 44455555566655 222211000 034456777663 5666554 566999999999
Q ss_pred eeeeeeCC
Q 001159 1051 RFRCRIGP 1058 (1135)
Q Consensus 1051 ~~~~~~~~ 1058 (1135)
+++.++..
T Consensus 273 ~l~q~i~~ 280 (302)
T smart00036 273 ELLQELAD 280 (302)
T ss_pred ceEEEEec
Confidence 98887763
|
Unpublished observations. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=14 Score=43.27 Aligned_cols=185 Identities=9% Similarity=0.007 Sum_probs=92.3
Q ss_pred CCcEEEEEeCCC-----cEEEEEcccceee--EEecCcCCCeEEEEEcCCCCeEEEEcCC--CcEEEEeCCCCceeceee
Q 001159 894 DNNIIAIGMEDS-----SVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD--AQLCMWSIDKWEKLKSRF 964 (1135)
Q Consensus 894 ~~~~lasg~~dg-----~v~iwd~~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D--~~i~iwd~~~~~~~~~~~ 964 (1135)
++.++++|+.++ .+..||..+++-. ..+.........+ .-+++..+.||.+ ..+..||..+++-. .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~---~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWV---N 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEE---E
Confidence 556777787643 5777887765422 2222111112222 2477888888764 35777887654311 1
Q ss_pred eecCCCCCCCCCCceEEEECCCCcEEEEE-ec---CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001159 965 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1040 (1135)
Q Consensus 965 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d---~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg 1040 (1135)
+..... . .....+..-+|+..+.| .+ ..+..||.....-....+... .. -...+..-+|++.+.|+
T Consensus 346 ~~~l~~-~----r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r-~~~~~~~~~~~IYv~GG--- 415 (480)
T PHA02790 346 MPSLLK-P----RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PH-YKSCALVFGRRLFLVGR--- 415 (480)
T ss_pred CCCCCC-C----CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-cc-ccceEEEECCEEEEECC---
Confidence 111110 0 01112223456666664 22 457788884333332222110 11 11223346777777774
Q ss_pred eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC-----CcEEEEecCCCc
Q 001159 1041 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAE 1104 (1135)
Q Consensus 1041 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~v~~W~~~~~~ 1104 (1135)
.+.+||.++++-...-. .+. .. ...-++.. ++++.+.||.+ .++..||..+.+
T Consensus 416 ~~e~ydp~~~~W~~~~~----m~~---~r-~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDD----PIY---PR-DNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCC----CCC---Cc-cccEEEEE---CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57889988765542211 111 11 11112222 56788888865 357788887655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.36 E-value=21 Score=42.01 Aligned_cols=217 Identities=10% Similarity=0.109 Sum_probs=104.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
+.+-+|..+|....=++ +..-.|+|+++. |..+.+ ++-.|. .+-.+.|+.+..+| +.
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI-~v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELI-CV 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEE-EE
Confidence 35556666664321122 233468888875 444332 112233 78899999776655 55
Q ss_pred eCCCeEEEEEeCCCCceeee-eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE-EEcCCCeeeeeecC---CCCCee
Q 001159 427 FSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV-WDVVAGRKQYTFEG---HEAPVY 501 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~---h~~~v~ 501 (1135)
..+|++++|++-... +... .........|..+.|..+|= .+.+. +|.+.+ -+.... .++++.. ..-+-.
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~-~~~~~~diP~~~~~~~ 174 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP-KLRKMPDIPYNELPKS 174 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc-hhhhCCCCCCccCCCc
Confidence 699999999987532 1110 01122233466666666653 33333 333433 332221 2222221 111111
Q ss_pred EEE-eeccCCccEEEEEE-cCCeEEEEeCcCCC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 502 SVC-PHHKESIQFIFSTA-IDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 502 ~i~-~~~~~~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
|-. +.|......++-.. ..+ ..++-.+... ....+......+..+..||+.++|+.-.. .|.|.+-+....+
T Consensus 175 ~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 175 CWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQ 249 (829)
T ss_pred ceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhh
Confidence 111 11111101111111 000 0111111111 11122233457788999999999987653 7788888887777
Q ss_pred EEEEeecccCCceeEEEec
Q 001159 579 IKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s 597 (1135)
....+.......-..++|.
T Consensus 250 ~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 250 ILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred hhhccCCCCCCchHhceee
Confidence 7776664333222234444
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.15 Score=59.34 Aligned_cols=199 Identities=11% Similarity=0.144 Sum_probs=111.5
Q ss_pred CCceEEEEeec-CCCEEEEEe-CCeEEEEECC--CccEEEEEe-----CCCCC---eEEEEEecCCCcEEEEEeCCCcEE
Q 001159 841 EESAACIALSK-NDSYVMSAS-GGKVSLFNMM--TFKVMTMFM-----SPPPA---ATFLAFHPQDNNIIAIGMEDSSVQ 908 (1135)
Q Consensus 841 ~~~i~~l~~s~-dg~~la~~~-dg~i~vwd~~--~~~~~~~~~-----~h~~~---v~~l~~sp~~~~~lasg~~dg~v~ 908 (1135)
.+.+..+.|.. +-..++ . -|.+.|||+. .|+....+. ..... |..+-|-+ ..-++..+..+++|+
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCcee
Confidence 45555566543 111111 2 2678888875 343332221 12222 44444445 456777788889999
Q ss_pred EEEcccceeeEEecCcCCCeEEEE-----------EcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCC
Q 001159 909 IYNVRVDEVKTKLKGHQNRITGLA-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 977 (1135)
Q Consensus 909 iwd~~~~~~~~~l~~h~~~i~~l~-----------~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1135)
+..+++... ..+++|+..++.++ .||||+.+|+++.||.+++|.+.-......+++..-..|.. .+
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p 285 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP 285 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence 887765432 44667877766554 58999999999999999999876544444445544444432 11
Q ss_pred ceEEEECCC-------C--cEEEEE--ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCC------------EE
Q 001159 978 ETKVQFHND-------Q--THLLVV--HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------LV 1033 (1135)
Q Consensus 978 v~~~~~s~d-------g--~~l~~~--~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~------------~l 1033 (1135)
-.|..|+.. + .+++++ -+..+++|.- ..+|+..+. ...|..+. -+||+ .+
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHH
Confidence 122223322 1 233343 2567888887 666653322 22344444 33343 23
Q ss_pred EEEeCCCeEEEEECCCce
Q 001159 1034 YAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1034 ~~~~~dg~I~vwd~~~~~ 1051 (1135)
+.-+-|+.|.+|.-..-.
T Consensus 360 v~r~v~~~i~~~qn~~a~ 377 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNRKAQ 377 (1283)
T ss_pred HHhhhHHHHHHhhcchhh
Confidence 445668888888766533
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.17 E-value=18 Score=38.85 Aligned_cols=189 Identities=13% Similarity=0.118 Sum_probs=100.7
Q ss_pred eEEEEeecCCCEEEE--Ee-C----------CeEEEEECCCccEEEEEeCC------CCCeEEEEEecCCC----cEEEE
Q 001159 844 AACIALSKNDSYVMS--AS-G----------GKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDN----NIIAI 900 (1135)
Q Consensus 844 i~~l~~s~dg~~la~--~~-d----------g~i~vwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~----~~las 900 (1135)
|..+...+++++-+. |. + -+|.+||+.+.+.++++.-+ .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665443 21 1 26899999999998887532 34577888876222 23433
Q ss_pred Ee-CCCcEEEEEcccceeeEEecCcC-------------------CCeEEEEEcC---CCCeEEEEcCCCcEEEEeCCCC
Q 001159 901 GM-EDSSVQIYNVRVDEVKTKLKGHQ-------------------NRITGLAFSP---TLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 901 g~-~dg~v~iwd~~~~~~~~~l~~h~-------------------~~i~~l~~s~---d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
+. ..+-|.++|+.+++.-+.+..+. +.+.+++.+| |+++|.-....+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 34579999999887655443221 2356666655 566666554333 234444321
Q ss_pred ceece-----e----eeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCC----ceeeccCCCCCCCCCEEE
Q 001159 958 EKLKS-----R----FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISS 1023 (1135)
Q Consensus 958 ~~~~~-----~----~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~----~~~~~~~~~~~h~~~i~~ 1023 (1135)
-.... . .++.. |... .....++++++|.++++ ...+.|..|+..+ +....+......-..+.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 10000 0 00000 1100 23457888999988888 5889999999944 122222222111346688
Q ss_pred EEEee--CCCEEEEE
Q 001159 1024 AIYSC--DGLLVYAG 1036 (1135)
Q Consensus 1024 ~~~s~--d~~~l~~~ 1036 (1135)
+++.+ +|.+.+..
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 77765554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.84 E-value=8.5 Score=42.63 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=91.6
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCC------ccEEEEEEcCCeEEEEeCcCCC
Q 001159 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES------IQFIFSTAIDGKIKAWLYDYLG 532 (1135)
Q Consensus 459 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~------~~~l~s~s~dg~i~iwd~~~~~ 532 (1135)
+-...+...+++..|+....++-.|++.|+.+-.+..|..- -+.|.|... .+.| .|-.+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccC
Confidence 33333444446667888888999999999999999877765 455555431 1334 44455555556666544
Q ss_pred ceeEecCCCCcEEEEEEc----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC
Q 001159 533 SRVDYDAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 608 (1135)
............+.-.|+ ...-++++++. .|-|++||--.-.....+.+..+ .|..+..+.+|+++++.+.
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK 623 (776)
T ss_pred CceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec
Confidence 332222122222222222 23447888775 66799999544333344555444 7888999999999888765
Q ss_pred CCeEEEEECC
Q 001159 609 EFQIKFWDMD 618 (1135)
Q Consensus 609 dg~i~iwd~~ 618 (1135)
..+.+-|+.
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 466666654
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.61 E-value=7.5 Score=42.42 Aligned_cols=154 Identities=9% Similarity=0.071 Sum_probs=92.9
Q ss_pred CccEEEEEeCCC------CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eeeEEecCcCCCeEEEEEcCCCCeEE
Q 001159 871 TFKVMTMFMSPP------PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNRITGLAFSPTLNALV 941 (1135)
Q Consensus 871 ~~~~~~~~~~h~------~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~i~~l~~s~d~~~l~ 941 (1135)
+|...+.+..|. ..-+.+-|.. .++.| .+...|.+.=|.+..- -++..-....++|.++.||+|.+.||
T Consensus 5 sGalyhelihhPslfcnipesngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilA 82 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILA 82 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEE
Confidence 444545554343 2345566654 33333 3445556666665421 12222223467999999999999999
Q ss_pred EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec--CCceeeccCCCCCCCC
Q 001159 942 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPA 1019 (1135)
Q Consensus 942 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~ 1019 (1135)
.--.|.+|.+.+....+.... ....+......+...+|+.. .-+|.-.+..+.+|.. ..+.++.. ..|..
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~----~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV---ks~~~ 154 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLE----YTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV---KSHNL 154 (657)
T ss_pred EEecCceEEEEecCCCchhhH----HHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh---hhccc
Confidence 999999999999855432111 11112222255888899877 5556656666778877 34444333 23467
Q ss_pred CEEEEEEeeCCCEEE
Q 001159 1020 PISSAIYSCDGLLVY 1034 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~ 1034 (1135)
.|.-.+|.++-+.+.
T Consensus 155 nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 155 NVNWYMYCPETAVIL 169 (657)
T ss_pred CccEEEEccccceEe
Confidence 788888888877643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.82 Score=31.87 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCeeEEEEecCCC--eEEEEEeccceEEEEEcCCc
Q 001159 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSR 379 (1135)
Q Consensus 347 ~~V~~v~~sp~g~--~lla~g~~dg~i~iwd~~~~ 379 (1135)
+.|.+|+|||... .|||-.-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997543 47888877899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.04 E-value=60 Score=40.55 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=104.7
Q ss_pred CCceEEEEee---c----CCCEEEEEeCCeEEEEECCCc---------------cEEEEEeC---CCCCeEEEEEecCCC
Q 001159 841 EESAACIALS---K----NDSYVMSASGGKVSLFNMMTF---------------KVMTMFMS---PPPAATFLAFHPQDN 895 (1135)
Q Consensus 841 ~~~i~~l~~s---~----dg~~la~~~dg~i~vwd~~~~---------------~~~~~~~~---h~~~v~~l~~sp~~~ 895 (1135)
..+|..++|+ . ..++|++-....+.|+...-. ..+..+.. -..+...++|.|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 7788899998 2 235777777888888872211 22333332 223577899999888
Q ss_pred cEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCC
Q 001159 896 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 975 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
..||+.+..|...||++...... +. .... +.....|.| +.|.+.-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc------------------
Confidence 89999999999999999211110 11 1111 111122223 2222210
Q ss_pred CCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEECCCc
Q 001159 976 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 976 ~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d--~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
..-..+.|.++...|+++....+.++|+.................|..+.-+++ +..++. +...|...++.+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 123478888888899999899999999943333221112223568899998887 333333 2367888888773
|
These proteins are found in fungi. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=34 Score=37.68 Aligned_cols=152 Identities=7% Similarity=-0.057 Sum_probs=82.6
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-e-eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-R-VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.+.+.++.+.+++ . ++..+..|.+..= .+.... - .........++++.+.++++.++++. .+.+.+=..
T Consensus 172 ~g~~~~i~~~~~g--~-~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG--K-YVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC--e-EEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 4567788877642 4 4455555655421 122222 1 12223445788999999998877763 444443223
Q ss_pred CCCeEEEEeecc---cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-CCCcceEEEcCCCCEEEEE
Q 001159 575 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 650 (1135)
..|..-...... ....+..+.+.+++.. +.++.+|.+. ...+.++.......... ....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 1124677888887765 4455677665 45555655544432111 12466777777666655 5
Q ss_pred ECCCcEEEEE
Q 001159 651 TSDNGIKILA 660 (1135)
Q Consensus 651 ~~dg~i~iwd 660 (1135)
+..|.|..|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677877765
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.77 E-value=3.9 Score=50.84 Aligned_cols=154 Identities=14% Similarity=0.208 Sum_probs=90.1
Q ss_pred eEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE--------cCCCC
Q 001159 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------GPDGL 421 (1135)
Q Consensus 350 ~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------spd~~ 421 (1135)
+.+-+-|.=.+..+| .|+.+.+|+++++..... +.+-...|..|.. -|.=+
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~Iq 140 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPEIQ 140 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhhhh
Confidence 334444433334554 488999999998655432 3344455555553 33334
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeee------eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC----CC---e
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG---R 488 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~------~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~----~~---~ 488 (1135)
++.+...--.|.|+-+.-.+..... ..+......|.|+....+|+ .+++ |.|| .+|.+. +| +
T Consensus 141 hlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg--~lyEl~Yq~~~gWf~~ 215 (1311)
T KOG1900|consen 141 HLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG--NLYELVYQAEDGWFGS 215 (1311)
T ss_pred eeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC--CEEEEEEeccCchhhc
Confidence 5555555556777655432211111 12222345689999888887 4554 4566 555442 11 1
Q ss_pred -e----------------eeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 489 -K----------------QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 489 -~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
+ +..+. .+..+|..+.+..+. ..+.+-+..|+|.+||+...
T Consensus 216 rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 216 RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 1 11223 567799999986554 78999999999999998763
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.73 E-value=35 Score=40.32 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~la 899 (1135)
...+..++|.-....+|++..+.|++|-..+..-.....-.-..+.-+.|+|.....|.
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 34455666766666777777889999998765433333334456778899984333333
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.65 E-value=31 Score=39.29 Aligned_cols=277 Identities=16% Similarity=0.105 Sum_probs=137.3
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+....+|.++.+.-.|. + -+|+.|| +..||..+++.+....- .-...|.++.-+-.|+
T Consensus 161 ll~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~- 218 (671)
T COG3292 161 LLKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR- 218 (671)
T ss_pred cccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc-
Confidence 33567899999999997 3 3466665 56678777766542100 1114455555555554
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCCC--CC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHE--AP 499 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~--~~ 499 (1135)
|.+|+.+| |.+.+..+.+....- ..--.+.|..+.=..+|. +-.|+..|-.+. ....+..... .+-|. ..
T Consensus 219 LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~ 291 (671)
T COG3292 219 LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVST 291 (671)
T ss_pred EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccc
Confidence 56677777 777766652111000 000122344433333443 455555553322 2222222221 22222 23
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC--CCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
|.++.. +.+ .-+-+++.+|.+++=+-+-..........+..+...+.+| .+..+.... ..+.+.+-+..+|
T Consensus 292 vnsL~~--D~d-GsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG 364 (671)
T COG3292 292 VNSLWL--DTD-GSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTG 364 (671)
T ss_pred ccceee--ccC-CCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCC
Confidence 444433 333 3466677676666543221111111111121222222222 111222111 1334666667778
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
..+++...-....|+..++..+ ..+-.++...-+..|+..+ +.......+. ....|..+.=.|+++ |..|+.+|.+
T Consensus 365 ~~v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glv 441 (671)
T COG3292 365 ELVRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLV 441 (671)
T ss_pred cEEEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeE
Confidence 8777766555556777778774 4566666554455677666 3333333322 224677788888887 6778888765
Q ss_pred EE
Q 001159 657 KI 658 (1135)
Q Consensus 657 ~i 658 (1135)
+.
T Consensus 442 k~ 443 (671)
T COG3292 442 KR 443 (671)
T ss_pred ec
Confidence 54
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.52 E-value=1.1 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEEccc
Q 001159 883 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 883 ~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~~ 914 (1135)
++|.++.|||..+ .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6999998899999999985
|
It contains a characteristic DLL sequence motif. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.27 E-value=18 Score=39.85 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=91.5
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCc------EEEEEccc--c--eee-----EEecCcCC--------CeEEEEEcCCCC
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D--EVK-----TKLKGHQN--------RITGLAFSPTLN 938 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~i~~l~~s~d~~ 938 (1135)
-+.+..+++.++++ .+++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678899987344 4555667777 66555543 1 111 11222222 234788888898
Q ss_pred eEEEEcCC------CcEEEEeCCCCceeceeeeecCC-------CCCCCCCCceEEEECCCCcEEEEE------ecC--e
Q 001159 939 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 997 (1135)
Q Consensus 939 ~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~--~ 997 (1135)
++++.=.+ ..|..++.+ +.......+.... .........-.++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888876 4443332222111 111222567799999999955542 132 1
Q ss_pred -------EEEEec--C--CceeeccCCC-CC-----CCCCEEEEEEeeCCCEEEEEe-----CCCeEEEEECC
Q 001159 998 -------ISVYDS--K--LECSRSWSPK-DA-----LPAPISSAIYSCDGLLVYAGF-----CDGAIGVFDAE 1048 (1135)
Q Consensus 998 -------v~vwd~--~--~~~~~~~~~~-~~-----h~~~i~~~~~s~d~~~l~~~~-----~dg~I~vwd~~ 1048 (1135)
++++.. . +.....+... +. ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 555554 2 2222222111 11 356789999999999877532 23345555544
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.17 E-value=30 Score=35.88 Aligned_cols=166 Identities=12% Similarity=0.046 Sum_probs=98.2
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
+....-.+-+..+.++.+ ++..+..+.-++|.|+.+........+ +. -.+--.++.. .
T Consensus 80 ~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~----------------ln-t~gyaygv~v--s 137 (370)
T COG5276 80 LSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGF----------------LN-TDGYAYGVYV--S 137 (370)
T ss_pred EEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceecc----------------cc-CCceEEEEEe--c
Confidence 334445667788888866 344556677899999987654332111 11 1123334444 6
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC---
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH--- 496 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h--- 496 (1135)
|++..++..|.-..+.|+.+.........+..-...-..++.| |+ +-..+..|+-+.+-|+.+..... |.+|
T Consensus 138 Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~ 212 (370)
T COG5276 138 GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWRDGGLTIVDVSNPHSPV-LIGSYNT 212 (370)
T ss_pred CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEeCCCeEEEEccCCCCCe-EEEEEec
Confidence 8888888866668889998876544333343344445677777 44 45566678889999987654322 2222
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 536 (1135)
...+.++..+++ +....-.+--+.+-|....+....
T Consensus 213 g~g~~sv~vsdn----r~y~vvy~egvlivd~s~~ssp~~ 248 (370)
T COG5276 213 GPGTYSVSVSDN----RAYLVVYDEGVLIVDVSGPSSPTV 248 (370)
T ss_pred CCceEEEEecCC----eeEEEEcccceEEEecCCCCCceE
Confidence 235677766543 334444455566667666654443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.15 E-value=9.1 Score=45.59 Aligned_cols=174 Identities=12% Similarity=0.110 Sum_probs=93.0
Q ss_pred CCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEE
Q 001159 853 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 932 (1135)
Q Consensus 853 g~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~ 932 (1135)
+.+++++..+.|.||+........ ...++..+...| .. +...|+.+..|- ..|. |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788888889999999986532211 011122222222 11 122333332221 1121 23332
Q ss_pred Ec--CCCCeEEEEcCCCcEEEEeCCCCc--------ee---ceeeeecCCCCCCCCCCceEEEEC--CCCcEEEEEe-cC
Q 001159 933 FS--PTLNALVSSGADAQLCMWSIDKWE--------KL---KSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVVH-ES 996 (1135)
Q Consensus 933 ~s--~d~~~l~s~~~D~~i~iwd~~~~~--------~~---~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~-d~ 996 (1135)
.. -+...|+.|..||.|.+|.++.-- .. ..+....+.-+......+..++++ ...++||+++ ..
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 244577777888888888653200 00 000000011111122467888988 8888999965 45
Q ss_pred eEEEEecCC-ceeeccCCCCCCCCCEEEEEEeeCC---C---EEEEEeCCCeEEEEEC
Q 001159 997 QISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDG---L---LVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 997 ~v~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~d~---~---~l~~~~~dg~I~vwd~ 1047 (1135)
.|.||-... ...........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 677776622 1111111123356788999997644 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.4 Score=30.25 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecc--ceEEEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~d--g~i~iw 374 (1135)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455788999999999988888877 776666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.82 E-value=66 Score=39.35 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCC----------ccE--E-EEE--------eCCCCCeEEEEEecC--CCcE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMT----------FKV--M-TMF--------MSPPPAATFLAFHPQ--DNNI 897 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~----------~~~--~-~~~--------~~h~~~v~~l~~sp~--~~~~ 897 (1135)
.-.|..+.++|+|++||..+...|.|..+.. ++. . +++ ..+...|..+.|+|. .+..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 6789999999999999999876666666532 111 1 111 123457899999993 2578
Q ss_pred EEEEeCCCcEEEEEcccc
Q 001159 898 IAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 898 lasg~~dg~v~iwd~~~~ 915 (1135)
|++-+.|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888999999999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.41 E-value=3.8 Score=51.02 Aligned_cols=144 Identities=12% Similarity=0.174 Sum_probs=92.8
Q ss_pred eCCCcEEEEEcccceeeEEecCcCCCeEEEEE--------cCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC--
Q 001159 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF--------SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-- 971 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~--------s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-- 971 (1135)
+.|+.+.+|+.+++.....+.+-+..|..|.. -|.=++|...+.--.|.++-+.-.+...... ....+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~--~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS--IFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc--cccccee
Confidence 46889999999998777788777777777653 3333455555555567777654333211110 00000
Q ss_pred -CCCCCCceEEEECCCCcEEEEEecCeEEEEec-----C---Cc-ee-------------eccCCC-CCCCCCEEEEEEe
Q 001159 972 -QSPLVGETKVQFHNDQTHLLVVHESQISVYDS-----K---LE-CS-------------RSWSPK-DALPAPISSAIYS 1027 (1135)
Q Consensus 972 -~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-----~---~~-~~-------------~~~~~~-~~h~~~i~~~~~s 1027 (1135)
......|.++....+|+.+.+|.||. +|.+ + ++ |. ..+... ..+..+|..++..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 00114678888899999999998884 4444 1 11 10 011111 2456799999998
Q ss_pred eCCCEEEEEeCCCeEEEEECCC
Q 001159 1028 CDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1028 ~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
..-..|.+-++.|+|.+|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999987
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.6 Score=41.23 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.8
Q ss_pred cceEEEEEcCCC------CeEEEEeCCCeEEEEEeCC
Q 001159 409 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 409 ~~V~~v~~spd~------~~las~~~dg~i~iwd~~~ 439 (1135)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 2788889999999998765
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=88.22 E-value=45 Score=36.67 Aligned_cols=68 Identities=9% Similarity=-0.036 Sum_probs=33.6
Q ss_pred cEEEEEEc-----CCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 512 QFIFSTAI-----DGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 512 ~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
.+.+.|+. ...+..||+.+.+-...-.... ......+..-+++..+.++.+......+..||+.+.+-
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 56666654 2457788877654332211111 12222223345566666664322123467889887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.90 E-value=11 Score=41.70 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=89.5
Q ss_pred CCcEEEE-EeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC--------CeEEEEcCCCcEEEEeCCC-Cceecee
Q 001159 894 DNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSIDK-WEKLKSR 963 (1135)
Q Consensus 894 ~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~--------~~l~s~~~D~~i~iwd~~~-~~~~~~~ 963 (1135)
+..+|.. |..-..++-.|++.|+.+..+.-|.+- -+.|.|+. +.|+-.|..+ |.-.|..- +..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCceeee
Confidence 5555543 445567888899999999999888775 46777753 4555555444 33333332 2222211
Q ss_pred eeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeE
Q 001159 964 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 964 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I 1042 (1135)
......+.. . .+......+.|+|+ +..|.|++||--+....+..+. .+..|..+..+.+|+++++.+ ...+
T Consensus 555 esKdY~tKn----~-Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 555 ESKDYKTKN----K-FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eehhccccc----c-ccccccccCceEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceE
Confidence 111111111 1 12222344567777 6789999999844444443333 277899999999999988654 4567
Q ss_pred EEEECC--Cceeeeee
Q 001159 1043 GVFDAE--TLRFRCRI 1056 (1135)
Q Consensus 1043 ~vwd~~--~~~~~~~~ 1056 (1135)
.+-|+. .|+...++
T Consensus 627 lL~d~~ik~g~~aGr~ 642 (776)
T COG5167 627 LLTDVPIKYGQPAGRD 642 (776)
T ss_pred EEEecccccCCccccc
Confidence 777754 34444444
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=87.82 E-value=43 Score=35.94 Aligned_cols=167 Identities=12% Similarity=0.097 Sum_probs=91.1
Q ss_pred cEEEEEcCCCeeeeeecC------CCCCeeEEEeeccCC----ccEEEEEEcCCeEEEEeCcCCCceeEecCC-------
Q 001159 478 MIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------- 540 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------- 540 (1135)
.|.+||+.+++.++++.- ..+....+.+..... +-..++=+..+-|.++|+.+++....+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677889999988776642 245677777765332 233444455578999999886654433221
Q ss_pred ------------CCcEEEEEEcC---CCCEEEEEecCCCCCCeEEEEECCC-----C---------eEEEEeecccCCce
Q 001159 541 ------------GNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESE-----G---------AIKRTYSGFRKRSL 591 (1135)
Q Consensus 541 ------------~~~i~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~---------~~~~~~~~~~~~~v 591 (1135)
...+..++.+| ++++|+..... . -.+|.+.+ . ..++.+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls---s--~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS---S--RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCC---C--CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11255666655 66666655421 1 12232221 0 011111 2211244
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCC---ceEEEEeCCCC-CCCcceEEEcC--CCCEEEEE
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNM---NMLTTVDADGG-LPASPRLRFNK--EGSLLAVT 650 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~ 650 (1135)
..++++++|..+++--..+.|..|+.... +....+..... ...+.++.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 56888999988888888999999998861 12233322222 34567788877 66554444
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.55 E-value=54 Score=36.87 Aligned_cols=198 Identities=12% Similarity=0.015 Sum_probs=106.2
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC-Ce
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV 500 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v 500 (1135)
.+..+..+|.|.-.|..++..+-..... .....+..-.+..+|+ ++.++.++.++..|..+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444467777777777777633211111 0011222223333675 77888899999999889998887765551 11
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
..-.... + ..++.++.++.+...|..++.......... ..+..-....++ .++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v~~--~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVVG--D-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcEEc--C-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 1111111 1 344455577888888877777766543322 111111111222 33333311 1 446778888888
Q ss_pred eEEEEeecccCCceeE---EEecCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 578 AIKRTYSGFRKRSLGV---VQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~---i~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
......+......-.. ...... +..++.++.++.+...+..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8877643322111000 001111 123356667788999999999998888753
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.11 E-value=32 Score=33.77 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=91.8
Q ss_pred EEEEEcCC--CcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEE
Q 001159 469 CIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 469 ~l~s~~~d--~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 546 (1135)
++.+.+.- ..|++||+.+|+.+..-.-....+..=-..-.++ .+-.-.=.+|.-..+|.++.++.-.+.-.+. =..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 56666543 4799999999987764332111111000000111 1222233577788888888777665443332 122
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee----cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS----GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~----~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
...|++.|+.+ ++..+++.-|+.+.....+.. +..-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus 136 --Lt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 --LTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred --eecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 23556656654 346678888887655444333 2211123334443 454444444455666677778877
Q ss_pred EEEEeCC----------CCCCCcceEEEcCCCC-EEEEE
Q 001159 623 LTTVDAD----------GGLPASPRLRFNKEGS-LLAVT 650 (1135)
Q Consensus 623 ~~~~~~~----------~~~~~v~~~~~~~~~~-~l~~~ 650 (1135)
+..+... .+....+.+++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7665422 1223467899999774 44444
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.10 E-value=31 Score=37.89 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=62.6
Q ss_pred ceEEEEeecCCCEEEEEe-C------CeEEEEECCCccEEEEEe---------------CCCCCeEEEEEecCCCcEEEE
Q 001159 843 SAACIALSKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFM---------------SPPPAATFLAFHPQDNNIIAI 900 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~---------------~h~~~v~~l~~sp~~~~~las 900 (1135)
...++++.++|.++++.- + ..|+.++.. |+.+..+. ..+...-+|+++| +|+.|.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 556788888888887765 5 678888876 66555441 1234578999999 7886666
Q ss_pred EeCC-----C--c-------EEEEEcc--c-ceee----EEecC-----cCCCeEEEEEcCCCCeEEE
Q 001159 901 GMED-----S--S-------VQIYNVR--V-DEVK----TKLKG-----HQNRITGLAFSPTLNALVS 942 (1135)
Q Consensus 901 g~~d-----g--~-------v~iwd~~--~-~~~~----~~l~~-----h~~~i~~l~~s~d~~~l~s 942 (1135)
+.+. + . ++|+... + ++.. ..+.. ....|+.+++-+++++|+-
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5432 2 1 5555444 3 2222 22332 3567899999999987764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.33 E-value=45 Score=34.69 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=108.4
Q ss_pred cCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC--CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~ 530 (1135)
.+-+..+.++.+ +...+..+.-++|.|+.+......+.. -.+--.++.. .|++...+..|.-+.+.|+.+
T Consensus 86 ~~l~~Dv~vse~----yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v----sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 86 RDLFADVRVSEE----YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV----SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhheeEeccc----EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe----cCCEEEEeeccCcEEEEECCC
Confidence 345667778754 566677788899999987654332211 1233334433 337888888788888899887
Q ss_pred CCcee---EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccCCceeEEEecCCCCEEE
Q 001159 531 LGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 531 ~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
.+... ...........++.|- ++-+.+.. ++-+.+-|+..... +..... +..+.++..+++..+++
T Consensus 158 pssP~lagrya~~~~d~~~v~ISG--n~AYvA~~----d~GL~ivDVSnp~sPvli~~~n~--g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAISG--NYAYVAWR----DGGLTIVDVSNPHSPVLIGSYNT--GPGTYSVSVSDNRAYLV 229 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEec--CeEEEEEe----CCCeEEEEccCCCCCeEEEEEec--CCceEEEEecCCeeEEE
Confidence 66543 3333444445666664 44443332 45588888765433 222222 22567777777655555
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCCC--CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 605 AAGDEFQIKFWDMDNMNMLTTVDADGGL--PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
... --+.+-|..+.+....+..-... ..++.+.. .+++......+.-+.+-|+.+.
T Consensus 230 vy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 230 VYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred Ecc--cceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence 443 34667777766544444322222 12222333 4556666666666777777654
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=46 Score=39.71 Aligned_cols=194 Identities=12% Similarity=-0.007 Sum_probs=101.7
Q ss_pred CceEEEEeecCCCEEEEEe-CC-eEEEEECCCccE----EEEEeCCCCCeEEEEEecCCCcEEEEEeC--CC--cEEEEE
Q 001159 842 ESAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGME--DS--SVQIYN 911 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-dg-~i~vwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~~lasg~~--dg--~v~iwd 911 (1135)
..+.+++.|+++..+|... ++ .+.+..+..+.. ..... .....+.-.|.+ ++ ++-+... ++ .+++..
T Consensus 363 ~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 363 VPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence 3678899999999988877 44 576666533322 11111 133466677777 44 3434322 22 255554
Q ss_pred cccceeeEE-ecCcCC-CeEEEEEcCCCCeEEEEcC---CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 912 VRVDEVKTK-LKGHQN-RITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 912 ~~~~~~~~~-l~~h~~-~i~~l~~s~d~~~l~s~~~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
- +++.... .....+ .|+.+..|+||.+++.... .+.|.+=-+.....-. ..+..+..-......+..++|..+
T Consensus 440 ~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~ 517 (599)
T PRK13613 440 G-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGD 517 (599)
T ss_pred C-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCC
Confidence 3 4443211 112223 7999999999988776543 3455554443211100 111111100001135889999999
Q ss_pred CcEEEEE--ecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCC-EEEEEeCCCeE
Q 001159 987 QTHLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAI 1042 (1135)
Q Consensus 987 g~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~~~~~dg~I 1042 (1135)
+.+++.+ .++...+|.+ .+.....-.. ..-..+.+++-..+.. .|+.+..++.|
T Consensus 518 ~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~--~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 518 SQLVVLGREEGGVQQARYVQVDGSTPPASAP--AAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CEEEEEeccCCCCcceEEEecCCcCcccccc--cCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 9988854 3334445554 4433221111 1134566777777666 45553555554
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=0.12 Score=56.23 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=98.2
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
....+.+.+.-+++++.+..+..||-.. +.+.. .. . .+....+++..++..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le-~n---~-tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILE-LN---P-TGKALDMAWDKEGDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceecc-cC---C-chhHhhhhhccccchh
Confidence 4556777777788888887777775321 11110 11 2 5566678888888877
Q ss_pred EEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 7665 68999999976432111111122222378999 88999999999999999988877776666699999999999
Q ss_pred CCCCeEEEEcCCCcEEE
Q 001159 935 PTLNALVSSGADAQLCM 951 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~i 951 (1135)
+.+. .+.++.|..+.+
T Consensus 169 lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTLSV 184 (615)
T ss_pred ccce-eeecCcHHHHHH
Confidence 8874 445555554443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.03 E-value=3 Score=42.54 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=53.6
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCCceecee-ee-ecCCCC----CCCCCCceEEEECCCCcEEEEEecCeEEEEecCCc
Q 001159 933 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-FI-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006 (1135)
Q Consensus 933 ~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1006 (1135)
+..++++|++...+|.+++||+.+.+..... .+ ...... ......|..+.++.+|.-+++-.+|..+.|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999998754332 11 111100 02226788899999999988877788999998555
Q ss_pred ee
Q 001159 1007 CS 1008 (1135)
Q Consensus 1007 ~~ 1008 (1135)
+-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.25 Score=53.78 Aligned_cols=140 Identities=16% Similarity=0.263 Sum_probs=95.4
Q ss_pred eecCCCCCCccccCCC------cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecc
Q 001159 319 SFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392 (1135)
Q Consensus 319 ~~s~~g~~~~~~~~d~------~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 392 (1135)
.+-+.++.+++.+.+. ..++.+-.+..++.-..++|..+|..+++.+-..+.+.+||+.+...-.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq--------- 111 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ--------- 111 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---------
Confidence 3444455555544332 3445555555666777899999998777777888999999998643211
Q ss_pred cccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEE
Q 001159 393 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s 472 (1135)
+-.+-...-.-+.|++.+..++.+...|.+.|++..+.+... ....|...++++++.+.+. .+.
T Consensus 112 ----------LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil 175 (615)
T KOG2247|consen 112 ----------LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VIL 175 (615)
T ss_pred ----------HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eee
Confidence 001112222227899999999999999999999988765432 3334999999999999885 677
Q ss_pred EcCCCcEEEEE
Q 001159 473 CGDDKMIKVWD 483 (1135)
Q Consensus 473 ~~~d~~i~iwd 483 (1135)
++.|..+.+-.
T Consensus 176 ~dcd~~L~v~~ 186 (615)
T KOG2247|consen 176 CDCDNTLSVTT 186 (615)
T ss_pred cCcHHHHHHhh
Confidence 77777665544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.67 E-value=41 Score=33.59 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=84.7
Q ss_pred cEEEEEeCCCcEEEEEcc--cceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC---C---cEEE---EeCCC--Cceece
Q 001159 896 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---A---QLCM---WSIDK--WEKLKS 962 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~---~i~i---wd~~~--~~~~~~ 962 (1135)
..|..+.....|.+|++. ..+.+.+|.. -+.|..++++..|++|+|-=.+ . .+|+ |+... ......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667889999988 3456667764 4889999999999999986432 2 4555 33331 111111
Q ss_pred eeee----cCCCCC----------CCCCCceEEEECCCCcEEEEEecCeEEEEecCCcee--ecc---CCC---CCC--C
Q 001159 963 RFIQ----APAGRQ----------SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS--RSW---SPK---DAL--P 1018 (1135)
Q Consensus 963 ~~~~----~~~~~~----------~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~--~~~---~~~---~~h--~ 1018 (1135)
+... ...... ....++.+++--|-..-|+++.++.+.+|.+..... ..+ ... -.| .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1111 000000 011356677777877788888899999999833222 111 000 001 2
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 1019 APISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1019 ~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
.....++|.. .|+|..+ +-.++|+.+.
T Consensus 188 ~~p~~v~ic~--~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAICE--GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEEe--eEEEEec-CCEEEEEEEe
Confidence 2244455543 4777664 5567776653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=85.51 E-value=65 Score=35.75 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=15.1
Q ss_pred CCCeEEEEcCC-----CcEEEEeCCCCc
Q 001159 936 TLNALVSSGAD-----AQLCMWSIDKWE 958 (1135)
Q Consensus 936 d~~~l~s~~~D-----~~i~iwd~~~~~ 958 (1135)
++++++.||.+ ..+.++|..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56777777754 247778887644
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.35 E-value=27 Score=42.95 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=116.2
Q ss_pred EEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEE
Q 001159 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 859 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~ 859 (1135)
++..-|..+.+|+.+|.+.+|.+........... .. ++-.. ...-+ ..+|..+...+.-.++.+-
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~--------~~~~~-----~~~~~-kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT--------ETVKF-----EKEFS-KKPINKLLVCASLELLLIL 85 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc--------chhHH-----hhhhc-cchhHHHhhcchhcchhee
Confidence 3445577799999999999998765432111111 00 00000 00002 4667777777777777777
Q ss_pred eCCeEEEEECCCccEEEEEeCCCCCeEEEEEe--c-CCC--cEEEEEeCCC--cEEEEEcccceeeEEecCcCCCeEEEE
Q 001159 860 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH--P-QDN--NIIAIGMEDS--SVQIYNVRVDEVKTKLKGHQNRITGLA 932 (1135)
Q Consensus 860 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s--p-~~~--~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~i~~l~ 932 (1135)
+|+.|.++++.+.+...... +...++..+.. + ..+ .+.+....-. ....|+-..+..+..--+-...+.+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPSGT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccccc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 88999999887765521111 11111111110 0 011 1222222111 122333322222221111112222333
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCcee-ecc
Q 001159 933 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS-RSW 1011 (1135)
Q Consensus 933 ~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~-~~~ 1011 (1135)
| .+..+.++-.+....+|.-.++...........+ . ..-..+.--+++..++.+.|+...+-|..|... +..
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~-~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN-E----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeecccc-c----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 2444444433344444544443221111111110 0 122356666777777778888777778765552 111
Q ss_pred CCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeee
Q 001159 1012 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1056 (1135)
Q Consensus 1012 ~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~ 1056 (1135)
... +....++. -+.-|+++- .++.|.||+..++.++.++
T Consensus 238 l~w---s~~P~~v~--~~~PYlIa~-~~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LVW---SEVPLSVV--VESPYLIAL-LDRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eEe---cccchhhc--ccCceEEEE-ccccEEEEeccCHHHhhcc
Confidence 000 11111122 234466654 5569999999999888776
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=71 Score=36.00 Aligned_cols=21 Identities=10% Similarity=-0.217 Sum_probs=12.1
Q ss_pred CCCeEEEEeC-CCeEEEEEeCC
Q 001159 419 DGLMLGVAFS-KHIVHLYTYNP 439 (1135)
Q Consensus 419 d~~~las~~~-dg~i~iwd~~~ 439 (1135)
+++..+.++. +..+.++|+..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCC
Confidence 5555554443 45567777753
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.81 E-value=23 Score=40.37 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=39.1
Q ss_pred cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 924 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 924 h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
.-...++|+|.|||++|++--..|.|++++-.++.......+..... .........++|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCc
Confidence 34567899999999888876556999999866543211111111100 0012577899999884
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.67 E-value=3.9 Score=44.38 Aligned_cols=170 Identities=11% Similarity=0.098 Sum_probs=94.3
Q ss_pred EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-Ee-cCcCC----CeE-EEEEcCCCCeEEEEcCC
Q 001159 874 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KL-KGHQN----RIT-GLAFSPTLNALVSSGAD 946 (1135)
Q Consensus 874 ~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l-~~h~~----~i~-~l~~s~d~~~l~s~~~D 946 (1135)
.+..+......|..+-..| ||++|..-+. .++.++++.+..... ++ ....+ .|+ ++..-..|.-|..+..|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3344555667788899999 8998887665 678899887543221 11 11111 122 22223456778888999
Q ss_pred CcEEEE-eCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEE
Q 001159 947 AQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSA 1024 (1135)
Q Consensus 947 ~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~ 1024 (1135)
|.|.-| |+..+....-..++..+- ...++..+.-....+-+++ ..+|++.++..+......+... -..+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l---~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKL---APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeecccc---CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCccee
Confidence 999887 444433211111111110 0122222222222233344 4667777766632222222211 2356678
Q ss_pred EEeeCCCEEEEEeCCCeEEEEECCCcee
Q 001159 1025 IYSCDGLLVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 1025 ~~s~d~~~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
++||.+.+|++- ..|.|+++.+++..+
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999999875 567899999987543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.34 E-value=45 Score=39.46 Aligned_cols=129 Identities=9% Similarity=0.123 Sum_probs=72.5
Q ss_pred eEEEECCCCcEEEE-EecC-----eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCcee
Q 001159 979 TKVQFHNDQTHLLV-VHES-----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
..+.|-|.|..+++ +.|+ .|..+..+|-....+....+-...+..++|.-....++.+ ..+.|.+|-..+...
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 45899999999999 5333 3666666555544443222224456667777666666654 567899999877544
Q ss_pred eeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001159 1053 RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1119 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~~~~~~~~~~~ 1119 (1135)
.-... .+.|. +. -+.|+|...+.|...+.. .|-.-++.....+-....|+|||.+.
T Consensus 329 YLK~e--~~ip~------~s--~vkwhpe~~nTl~f~d~~-~I~~V~f~~k~~~~~s~~p~d~g~~~ 384 (1243)
T COG5290 329 YLKVE--RQIPG------IS--YVKWHPEEKNTLLFRDGE-RILRVFFSEKKTHHGSEYPFDNGTSY 384 (1243)
T ss_pred EEEEe--ecCCC------cc--eeeeccccCcEEEEecCC-eEEEEEeehhhhcCCcccCccCCceE
Confidence 32211 11111 12 367888765555553332 33333333222223446688888664
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=84.23 E-value=33 Score=31.28 Aligned_cols=128 Identities=7% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec----
Q 001159 776 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---- 851 (1135)
Q Consensus 776 ~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~---- 851 (1135)
|..-.|......|++++..|.|.|++.......... ....+++.+. ...|++++-.+
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~~LNi----------------n~~italaaG~l~~~ 61 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDISFLNI----------------NQEITALAAGRLKPD 61 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCcccccccc---ccCceeEEEC----------------CCceEEEEEEecCCC
Q ss_pred -CCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCC--cEEEEEeCCCcEEEEEcccceeeEEecC
Q 001159 852 -NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 852 -dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
+...|+.|+...+..||+.....+..-.-+ +.|.++.+-.-+. .-|+..+.+..|.-||.+..+...+..+
T Consensus 62 ~~~D~LliGt~t~llaYDV~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 62 DGRDCLLIGTQTSLLAYDVENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred CCcCEEEEeccceEEEEEcccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.22 E-value=17 Score=46.31 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=42.7
Q ss_pred CceEEEECCCCcEEEEEecCeEEEEecCCcee-eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCcee
Q 001159 977 GETKVQFHNDQTHLLVVHESQISVYDSKLECS-RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~-~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
++.+..+...+..+.....+.+.+|+...... ..+... ....+.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN--------GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc--------cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 34444455555555555556666666633322 222222 111188999999999999999999999865
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=83.74 E-value=1e+02 Score=36.50 Aligned_cols=387 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCC-------CcceEEEEEcC-----
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA-------AISVNRCVWGP----- 418 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~sp----- 418 (1135)
++..|.|+ .++.+..+|.+.|+.++. ...... ...+ ...|.+++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCeEEEEeCCCe------EEEEEeCCCCceeeeeEeec------ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 419 DGLMLGVAFSKHI------VHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 419 d~~~las~~~dg~------i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+...+|.=-.+.. .+-|+...+-.......-.. +..+..-+..-.... .++.++ ++.+.+-+...
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~-~~~i~y~~~~~ 185 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGG-ENIIIYKNHLI 185 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEE-SSEEEEEE---
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEEC-CEEEEEecccc
Q ss_pred C---eeeeeecCC----CCCeeEEEe-----eccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCC-CCcEEEEEEcC
Q 001159 487 G---RKQYTFEGH----EAPVYSVCP-----HHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAP-GNWCTMMAYSA 551 (1135)
Q Consensus 487 ~---~~~~~~~~h----~~~v~~i~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~-~~~i~~~~~s~ 551 (1135)
. .....+... ..-+.+... ....++..++.+..+|.+....+.... .....-+. .....++++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~ 265 (504)
T PF10433_consen 186 GSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK 265 (504)
T ss_dssp ---TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES
T ss_pred cccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc
Q ss_pred CC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec----CCCC------EEEEEe---CCCeEEEEEC
Q 001159 552 DG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD----TTRN------RFLAAG---DEFQIKFWDM 617 (1135)
Q Consensus 552 ~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s----~~~~------~l~~~~---~dg~i~iwd~ 617 (1135)
+| .+++.|+. .+|+.+..|....-+.+..+..-. +|..+++. .... .+++++ .+|.+++..-
T Consensus 266 ~g~d~lf~gs~--~gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 266 NGGDYLFVGSE--FGDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp TT--EEEEEES--SS-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCCEEEEEEEe--cCCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCce--EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc---CCCchh----hhhccccccccccCCCCCCCC
Q 001159 618 DNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN---SDGVRL----LRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 618 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
.-+-. ......-.+...++.+....+....+..+....-+++.+ +...+. ...+......+........
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~-- 419 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDG-- 419 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTT--
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCC--
Q ss_pred CCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCC
Q 001159 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 768 (1135)
T Consensus 420 -------------------------------------------------------------------------------- 419 (504)
T PF10433_consen 420 -------------------------------------------------------------------------------- 419 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred cccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEE
Q 001159 769 SIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~ 848 (1135)
.-+-+++.+=.++..........|... .+..-..|
T Consensus 420 --------~ivQVt~~~i~l~~~~~~~~~~~w~~~-------------------------------------~~~~I~~a 454 (504)
T PF10433_consen 420 --------RIVQVTPKGIRLIDLEDGKLTQEWKPP-------------------------------------AGSIIVAA 454 (504)
T ss_dssp --------EEEEEESSEEEEEESSSTSEEEEEE-T-------------------------------------TS---SEE
T ss_pred --------eEEEEecCeEEEEECCCCeEEEEEeCC-------------------------------------CCCeEEEE
Q ss_pred eecCCCEEEEEeCCeEEEEECCCccEEEEEeCC-----CCCeEEEEEec
Q 001159 849 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP-----PPAATFLAFHP 892 (1135)
Q Consensus 849 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~sp 892 (1135)
...++..+++.+++.+.++.+............ ...|.|+...|
T Consensus 455 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
|
... |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=83.51 E-value=7.1 Score=39.80 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=51.0
Q ss_pred EecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhcc-------CCCcceEEEEEcCCCCeEEEE
Q 001159 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-------DAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 354 ~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~v~~spd~~~las~ 426 (1135)
+..++.+ |.+-+.+|.+++||+.+++.+... .. ...++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~S-----------i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VS-----------IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-cc-----------HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4556764 566788999999999998876531 11 111222 466789999999998877765
Q ss_pred eCCCeEEEEEeCCC
Q 001159 427 FSKHIVHLYTYNPT 440 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~ 440 (1135)
+ +|..+.|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 4 577888887653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=82.48 E-value=1.8e+02 Score=38.44 Aligned_cols=135 Identities=8% Similarity=0.053 Sum_probs=75.8
Q ss_pred EEeCCCcEEEEEcccce-------eeEE---------ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceecee
Q 001159 900 IGMEDSSVQIYNVRVDE-------VKTK---------LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 963 (1135)
Q Consensus 900 sg~~dg~v~iwd~~~~~-------~~~~---------l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~ 963 (1135)
.|-.||.|.-||-.+.. -+.. +--..+.|..|.+++...-++-+. +..+.+=-..+ +.....
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r~-~~e~G~ 695 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRRN-KVELGD 695 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-CcccccccccC-CCCCCc
Confidence 35568999999865321 0000 112346677777777655554432 22222111111 000011
Q ss_pred eeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEE
Q 001159 964 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1043 (1135)
Q Consensus 964 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~ 1043 (1135)
.+..+. ...|+.++.-.+.++++....|.+..+...+.. ..+ ...+-.+.|..++......+.| ...+|.++
T Consensus 696 ~l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p-~~l-~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf 767 (1774)
T PF11725_consen 696 ALEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQKPGRP-VPL-SRPGLSGEIKDLALDEKQNLYA-LTSTGELF 767 (1774)
T ss_pred cccCCC-----cCcceeEEEEcCCceEEeccCCccccccCCCCC-ccC-CCCCCCcchhheeeccccceeE-ecCCCcee
Confidence 122222 156889999999888888888999888853332 222 2234478999999998877555 45677665
Q ss_pred E
Q 001159 1044 V 1044 (1135)
Q Consensus 1044 v 1044 (1135)
-
T Consensus 768 ~ 768 (1774)
T PF11725_consen 768 R 768 (1774)
T ss_pred e
Confidence 4
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=82.01 E-value=1e+02 Score=36.06 Aligned_cols=190 Identities=14% Similarity=0.182 Sum_probs=89.1
Q ss_pred EEEEEE---cCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc-
Q 001159 468 LCIVTC---GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW- 543 (1135)
Q Consensus 468 ~~l~s~---~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~- 543 (1135)
+++++. .......+.| .+|.....+.........+.. ..+|.+++... +.+..+|+. ++...........
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~--l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQ--LPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE---TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeE--cCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 355555 3445666667 556655444322111111222 34556665444 778888875 3444444433322
Q ss_pred --EEEEEEcCCCCEEEEEec---------CCCCCCeEEEEECCCCeEEEEeeccc------C------------------
Q 001159 544 --CTMMAYSADGTRLFSCGT---------SKEGESHLVEWNESEGAIKRTYSGFR------K------------------ 588 (1135)
Q Consensus 544 --i~~~~~s~~~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~------~------------------ 588 (1135)
-..+...|+|++|+.+.. ...-...|..+| .+|+.+..+.... .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 345677899999887762 111123466777 7787776643110 0
Q ss_pred --CceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCc-ce--EEE---------------c-CCCCE
Q 001159 589 --RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPAS-PR--LRF---------------N-KEGSL 646 (1135)
Q Consensus 589 --~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~--~~~---------------~-~~~~~ 646 (1135)
-.++++.+.+....|+..+ .-..|...|..+++....+..+.....- .. +.. . .-|+.
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 1367899988545555544 4558889998899988888655322110 11 111 0 12455
Q ss_pred EEEEECCC---cEEEEEcCCC
Q 001159 647 LAVTTSDN---GIKILANSDG 664 (1135)
Q Consensus 647 l~~~~~dg---~i~iwd~~~~ 664 (1135)
-+.-..+| .|.+||-..+
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNG 369 (477)
T ss_dssp EEEE-TTS---SEEEEE--TT
T ss_pred ceEEcCCCCeEEEEEEECCCC
Confidence 56666777 8889886554
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.00 E-value=27 Score=44.42 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+...+.+..+......+.... .+.+..|+.........+..... ..+.++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCC
Confidence 344555555555555444432 44566666544444343433222 1178899999999999999999999
Q ss_pred Cce
Q 001159 620 MNM 622 (1135)
Q Consensus 620 ~~~ 622 (1135)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.91 E-value=97 Score=35.04 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred CEEEEEeCCeEEEEECCCccEEEE-EeCCCC---------------------CeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 854 SYVMSASGGKVSLFNMMTFKVMTM-FMSPPP---------------------AATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 854 ~~la~~~dg~i~vwd~~~~~~~~~-~~~h~~---------------------~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
+-++.+.+..+..||-+..-+... +++..+ .|..+..++ .|..+|-.+.+|.+.++=
T Consensus 53 rN~~~~~gD~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~-~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 53 RNVVFGLGDELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSP-TGSHVALIGIKGLMVMEL 131 (741)
T ss_pred cchhcccCCEEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecC-CCceEEEecCCeeEEEEc
Q ss_pred cccceeeEEecCcCCCeEE--------------------EEEcCCC---CeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 912 VRVDEVKTKLKGHQNRITG--------------------LAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 912 ~~~~~~~~~l~~h~~~i~~--------------------l~~s~d~---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
....-.-..+......|+| ++|+|+. ..|..-+.|.+|++||+.....+ ......
T Consensus 132 p~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel--ylqpge 209 (741)
T KOG4460|consen 132 PKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL--YLQPGE 209 (741)
T ss_pred hhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh--hccCCC
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE--EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCE----EEEEeCCC--
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL----VYAGFCDG-- 1040 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~----l~~~~~dg-- 1040 (1135)
.+... ..+.-+.|-....++.. ..-+.|.=|..-++-...+... ....-.-.-++...+ +..-.++|
T Consensus 210 pgRS~--tn~Si~sFGe~~~~~l~~~~a~~~V~~~Esv~Nd~~~l~~S---~ktL~~~nSs~k~E~iE~p~~~L~EnG~~ 284 (741)
T KOG4460|consen 210 PGRSP--TNVSILSFGEEESLVLNKGRAYTAVLGEEAVANDFGPLAAS---PKTLFGQNSSGKDEVVEYPLYILYENGET 284 (741)
T ss_pred cCCCC--ccceeeccCCcceeeeccCcccccccCchhhccCccccccC---ccceeeecccccceeEecceeeeeccCcc
Q ss_pred -eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec-CCCCCEEEEEecCCcEEE
Q 001159 1041 -AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH-PSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1041 -~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~v~~ 1097 (1135)
.|+|--......+..+++..+.....+..-...-|..+. |+-...|+++-..|.++.
T Consensus 285 ~NIyi~~~~~~~~~~~LQGPl~~~p~aeDnyg~~~CaL~~lpS~p~ilViA~S~G~L~h 343 (741)
T KOG4460|consen 285 FNIYISLLHSPGNIGKLQGPLPMHPAAEDNYGYDACALLCLPSVPNILVIATSSGMLYH 343 (741)
T ss_pred eeEEEEEccCcchhhhhcCCccCCcccccccchhhheeEeecCCCCeEEEEecCCceee
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=81.68 E-value=16 Score=42.46 Aligned_cols=131 Identities=14% Similarity=0.006 Sum_probs=72.2
Q ss_pred EEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe--------------CCCeEEEEE
Q 001159 981 VQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--------------CDGAIGVFD 1046 (1135)
Q Consensus 981 ~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~--------------~dg~I~vwd 1046 (1135)
+.+-++|.+++... ..+..+|..|+.+..+....+...-=..+..-|+|.+|+.+. .| .|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEEC
Confidence 56678888776644 788888887776655443221000012466778999988877 23 367777
Q ss_pred CCCceeeeeeCCceeccc-c----------------ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001159 1047 AETLRFRCRIGPSAYIPT-Y----------------AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~ 1109 (1135)
.+|+.+..+.....+.. . ......+.=++.+.+.++.+|+|+=.-..|...|..+++-.|-+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 88998888775554411 1 11122334478888866667777665668999998899988888
Q ss_pred CCCCC
Q 001159 1110 TPSQD 1114 (1135)
Q Consensus 1110 ~~~~~ 1114 (1135)
.++..
T Consensus 310 g~~~~ 314 (477)
T PF05935_consen 310 GPPGG 314 (477)
T ss_dssp S-STT
T ss_pred CCCCC
Confidence 77653
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=81.00 E-value=7.6 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.0
Q ss_pred cCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
|++++|.++. +++|.++|..+++.+..+.. ...-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777776 68999999999988888765 233334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=80.45 E-value=1.2e+02 Score=35.30 Aligned_cols=237 Identities=5% Similarity=-0.093 Sum_probs=0.0
Q ss_pred CCCeEEEEeCC-------CeEEEEEeCCCCceeeeeEe-ecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcC
Q 001159 419 DGLMLGVAFSK-------HIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVV 485 (1135)
Q Consensus 419 d~~~las~~~d-------g~i~iwd~~~~~~~~~~~~l-~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~ 485 (1135)
++..++.|+.+ ..+.+||+.+.+-......- ........+.+..-++. +++.|+.+ ..+.++|+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~--lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST--LYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE--EEEECCCCCCCCCccEEEEECC
Q ss_pred CCeeeeeecC---CCCCeeEEEeeccCCccEEEEEEcCCe-----EEEEeCcCCCceeEec---CCCCcEEEEEEcCCCC
Q 001159 486 AGRKQYTFEG---HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~~~~~~~~---h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~ 554 (1135)
+.+-...-.. ....-...+..-.+ .+.+.|+.++. +..||+.+.+-...-. .........+..-+++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~--~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk 330 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEE--NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK 330 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECC--EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeec---ccCCceeEEEecCCCCEEEEEeCCC--------------eEEEEEC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSG---FRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDM 617 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~i~~s~~~~~l~~~~~dg--------------~i~iwd~ 617 (1135)
..+.++.++.....+.+||+.+.+-...-.. ... .....+..-+++.++.|+... .+.++|+
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE-RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC-cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc
Q ss_pred CCCceEEEEeCCCCCCCcc--------eEEEcCCCCEEEEEECCCcEEEEE
Q 001159 618 DNMNMLTTVDADGGLPASP--------RLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.+.+-...-.......... ......+..+++.|+.+..=..+|
T Consensus 410 ~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~ 460 (470)
T PLN02193 410 ETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFD 460 (470)
T ss_pred CcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcccccc
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=80.39 E-value=16 Score=41.98 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.3
Q ss_pred CEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1020 PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
.|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 499999999889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.20 E-value=1.2e+02 Score=34.85 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCC
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~ 420 (1135)
...+.|+|.|||+ +|++--..|.|++++..++...... .++........+....|+++|+-
T Consensus 30 ~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~------------~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVF------------TLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeee------------cCCceeccCCCCceeeEEECCCc
Confidence 4789999999997 7776544699999986554321100 00100011135678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1135 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-08 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 8e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 4e-05 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 5e-05 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 6e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1135 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.78 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.74 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.69 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.63 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.63 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.6 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.57 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.55 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.54 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.54 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.52 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.5 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.5 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.5 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.48 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.41 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.38 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.33 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.32 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.32 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.29 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.25 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.24 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.23 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.22 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.21 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.21 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.2 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.15 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.15 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.13 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.12 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.11 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.11 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.05 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.02 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.02 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.0 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.96 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.95 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.94 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.91 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.87 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.86 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.85 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.81 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.76 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.75 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.73 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.69 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.67 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.66 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.65 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.63 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.62 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.61 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.61 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.59 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.58 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.57 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.57 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.56 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.54 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.52 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.49 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.48 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.47 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.42 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.37 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.36 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.33 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.29 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.27 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.24 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.24 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.23 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.23 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.2 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.19 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.1 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.09 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.09 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.06 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.02 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.97 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.95 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.9 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.89 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.78 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.73 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.72 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.67 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.65 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.61 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.6 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.55 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.5 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.49 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.46 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.37 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 97.25 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 97.22 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.14 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.11 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.01 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.01 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.98 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 96.98 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.97 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.94 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.86 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.85 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.84 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.84 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.63 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.62 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.57 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.49 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.48 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.38 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.36 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.35 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.32 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.24 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.18 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.04 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.9 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.87 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.79 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.55 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.21 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.2 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.03 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.91 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.91 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.81 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.8 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.64 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.74 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 92.33 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.52 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.97 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.41 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 88.97 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 88.85 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 88.57 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 86.78 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 84.86 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 84.83 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 84.31 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 82.19 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-68 Score=644.10 Aligned_cols=565 Identities=21% Similarity=0.361 Sum_probs=484.8
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 341 ~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
..|. |.+.|++++|||||+ +||+|+.|+.|+|||. +++.+.. +.+|...|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 4455 999999999999998 6899999999999995 5555443 6789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
|++||+++.|++|+|||.. ++.+ ..+.+|...|.+++|+|+++ +|++++.|+.+++|+... .....+.+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG-QLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTC-CEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeeccccc-ceeeeccCCCCc
Confidence 9999999999999999965 4443 37889999999999999999 899999999999999654 455677789999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|.++.++|+. ..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.
T Consensus 142 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCE
T ss_pred eeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcE
Confidence 9999998865 789999999999999854 3445566778889999999999999999985 889999995 6788
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
+..+.+|.. .|.+++|+|++++|++++.|+.|++||.. ++.+..+..+.. .|.+++|+|+++.+++++.|+.|++|
T Consensus 214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~--~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS--SVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 888999887 89999999999999999999999999964 677777776644 79999999999999999999999999
Q ss_pred EcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccc
Q 001159 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1135)
Q Consensus 660 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
+.... ..+.+.
T Consensus 290 ~~~~~--~~~~~~------------------------------------------------------------------- 300 (577)
T 2ymu_A 290 NRNGQ--LLQTLT------------------------------------------------------------------- 300 (577)
T ss_dssp ETTSC--EEEEEC-------------------------------------------------------------------
T ss_pred eCCCc--EEEEEe-------------------------------------------------------------------
Confidence 96432 111111
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccC
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 819 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 819 (1135)
.|...| .+++|+|+++.+++++.|+.+++|++...
T Consensus 301 ------------------------------~h~~~v-~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------- 335 (577)
T 2ymu_A 301 ------------------------------GHSSSV-WGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------- 335 (577)
T ss_dssp ------------------------------CCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTSC--------------
T ss_pred ------------------------------cCCCCe-EEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------
Confidence 144566 99999999999999999999999975321
Q ss_pred eeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEE
Q 001159 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 898 (1135)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 898 (1135)
.+.. +.+ | ...+.+++|+|++++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|
T Consensus 336 --------~~~~--~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l 400 (577)
T 2ymu_A 336 --------HLQT--LTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTI 400 (577)
T ss_dssp --------EEEE--ECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred --------eeEE--EeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEE
Confidence 1111 222 6 88999999999999999998 899999995 5788899999999999999999 89999
Q ss_pred EEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc
Q 001159 899 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 978 (1135)
Q Consensus 899 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 978 (1135)
++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + .+....+|. ..|
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v 470 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSV 470 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCE
Confidence 99999999999995 5778889999999999999999999999999999999999754 3 233444555 689
Q ss_pred eEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 979 TKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
.+++|+||+++|++ +.|+.|++||.+++.+..+. +|...|++++|+|||++|++++.||.|++||. +++.+..+.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 99999999999999 57899999999888777664 56899999999999999999999999999996 577777766
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEe
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~ 1099 (1135)
.| ...+.+++|+| |+++|+|++.||+|++||
T Consensus 547 ~h----------~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GH----------SSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CC----------SSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CC----------CCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 54 24566899999 789999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-66 Score=626.29 Aligned_cols=573 Identities=13% Similarity=0.158 Sum_probs=458.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.+.+.+++|+|||+ +||+++ ++.|+||++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 456889999999998 677776 57999999987765543 778999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCeeeeeecCCCCCe
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+|+++ .|++++.+ +.|++|| +++....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765433 2236788999999999999999 77777754 3667776 677788899999999
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++. ..|++|+.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999998652 36999999999999999888888889999999999999999999999985 889999999999998
Q ss_pred EEee-------cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-CCCcceEEEcCCCCEEEEEEC
Q 001159 581 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 581 ~~~~-------~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
..+. +|.+ .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5666 899999999999999999999999999999999988865422 112345555 6889999999
Q ss_pred CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCc
Q 001159 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1135)
Q Consensus 653 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1135)
|+.+++|+..++ ...+.+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998765 2221111
Q ss_pred ccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCc
Q 001159 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 733 ~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~ 812 (1135)
.|...| .+++|+|||++|++++.|+.|++||+..
T Consensus 322 -------------------------------------gh~~~v-~~l~~spdg~~l~s~s~D~~v~~Wd~~~-------- 355 (611)
T 1nr0_A 322 -------------------------------------GHNKAI-TALSSSADGKTLFSADAEGHINSWDIST-------- 355 (611)
T ss_dssp -------------------------------------CCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred -------------------------------------CCCCCE-EEEEEeCCCCEEEEEeCCCcEEEEECCC--------
Confidence 155666 9999999999999999999999997643
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE---EeCCCCCeEEE
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFL 888 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~---~~~h~~~v~~l 888 (1135)
+........ .| ...|.+++|++++. +++++ |+++++|++.++..... .........++
T Consensus 356 --------------~~~~~~~~~--~h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 356 --------------GISNRVFPD--VH-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp --------------CCEEECSSC--SC-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred --------------Cceeeeccc--CC-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 222221112 27 89999999998875 45555 99999999876543210 01133456889
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+|+| ++..++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ...
T Consensus 418 ~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~- 487 (611)
T 1nr0_A 418 AVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT- 487 (611)
T ss_dssp EECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-
T ss_pred EEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-
Confidence 9999 78777766 567899998 444 55565 88899999999999999999999999999998764221 112
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-C-CceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
.+|. ..|.+++|+|||++|++ +.|++|++|++ + ++.... ....+|...|.+++|||||++||+|+.|++|++|
T Consensus 488 ~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 488 IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence 3344 67999999999999999 57999999999 4 443322 1223479999999999999999999999999999
Q ss_pred ECCCcee-e-eeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRF-R-CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
+++++.. . ..+..| ....+.+++|+| +++ |++|+.||+|++|+++
T Consensus 564 ~~~~~~~~~~~~~~~h---------~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 564 NMNKPSDHPIIIKGAH---------AMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTCTTSCCEEETTSS---------TTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred ECCCcccccchhhccC---------cccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 9998652 2 222222 024567899998 666 9999999999999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-64 Score=614.49 Aligned_cols=567 Identities=16% Similarity=0.176 Sum_probs=456.8
Q ss_pred cCCcceeeecCCCCCCcccc------CCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccccc
Q 001159 312 TGQSDEVSFAGVAHTPNVYS------QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384 (1135)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~------~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~ 384 (1135)
.+....++|+|+|+.++... ++...++...++. |.+.|++++|||+|+ +||+|+.||+|+|||+.+++....
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee
Confidence 34566688888888766543 2223455666676 999999999999998 799999999999999976543211
Q ss_pred CCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEE
Q 001159 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~ 460 (1135)
..+.+|.+.|.+++|+|||++||+++.+ +.|++||. +.... .+.+|...|.+++
T Consensus 97 -----------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~ 154 (611)
T 1nr0_A 97 -----------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVD 154 (611)
T ss_dssp -----------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEE
T ss_pred -----------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEE
Confidence 1156799999999999999999999875 46777774 44333 6789999999999
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--
Q 001159 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-- 538 (1135)
|+|++.. .|++|+.|++|++||..+++++.++.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 155 f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 155 FKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp ECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred ECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 9999874 59999999999999999999999999999999999999854 899999999999999999888777663
Q ss_pred -----CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC--CceeEEEecCCCCEEEEEeCCCe
Q 001159 539 -----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 539 -----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~dg~ 611 (1135)
.|...|.+++|+|++++|++++. |++|++||+.+++.+..+..+.. ..+..+.| +++.+++++.|+.
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGF 305 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCC
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCc
Confidence 68889999999999999999985 88999999999999988875432 13445556 6788999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCc
Q 001159 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+++|+...++....+.+|.. .|.+++|+|+|++|++++.|++|++||+.++. ....+
T Consensus 306 i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~-------------------- 362 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF-------------------- 362 (611)
T ss_dssp EEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS--------------------
T ss_pred EEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec--------------------
Confidence 99999999988888876644 89999999999999999999999999998762 11110
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
...|
T Consensus 363 ----------------------------------------------------------------------------~~~h 366 (611)
T 1nr0_A 363 ----------------------------------------------------------------------------PDVH 366 (611)
T ss_dssp ----------------------------------------------------------------------------SCSC
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0114
Q ss_pred ccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 772 ASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
...| .+++|++++ .+++++.|+.+++|+......... ...... . .....+++|+|
T Consensus 367 ~~~v-~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~-----~-~~~~~~~~~s~ 421 (611)
T 1nr0_A 367 ATMI-TGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANK-----L-SSQPLGLAVSA 421 (611)
T ss_dssp SSCE-EEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEE-----C-SSCEEEEEECT
T ss_pred cceE-EEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeee-----c-CCCCcEEEEeC
Confidence 5566 999999876 588999999999998654221000 000000 1 44567899999
Q ss_pred CCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee--eEEecCcCCCeE
Q 001159 852 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRIT 929 (1135)
Q Consensus 852 dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~ 929 (1135)
+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|.+.|+
T Consensus 422 dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~ 495 (611)
T 1nr0_A 422 DGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEIT 495 (611)
T ss_dssp TSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEE
T ss_pred CCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceE
Confidence 99988888899999999 344 55555 888999999999 899999999999999999987653 234 67999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCC-CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCc
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE 1006 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~ 1006 (1135)
+|+|||||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+ .+.
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999999999999999999999987 432111 0122355 78999999999999999 57999999999 433
Q ss_pred eeeccCCCCCC-CCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 1007 CSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1007 ~~~~~~~~~~h-~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
... .....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 570 ~~~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHP-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCC-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ccc-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 221 0113467 78999999999999 9999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-63 Score=607.21 Aligned_cols=555 Identities=21% Similarity=0.367 Sum_probs=476.5
Q ss_pred cccCCcceeeecCCCCCCccccCCC------cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccc
Q 001159 310 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1135)
Q Consensus 310 ~~~~~~~~v~~s~~g~~~~~~~~d~------~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~ 382 (1135)
.|.+.|.+++|+|||+++++...|. .++++++++. |.+.|++++|||||+ +||+|+.|+.|+|||.. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 3567899999999999988876543 4667788888 999999999999998 78999999999999964 4444
Q ss_pred ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe
Q 001159 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1135)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s 462 (1135)
.. +.+|...|.+++|+|++++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999977632 23567899999999999
Q ss_pred cCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC
Q 001159 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 542 (1135)
|++. .+++++.++.+++|+. ..........|...|.++.++|++ .++++++.|+.|++||. +.+....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeC-CCcEEEEEecCCC
Confidence 9999 7899999999999995 455566777899999999998865 89999999999999995 4566777888999
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++|+.. ++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcE
Confidence 9999999999999999875 889999995 5778888998887 89999999999999999999999999965 567
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+..+..|.. .|.+++|+|+++++++++.|+.|++||.... . ...+.
T Consensus 296 ~~~~~~h~~--~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~~------------------------------ 341 (577)
T 2ymu_A 296 LQTLTGHSS--SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTLT------------------------------ 341 (577)
T ss_dssp EEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEEC------------------------------
T ss_pred EEEEecCCC--CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEEe------------------------------
Confidence 777776644 7999999999999999999999999997543 1 11111
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 782 (1135)
.|...+ .+++|+
T Consensus 342 -------------------------------------------------------------------~~~~~v-~~~~~s 353 (577)
T 2ymu_A 342 -------------------------------------------------------------------GHSSSV-WGVAFS 353 (577)
T ss_dssp -------------------------------------------------------------------CCSSCE-EEEEEC
T ss_pred -------------------------------------------------------------------CCCCCE-EEEEEC
Confidence 144556 999999
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-C
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G 861 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-d 861 (1135)
|+|+.|++++.||.+++|+... ..+.. +.+ | ...|.+++|+|||++|++++ |
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETT
T ss_pred CCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCC
Confidence 9999999999999999997421 11111 222 6 88999999999999999998 8
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEE
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV 941 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~ 941 (1135)
+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|+
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 99999995 5788899999999999999999 8999999999999999996 5677889999999999999999999999
Q ss_pred EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCC
Q 001159 942 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAP 1020 (1135)
Q Consensus 942 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~ 1020 (1135)
+++.|++|++||.. ++ .+....+|. ..|++++|+|||++|++ +.|+.|+|||.+++.+..+ .+|...
T Consensus 484 s~~~d~~i~iw~~~-~~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~ 551 (577)
T 2ymu_A 484 SASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSS 551 (577)
T ss_dssp EEETTSEEEEEETT-SC-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSC
T ss_pred EEeCCCEEEEEcCC-CC-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCC
Confidence 99999999999964 34 344455665 68999999999999999 5789999999988777665 357899
Q ss_pred EEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 1021 ISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
|++++|+|||++|++++.|++|++||
T Consensus 552 v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 552 VWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-63 Score=661.89 Aligned_cols=613 Identities=13% Similarity=0.172 Sum_probs=502.8
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.|.+.|++++|||+|+ ++|+|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+|++|
T Consensus 613 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEE
Confidence 3999999999999998 789999999999999999887654 67899999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
|+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|.++
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999987665 77899999999999996554489999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-------------CCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+|+|++ .++++++.||+|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+.
T Consensus 750 ~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~ 822 (1249)
T 3sfz_A 750 RFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVL 822 (1249)
T ss_dssp EECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEE
T ss_pred EEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEE
Confidence 999865 89999999999999999987766544321 23678899999999999886 67899
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
+||..++..+..+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..|.. .|.+++|+|++++++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEE
Confidence 9999999998888744444899999999999999999999999999999999999887754 89999999999999999
Q ss_pred ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCC
Q 001159 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.||.|++|++.+... ......... ...
T Consensus 901 s~dg~v~vw~~~~~~~-~~~~~~~~~---------------------------------------------------~~~ 928 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCK-NSAIVLKQE---------------------------------------------------IDV 928 (1249)
T ss_dssp ETTSCEEEEEHHHHHS-CCSSSEEEE---------------------------------------------------EEE
T ss_pred eCCCeEEEEEccccce-eeeecccce---------------------------------------------------eeE
Confidence 9999999999754311 000000000 000
Q ss_pred Ccccccccccc-cccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCC
Q 001159 731 SRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 809 (1135)
Q Consensus 731 ~~~~~~~~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 809 (1135)
.+.++...++. .....+.++...... ... .....+ .+++|+|+++++++++.+|.|++|++..
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~i-~~~~~sp~g~~l~~g~~~g~i~i~d~~~----- 992 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQ----IDY------LPEAQV-SCCCLSPHLEYVAFGDEDGAIKIIELPN----- 992 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCC----EEE------ECCSCE-EEEEECTTSSEEEEEETTSCCEEEETTT-----
T ss_pred EEcCCCcEEEEecCCcceEEEecCcce----EEE------cccCcE-EEEEEcCCCCEEEEEcCCCCEEEEEcCC-----
Confidence 01111111111 222344444433211 000 123456 9999999999999999999999997643
Q ss_pred CCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEE
Q 001159 810 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 888 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l 888 (1135)
+..... +.+ | ...|.+++|+|+|+++++++ ||.|++||+.+++... +.+|...|.++
T Consensus 993 -----------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~ 1050 (1249)
T 3sfz_A 993 -----------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDF 1050 (1249)
T ss_dssp -----------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEE
T ss_pred -----------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEE
Confidence 222221 222 7 88999999999999999998 8999999999987764 55799999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||++++++++.|++|++||+.+++. +...
T Consensus 1051 ~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l 1123 (1249)
T 3sfz_A 1051 RLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHEL 1123 (1249)
T ss_dssp EECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCC
T ss_pred EEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeee
Confidence 9999 55 577899999999999999999999999999999999999999999999999999999998773 4455
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCC------CCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSP------KDALPAPISSAIYSCDGLLVYAGFCDG 1040 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~------~~~h~~~i~~~~~s~d~~~l~~~~~dg 1040 (1135)
.+|. ..|.+++|+|||++|++ +.|+.|++||+ +++.+..+.+ ...|...|++++|+|||++|++++ |
T Consensus 1124 ~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g 1198 (1249)
T 3sfz_A 1124 KGHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1198 (1249)
T ss_dssp CCCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--S
T ss_pred ccCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--C
Confidence 5665 68999999999999999 57899999999 6666554411 245788999999999999999885 8
Q ss_pred eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1041 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1041 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.|++||+.+++.+..+..+. ..+.++.|+| ++.+|++++.||.|++|++.
T Consensus 1199 ~v~vwd~~~g~~~~~~~~~~----------~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1199 YLKWWNVATGDSSQTFYTNG----------TNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp SEEEBCSSSCBCCCCCCCSS----------CCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred eEEEEECCCCceeeeeeccC----------CcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 99999999999887766442 2344678898 78999999999999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-59 Score=572.45 Aligned_cols=556 Identities=10% Similarity=0.179 Sum_probs=473.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc----cccccCCceeecccccccchhhhhccCCCcc-eEEEEEcC-
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp- 418 (1135)
|.+.|++++|||+|+ +||+++ ++.|.|||+.++ +.... +.+|... |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 678999999999998 577776 889999999987 44432 6789999 99999999
Q ss_pred -CCCeEEEEeCCCeEEEEEeCCCC-----ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCe
Q 001159 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (1135)
Q Consensus 419 -d~~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~ 488 (1135)
++++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997541 1123346778999999999999999 78888877 6888887 677
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC---cEEEEEEcCC-CCEEEEEecCCC
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~~~~ 564 (1135)
.+..+.+|...|.+++|+|++. ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ +++|++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999998752 3899999999999999999888888998988 9999999999 999999875
Q ss_pred CCCeEEEEECCCCeEEEEe-e---cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCcceE
Q 001159 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 638 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 638 (1135)
++.|++||+.+++.+..+ . .|.. .|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 889999999999999999 5 6665 89999999 999999999999999999999999998876531 1356777
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCC
Q 001159 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1135)
Q Consensus 639 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 718 (1135)
.|. ++.++++++.||.|++||+.++ +....+.+|...+..
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~-------------------------------------- 344 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA-------------------------------------- 344 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE--------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE--------------------------------------
Confidence 785 8999999999999999999886 555666666554332
Q ss_pred CccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceee
Q 001159 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHK 798 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~ 798 (1135)
..+ ++ +++++.|+.|++|++. .+. ..|...| .+++| +++..+++++.|+.++
T Consensus 345 -----------~~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v-~~~~~-~~~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 345 -----------LTV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLI-VSLDN-SKAQEYSSISWDDTLK 396 (615)
T ss_dssp -----------EET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCE-EEEEC-CSTTCCEEEETTTEEE
T ss_pred -----------EEe-cC--cEEECCCCeEEEEEch---------hhc---CcccCce-EEEEE-CCCcEEEEEeCCCCEE
Confidence 223 33 5666778999999987 112 3477888 99999 7778899999999999
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF 878 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~ 878 (1135)
+|++..... ...+.+++++|++.+++++.++.+.+|++.+++.+..+
T Consensus 397 ~~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (615)
T 1pgu_A 397 VNGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 443 (615)
T ss_dssp ETTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec
Confidence 997653221 33578899999999999988899999999999999888
Q ss_pred eCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcccceee-EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 879 MSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 879 ~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
. |...+++++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 444 ~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 519 (615)
T 1pgu_A 444 R-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 519 (615)
T ss_dssp E-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred c-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC
Confidence 7 88899999998 579999999 999999999988766 67889999999999999999999999999999999998
Q ss_pred CceeceeeeecCCC-CCCCCCCceEEEECC----------CCcEEEE-EecCeEEEEec-CC-ceeeccCCCCCCCCCEE
Q 001159 957 WEKLKSRFIQAPAG-RQSPLVGETKVQFHN----------DQTHLLV-VHESQISVYDS-KL-ECSRSWSPKDALPAPIS 1022 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~----------dg~~l~~-~~d~~v~vwd~-~~-~~~~~~~~~~~h~~~i~ 1022 (1135)
++. +....+ |. ..|++++|+| ++++|++ +.|+.|++||+ ++ ..+..+ .+|...|+
T Consensus 520 ~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~ 588 (615)
T 1pgu_A 520 REV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVN 588 (615)
T ss_dssp TEE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEE
T ss_pred Ccc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh---hcCccceE
Confidence 874 334444 54 7899999999 9999999 57999999999 44 455544 45689999
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1023 SAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1023 ~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+++|+||++ |++++.||.|++|++++
T Consensus 589 ~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 589 NLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEcCCCC-eEEecCCceEEEEeeec
Confidence 999999999 99999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-59 Score=615.97 Aligned_cols=572 Identities=16% Similarity=0.218 Sum_probs=480.1
Q ss_pred cccCCcceeeecCCCCCCccccCCC-------cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccc
Q 001159 310 IRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 310 ~~~~~~~~v~~s~~g~~~~~~~~d~-------~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~ 381 (1135)
.+.+.|.+++|+|+|+.+++...|. .+++.+.++. |.+.|++++|+|+|+ ++|+|+.||.|+|||+.+++.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCce
Confidence 4567899999999999888776554 5677788887 999999999999998 789999999999999999887
Q ss_pred cccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEE
Q 001159 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1135)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v 459 (1135)
+.. +.+|...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.+|...|+++
T Consensus 692 ~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 692 VHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHC 749 (1249)
T ss_dssp EEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEE
T ss_pred EEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEE
Confidence 654 668999999999999 55689999999999999999987655 678999999999
Q ss_pred EEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC-------------CCCCeeEEEeeccCCccEEEEEEcCCeEEEE
Q 001159 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iw 526 (1135)
+|+|+++ ++++++.||+|++||+.+++....+.. +...+.+++|+|++ ..+++++ ++.+.+|
T Consensus 750 ~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~-~~~v~~~ 824 (1249)
T 3sfz_A 750 RFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--DKIIVAA-KNKVLLF 824 (1249)
T ss_dssp EECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS--SEEEEEE-TTEEEEE
T ss_pred EEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC--CEEEEEc-CCcEEEE
Confidence 9999999 899999999999999999987766542 23478889998865 7787776 7899999
Q ss_pred eCcCCCceeEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE
Q 001159 527 LYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 527 d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 605 (1135)
|+.+......+. .|...+.+++|+|+++++++++. ++.|++||..++..+..+.+|.. .|.+++|+|+++++++
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCceeeecCCCcc-ceEEEEECCCCCEEEE
Confidence 999988877655 78889999999999999999875 88999999999999999999988 8999999999999999
Q ss_pred EeCCCeEEEEECCCCce-----------------------------EEEEeCC------CCCCCcceEEEcCCCCEEEEE
Q 001159 606 AGDEFQIKFWDMDNMNM-----------------------------LTTVDAD------GGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~-----------------------------~~~~~~~------~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
++.||.|++|++.+... +...... .....+.+++|+|+++++++|
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g 979 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG 979 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence 99999999999753210 0000000 012358899999999999999
Q ss_pred ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCC
Q 001159 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.+|.|++|++.++ .....+.
T Consensus 980 ~~~g~i~i~d~~~~-~~~~~~~---------------------------------------------------------- 1000 (1249)
T 3sfz_A 980 DEDGAIKIIELPNN-RVFSSGV---------------------------------------------------------- 1000 (1249)
T ss_dssp ETTSCCEEEETTTT-SCEEECC----------------------------------------------------------
T ss_pred cCCCCEEEEEcCCC-ceeeecc----------------------------------------------------------
Confidence 99999999998766 2221111
Q ss_pred CcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCC
Q 001159 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 810 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~ 810 (1135)
.|...| .+++|+|+|+++++++.||.|++|++..
T Consensus 1001 ---------------------------------------~h~~~v-~~l~~s~dg~~l~s~~~dg~i~vwd~~~------ 1034 (1249)
T 3sfz_A 1001 ---------------------------------------GHKKAV-RHIQFTADGKTLISSSEDSVIQVWNWQT------ 1034 (1249)
T ss_dssp ---------------------------------------CCSSCC-CCEEECSSSSCEEEECSSSBEEEEETTT------
T ss_pred ---------------------------------------cCCCce-EEEEECCCCCEEEEEcCCCEEEEEECCC------
Confidence 145556 8999999999999999999999997653
Q ss_pred CcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 811 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
+.... ... | ...+.+++|+|++.+++.+.||+|++||+.+++.+..+.+|...|++++|
T Consensus 1035 ----------------~~~~~--~~~--~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 1093 (1249)
T 3sfz_A 1035 ----------------GDYVF--LQA--H-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093 (1249)
T ss_dssp ----------------TEEEC--CBC--C-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEE
T ss_pred ----------------CceEE--Eec--C-CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEE
Confidence 22221 112 6 88999999999887665555999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceee-e---e
Q 001159 891 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF-I---Q 966 (1135)
Q Consensus 891 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~-~---~ 966 (1135)
+| ++++|++++.||.|++||+.+++++..+.+|.+.|++++|+|||++|++++.||+|++||+.+++...... . .
T Consensus 1094 s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1172 (1249)
T 3sfz_A 1094 SS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172 (1249)
T ss_dssp CS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---
T ss_pred CC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccc
Confidence 99 89999999999999999999999999999999999999999999999999999999999999987544320 0 1
Q ss_pred cCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 967 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
...+|. ..|++++|+|||+++++++ +.|++||+ ++..+..+. .|...|.+++|+|||++|++++.||.|++|
T Consensus 1173 ~~~~~~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1173 GTATHG---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFY---TNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp ----CC---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCC---CSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred cccccC---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeee---ccCCcccEEEECCCCCEEEEecCCcEEEEE
Confidence 112333 6799999999999999875 89999999 776665543 457889999999999999999999999999
Q ss_pred ECC
Q 001159 1046 DAE 1048 (1135)
Q Consensus 1046 d~~ 1048 (1135)
++.
T Consensus 1246 ~l~ 1248 (1249)
T 3sfz_A 1246 QVL 1248 (1249)
T ss_dssp CCC
T ss_pred eec
Confidence 974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=568.57 Aligned_cols=603 Identities=10% Similarity=0.055 Sum_probs=438.9
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
...+.|.+.|++++|+|+|+ +||+|+.||.|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34456899999999999998 79999999999999987765432 124788999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee---------
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 490 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 490 (1135)
|++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ +|++|+.||+|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 443 778999999999999 8999999999999999988764
Q ss_pred --eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC------------------CCcEEEEEEc
Q 001159 491 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 550 (1135)
Q Consensus 491 --~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s 550 (1135)
..+.+|.++|.+++|+|.+ +..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 3457799999999999953 3689999999999 9999988877776655 4679999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEE--ee---cc------------cCCceeEEEec----CCC-CEEEEEeC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFD----TTR-NRFLAAGD 608 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~i~~s----~~~-~~l~~~~~ 608 (1135)
|+|++|++++. |+.|++||+++++.+.. +. .| ....|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 88999999999987754 21 22 12269999995 444 45666766
Q ss_pred C-----CeEEEEECC------------------CCceEEEEeCCCCCCCcceEEEcC----------CCCEEEEEECCCc
Q 001159 609 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 655 (1135)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~l~~~~~dg~ 655 (1135)
| ..+.+|++. +.+....+... +...|..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22334444321 123677777755 3447889999999
Q ss_pred EEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccc
Q 001159 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 656 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|++|++.++.........+... . +.. +.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l-~-----------------~~~----------------------------------~~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL-S-----------------WLR----------------------------------PL 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG-T-----------------TBT----------------------------------TB
T ss_pred EEEEECCCCCcccccccCCCcc-c-----------------ccC----------------------------------CC
Confidence 9999997663222211111000 0 000 00
Q ss_pred cccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccc
Q 001159 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 815 (1135)
.. .+........+|+......... . .+..+|...+ .+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~-~~~~s~~~~~~w~~~~~~~~~~--~--~~l~G~~~~v-~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~----- 472 (902)
T 2oaj_A 404 AT-TSMAASVPNKLWLGALSAAQNK--D--YLLKGGVRTK-RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN----- 472 (902)
T ss_dssp EE-EEEEEEEEHHHHHHHHHTTBCC--C--CSCCCSBCCC-CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-----
T ss_pred ee-EEEEEEcCHHHHHHHHhcccCC--C--CcccCCcCCC-CcccccccCcEEEEecCCCcEEEEECCCccccCC-----
Confidence 00 0001112233454321100000 0 1122356666 8889999999999999999999999865421000
Q ss_pred cccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc----------------------
Q 001159 816 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF---------------------- 872 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~---------------------- 872 (1135)
..+... ... ..+..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ----~~~~~~----l~~-~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 473 ----ASFEVN----LSR-TLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp ----BCEEEE----HHH-HTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred ----ceEEee----chh-hcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 000000 000 001137 88999999999999999999 999999999765
Q ss_pred -----------------------cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-----Eec-C
Q 001159 873 -----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-G 923 (1135)
Q Consensus 873 -----------------------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~ 923 (1135)
+++..+.+|.+.|++++||| +| +||+|+.|++|+|||+.+...+. .+. +
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g 620 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA 620 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS
T ss_pred ccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc
Confidence 24678889999999999999 88 99999999999999998877653 343 8
Q ss_pred cCCCeEEEEEc-----CCC---CeEEEEcCCCcEEEEeC---CCCceeceeeeecCCCCCCCCCCceEEE-EC-------
Q 001159 924 HQNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQSPLVGETKVQ-FH------- 984 (1135)
Q Consensus 924 h~~~i~~l~~s-----~d~---~~l~s~~~D~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s------- 984 (1135)
|.+.|++|+|+ ||| ++|++++.|++|++||+ .+++......-.....+. ..|..++ |+
T Consensus 621 h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~ 697 (902)
T 2oaj_A 621 QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK---GPIHKIDAFSKETKSSC 697 (902)
T ss_dssp CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS---CCCCEEEEEETTTCCBC
T ss_pred cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCC---CceEEEEeEecCCCCcc
Confidence 99999999999 886 89999999999999999 666643322111111111 4455555 55
Q ss_pred ---------------CCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEE---E------EeeCCCEEEEEeCC
Q 001159 985 ---------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFCD 1039 (1135)
Q Consensus 985 ---------------~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~---~------~s~d~~~l~~~~~d 1039 (1135)
+++..| ++.+..|+||++ ++++...... |...+.++ . |++++..|++++.|
T Consensus 698 ~a~~~~~~~l~~~~~~~~~~l-~~~~~~ir~~~~~~~k~~~k~~~---~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
T 2oaj_A 698 LATIPKMQNLSKGLCIPGIVL-ITGFDDIRLITLGKSKSTHKGFK---YPLAATGLSYISTVEKNNDRKNLTVIITLEIN 773 (902)
T ss_dssp BCBHHHHHGGGGTCCCCEEEE-EECSSEEEEECTTCCCEEEEECS---SCEEEEEEEEEEEECSSSCEEEEEEEEEEETT
T ss_pred cCCHHHHhccCCCCCCCeEEE-EEeccceEEEeCccccceeeEcc---cceeeeEEEEEEeccccccccCceEEEEEeCC
Confidence 455444 445889999999 7777765522 34555565 5 78999999999999
Q ss_pred CeEEEEECCCceeeeeeCCc
Q 001159 1040 GAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1040 g~I~vwd~~~~~~~~~~~~~ 1059 (1135)
|.|++|++.+++++.++...
T Consensus 774 g~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 774 GHLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp SEEEEEETTTCCEEEEEECS
T ss_pred CcEEEEECcchHHHhhccCC
Confidence 99999999999999887754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-56 Score=544.89 Aligned_cols=557 Identities=10% Similarity=0.090 Sum_probs=457.5
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCC----CceeeeeEeecccCC-EEEEEEec--CCCeEEEEEEcCCC
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGG-VNDIAFAH--PNKQLCIVTCGDDK 477 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~-v~~v~~s~--d~~~~~l~s~~~d~ 477 (1135)
..|.+.|.+++|+|+|++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 35889999999999999999998 789999999987 5444 78899999 99999999 999 899999999
Q ss_pred cEEEEEcCCC--------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCceeEecCCCCcEE
Q 001159 478 MIKVWDVVAG--------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 478 ~i~iwd~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~ 545 (1135)
.|++||+.++ +.+..+..|..+|.+++|+|++ .++++++.+ +.|++|| ..+....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999755 6778888999999999999865 899999988 7888887 5667778889999999
Q ss_pred EEEEcCCCC-EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC--ceeEEEecCC-CCEEEEEeCCCeEEEEECCCCc
Q 001159 546 MMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .|.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6778764 889999999999999999887642 6999999999 9999999999999999999999
Q ss_pred eEEEE-e---CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCC
Q 001159 622 MLTTV-D---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 622 ~~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 697 (1135)
.+..+ . .+ ...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+......
T Consensus 241 ~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~----------------- 299 (615)
T 1pgu_A 241 FLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGN----------------- 299 (615)
T ss_dssp EEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGG-----------------
T ss_pred EeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccC-----------------
Confidence 99888 4 44 3479999999 9999999999999999999887 444444433211000
Q ss_pred CccccccccCCCCCCCCCCCCCccccccccCCCCccccccc-ccccccccccccccCCcCCccceeEeecCCcccccceE
Q 001159 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
......+ +++.. ++++.++.|++|++.... ... .+ ..|...|
T Consensus 300 ----------------------------~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~---~~~--~~--~~~~~~v- 342 (615)
T 1pgu_A 300 ----------------------------QQVGVVA-TGNGRIISLSLDGTLNFYELGHDE---VLK--TI--SGHNKGI- 342 (615)
T ss_dssp ----------------------------CEEEEEE-EETTEEEEEETTSCEEEEETTEEE---EEE--EE--CCCSSCE-
T ss_pred ----------------------------ceeEEEe-CCCCeEEEEECCCCEEEEECCCCc---EEE--EE--eCCCCCE-
Confidence 0000111 24444 444567999999987521 111 22 2377888
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+++| |+ +++++.||.|++|++. .+. ..| ...|.+++| +++..+
T Consensus 343 ~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~~-----~~~-~~~v~~~~~-~~~~~l 386 (615)
T 1pgu_A 343 TALTV-NP---LISGSYDGRIMEWSSS-------------------------SMH-----QDH-SNLIVSLDN-SKAQEY 386 (615)
T ss_dssp EEEET-TT---TEEEETTSCEEETTTT-------------------------EEE-----CCC-CSCEEEEEC-CSTTCC
T ss_pred EEEEe-cC---cEEECCCCeEEEEEch-------------------------hhc-----Ccc-cCceEEEEE-CCCcEE
Confidence 99999 88 8999999999999643 111 126 899999999 667777
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 935 (1135)
++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.+++.+..+. |...+++++|+
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 455 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS- 455 (615)
T ss_dssp EEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-
T ss_pred EEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc-
Confidence 7777 9999999987654432 788999999 88888877 88999999999999888887 88999999999
Q ss_pred CCCeEEEEcC-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccC
Q 001159 936 TLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWS 1012 (1135)
Q Consensus 936 d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~ 1012 (1135)
+++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|++++|++ +.|+.|++||+ +++.+..+.
T Consensus 456 -~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 527 (615)
T 1pgu_A 456 -QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 527 (615)
T ss_dssp -SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred -CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee
Confidence 889999999 9999999999865321 3444554 68999999999999999 57899999999 777766543
Q ss_pred CCCCCCCCEEEEEEee----------CCCEEEEEeCCCeEEEEECCCc-eeeeeeCCceeccccccCCCCccEEEEecCC
Q 001159 1013 PKDALPAPISSAIYSC----------DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1013 ~~~~h~~~i~~~~~s~----------d~~~l~~~~~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1135)
. .|...|++++|+| ++++|++++.||.|++||+.++ +.+..+..|. ..+.+++|+|
T Consensus 528 ~--~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~----------~~v~~l~~s~- 594 (615)
T 1pgu_A 528 A--FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK----------DGVNNLLWET- 594 (615)
T ss_dssp C--CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST----------TCEEEEEEEE-
T ss_pred c--CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc----------cceEEEEEcC-
Confidence 2 2689999999999 9999999999999999999998 6777666442 4566889999
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001159 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
++. |++++.||+|++|++..
T Consensus 595 ~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TTE-EEEEETTSCEEEEEEC-
T ss_pred CCC-eEEecCCceEEEEeeec
Confidence 667 99999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-55 Score=546.88 Aligned_cols=588 Identities=12% Similarity=0.105 Sum_probs=427.4
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+|...|++++|+|++++||+|+.||+|+||+..+.+... . ..|...|.+++|+| ++ +|++++.|++|++||+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLSL 86 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEET
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEEC
Confidence 4799999999999999999999999999999988754332 2 35788999999999 87 8999999999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-----------eEecCCCCcEEEEEEcCCC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~~~ 553 (1135)
.+++++..+. |...|++++|+|++ .++++|+.||+|++||+++.... .....|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~ 163 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD 163 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence 9999998886 77899999998865 89999999999999999876643 2235677899999999964
Q ss_pred -CEEEEEecCCCCCCeEEEEECCCCeEEEEeecc-----------------cCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 554 -TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
..+++++. ++.| +||+++++.++.+..| +...|.+++|+|+|++|++++.||.|++|
T Consensus 164 ~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 164 IGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp EEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 57777753 7889 9999999999888766 12379999999999999999999999999
Q ss_pred ECCCCceEEEEeC-----CC-----------CCCCcceEEEc----CCC-CEEEEEECC-----CcEEEEEcCCCchhhh
Q 001159 616 DMDNMNMLTTVDA-----DG-----------GLPASPRLRFN----KEG-SLLAVTTSD-----NGIKILANSDGVRLLR 669 (1135)
Q Consensus 616 d~~~~~~~~~~~~-----~~-----------~~~~v~~~~~~----~~~-~~l~~~~~d-----g~i~iwd~~~~~~~~~ 669 (1135)
|+.+++++..... +. +...|.+++|+ |++ .++++|+.+ +.+.+|+...... +.
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~~ 317 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-YS 317 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-GG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-cc
Confidence 9999988765221 21 23368999995 443 567777665 3788887421100 00
Q ss_pred hccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccc
Q 001159 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 749 (1135)
.++.+....+
T Consensus 318 ----------------------------------------------------------------------~~s~~~~~~~ 327 (902)
T 2oaj_A 318 ----------------------------------------------------------------------ITSYEGMKNY 327 (902)
T ss_dssp ----------------------------------------------------------------------GCCHHHHHHH
T ss_pred ----------------------------------------------------------------------ccchhhhhhh
Confidence 0000111111
Q ss_pred cccCCcCCccceeEeecCCcccccceEEEEEEec----------CCcceeEecccceeeeEEeccccCCCC-----C---
Q 001159 750 WRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS-----G--- 811 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~----------dg~~l~~~~~dg~i~iw~~~~~~~~~~-----~--- 811 (1135)
|+-. ...+.+.+ .+...+ ..+.+.+ +...+++++.||.+++|++..+..... .
T Consensus 328 ~~~~-----~~~~~~~~---~~~~~v-~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 328 YANP-----KQMKIFPL---PTNVPI-VNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHSC-----SEEEEECC---SSSSCE-EEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hcCc-----cceEEEec---CCCCce-EEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 1100 00011110 123445 6666654 334678888899999999854311000 0
Q ss_pred ---ccc-----ccccCeeecCC---CCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEE----
Q 001159 812 ---KAT-----ANVAPQLWQPP---SGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM---- 875 (1135)
Q Consensus 812 ---~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~---- 875 (1135)
... ......+|+.. .+.. ...+.+ | ...+.+++|+||+++||+|+ |++|++||+.++...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 000 00011123211 0111 112333 6 77788899999999999999 999999999887431
Q ss_pred EE--Ee-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---------------------------------
Q 001159 876 TM--FM-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--------------------------------- 915 (1135)
Q Consensus 876 ~~--~~-----~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--------------------------------- 915 (1135)
.. +. +|...|.+++|+| ++++||+|+.||+|+|||+.++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 11 11 7899999999999 8999999999999999999876
Q ss_pred ------------eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC-CCCCCCCCceEEE
Q 001159 916 ------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 982 (1135)
Q Consensus 916 ------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 982 (1135)
+++..+.+|.+.|++|+||||| +||+++.|++|++||++++..+....+.... +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 2467788999999999999999 9999999999999999887643321223343 666 7899999
Q ss_pred EC-----CCC---cEEEE-EecCeEEEEec----CCceeeccCCCC--CCCCCEEEEE-Ee-------------------
Q 001159 983 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1027 (1135)
Q Consensus 983 ~s-----~dg---~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~--~h~~~i~~~~-~s------------------- 1027 (1135)
|+ ||| ++|++ +.|++|++||+ ++++...+..+. .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 67999999998 555555543321 2357777777 76
Q ss_pred ---eCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEE-EE------ecCCCCCEEEEEecCCcEEE
Q 001159 1028 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV-IA------PHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1028 ---~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~sg~~dg~v~~ 1097 (1135)
+++.+|+++ +..|+||++.+++..+....+. ..+..++ +. |++ ++..|++++.||+|++
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~--------~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~ 778 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYP--------LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRV 778 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSC--------EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEcccc--------eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEE
Confidence 556555554 7799999999998887654331 0111111 23 455 6789999999999999
Q ss_pred EecCCCcccc
Q 001159 1098 VEPSDAELKW 1107 (1135)
Q Consensus 1098 W~~~~~~~~~ 1107 (1135)
|++.+.+..-
T Consensus 779 ~s~p~l~~~~ 788 (902)
T 2oaj_A 779 FTIPDFKEQM 788 (902)
T ss_dssp EETTTCCEEE
T ss_pred EECcchHHHh
Confidence 9999988443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=488.96 Aligned_cols=481 Identities=15% Similarity=0.228 Sum_probs=384.9
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..+.+. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 345555 899999999999998 788999999999999999876653 66799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h 496 (1135)
|++++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987655 6788999999999999999 8999999999999999987 777888999
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcC--CCCEEEEEecCCCCCCeEEEEE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999983 23799999999999999998888777766655 7899999999 9999999875 88999999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE-EEEEEC
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LAVTTS 652 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~ 652 (1135)
..+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEE
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEe
Confidence 999999999999877 899999999999999999999999999999999999887644 7999999999873 244445
Q ss_pred CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCc
Q 001159 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1135)
Q Consensus 653 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1135)
++.+.+|++..+.
T Consensus 292 ~~~~~~~~~~~~~------------------------------------------------------------------- 304 (814)
T 3mkq_A 292 DNGFTVLSLGNDE------------------------------------------------------------------- 304 (814)
T ss_dssp TTEEEEEECSCCS-------------------------------------------------------------------
T ss_pred CCCEEEEEcCCCC-------------------------------------------------------------------
Confidence 6678888865441
Q ss_pred ccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEeccccee-eeEEeccccCCCCC
Q 001159 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSG 811 (1135)
Q Consensus 733 ~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i-~iw~~~~~~~~~~~ 811 (1135)
..+.++|+|+.+++++.+... .++....
T Consensus 305 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------- 333 (814)
T 3mkq_A 305 --------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVI------- 333 (814)
T ss_dssp --------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEEC-------
T ss_pred --------------------------------------------ceeEECCCCCEEEECcccccceeeeeeec-------
Confidence 223344455544444333211 0000000
Q ss_pred cccccccCeeecCCCCcceeccCC-CCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 812 KATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
...|+...+........ ...+ ...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|
T Consensus 334 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~ 400 (814)
T 3mkq_A 334 -------RGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVW 400 (814)
T ss_dssp -------CSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEE
T ss_pred -------ccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEE
Confidence 00112222211111000 0114 677899999999999999999999999987654432 356889999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC---CeEEEEcCCCcEEEEeCCCCceeceeeeec
Q 001159 891 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQA 967 (1135)
Q Consensus 891 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 967 (1135)
+| ++++||+++.+|.|++|+ .+.+|...|.+++|+||+ .+|++++.|++|++||+.+++.+ ..
T Consensus 401 sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~-----~~ 466 (814)
T 3mkq_A 401 GP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLV-----RR 466 (814)
T ss_dssp CT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEE-----EE
T ss_pred eC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEE-----EE
Confidence 99 899999999999999995 345688889999999998 68999999999999999988743 33
Q ss_pred CCCCCCCCCCceEEEECCCCcEEEEE------ecCeEEEEec
Q 001159 968 PAGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYDS 1003 (1135)
Q Consensus 968 ~~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~v~vwd~ 1003 (1135)
...+. ..++|+|||++|+++ .++.+.+|..
T Consensus 467 ~~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 IDVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ESSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 33332 389999999999997 6666666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=464.55 Aligned_cols=464 Identities=16% Similarity=0.192 Sum_probs=382.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++|+.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999986555 6778999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcC-CCCEEEEEec
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+++. .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999865 79999999999999999987 45567888999999999999 8889998875
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..|.. .|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 889999999999888888887755899999999 999999999999999999999999999987654 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|+++++++++.||.|++||..++ .....+..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~---------------------------------------------- 268 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV---------------------------------------------- 268 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec----------------------------------------------
Confidence 9999999999999999999998776 22222111
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcce-eEecccceee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSL-LALASNAVHK 798 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l-~~~~~dg~i~ 798 (1135)
+...+ .+++|+|+|..+ ++.+.++.+.
T Consensus 269 ---------------------------------------------------~~~~v-~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 269 ---------------------------------------------------GLERS-WCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp ---------------------------------------------------SSSSE-EEEEECTTCGGGEEEEEETTEEE
T ss_pred ---------------------------------------------------CCCcE-EEEEEccCCCceEEEEEeCCCEE
Confidence 23445 999999999764 6666677788
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CC---eEEE------EE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FN 868 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg---~i~v------wd 868 (1135)
+|++. .....++++|+|+.+++++ +. .+.. |+
T Consensus 297 ~~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (814)
T 3mkq_A 297 VLSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEE 338 (814)
T ss_dssp EEECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCC
T ss_pred EEEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeecccccc
Confidence 88642 1223577889999999876 32 1222 33
Q ss_pred CCCccE----EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEc
Q 001159 869 MMTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 944 (1135)
Q Consensus 869 ~~~~~~----~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~ 944 (1135)
+..+.. ...+..+...+.+++|+| ++++|++++ |+.+.+|++...... +.+.|.+++|+||++++++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~ 411 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALID 411 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEEC
T ss_pred cccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEe
Confidence 333332 234455677899999999 899999988 899999998654432 346788999999999999999
Q ss_pred CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC---cEEEE-EecCeEEEEec-CCceeeccCCCCCCCC
Q 001159 945 ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ---THLLV-VHESQISVYDS-KLECSRSWSPKDALPA 1019 (1135)
Q Consensus 945 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~ 1019 (1135)
.|+.|++|+.-. ++. ..+..++|+||| ++|++ +.++.|++||+ +++.+..+...
T Consensus 412 ~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~----- 470 (814)
T 3mkq_A 412 ETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN----- 470 (814)
T ss_dssp TTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC-----
T ss_pred CCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecC-----
Confidence 999999996332 122 456788999998 45555 78999999999 77777666433
Q ss_pred CEEEEEEeeCCCEEEEE------eCCCeEEEEE
Q 001159 1020 PISSAIYSCDGLLVYAG------FCDGAIGVFD 1046 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~~~------~~dg~I~vwd 1046 (1135)
...++|+|||++|+++ +.++.+.+|.
T Consensus 471 -~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 471 -AKDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp -EEEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred -CCEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 2399999999999999 6665555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=413.90 Aligned_cols=283 Identities=20% Similarity=0.363 Sum_probs=263.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|.++|++++|+|+++ ++++|+.||.|+|||+.+++.... +.+|...|.+++|+|++++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 677999999999998 799999999999999999876653 678999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++.++.+|...|.++.
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999876655 6789999999999999999 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC--------------------CCEEEEEecCCC
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 564 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~~~~ 564 (1135)
++|++ .++++|+.|++|++||+.+......+..|...|.+++|+|+ +.+|++++.
T Consensus 242 ~~~~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 98754 89999999999999999999999999999999999999996 668999875
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
|+.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 88999999999999999999887 899999999999999999999999999999999999987755 79999999999
Q ss_pred CEEEEEECCCcEEEEEc
Q 001159 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~ 661 (1135)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=361.41 Aligned_cols=293 Identities=19% Similarity=0.312 Sum_probs=263.7
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.....++. |.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 34566666 999999999999998 789999999999999998876643 567999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|+|++++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 233446789999999999999874 8899999999999999999999999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|.+.|.+++|+|++ .++++|+.|++|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 182 ~h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 999999999999855 89999999999999999999999999999999999999999999999985 889999999
Q ss_pred CCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
++++.+..+.... ...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+|.. .|.+++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCC
Confidence 9998887775432 22689999999999999999999999999999999999987754 89999999999999999999
Q ss_pred CcEEEEE
Q 001159 654 NGIKILA 660 (1135)
Q Consensus 654 g~i~iwd 660 (1135)
++|+|||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=362.97 Aligned_cols=295 Identities=17% Similarity=0.277 Sum_probs=264.4
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
...+++. |.+.|++++|+|+++ +||+|+.||.|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 3455666 999999999999998 789999999999999988776543 4568889999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCc---eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGE---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~---~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 123346778999999999999998 8999999999999999999999999
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|...|.+++++|..++.+|++|+.||+|++||+++++....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999999877789999999999999999999999999999999999999999999999985 88999999
Q ss_pred CCCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 574 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
+++++.+..+..+. ...+.+++|+|++.++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcC
Confidence 99998887776543 22688999999999999999999999999999999988887754 8999999999999999999
Q ss_pred CCcEEEEE
Q 001159 653 DNGIKILA 660 (1135)
Q Consensus 653 dg~i~iwd 660 (1135)
|++|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=359.45 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=264.0
Q ss_pred eeeEEeec-CCCCeeEEEEecC----CCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQ----QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~----g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+...+. |.+.|++++|+|+ ++ +|++|+.|++|+||++..++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 34445555 9999999999985 44 799999999999999976643211 1267899999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987655 6778999999999999999 89999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+..|...|.+++|+|++ .+|++|+.||.|++||+++++....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 159 ~~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999998865 89999999999999999999888899999999999999999999999975 889999
Q ss_pred EECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE
Q 001159 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 651 (1135)
||++++..+..+.+|.. .|.+++|+|++.+|++++.|++|++||+.+++++..+..|.. .|.+++|+|++++|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEe
Confidence 99999999999999987 899999999999999999999999999999999999987644 799999999999999999
Q ss_pred CCCcEEEEEc
Q 001159 652 SDNGIKILAN 661 (1135)
Q Consensus 652 ~dg~i~iwd~ 661 (1135)
.||+|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-39 Score=351.43 Aligned_cols=292 Identities=17% Similarity=0.308 Sum_probs=256.5
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..+++. |.+.|++++|+|+|+ +|++|+.||.|+|||+.++..+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 3456666 899999999999998 788999999999999998876653 5679999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 495 (1135)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987655 7889999999999999999 8999999999999999987 55678899
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-CCCCcEEEEEEcC--CCCEEEEEecCCCCCCeEEEE
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 572 (1135)
|...|.+++|+|.. +..|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++. |+.|++|
T Consensus 139 h~~~v~~v~~~p~~-~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTTC-TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCCC-CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 99999999999853 3799999999999999998877766554 4557889999986 7789999985 8899999
Q ss_pred ECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC--EEEEE
Q 001159 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~ 650 (1135)
|+++++.+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+.. .+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEe
Confidence 9999999999999988 899999999999999999999999999999999999986644 789999999875 57777
Q ss_pred ECCCcEEEEEcCC
Q 001159 651 TSDNGIKILANSD 663 (1135)
Q Consensus 651 ~~dg~i~iwd~~~ 663 (1135)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 665 577777654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.10 Aligned_cols=294 Identities=15% Similarity=0.242 Sum_probs=260.0
Q ss_pred CeeeeeecCCCCCeeEEEeeccC--CccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKE--SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
+.....+.+|.+.|++++|+|+. ++.+|++|+.|++|++||+..... ...+.+|...|.+++|++++..+++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 33455677999999999998852 457999999999999999987654 3367889999999999999999999985
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECC
Confidence 88999999999999999988876 788999999999999999999999999999999888876644 799999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++++|++++.||.|++||+.++. .+..
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~-~~~~---------------------------------------------------- 201 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGK-LLHT---------------------------------------------------- 201 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE-EEEE----------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCc-EEEE----------------------------------------------------
Confidence 99999999999999999987651 0000
Q ss_pred cccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEe
Q 001159 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h 881 (1135)
+.+ | ...|.+++|+|++++|++++ |++|++||+.++++...+.+|
T Consensus 202 -------------------------------~~~--h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (321)
T 3ow8_A 202 -------------------------------LEG--H-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247 (321)
T ss_dssp -------------------------------ECC--C-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC
T ss_pred -------------------------------Ecc--c-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC
Confidence 001 4 67788999999999999999 899999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
...|.+++|+| ++.+|++|+.|++|++||+.+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 248 ~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 248 ASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999963
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=351.15 Aligned_cols=301 Identities=20% Similarity=0.268 Sum_probs=259.4
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..+..++. |.+.|++++|+|++..+|++|+.|++|++|++........ .+...+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34566777 9999999999998755899999999999999875432110 11123678999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++ +.++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987655 7889999999999999999 89999999999999985 567788899
Q ss_pred CCCCeeEEEeeccC----CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 496 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
|...|.++.+.|.. ++..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998853 3458999999999999999998888889999999999999999999999985 889999
Q ss_pred EECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CCCCcceEEEcCCCC
Q 001159 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 645 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 645 (1135)
||+.+++.+..+..+. .|.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999999988653 79999999999999888754 59999999888777765331 234678999999999
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001159 646 LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~ 664 (1135)
+|++|+.||.|++||+.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=366.89 Aligned_cols=247 Identities=21% Similarity=0.353 Sum_probs=232.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|..+|++++|+|++++|++|+.||+|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987665 7889999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++++.++.+|...|.+++|+|++ .+|++|+.|++|++||++++.....+..|...|.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999999865 89999999999999999999999999999999999999999999999985
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC--------------------CCEEEEEeCCCeEEEEECCCCceE
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.++++|+.|+.|++||+.+++++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 88999999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..+.+|.. .|.+++|+|++++|++++.||+|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99987754 7999999999999999999999999998766
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=367.74 Aligned_cols=306 Identities=17% Similarity=0.285 Sum_probs=265.0
Q ss_pred CCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 333 d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.... +.+|...|
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v 111 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWV 111 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTC
T ss_pred ccceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCE
Confidence 334456777787 999999999999998 689999999999999998876653 56799999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
.+++|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.++
T Consensus 112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTC
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCC
Confidence 9999999999999999999999999975321 1222357799999999999998654 6999999999999999999
Q ss_pred eeeeee-----cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 488 RKQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~~-----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
+.+..+ .+|...|.+++|++. ++.++++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred cEEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 988877 679999999999864 348999999999999999984 4667788899999999999999999999985
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccC------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC--CCCCC
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLP 633 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~ 633 (1135)
|+.|++||+++++.+..+..+.. ..|.+++|+|+|+++++|+.||.|++||+..++.+..+.. ..+..
T Consensus 270 ----D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 270 ----DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp ----SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred ----CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 88999999999999988876533 1488999999999999999999999999999998887732 23455
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|.+++|+|+|++|++|+.|++|++|++...
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 8999999999999999999999999998765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=350.01 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=228.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.++..+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999887655 6778999999999999999 899999999999999
Q ss_pred cCCC----eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
+.++ +....+.+|.+.|.++.|+++ ..+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 355678899999999999875 359999999999999999999888999999999999999999999999
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. |+.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||+|++||+++++.+..+..+.....|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 85 88999999999999999999887 89999999999999999999999999999998888876555445799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+|++++|++|+.|+.|++||..++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998766
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=350.92 Aligned_cols=303 Identities=17% Similarity=0.242 Sum_probs=250.5
Q ss_pred eeeEEeec-CCC-CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 337 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~~~-h~~-~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+++.++. |.+ .|++++|+|+|+ +||+|+.||.|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 45677776 776 999999999998 789999999999999987653211 01136899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eeee
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 491 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~ 491 (1135)
+|+|+|++||+|+.|++|++||+..+.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23447889999999999999999 8999999999999999876 3466
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+.+|...|.+++|+|++++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999999865 8999999999999999987653 4577889999999999999999999985 8899
Q ss_pred EEEECCC---------------CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc----eEEEE---e
Q 001159 570 VEWNESE---------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTV---D 627 (1135)
Q Consensus 570 ~~wd~~~---------------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~ 627 (1135)
++||... ...+..+.+.+...|.+++|++++..+++++.|+.|++|+..... +...+ .
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 9999632 134556666444589999999999999999999999999987542 11111 1
Q ss_pred CCCCCCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCCc
Q 001159 628 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 628 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
...+...|++++|+|++ .+|++++.||+|++|+..+++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 22345589999999987 599999999999999998874
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=356.40 Aligned_cols=293 Identities=12% Similarity=0.126 Sum_probs=240.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEec------cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.|...|++++|||||+ +||+|+. ||.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 3888999999999998 7888887 7889999988776543211 1134688999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceee-eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
|++++ ++++.||+|+|||+.+++.... .....+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+|
T Consensus 104 ~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 99865 4678899999999998765432 224558999999999999999 8999999999999999999999999999
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe--cCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+++++ .++++++.||+|++||+++.+....+ ..+...+.+++|+|++ .+|++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999998754 58899999999999999988776544 3456689999999985 56667764 88899999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEEE
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 651 (1135)
+++++.+..+.+|.. .|.+++|+|++ ++|++++.|++|+|||+++++.+..+ .| ...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 33 45899999998 899999999
Q ss_pred CCCcEEEEEcCCC
Q 001159 652 SDNGIKILANSDG 664 (1135)
Q Consensus 652 ~dg~i~iwd~~~~ 664 (1135)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=344.38 Aligned_cols=297 Identities=13% Similarity=0.117 Sum_probs=238.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccc-cchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAAS-MPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
|...|.+++|||||+ +|++++ |+++++||..... |+..... ..........|...|.+++|+|++ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 456799999999998 677776 7788888742210 0000000 000000122466789999999985 68
Q ss_pred EEEeCCCeEEEEEeCCCCceeee-eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
++|+.||+|+|||+.+++.+... ..+.+|...|++++|+|+++ +|++|+.|++|++||+.+++++.++.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 34568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
++|++++. .++++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. |+.|++||+++++.
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99998754 588999999999999999988877654 445679999999965 56777764 88999999999999
Q ss_pred EEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 657 (1135)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +.+| ...|++++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999988 89999999998 578999999999999999887654 4555 45899999999886 577999999999
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.93 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=258.2
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+..++. |.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 4455565 999999999999998 789999999999999988776543 6789999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|+.|++||+++++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999999999999999
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
..+|.+++|+|++ .++++++.||.|++||+.+.+....+. .+...+..++|+|++++|++++. ++.|++||++
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998855 899999999999999999888776554 45568999999999999999875 8899999999
Q ss_pred CCeEEEEeecccCCc--eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE--
Q 001159 576 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 651 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~--v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 651 (1135)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998886522 23333446788999999999999999999999999987754 799999999999999997
Q ss_pred CCCcEEEEEcC
Q 001159 652 SDNGIKILANS 662 (1135)
Q Consensus 652 ~dg~i~iwd~~ 662 (1135)
.|++|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=338.07 Aligned_cols=248 Identities=18% Similarity=0.298 Sum_probs=226.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|++++|++|+.||.|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999886555 7788999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcC-CCCEEEEEec
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999999865 8999999999999999988744 456788999999999999 6788999985
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|+.|++||++++.....+..++...+..+.|+| ++.+|++++.|++|++||+.+++++..+.+|.. .|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEE
Confidence 889999999988877777665555788899986 678999999999999999999999999998755 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+|++++|++++.||+|++||..++
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999877
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=358.32 Aligned_cols=304 Identities=14% Similarity=0.228 Sum_probs=251.0
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEc----CCccccccCCceeecccccccchh-hhhccCCCcceEEE
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQ-NALLNDAAISVNRC 414 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v 414 (1135)
+....|.+.|++++|+|+|+.+||+|+.||.|+||++ .+++.+.... ....+. .++. .....+|...|.++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-IIAELR---HPFALSASSGKTTNQVTCL 114 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-EEEEEE---CCCCCC------CBCEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-cccccc---ccccccccccCCCCceEEE
Confidence 4444477899999999999846889999999999999 8776310000 000000 0000 00123478899999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
+|+|++++|++|+.||.|++|| .++..+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEee
Confidence 9999999999999999999999 4444443 6788999999999999999 89999999999999999999999998
Q ss_pred CCCCC---------------eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 495 GHEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 495 ~h~~~---------------v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.+... +.+++|+++ ..+++++.||.|++||+.+.+....+..|...|.+++|+|++++|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp CC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 88777 999999875 479999999999999999998888888999999999999999999999
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ++.|++||+.+++.+..+..|.. .|.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.. .|.+++
T Consensus 266 ~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~ 337 (425)
T 1r5m_A 266 SD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGR 337 (425)
T ss_dssp ET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEE
T ss_pred cC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEE
Confidence 75 88999999999999999988877 89999999999 999999999999999999999999887644 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+|++++|++++.||.|++||+.++
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999999999999999765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=355.17 Aligned_cols=341 Identities=13% Similarity=0.168 Sum_probs=283.2
Q ss_pred eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc----CCCe------eeeeecC-----
Q 001159 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG----- 495 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~----~~~~------~~~~~~~----- 495 (1135)
.+.+|++....... ....|.+.|.+++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp --------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred ccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 35678876543322 34457799999999999985 6899999999999999 8887 4555543
Q ss_pred -----CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 496 -----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 496 -----h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
|...|.+++|+|++ .+|++++.||.|++|| .+++....+..|...|.+++|+|++++|++++. ++.|+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~ 174 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDG--NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTI 174 (425)
T ss_dssp ------CBCEEEEEECTTS--SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEE
T ss_pred ccccCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEE
Confidence 68899999999854 8999999999999999 566777788889999999999999999999875 88999
Q ss_pred EEECCCCeEEEEeecccCCc---------------eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 571 EWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~---------------v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+||+.+++.+..+..+.. . +.+++|+++ ..+++++.+|.|++||+.+++.+..+..+.. .|
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~i 250 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHG--PI 250 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSS--CE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCC--ce
Confidence 999999999998887765 4 888999987 4688999999999999999998888876644 79
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 715 (1135)
.+++|+|++++|++++.|+.|++||+.++. ..
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~----------------------------------------------- 282 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQ----------------------------------------------- 282 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBS-CS-----------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCc-cc-----------------------------------------------
Confidence 999999999999999999999999976541 00
Q ss_pred CCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccc
Q 001159 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNA 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg 795 (1135)
..
T Consensus 283 -------------------------------------------------------------~~----------------- 284 (425)
T 1r5m_A 283 -------------------------------------------------------------NC----------------- 284 (425)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------eE-----------------
Confidence 00
Q ss_pred eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccE
Q 001159 796 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 874 (1135)
Q Consensus 796 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~ 874 (1135)
+.. | ...+.+++|+|++ ++++++ |+.|++||+.+++.
T Consensus 285 --------------------------------------~~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 285 --------------------------------------FYG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp --------------------------------------ECC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE
T ss_pred --------------------------------------ecC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE
Confidence 000 4 6788899999999 888887 89999999999999
Q ss_pred EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--------------------eeEEecCcCC--CeEEEE
Q 001159 875 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLA 932 (1135)
Q Consensus 875 ~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~i~~l~ 932 (1135)
+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++
T Consensus 323 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 323 LALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred eEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 999999999999999999 89999999999999999999888 8899999977 999999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCC
Q 001159 933 FSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 933 ~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
|+|++++|++++.||.|++|+++
T Consensus 402 ~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999986
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=350.33 Aligned_cols=320 Identities=15% Similarity=0.187 Sum_probs=227.7
Q ss_pred ccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccc
Q 001159 735 DVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 814 (1135)
Q Consensus 735 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 814 (1135)
+..++....+.....|+++... ...|...| .+++|+|||++|++++.|. +++||-
T Consensus 16 ~~~~~~~~g~~~~~~w~~p~~~-----------p~~H~~~V-~~v~fSpDG~~las~s~d~-~~~wd~------------ 70 (357)
T 4g56_B 16 ENLYFQSNGSSKGSAWGRPVTA-----------PACMEVQI-GAVRYRRDGALLLAASSLS-SRTWGG------------ 70 (357)
T ss_dssp -----------------------------------CCCSEE-EEEEECSSSCEEEEEECSS-SSSCCE------------
T ss_pred cceEEecCCCccccccCCCCCC-----------cccccCCE-EEEEECCCCCEEEEEcCCC-CccccC------------
Confidence 3344445555777888876311 12378888 9999999999999988753 345542
Q ss_pred ccccCeeecCCCCcceecc-CCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEE----EEeCCCCCeEEEE
Q 001159 815 ANVAPQLWQPPSGTLMTND-INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLA 889 (1135)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~-~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~h~~~v~~l~ 889 (1135)
.+.+|+..++...... .....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++
T Consensus 71 ---~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 71 ---SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp ---EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred ---eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 1344454444322111 111126 888999999999988776669999999999876543 3447999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCC-eEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 890 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
|+| ++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|++++. ++++++.|++|++||+.+++...... .
T Consensus 147 ~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~ 222 (357)
T 4g56_B 147 VFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---F 222 (357)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---C
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---e
Confidence 999 899999999999999999999999999999999999999999985 78999999999999999877443221 1
Q ss_pred CCCCCCCCCceEEEECCCC-cEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCC-CEEEEEeCCCeEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGV 1044 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg-~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~~~~~dg~I~v 1044 (1135)
..+. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++|++|+.||+|+|
T Consensus 223 ~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 223 CASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp TTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred cccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 1222 568999999985 56777 57899999999 66666555 3458899999999997 57999999999999
Q ss_pred EECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1045 FDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1045 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
||+++++.+..+. | ...+.+++|+|.++.+|+||+.||+|++|++.+..
T Consensus 297 wd~~~~~~~~~~~-H----------~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFSEVFRDLS-H----------RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSCEEEEECC-C----------SSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCCcEeEECC-C----------CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999998876542 2 24566899999888999999999999999997644
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.31 Aligned_cols=310 Identities=15% Similarity=0.245 Sum_probs=253.0
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.++...+.|.+.|++++|||||+ +||+|+ ++.++||++.+++.+.......-... ............+...|.+++|
T Consensus 55 ~~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~ 131 (393)
T 1erj_A 55 VELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCF 131 (393)
T ss_dssp EEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEE
T ss_pred ceeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEE
Confidence 34566677999999999999998 678876 78999999998876542100000000 0000000111234456999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
+|+|++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||++++++...+. +
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~ 205 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-I 205 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence 9999999999999999999999876544 7889999999999999999 89999999999999999999888876 6
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-------cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
...+.+++|+|. ++.++++|+.||.|++||++++.....+ ..|...|.+++|+|++++|++++. |+.|
T Consensus 206 ~~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v 280 (393)
T 1erj_A 206 EDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSV 280 (393)
T ss_dssp SSCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEE
T ss_pred CCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEE
Confidence 678999999884 3489999999999999999988776655 567889999999999999999985 8899
Q ss_pred EEEECCCC------------eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 570 VEWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 570 ~~wd~~~~------------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
++||+++. .....+.+|.. .|.+++|++++.+|++++.|+.|++||+.+++++..+.+|.. .|.+
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~ 357 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVIS 357 (393)
T ss_dssp EEEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEE
Confidence 99999753 34567778877 899999999999999999999999999999999999987755 7999
Q ss_pred EEEcC------CCCEEEEEECCCcEEEEEcCC
Q 001159 638 LRFNK------EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 638 ~~~~~------~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++|++ ++.+|++|+.||+|+||++..
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99876 688999999999999999854
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=342.99 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=226.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|...|++++|+|++++||+|+.||+|++||..++.... .+..|...|.+++|+|++. +|++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999998876554 6678999999999999999 899999999999999
Q ss_pred cCCC------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC--CCCE
Q 001159 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 555 (1135)
Q Consensus 484 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~ 555 (1135)
+... .....+.+|...|.+++|+|++ ..|++++.|++|++||+++++....+..|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 3445677899999999998865 7999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
|++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||++.++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999985 88999999999999999999887 8999999999999999999999999999999888877765554578
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+++|+|++.+|++|+.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999999776
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=337.64 Aligned_cols=297 Identities=15% Similarity=0.206 Sum_probs=234.4
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhc-c-CCCcceEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL-N-DAAISVNR 413 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~ 413 (1135)
.+++.++. |.++|++++|+|+ +||+|+.||.|+|||+.++..... ..+ . +|...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEE
Confidence 34566777 9999999999998 689999999999999987532110 012 2 39999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCC----ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--- 486 (1135)
++|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999986432 1233446789999999999999999 899999999999999943
Q ss_pred -CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC--CceeEecCCCCcEEEEEEcCC--CCEEEEEec
Q 001159 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGT 561 (1135)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~ 561 (1135)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... +....+.+|...|.+++|+|+ +.+|++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 25677889999999999999865 89999999999999998766 456678899999999999998 678898875
Q ss_pred CCCCCCeEEEEECCCC--------eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce--EEEEeCCCC
Q 001159 562 SKEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG 631 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 631 (1135)
|+.|++||+.++ .....+.+.+...|.+++|++++ +|++++.||.|++|+..+++. .... ...+
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 889999998754 34555655233389999999664 899999999999999987742 3222 1223
Q ss_pred CC-CcceEEEcC--CCCEEEEEECCCcEEEEEcCC
Q 001159 632 LP-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~-~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.. .|.+++|+| ++++|++|+.||+|++|++.+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 689999999 789999999999999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=333.59 Aligned_cols=247 Identities=19% Similarity=0.286 Sum_probs=221.4
Q ss_pred ccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEeCCCCc--eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~-~~las~~~dg~i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 77999999999999965 8999999999999999975432 123447889999999999999999 899999999999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC------CC
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------GT 554 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~------~~ 554 (1135)
+||+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++ ......+..|...|.+++|+|. +.
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998865 899999999999999996 4566778889999999999985 44
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888875 88999999999999999999987 8999999999999999999999999999999999888754 36
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|.+++|+|++.++++++.+ .+++|++...
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 9999999999999988765 6999998765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=353.22 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=222.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999886554 7789999999999999999 899999999999999
Q ss_pred cCCCe-------eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-----cCCCCcEEEEEEcC
Q 001159 484 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 551 (1135)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.+++....+ ..|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999998643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 552 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 552 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+++++++++. |+.|++||++ .+..+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8889999985 8899999998 5678888999887 8999999999999999999999999999999998888654
Q ss_pred CC-----CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 630 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 630 ~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.. ...|.+++|+|+|++|++|+.||.|++||..++
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 32 224899999999999999999999999998766
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=338.35 Aligned_cols=300 Identities=16% Similarity=0.283 Sum_probs=243.9
Q ss_pred eeEEeec-CCCCeeEEEE-----ec-CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcc
Q 001159 338 TVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~-----sp-~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+..++. |.+.|++++| +| +++ +||+|+.|++|+|||+.+++.... ...+...+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCc
Confidence 4556666 9999999999 77 887 799999999999999976543210 00111236789999
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.... .
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~-~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGEC-K 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCE-E
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCc-e
Confidence 9999999999999999999999999999987655 7789999999999999999 89999999999999987443 3
Q ss_pred eee---cCCCCCeeEEEeeccCC--------ccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 491 YTF---EGHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 491 ~~~---~~h~~~v~~i~~~~~~~--------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
..+ .+|...|.+++|+|... +.++++++.||+|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 333 37899999999998642 268999999999999994 445566788899999999999999999999
Q ss_pred ecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE--EEeCC-------
Q 001159 560 GTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------- 629 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------- 629 (1135)
+. |+.|++||+. .......+.. .. .|.+++|+|++.+++++ .|+.|++|++.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred cC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 85 8899999994 4444444432 22 69999999999877655 57889999998876544 33311
Q ss_pred --CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 630 --GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 630 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33457899999999999999999999999998765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=360.42 Aligned_cols=292 Identities=14% Similarity=0.262 Sum_probs=249.6
Q ss_pred CCCeeEEEEecCCCeEEEEE----------eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
...|.+++|+|+|+.++|+| +.||.|+|||+.++..... . ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34789999999997789999 8899999999998763210 0 0235889999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecC-CCeEEEEEEcCCCcEEEEEcCCCe-----
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR----- 488 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~----- 488 (1135)
|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1133367889999999999998 66 89999999999999999886
Q ss_pred -eee---eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC------CCcEEEEEEcCCC-CEEE
Q 001159 489 -KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TRLF 557 (1135)
Q Consensus 489 -~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~-~~l~ 557 (1135)
... .+.+|...|.+++|+|++ +.++++++.||.|++||+++.+....+..+ ...|.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 346799999999999863 379999999999999999998888877776 6789999999998 5777
Q ss_pred EEecCCCCCC---eEEEEECCCC-eEEEEee-cccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 558 SCGTSKEGES---HLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 558 ~~~~~~~~~~---~i~~wd~~~~-~~~~~~~-~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
+++. ++ .|++||++++ ..+..+. +|.. .|.+++|+| ++++|++++.||.|++||+.+++.+..+..|..
T Consensus 232 ~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 306 (416)
T 2pm9_A 232 TATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306 (416)
T ss_dssp EEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred EEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence 7764 44 8999999986 6677777 7776 899999999 899999999999999999999999999987754
Q ss_pred CCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCC
Q 001159 632 LPASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 632 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|.+++|+|++ .+|++++.|+.|++|++.+.
T Consensus 307 --~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 307 --WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp --CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred --ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 79999999998 89999999999999999876
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=339.45 Aligned_cols=294 Identities=13% Similarity=0.147 Sum_probs=225.7
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCc-ceeccCCCCCCCCCceEEEEe
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-LMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
+...| .+++|+|||++|++++ |+++++|+.... +|+..... ..........| ...|.+++|
T Consensus 29 ~~~~v-~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQL-EAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQT-EAGVADLTW 90 (344)
T ss_dssp CCSEE-EEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEE-SSCEEEEEE
T ss_pred ccCCE-EEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeecc-CCCEEEEEE
Confidence 44567 9999999999776555 888999974321 11111000 00000000113 678999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCccEEEE----EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMTFKVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~~~~~~~----~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
+||+. +++|+ ||+|+|||+.+++.+.. +.+|.+.|++++|+| ++++|++|+.|++|++||+.+++++..+.+|
T Consensus 91 s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 168 (344)
T 4gqb_B 91 VGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168 (344)
T ss_dssp ETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred eCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence 99965 55666 99999999998876544 458999999999999 8999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCC-eEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-cEEEE-EecCeEEEE
Q 001159 925 QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLV-VHESQISVY 1001 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~-~~d~~v~vw 1001 (1135)
.+.|++++|++++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|++ ++|++ +.|+.|++|
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEE
Confidence 99999999999985 789999999999999998875432211 1111 457899999965 56777 478999999
Q ss_pred ec-CCceeeccCCCCCCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1002 DS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1002 d~-~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
|+ +++++..+ .+|...|++++|+||+ ++|++|+.||+|+|||+.+++++. +..| ...+.+++|+
T Consensus 243 d~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H----------~~~V~~v~~s 308 (344)
T 4gqb_B 243 DTKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH----------RDFVRDATWS 308 (344)
T ss_dssp ESCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC----------SSCEEEEEEC
T ss_pred ECCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC----------CCCEEEEEEe
Confidence 99 67766665 3568999999999998 579999999999999999998654 3333 2456789999
Q ss_pred CCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1080 PSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1080 ~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
|++..+|+||+.||+|++|++.+..
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9666788899999999999997643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=380.16 Aligned_cols=520 Identities=11% Similarity=0.050 Sum_probs=378.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...+.+++|||+ +++ ..+ ++.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~ia-f~~-~~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RII-FVC-CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EEE-EEE-TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EEE-EEE-CCcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 444 444 3799999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEeCCCCceeeeeEeecccCCE-------EEEEEecCCCeEEEEEEcCC------CcEEEEEcC
Q 001159 425 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1135)
Q Consensus 425 s~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~v~~s~d~~~~~l~s~~~d------~~i~iwd~~ 485 (1135)
+++.+ ..|++||+.+++ .+ .+..|...+ .+++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 379999998864 22 567888888 9999999998 77777754 468888888
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc------------CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 553 (1135)
+++.. .+..+ ....++|+| | ++++++. +...++|..........+..|...+.++.|+++
T Consensus 143 ~g~~~-~l~~~--~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLG--PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSC--SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCC--CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77754 33333 234667887 4 7888753 345677765544555666888899999999988
Q ss_pred CEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC--
Q 001159 554 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 630 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 630 (1135)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|||+.++++ .++.|++|++...+ +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 255666776542 44445555554 35667999999998887 48999999995443 44444321
Q ss_pred -------CCCCcceEEEc-CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 631 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 631 -------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+...+.+++|+ |||+.|++++ ++.+.+|+..++. ... +..
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~~----------------------------- 334 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VPE----------------------------- 334 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CSC-----------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-ccC-----------------------------
Confidence 11258899999 9999999888 7799999886652 110 100
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccccc-ceEEEEEE
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVVRLIY 781 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 781 (1135)
+.. .+ ..++|
T Consensus 335 --------------------------------------------------------------------~~~~~~-~~~~~ 345 (1045)
T 1k32_A 335 --------------------------------------------------------------------PLRIRY-VRRGG 345 (1045)
T ss_dssp --------------------------------------------------------------------CSCEEE-EEECS
T ss_pred --------------------------------------------------------------------CCcceE-EeeeE
Confidence 122 34 78889
Q ss_pred ecCCcceeEecccceee-eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe
Q 001159 782 TNSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 860 (1135)
Q Consensus 782 s~dg~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~ 860 (1135)
+ ||+.|+.++.++.+. +|++. ++.... +.+ | ...+..++|||||++|++++
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEE
T ss_pred c-CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEEC
Confidence 9 999888887776666 66543 222222 112 5 78899999999999999998
Q ss_pred -CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC----------cEEEEEcccceeeEEecCcCCCeE
Q 001159 861 -GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRIT 929 (1135)
Q Consensus 861 -dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~i~ 929 (1135)
++.|++||+.+++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDY 475 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEE
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccC
Confidence 78999999999998888888999999999999 899998887654 89999999888 677888989999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceece-----e---------------------------------eeecCCCC
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS-----R---------------------------------FIQAPAGR 971 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~-----~---------------------------------~~~~~~~~ 971 (1135)
+++|+|||++|++++.++...+|+......... . .+.....+
T Consensus 476 ~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~ 555 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD 555 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC
T ss_pred CceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC
Confidence 999999999999999888888887653322000 0 00001111
Q ss_pred CCCCCCceEEEECCCCcEEEE------------E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe
Q 001159 972 QSPLVGETKVQFHNDQTHLLV------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1037 (1135)
Q Consensus 972 ~~~~~~v~~~~~s~dg~~l~~------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~ 1037 (1135)
...+..++|+|||+++++ + ....|.+||+.......+. ..+.+++|||||++|++++
T Consensus 556 ---~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~ 626 (1045)
T 1k32_A 556 ---PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRK 626 (1045)
T ss_dssp ---CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEE
T ss_pred ---CCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEc
Confidence 145778999999998875 1 2456888888433333332 4578999999999999987
Q ss_pred CCCeEEEEECCCce
Q 001159 1038 CDGAIGVFDAETLR 1051 (1135)
Q Consensus 1038 ~dg~I~vwd~~~~~ 1051 (1135)
.+ .|++||+.+++
T Consensus 627 ~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 627 DD-GKIYTFPLEKP 639 (1045)
T ss_dssp TT-SCEEEEESSCT
T ss_pred CC-cEEEEeCccCc
Confidence 66 89999999887
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=335.67 Aligned_cols=316 Identities=15% Similarity=0.197 Sum_probs=242.7
Q ss_pred eeeeEeecccC-CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee---eecCCCCCeeEEEeeccCCccEEEEEEc
Q 001159 444 RQHLEIDAHVG-GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---TFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1135)
Q Consensus 444 ~~~~~l~~h~~-~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~ 519 (1135)
.....+.+|.. .|++++|+|+|+ +|++|+.|++|+|||+.++.... ...+|...|.+++|+|++ .+|++|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~--~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT--LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--NYLASASF 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS--CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--SEEEEEET
T ss_pred EEeeeecCCCCCcEEEEEECCCCC--EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--CEEEEEEC
Confidence 34447789988 999999999999 89999999999999998886432 236899999999999855 89999999
Q ss_pred CCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe---EEEEeecccCCceeEE
Q 001159 520 DGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 520 dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~i 594 (1135)
|++|++||+.... ....+.+|...|.+++|+|++++|++++. |+.|++||+.++. .+..+.+|.. .|.++
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~ 156 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR----DKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHV 156 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEECTTSCEEEEEEECCCCS-CEEEE
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC----CCeEEEEECCCCCCeEEEEEecCcCC-CeEEE
Confidence 9999999988764 35678889999999999999999999985 8899999998763 4567777777 89999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCceE--EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcc
Q 001159 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 672 (1135)
+|+|++++|++++.|+.|++||..+++.. ..+..| ...|.+++|+|++++|++++.|++|++|+......
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~------ 228 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN------ 228 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC------
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC------
Confidence 99999999999999999999999887644 455555 45899999999999999999999999999643310
Q ss_pred ccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccccccc
Q 001159 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~ 752 (1135)
...+.
T Consensus 229 --~~~~~------------------------------------------------------------------------- 233 (345)
T 3fm0_A 229 --EQGVA------------------------------------------------------------------------- 233 (345)
T ss_dssp --TTCCC-------------------------------------------------------------------------
T ss_pred --Cccce-------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceec
Q 001159 753 PDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
.....+....+...
T Consensus 234 -------------------------~~~~~~~~~~~~~~----------------------------------------- 247 (345)
T 3fm0_A 234 -------------------------CSGSDPSWKCICTL----------------------------------------- 247 (345)
T ss_dssp -------------------------CC---CEEEEEEEE-----------------------------------------
T ss_pred -------------------------eeccCCccceeEEe-----------------------------------------
Confidence 00000000000000
Q ss_pred cCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc---------EEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 001159 833 DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK---------VMTMFMSPPPAATFLAFHPQDNNIIAIGM 902 (1135)
Q Consensus 833 ~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~---------~~~~~~~h~~~v~~l~~sp~~~~~lasg~ 902 (1135)
. ..| ...|.+++|+|++..|++++ |+.|++|+..... ......+|...|++++|+|++..+||+|+
T Consensus 248 -~--~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 248 -S--GFH-SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp -C--SSC-SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred -c--CCC-CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 0 014 67788888888888888887 8888888876542 12233579999999999994446999999
Q ss_pred CCCcEEEEEcccceeeEEe
Q 001159 903 EDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 903 ~dg~v~iwd~~~~~~~~~l 921 (1135)
.||+|++|++.+++....+
T Consensus 324 ~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 324 DDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTSCEEEEEECC-------
T ss_pred CCCcEEEEEecCCCCcccc
Confidence 9999999999988765544
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=332.42 Aligned_cols=305 Identities=21% Similarity=0.289 Sum_probs=261.8
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
...++..+|. |.+.|++++|+|++..+||||+.||+|+|||+.+++.... .+...+.+|...|.+
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~ 91 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSD 91 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEE
Confidence 4456677888 9999999999998544899999999999999987654321 112236789999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-ee
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YT 492 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~ 492 (1135)
++|+|+|++|++++.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... ..
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEEC
T ss_pred EEECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEE
Confidence 9999999999999999999999999875444 5567888999999999999 7999999999999998766543 45
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
+.+|...+..++|++.....++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++|
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iw 242 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLW 242 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEE
Confidence 678999999999998877788999999999999999999998999999999999999999999999985 8899999
Q ss_pred ECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-------CCCCCcceEEEcCCCC
Q 001159 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-------GGLPASPRLRFNKEGS 645 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~ 645 (1135)
|+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|+++
T Consensus 243 d~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 243 DLNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp ETTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred EeccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 999999999888764 699999999875 556667999999999998877766532 3455799999999999
Q ss_pred EEEEEECCCcEEEEEcCCCc
Q 001159 646 LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~ 665 (1135)
+|++|+.||.|+|||+.+|.
T Consensus 320 ~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999883
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=359.61 Aligned_cols=338 Identities=12% Similarity=0.134 Sum_probs=270.3
Q ss_pred CCcceEEEEEcCCCC-eEEEE----------eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC
Q 001159 407 AAISVNRCVWGPDGL-MLGVA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spd~~-~las~----------~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 475 (1135)
+...|.+++|+|+|+ +||+| +.|+.|++||+.++........+ .|...|.+++|+|+++ +|++|+.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEcc
Confidence 345688999999997 99999 88999999999987543222233 5889999999999999 8999999
Q ss_pred CCcEEEEEcCC----CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC------ceeE---ecCCCC
Q 001159 476 DKMIKVWDVVA----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVD---YDAPGN 542 (1135)
Q Consensus 476 d~~i~iwd~~~----~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~---~~~~~~ 542 (1135)
|+.|++||+.+ .+.+..+.+|...|.+++|+|++ +.+|++++.||.|++||+.+.+ .... ...|..
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 99999999987 45788899999999999999862 3799999999999999998876 3332 355677
Q ss_pred cEEEEEEcCC-CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 543 WCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 543 ~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
.|.+++|+|+ +.++++++. ++.|++||+++++.+..+..+...
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~-------------------------------- 210 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN-------------------------------- 210 (416)
T ss_dssp CCCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS--------------------------------
T ss_pred CeeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc--------------------------------
Confidence 8888888887 566777653 667888887777766665544320
Q ss_pred eEEEEeCCCCCCCcceEEEcCCC-CEEEEEECCC---cEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCC
Q 001159 622 MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDN---GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 697 (1135)
. .+...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 -----~--~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~--------------------------- 256 (416)
T 2pm9_A 211 -----S--GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT--------------------------- 256 (416)
T ss_dssp -----S--CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---------------------------
T ss_pred -----c--ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---------------------------
Confidence 1 113468889999986 6888888888 8999988654100000
Q ss_pred CccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEE
Q 001159 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVV 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEE
Q 001159 778 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYV 856 (1135)
Q Consensus 778 ~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~l 856 (1135)
+. ..| ...|.+++|+| ++++|
T Consensus 257 --------------------------------------------------------~~-~~~-~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 257 --------------------------------------------------------LN-QGH-QKGILSLDWCHQDEHLL 278 (416)
T ss_dssp --------------------------------------------------------CC-SCC-SSCEEEEEECSSCSSCE
T ss_pred --------------------------------------------------------ee-cCc-cCceeEEEeCCCCCCeE
Confidence 00 015 77889999999 89999
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEcccceeeEEec------------
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN-NIIAIGMEDSSVQIYNVRVDEVKTKLK------------ 922 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~~lasg~~dg~v~iwd~~~~~~~~~l~------------ 922 (1135)
++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+.+++......
T Consensus 279 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 279 LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 9998 89999999999999999999999999999999 66 899999999999999998765432221
Q ss_pred -----------------------CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 923 -----------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 923 -----------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
.|..++++++|+|||++|++++.|++|+||++.+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16778889999999999999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=328.90 Aligned_cols=319 Identities=13% Similarity=0.173 Sum_probs=270.4
Q ss_pred cCCcceeeecCCCCCCccccCCC--------cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccc
Q 001159 312 TGQSDEVSFAGVAHTPNVYSQDD--------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (1135)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~~d~--------~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~ 383 (1135)
.+.+.+++++|+|+.++....+. .....+..+.|.+.|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 44678899999999876543222 3345566777999999999999998 678888 9999999998876433
Q ss_pred cCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec
Q 001159 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463 (1135)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~ 463 (1135)
. +. .....+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~--~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 P--VS------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp C--SE------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred e--ee------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 2 00 0012368999999999999999999999999999999987632 2336778999999999999
Q ss_pred CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc
Q 001159 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (1135)
Q Consensus 464 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 543 (1135)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.||.|++||+++.+....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998855 899999999999999999887766654 5678
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .|.+++|+|+++++++++.||.|++||+.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999875 788999999988764 5666666 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
..... ...|.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 65543 337999999999999999999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=327.54 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=226.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|...|++++|+|++++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999876554 6789999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++.+....+..|...|.+++|+|+++++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 169 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-- 169 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 99999999999999999999999865 89999999999999999999988899999999999999999999999985
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc-C
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-K 642 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~ 642 (1135)
++.|++||+++++.+..+..+....+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++ +
T Consensus 170 --d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 170 --DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp --TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred --CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 8899999999999888887666558999999999999999999999999999999999998877553333334444 6
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.+|++|+.||.|++||+.++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC
T ss_pred CCcEEEEECCCCEEEEEECCCc
Confidence 8899999999999999999876
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=335.66 Aligned_cols=286 Identities=13% Similarity=0.170 Sum_probs=245.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.++|.+++|+|||+ +++++..++.+.+|.......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 456899999999998 566676666666665443322211 346999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEee--cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe--eeeeecCCCCCe
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 500 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 500 (1135)
+++ ||.|++||+.++........+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876555444444 7999999999999999 89999999999999999887 667788899999
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++ .++++++.||.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998854 89999999999999999998888888889999999999999999999875 889999999999988
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88753 33 7999999999999999999999999999988754 34444 44799999999999999999999999999
Q ss_pred cCCC
Q 001159 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=356.47 Aligned_cols=275 Identities=10% Similarity=0.061 Sum_probs=214.6
Q ss_pred ceeeEEeecCCCCeeEEEEecCC-C-------eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCC
Q 001159 336 TKTVVRTLNQGSNVMSMDFHPQQ-Q-------TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 336 ~~~~~~~~~h~~~V~~v~~sp~g-~-------~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+.....++.+.+.|++|+|+|++ . .+||+|+.++. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~---------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D---------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------
Confidence 45556677788999999999987 1 37888875431 0
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCcee-eeeEeecccCCEEEEEEecC------CCeEEEEEEcCCCcEE
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d------~~~~~l~s~~~d~~i~ 480 (1135)
-..+|+++.||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+ +. +||+++.||+|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 0136899999999999999999998876422 12246678899999999997 45 899999999999
Q ss_pred EEEcCCCee-----------eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEE-
Q 001159 481 VWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM- 547 (1135)
Q Consensus 481 iwd~~~~~~-----------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~- 547 (1135)
+||+.++.. ...+.+|...|++++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 2467889999999999864 4899999999999999997644 45688899999999
Q ss_pred -EEcCCC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC-CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 548 -AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 548 -~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+|++++ .+|++++. |++|++||+++++.+..+.+|.. ..|.+++|+|+++.+++++.|++|++||++++..+.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 578888 88999985 89999999999888777777654 247889999999999999999999999999999888
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.+.+|.. .|++++|+|++++|++|+.||+|++||...
T Consensus 392 ~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 8877644 899999999999999999999999999743
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=326.89 Aligned_cols=205 Identities=17% Similarity=0.282 Sum_probs=178.2
Q ss_pred eeEeecccCCEEEEEE-----ec-CCCeEEEEEEcCCCcEEEEEcCCC-------eeeeeecCCCCCeeEEEeeccCCcc
Q 001159 446 HLEIDAHVGGVNDIAF-----AH-PNKQLCIVTCGDDKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1135)
...+.+|.+.|++++| ++ +++ +|+||+.|++|++||+.++ .....+.+|...|.+++|+|++ .
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--C 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--T
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--C
Confidence 3478899999999999 66 787 8999999999999998753 4567889999999999998865 8
Q ss_pred EEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee---cccCC
Q 001159 513 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFRKR 589 (1135)
Q Consensus 513 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~~~ 589 (1135)
++++++.|++|++||+++++....+..|...|.+++|+|++++|++++. |+.|++||+... ...... +|..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~~- 163 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA----EREIKLWNILGE-CKFSSAEKENHSD- 163 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET----TSCEEEEESSSC-EEEECCTTTSCSS-
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC----CCEEEEEeccCC-ceeeeecccCCCc-
Confidence 9999999999999999999998899999999999999999999999985 889999999843 333333 4544
Q ss_pred ceeEEEecCCC----------CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 590 SLGVVQFDTTR----------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 590 ~v~~i~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
.|.+++|+|++ .++++++.||.|++||. ..+....+..|.. .|.+++|+|++++|++|+.||.|++|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS--CEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc--cceEEEECCCCCEEEEEcCCCeEEEE
Confidence 79999999987 78999999999999994 4666777776644 79999999999999999999999999
Q ss_pred EcCC
Q 001159 660 ANSD 663 (1135)
Q Consensus 660 d~~~ 663 (1135)
|+.+
T Consensus 241 d~~~ 244 (343)
T 2xzm_R 241 DILN 244 (343)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9843
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=344.12 Aligned_cols=345 Identities=11% Similarity=0.106 Sum_probs=282.5
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345679999999999999999999999998865543 34445 4455557899998 89999999999999999999
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 999989999999999999865 89999999999999999999999999999999999999999999999985 889
Q ss_pred EEEEECCCCeEEEEeeccc--CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE
Q 001159 569 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 646 (1135)
|++||+++++.+..+..+. ...+.++++.+.+... .... +...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~--~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEI--STSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGG--CCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeec--ccCcccceEEcCCCCE
Confidence 9999999999999988643 2267777776553221 0111 1236788999999999
Q ss_pred EEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|++++.||.|++||+.++....
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~---------------------------------------------------------- 283 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTI---------------------------------------------------------- 283 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEE----------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeE----------------------------------------------------------
Confidence 9999999999999986551000
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
.+
T Consensus 284 -----------------------------------------------------~~------------------------- 285 (420)
T 3vl1_A 284 -----------------------------------------------------QL------------------------- 285 (420)
T ss_dssp -----------------------------------------------------EE-------------------------
T ss_pred -----------------------------------------------------Ec-------------------------
Confidence 00
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC-EEEEEe-CCeEEEEECCCccE-EEEEeC-CC
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PP 882 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-h~ 882 (1135)
.. .| ...+.+++|+|+++ +|++|+ ||.|++||+.+++. +..+.+ |.
T Consensus 286 ---------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 286 ---------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp ---------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT
T ss_pred ---------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC
Confidence 00 14 77899999999998 999998 89999999998754 677776 66
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---------eeeEEecCcCCCeEEEEEcCCCC---eEEEEcCCCcEE
Q 001159 883 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLC 950 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~ 950 (1135)
..|.++.++ ++++|++++.||.|++|++... .....+.+|.+.|.+++|+|+++ .+++++.+|.+.
T Consensus 336 ~~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~ 413 (420)
T 3vl1_A 336 TPINNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCA 413 (420)
T ss_dssp SCEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEE
T ss_pred CCceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEE
Confidence 778888665 5789999999999999998863 22334668899999999999999 788888899999
Q ss_pred EEeCCC
Q 001159 951 MWSIDK 956 (1135)
Q Consensus 951 iwd~~~ 956 (1135)
+|+++.
T Consensus 414 ~~~~~~ 419 (420)
T 3vl1_A 414 LYNLSN 419 (420)
T ss_dssp EEESCC
T ss_pred EEeccC
Confidence 999874
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=365.61 Aligned_cols=530 Identities=10% Similarity=0.045 Sum_probs=376.1
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC------CCcEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------DKMIK 480 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~------d~~i~ 480 (1135)
+...+.+++||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 556799999995 58888776 68999999886532 5678999999999999999 6676643 34899
Q ss_pred EEEcCCCeeeeeecCCCCCe-------eEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPV-------YSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v-------~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
+||+.+++ ...+..|...+ .+++|+|++ +++++++.+ ..|.+||+..+.... +..+. ...+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg--~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~--~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDG--NLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGP--ATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECTTC--CEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCS--CSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCCCC--EEEEEECCcCCCcccceEEEEECCCCCeEE-ecCCC--ccee
Confidence 99988877 57788888888 899999865 677777754 357777776654332 22222 2356
Q ss_pred EEcCCCCEEEEEecCCC--------CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 548 AYSADGTRLFSCGTSKE--------GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+|+| | ++++++.+.+ ++....+|....+.....+.+|.. .+.++.|+++ ..+++++.++.+.+|.+..
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~ 233 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDL 233 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEET
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeC
Confidence 7999 8 7777642111 123345554333344455677766 8999999988 5666777889999998653
Q ss_pred -CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCC
Q 001159 620 -MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 620 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 698 (1135)
+.....+..+. .+...+|+|||+.|+++. ++.|++|+.... .+. .+..+...
T Consensus 234 ~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~-~l~~~~~~--------------------- 286 (1045)
T 1k32_A 234 DGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIE-KIEIGDLE--------------------- 286 (1045)
T ss_dssp TSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEE-ECCCCCCC---------------------
T ss_pred CCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-Eee-eeccCccc---------------------
Confidence 44445554443 367789999999998874 789999998332 111 11110000
Q ss_pred ccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEE
Q 001159 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVR 778 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 778 (1135)
..... ..+...+ ..
T Consensus 287 ------------------------------------------------------------~~~~~-----~~~~~~v-~~ 300 (1045)
T 1k32_A 287 ------------------------------------------------------------SPEDR-----IISIPSK-FA 300 (1045)
T ss_dssp ------------------------------------------------------------BCCSE-----EEECGGG-GE
T ss_pred ------------------------------------------------------------ccccc-----ccccccc-ce
Confidence 00000 0134456 88
Q ss_pred EEEe-cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC-ceEEEEeecCCCEE
Q 001159 779 LIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE-SAACIALSKNDSYV 856 (1135)
Q Consensus 779 ~~~s-~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~i~~l~~s~dg~~l 856 (1135)
++|+ |||+.|++++ ++.+.+|++. ++.... +.. | .. .+..++|+ ||+.+
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~----------------------~~~~~~--~~~--~-~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVS----------------------GTYVLK--VPE--P-LRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTT----------------------SSBEEE--CSC--C-SCEEEEEECSS-SEEEE
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCC----------------------CCceEE--ccC--C-CcceEEeeeEc-CCCeE
Confidence 9999 9999888877 7778877543 222221 111 4 55 89999999 99999
Q ss_pred EEEe-CCeEE-EEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS-GGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~-dg~i~-vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++++ ++.+. +||+.+++... +.+|...+.+++||| ||++||+++.++.|++||+.+++....+.+|.+.+.+++||
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred EEEECCCceEEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 9998 57788 99998876544 447888999999999 89999999999999999999999888887899999999999
Q ss_pred CCCCeEEEEcCCC----------cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec
Q 001159 935 PTLNALVSSGADA----------QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1003 (1135)
Q Consensus 935 ~d~~~l~s~~~D~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 1003 (1135)
|||++|++++.++ .|++||+.+++. .....+. ..+..++|+|||++|++ +.++...+|+.
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC---cccCCceEcCCCCEEEEEecccCCcCcch
Confidence 9999999887654 899999998752 1222222 45778999999999988 45555555654
Q ss_pred -CCce-------e---------------------------------eccCCCCCCCCCEEEEEEeeCCCEEEE-------
Q 001159 1004 -KLEC-------S---------------------------------RSWSPKDALPAPISSAIYSCDGLLVYA------- 1035 (1135)
Q Consensus 1004 -~~~~-------~---------------------------------~~~~~~~~h~~~i~~~~~s~d~~~l~~------- 1035 (1135)
.... + ........|...+..++|+|||+++++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~ 580 (1045)
T 1k32_A 501 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 580 (1045)
T ss_dssp SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred hccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcc
Confidence 1111 0 000111234677899999999998775
Q ss_pred ------EeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1036 ------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1036 ------~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
......|.+||+.+++...-. ..+.++.++| ||++|++++.| .|++||+.+++
T Consensus 581 ~~~~~~~~~~~~l~~~d~~~~~~~~l~--------------~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 581 AAYYQGAPEKGVLLKYDVKTRKVTEVK--------------NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHHHCCCCCEEEEEEETTTCCEEEEE--------------EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccccCCCceEEEEECCCCcEEEee--------------cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 123557899999988753221 1234678999 88999998876 89999998766
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=352.86 Aligned_cols=357 Identities=9% Similarity=0.089 Sum_probs=268.6
Q ss_pred cCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCC---CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 405 ~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
.+|.+.|++++|+| ++++||+|+.||+|++||+.+ +........+ +|...|.+++|+|++. +|++|+.|++|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 68999999999999 999999999999999999987 5433333333 5999999999999999 899999999999
Q ss_pred EEEcC---CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE--EcCCCCE
Q 001159 481 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 555 (1135)
Q Consensus 481 iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~ 555 (1135)
+||+. +++.+..+.+| .+..+.++|.. +...+.++. +++++.+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777776655 67777776632 122334444 6789999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeec--ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++++.||.|++||+++++++..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999975 88999999999999999998 555 89999999999999999999999999999999998886322 23
Q ss_pred CcceEEEc----CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCC
Q 001159 634 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 634 ~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 709 (1135)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.+|...+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~------------------------------- 306 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQP------------------------------- 306 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCC-------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCC-------------------------------
Confidence 78999555 56889999999999999999887 4444444433211
Q ss_pred CCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee
Q 001159 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~ 789 (1135)
..+.|+|+++.+.
T Consensus 307 -------------------------------------------------------------------~~~~~~~~~~~l~ 319 (437)
T 3gre_A 307 -------------------------------------------------------------------SMEHFLPIEKGLE 319 (437)
T ss_dssp -------------------------------------------------------------------CGGGGSCBCSSGG
T ss_pred -------------------------------------------------------------------ccceecccccccc
Confidence 1222333333220
Q ss_pred EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEE
Q 001159 790 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 868 (1135)
Q Consensus 790 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd 868 (1135)
+.. +.+..| ...|++++|+ ++++|++|+ |+.|++||
T Consensus 320 ----~~~-------------------------------------~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 320 ----ELN-------------------------------------FCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp ----GCC-------------------------------------CCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred ----cce-------------------------------------eccccc-CCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 000 111125 8889999999 889999998 99999999
Q ss_pred CCCccEEEEEeCCCC---CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC--CCeEEEE
Q 001159 869 MMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSS 943 (1135)
Q Consensus 869 ~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~ 943 (1135)
+.+++....+.+|.. .+....+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999988643 456667777 55555443 333444455667789999999999998 7899999
Q ss_pred cCCCcEEEEe
Q 001159 944 GADAQLCMWS 953 (1135)
Q Consensus 944 ~~D~~i~iwd 953 (1135)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=346.65 Aligned_cols=283 Identities=16% Similarity=0.170 Sum_probs=239.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 466899999998 588899999999999988765432 3344 4566668999999999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
.||.|++||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999875443 5678999999999999999 899999999999999999999999999999999999998
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCceeEecC---CCCcEEE---------------------EEEcCCCCEEEEEecCC
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTM---------------------MAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~---------------------~~~s~~~~~l~~~~~~~ 563 (1135)
++ .+|++++.||.|++||+++.+....+.. +...+.+ ++|+|++++|++++.
T Consensus 192 ~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 RG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp TT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred CC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 65 8999999999999999998888777764 3334444 445789999999875
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCCce-EEEEeCCCCCCCcceEEEc
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~ 641 (1135)
++.|++||+++++.+..+...+...|.+++|+|++. +|++++.||.|++||+.+++. +..+..+.. ..|.++.+
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~- 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNVYF- 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEEEE-
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEEEe-
Confidence 888999999999988888765555899999999998 999999999999999998754 667765432 36777755
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001159 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++++|++++.|+.|++|++.+.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=322.84 Aligned_cols=304 Identities=15% Similarity=0.204 Sum_probs=231.9
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+.+.+..+.+|.. .|.+++|+++ +|++++.|++|++||+..+ +.+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4567788999988 8999999987 9999999999999999875 445555332245589999999999999999999
Q ss_pred CcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcc
Q 001159 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
++|++|+....... ..
T Consensus 80 ~~v~iw~~~~~~~~--~~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADR--TF-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCc--cc--------------------------------------------------------------
Confidence 99999997543100 00
Q ss_pred cccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcc
Q 001159 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 813 (1135)
Q Consensus 734 ~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 813 (1135)
.. .. +..
T Consensus 96 --------------------------------------~~---~~------------------~~~-------------- 102 (330)
T 2hes_X 96 --------------------------------------EM---DL------------------LAI-------------- 102 (330)
T ss_dssp --------------------------------------CC---EE------------------EEE--------------
T ss_pred --------------------------------------cc---ee------------------EEE--------------
Confidence 00 00 000
Q ss_pred cccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC----ccEEEEEeCCCCCeEEE
Q 001159 814 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFL 888 (1135)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~h~~~v~~l 888 (1135)
+.+ | ...|.+++|+|+|++||+++ |++|++||+.. .+++..+.+|...|.++
T Consensus 103 --------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 103 --------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp --------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred --------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 111 6 88899999999999999999 89999999942 35678889999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccc--eeeEEecCcCCCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCCCcee---c
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKL---K 961 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~~~~~---~ 961 (1135)
+|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+... .
T Consensus 160 ~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 160 IWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9999 8999999999999999998876 678889999999999999999 779999999999999999764211 1
Q ss_pred eeeeecCCC-CCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCc--eeeccCCCCCCCC-CEEEEEEee--CCCEE
Q 001159 962 SRFIQAPAG-RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE--CSRSWSPKDALPA-PISSAIYSC--DGLLV 1033 (1135)
Q Consensus 962 ~~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~--~~~~~~~~~~h~~-~i~~~~~s~--d~~~l 1033 (1135)
..+.....+ |. ..|.+++|++++ +|++ +.|+.|+||+. .+. ..... ..+|.. .|.+++|+| ++++|
T Consensus 239 ~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 239 WVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp EEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCE
T ss_pred eEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEE
Confidence 112223332 44 689999999877 4555 78999999999 443 22222 234566 899999999 78999
Q ss_pred EEEeCCCeEEEEECCC
Q 001159 1034 YAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1034 ~~~~~dg~I~vwd~~~ 1049 (1135)
++|+.||.|++|++++
T Consensus 313 as~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTSEEEEEEC--
T ss_pred EEecCCCcEEEEEecc
Confidence 9999999999999875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=355.91 Aligned_cols=344 Identities=10% Similarity=0.048 Sum_probs=239.1
Q ss_pred CCcceEEEEEcCCC---------CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 407 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 407 h~~~V~~v~~spd~---------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
+.+.|.+|+|+|++ ++||+|+.++.. ...+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999866420 01368888 899999999
Q ss_pred cEEEEEcCCCeee----eeecCCCCCeeEEEeecc----CCccEEEEEEcCCeEEEEeCcCCCc-----------eeEec
Q 001159 478 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 538 (1135)
Q Consensus 478 ~i~iwd~~~~~~~----~~~~~h~~~v~~i~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~ 538 (1135)
+|+|||+.+++.. .++.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 346678899999999997 3467999999999999999986542 23567
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEE--EecCCC-CEEEEEeCCCeEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i--~~s~~~-~~l~~~~~dg~i~i 614 (1135)
.|...|.+++|++++ .|++|+. |++|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888875 8999999999764 4556888887 89998 578887 89999999999999
Q ss_pred EECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccc
Q 001159 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1135)
||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++ .....+.+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~g--------------------- 395 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVS--------------------- 395 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEE---------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeec---------------------
Confidence 99998887766665533235789999999999999999999999998765 11100000
Q ss_pred cCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccc
Q 001159 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1135)
Q Consensus 695 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1135)
T Consensus 396 -------------------------------------------------------------------------------- 395 (524)
T 2j04_B 396 -------------------------------------------------------------------------------- 395 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 775 VVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 775 i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
| ...|.+++|||+|+
T Consensus 396 ----------------------------------------------------------------H-~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 396 ----------------------------------------------------------------R-ETTITAIGVSRLHP 410 (524)
T ss_dssp ----------------------------------------------------------------C-SSCEEEEECCSSCC
T ss_pred ----------------------------------------------------------------C-CCceEEEEeCCCCC
Confidence 4 55666666666666
Q ss_pred EEEEEe-CCeEEEEECCCccEEEEEeC-----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceeeEEecCcCCC
Q 001159 855 YVMSAS-GGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNR 927 (1135)
Q Consensus 855 ~la~~~-dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~ 927 (1135)
+|++|+ ||+|++||+..+ .+...+. +...|.+++|+| ++..+. ... .+++|+.. ++.++..+.+|.+.
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCS
T ss_pred eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCce
Confidence 666666 666777766442 2111110 122467889999 676552 222 34444443 56778889999999
Q ss_pred eEEEEEcCCCC---eEEEEcCCCcEEEEeCCC
Q 001159 928 ITGLAFSPTLN---ALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 928 i~~l~~s~d~~---~l~s~~~D~~i~iwd~~~ 956 (1135)
|.+|+|+|++. ++|+++.||+|+||++..
T Consensus 486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 99999999964 999999999999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=329.12 Aligned_cols=290 Identities=14% Similarity=0.276 Sum_probs=234.4
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC------------------CcEEEEEEcCCCCEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------------NWCTMMAYSADGTRL 556 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------------~~i~~~~~s~~~~~l 556 (1135)
+|...|.+++|+|++ .+|++|+ ++++++|++.+++....+..+. ..|.+++|+|++++|
T Consensus 62 ~h~~~V~~v~fspdg--~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCC--CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 599999999999865 8898876 7899999999888776665432 248999999999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++++. |+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+.+++....+..+ ..+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC---CCcE
Confidence 99985 88999999999999999999988 8999999999999999999999999999999988887654 3589
Q ss_pred eEEEcC-CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCC
Q 001159 637 RLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 637 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 715 (1135)
+++|+| ++++|++++.|+.|++||+.++ .....+....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~---------------------------------------- 249 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSEN---------------------------------------- 249 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccc----------------------------------------
Confidence 999999 8999999999999999998776 2111110000
Q ss_pred CCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccc
Q 001159 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNA 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg 795 (1135)
.....
T Consensus 250 --------------------------------------------------~~~~~------------------------- 254 (393)
T 1erj_A 250 --------------------------------------------------ESGTG------------------------- 254 (393)
T ss_dssp -----------------------------------------------------CC-------------------------
T ss_pred --------------------------------------------------cCCCC-------------------------
Confidence 00001
Q ss_pred eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC---
Q 001159 796 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--- 871 (1135)
Q Consensus 796 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~--- 871 (1135)
| ...|.+++|+|+|++|++|+ |++|++||+.+
T Consensus 255 -------------------------------------------h-~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 255 -------------------------------------------H-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp -------------------------------------------C-SSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred -------------------------------------------C-CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence 3 44455555555555555554 45555555433
Q ss_pred ---------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC------C
Q 001159 872 ---------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP------T 936 (1135)
Q Consensus 872 ---------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~------d 936 (1135)
+.+...+.+|...|.+++|+| ++.+|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|++ +
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 369 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTT
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCC
Confidence 345667888999999999999 899999999999999999999999999999999999999986 6
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001159 937 LNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+.+|+|++.|++|++|++..
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEE
T ss_pred CCEEEEECCCCcEEECcccc
Confidence 88999999999999999865
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=358.24 Aligned_cols=298 Identities=20% Similarity=0.282 Sum_probs=253.3
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+|++..+|++|+.||+|+||++.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344555 9999999999998766899999999999999986543211 0112367899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee---ec
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE 494 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~ 494 (1135)
|++++|++|+.|++|+|||+.++...+ .+.+|...|.+++|+|+++ +|++|+.|++|++||+........ ..
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999886554 7789999999999999999 799999999999999765543332 24
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|...|.+++|+|+.....+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6899999999999765578999999999999999999888899999999999999999999999985 889999999
Q ss_pred CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-----------------CCCcce
Q 001159 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 637 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 637 (1135)
.+++.+..+..+. .|.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999888776543 799999999998777765 56699999999998887754311 113678
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 638 LRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 638 ~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
++|+|+|++|++|+.||+|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.85 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=247.1
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+..+...+. |...|++++|+|+|..+||+|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 345566666 89999999999999338999999999999999987654320 124699999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 44443323334558899999999999 8999999999999998 67888999
Q ss_pred cCCCCCeeEEEeeccCCcc-EEEEEEcCCeEEEEeCcC----CCceeEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCC
Q 001159 494 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .|...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999999875 5 999999999999999998 3344444 6888999999999 9999999975 88
Q ss_pred eEEEEECCCCeEEEEeecccC----------------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 568 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.|++||+++++.+..+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 999999999887777765531 13444666777766 777999999999999999999987655
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
...+..++|+|++++|++++ |+.|++||+++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55778889999999999997 89999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=330.64 Aligned_cols=317 Identities=20% Similarity=0.314 Sum_probs=275.3
Q ss_pred EeecccCCE-EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEE
Q 001159 448 EIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 448 ~l~~h~~~v-~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iw 526 (1135)
.+.+|.+.| .+ ++++++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++ .++++|+.||+|++|
T Consensus 113 ~l~~h~~~v~~~--~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEE--EEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EecccCCCcEEE--EEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEE
Confidence 677898875 55 445677 899999999999999999999999999999999999963 699999999999999
Q ss_pred eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE
Q 001159 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 606 (1135)
|+.+++....+..|...|.+++|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .|.++++ ++++++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEE
Confidence 999998888999999999999995 567888875 88999999999999999999887 8999998 68899999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCC
Q 001159 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
+.||.|++||+.+++.+..+..+.. .|.++.| ++.++++++.||.|++||+.++. ....+.
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-------------- 316 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLT-------------- 316 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEEC--------------
T ss_pred cCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEc--------------
Confidence 9999999999999999999886644 7889998 78899999999999999987651 110000
Q ss_pred CCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeec
Q 001159 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEE
Q 001159 767 PDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~ 846 (1135)
+ | ...+.+
T Consensus 317 ---------------------------------------------------------------------~--~-~~~v~~ 324 (445)
T 2ovr_B 317 ---------------------------------------------------------------------G--H-QSLTSG 324 (445)
T ss_dssp ---------------------------------------------------------------------C--C-CSCEEE
T ss_pred ---------------------------------------------------------------------C--C-cccEEE
Confidence 0 3 445555
Q ss_pred EEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-
Q 001159 847 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL- 921 (1135)
Q Consensus 847 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 921 (1135)
+.+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+
T Consensus 325 ~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~ 399 (445)
T 2ovr_B 325 MEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLV 399 (445)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeee
Confidence 555 567888888 89999999999999999986 888999999964 69999999999999999999988888
Q ss_pred ----cCcCCCeEEEEEcCCCCeEEEEcCCCc----EEEEeCCCC
Q 001159 922 ----KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDKW 957 (1135)
Q Consensus 922 ----~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iwd~~~~ 957 (1135)
.+|.+.|++++|+|++.++++++.||+ |.+||++..
T Consensus 400 ~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 400 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 578899999999999999999999998 999999863
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=328.95 Aligned_cols=319 Identities=18% Similarity=0.300 Sum_probs=274.6
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887533 355579999999999999999999987665 778999999999998 44 799999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+.+|...|.++.+++ ..+++|+.||+|++||+.+++....+..|...|.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999953 68999999999999999999999999999999999999 7888999875
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
++.|++||+++++.+..+.+|.. .|.+++| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 88999999999999999998887 8999998 789999999999999999999999999887644 5666666 5
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
+.++++++.||.|++||+.++. ....+..
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-------------------------------------------------- 357 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTGQ-CLQTLQG-------------------------------------------------- 357 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCC-EEEEECS--------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCCc-EEEEEcc--------------------------------------------------
Confidence 6799999999999999987651 1100000
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEE----
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---- 878 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~---- 878 (1135)
...| ...|.+++|+ ++++++|+ ||.|++||+.+++.+..+
T Consensus 358 --------------------------------~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 358 --------------------------------PNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp --------------------------------TTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred --------------------------------CCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc
Confidence 0014 6778888884 68899998 899999999999999888
Q ss_pred -eCCCCCeEEEEEecCCCcEEEEEeCCCc----EEEEEccc
Q 001159 879 -MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 914 (1135)
Q Consensus 879 -~~h~~~v~~l~~sp~~~~~lasg~~dg~----v~iwd~~~ 914 (1135)
.+|.+.|.+++|+| ++.+||+|+.||+ |.+||+..
T Consensus 403 ~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 403 SGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46788999999999 8999999999998 99999874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=329.50 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=254.3
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEe
Confidence 345555 999999999999 4 7899999999999999987621110 0011256899999999999
Q ss_pred CC----C---CeEEEEeCCCeEEEEEeCCCCc-----eeeeeEeecc-----cCCEEEEEEe----cCCCeEE-EEEEcC
Q 001159 418 PD----G---LMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGD 475 (1135)
Q Consensus 418 pd----~---~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h-----~~~v~~v~~s----~d~~~~~-l~s~~~ 475 (1135)
|+ + ++|++++.||.|++||+.+++. +. .+..| ...|.+++|+ |++. + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998765 43 66778 5899999999 9998 7 999999
Q ss_pred CCcEEEEEcCC------Ceeee-----ee-------cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 476 DKMIKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 476 d~~i~iwd~~~------~~~~~-----~~-------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
|+.|++||+.+ ++.+. .+ ..|...|.+++|+|+ + ++++++.||.|++||+++.+....+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 77666 77 448999999999884 4 9999999999999999998888888
Q ss_pred cC---C---CCcEEEEEEcCCCCEEEEEecCCCCC---CeEEEEECCCCeEEEEeec-------------ccCCceeEEE
Q 001159 538 DA---P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQ 595 (1135)
Q Consensus 538 ~~---~---~~~i~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~i~ 595 (1135)
.. | ...|.+++|+|++++|++++. + +.|++||+++++.+..+.+ |.. .|.+++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred eccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 88 8 889999999999999999875 6 8999999999999999988 766 899999
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCceEEEEe------CC-------------CCCCCcceEEEcCCC----------CE
Q 001159 596 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SL 646 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~~~~~----------~~ 646 (1135)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 013489999999998 79
Q ss_pred EEEEECCCcEEEEEcCCC
Q 001159 647 LAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~ 664 (1135)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999999876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=314.96 Aligned_cols=305 Identities=19% Similarity=0.300 Sum_probs=245.0
Q ss_pred EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-----eeeeecCCCCCeeEEEee
Q 001159 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~~ 506 (1135)
+.++...+ +.+....+|+||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|...|.+++|+
T Consensus 18 ~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 18 LYFQSMMT-EQMTLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred EEEEEccC-CceEEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC
Confidence 33444433 333444578999999999999998433 89999999999999987643 567889999999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE-eec
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~ 585 (1135)
|++ .+|++++.|+.|++|+............+...+..+.++++++++++++. ++.+++||......... ..+
T Consensus 96 ~dg--~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 96 SDG--QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp TTS--SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSS
T ss_pred CCC--CEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEecc
Confidence 854 89999999999999999988888888888889999999999999999975 88899999987665444 445
Q ss_pred ccCCceeEEEecCCC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 586 FRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
|.. .+..++|++++ ..+++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 170 ~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 170 HSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp CSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred ccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 554 89999998765 5788899999999999999999999887754 899999999999999999999999999865
Q ss_pred CchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 001159 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
.. .+..+
T Consensus 247 ~~-~~~~~------------------------------------------------------------------------ 253 (340)
T 4aow_A 247 GK-HLYTL------------------------------------------------------------------------ 253 (340)
T ss_dssp TE-EEEEE------------------------------------------------------------------------
T ss_pred Cc-eeeee------------------------------------------------------------------------
Confidence 51 00000
Q ss_pred cccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeec
Q 001159 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 823 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
T Consensus 254 -------------------------------------------------------------------------------- 253 (340)
T 4aow_A 254 -------------------------------------------------------------------------------- 253 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEE---------eCCCCCeEEEEEecCC
Q 001159 824 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF---------MSPPPAATFLAFHPQD 894 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~l~~sp~~ 894 (1135)
. + ...+.+++|+|++.+++++.|+.|++||+.++..+..+ .+|...|++++|+| +
T Consensus 254 -----------~---~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-d 317 (340)
T 4aow_A 254 -----------D---G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-D 317 (340)
T ss_dssp -----------E---C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-T
T ss_pred -----------c---C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-C
Confidence 0 1 44567777888777777666888888888877666554 35888999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccce
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
+++||+|+.||.|+|||+.+|+
T Consensus 318 g~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999885
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=318.32 Aligned_cols=289 Identities=12% Similarity=0.127 Sum_probs=256.5
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.....|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF 85 (369)
T ss_dssp EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence 33344999999999999998 788999999999999998876653 6789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcCCCe------
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------ 488 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~------ 488 (1135)
+++|++++.||.|++||+.+++.+. .+. |...|.+++|+|++. ++++++.+ +.|++||+..+.
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999999999987665 444 888999999999999 88999888 999999998664
Q ss_pred -----eeeeecCCCC--CeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 489 -----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 489 -----~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.+..+..|.. .+.+++|+|++ .++++++.||.|++||+++ ......+..+...|.+++|+|++++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 3345556666 89999999865 8999999999999999998 566778888999999999999999999997
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC--------------eEEEEECCCCceEEEE
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~ 626 (1135)
. ++.|++||+++++.+..+.. .. .+..++|+|+++++++++.++ .+++||..+++.+..+
T Consensus 238 ~----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 238 R----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp T----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred C----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 5 88999999999999988883 33 799999999999999999888 8999999999999999
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..|.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 312 ~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 312 QGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 87754 7999999999999999999999999999866
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=328.95 Aligned_cols=320 Identities=19% Similarity=0.308 Sum_probs=272.7
Q ss_pred ccCCCcce-EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 404 LNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V-~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+.+|...| .++.+ ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|++++ .+++|+.|++|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 45687775 66666 67899999999999999999987555 778999999999999887 68999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-----------------------eeEecC
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDA 539 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------~~~~~~ 539 (1135)
|+.+++.+..+.+|...|.+++|++.+++.++++++.||+|++||+.+... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999877779999999999999999987653 334566
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 77777766 678899999985 88999999999999999999887 899999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCc
Q 001159 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 699 (1135)
++.+..+..|.. .|.++.|+ +.++++++.||.|++||+.++..
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--------------------------------- 384 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--------------------------------- 384 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE---------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce---------------------------------
Confidence 999999987654 78999997 57999999999999999865410
Q ss_pred cccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEE
Q 001159 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
..
T Consensus 385 ------------------------------------------------------------------------------~~ 386 (464)
T 3v7d_B 385 ------------------------------------------------------------------------------KF 386 (464)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------ee
Confidence 00
Q ss_pred EEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEE
Q 001159 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 859 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~ 859 (1135)
.+. | ...+..++|++++++++++
T Consensus 387 ~~~--------------------------------------------------------~-~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 387 SYH--------------------------------------------------------H-TNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp EEE--------------------------------------------------------C-TTCCCEEEEEECSSEEEEE
T ss_pred eec--------------------------------------------------------C-CCCccEEEEEeCCCEEEEe
Confidence 000 1 4455678899999999999
Q ss_pred eCCeEEEEECCCccEEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001159 860 SGGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 912 (1135)
Q Consensus 860 ~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 912 (1135)
+||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 410 ~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 410 SENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp ETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 999999999999999886 66788999999997 4567777788887766643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=311.38 Aligned_cols=289 Identities=16% Similarity=0.258 Sum_probs=253.0
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~ 65 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSV 65 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEE
Confidence 346677777 9999999999 9998 688999999999999988765442 55789999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
+|+|++++|++++.||.|++|++...........+.+|...|.+++| ++. ++++++.|+.|++|| .++.+..+.
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99999999999999999999999876554555578899999999999 455 799999999999999 778888999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.|...|.++++.|. ++.++++++.||.|++|| ..+....+.. +...+.+++|+|++. +++++. ++.|++||
T Consensus 140 ~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d 211 (313)
T 3odt_A 140 AHNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVD 211 (313)
T ss_dssp CCSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEE
T ss_pred cCCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEE
Confidence 99999999999884 237999999999999999 3445556666 888999999999998 777764 88999999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+++++.+..+.+|.. .|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.|
T Consensus 212 ~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 212 MHTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp TTTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETT
T ss_pred CCchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCC
Confidence 999999999999887 89999999999 689999999999999999999999987754 799999999998 6679999
Q ss_pred CcEEEEEcCCC
Q 001159 654 NGIKILANSDG 664 (1135)
Q Consensus 654 g~i~iwd~~~~ 664 (1135)
|.|++|++.++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=323.46 Aligned_cols=293 Identities=13% Similarity=0.117 Sum_probs=248.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc--ccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
|.++|++++|+|+|+ +||+|+.||.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 788999999999998 78899999999999998875 3332 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee----eeeecCCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QYTFEGHEA 498 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~h~~ 498 (1135)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..+.. .....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998865332 224567999999999999999 899999999999999988762 233467899
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCc------------------CCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .++++++.||.|++||+. .......+..|...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999999855 899999999999999954 4566677778889999999999999999997
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC--CceE---------------
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 623 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 623 (1135)
. ++.|++||+++++.+..+..|.. .|.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 88999999999999999998877 89999999999887777 899999999987 4210
Q ss_pred -----------------------EEEeCCCCCCCcceEEEc-CCC---CEEEEEECCCcEEEEEcCCCchhhh
Q 001159 624 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 -----------------------~~~~~~~~~~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
..+. ..+...|.+++|. ++| .+|++++.||.|++|++.++.++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 1345589999966 677 9999999999999999987755443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=323.67 Aligned_cols=291 Identities=17% Similarity=0.279 Sum_probs=245.4
Q ss_pred CCCCeeEEEEecC---CCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--
Q 001159 345 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.++|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCCC
Confidence 8999999999994 444566666788999999998765532 0 01112247788999999999
Q ss_pred --CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCCCeeeeee---
Q 001159 420 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 420 --~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 493 (1135)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999887655 6778999999999999 787 8999999999999999999999888
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec----------------------------CCCCcEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD----------------------------APGNWCT 545 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i~ 545 (1135)
.+|...|.+++|+|++ .+|++++.||.|++||+++.+....+. .|...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999999854 899999999999999998765443222 3888999
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe--------------EEEEeecccCCceeEEEecCC--CCEEEEEeCC
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--------------IKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 609 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--------------~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~d 609 (1135)
+++|+ ++++++++. ++.|++||+.++. .+..+.+|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778988875 8899999998764 3778888877 7999999999 9999999999
Q ss_pred CeEEEEECCCCc----eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 610 FQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 610 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
|.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.+
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999875 444677765456899999999999999999999999999853
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=324.33 Aligned_cols=345 Identities=17% Similarity=0.215 Sum_probs=268.1
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+.+|.. .|.+++|++++ ++++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc--CEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3556788888855677666 467999999999999999999999999987654 89999999988 999999999999
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
+||+.++ .....+.+
T Consensus 187 vwd~~~~-~~~~~~~~---------------------------------------------------------------- 201 (464)
T 3v7d_B 187 VWDIKKG-CCTHVFEG---------------------------------------------------------------- 201 (464)
T ss_dssp EEETTTT-EEEEEECC----------------------------------------------------------------
T ss_pred EEECCCC-cEEEEECC----------------------------------------------------------------
Confidence 9999877 32222222
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe--cCCcceeEecccceeeeEEeccccCCCCCcccc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT--NSGLSLLALASNAVHKLWKWQRTERNPSGKATA 815 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 815 (1135)
|...| .+++|+ +++..+++++.||.+++|++.............
T Consensus 202 ---------------------------------h~~~v-~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (464)
T 3v7d_B 202 ---------------------------------HNSTV-RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247 (464)
T ss_dssp ---------------------------------CSSCE-EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C
T ss_pred ---------------------------------CCCcc-EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC
Confidence 44555 888888 578899999999999999987654322211111
Q ss_pred cccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCC
Q 001159 816 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
....................+ | ...+.++ +++++++++++ ||.|++||+.+++++..+.+|...|.+++|+| +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~ 321 (464)
T 3v7d_B 248 DYPLVFHTPEENPYFVGVLRG--H-MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-E 321 (464)
T ss_dssp CSSEEESCGGGCTTEEEEECC--C-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-T
T ss_pred CcceEeeccCCCeEEEEEccC--c-cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-C
Confidence 111111111111111222333 5 6777766 78899999999 99999999999999999999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCC
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 974 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
+++|++|+.||.|++||+.+++++..+.+|...|.+++|+ +.+|++++.|++|++||+.+++..... ...
T Consensus 322 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----~~~---- 391 (464)
T 3v7d_B 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----HHT---- 391 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----ECT----
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----cCC----
Confidence 9999999999999999999999999999999999999997 589999999999999999987643221 111
Q ss_pred CCCceEEEECCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 975 LVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 975 ~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
..+..++|++++++++++.|+.|++||+ +++.+..... .|...|.+++|+ +..++++++.||.+.+|-
T Consensus 392 -~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~--~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 392 -NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL--KDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTT--TTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhc--cCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 4567889999999999988999999999 7777765433 348899999997 445566667777666554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=331.92 Aligned_cols=314 Identities=13% Similarity=0.195 Sum_probs=254.2
Q ss_pred ecCCCCCCccccCCCcceeeEEee-c-CCCCeeEEEEec-CCCeEEEEEeccceEEEEEcCC---ccccccCCceeeccc
Q 001159 320 FAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDIS 393 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~~~~~-~-h~~~V~~v~~sp-~g~~lla~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~~ 393 (1135)
|++++..++....-...++++..+ . |.+.|++++|+| +++ +||+|+.||.|+|||+.+ +.....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 104 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS--------- 104 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC---------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce---------
Confidence 566666665543333566788888 5 789999999999 998 789999999999999876 331110
Q ss_pred ccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC---CCCceeee-----eEee--c--ccCCEEEEE-
Q 001159 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQH-----LEID--A--HVGGVNDIA- 460 (1135)
Q Consensus 394 ~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~---~~~~~~~~-----~~l~--~--h~~~v~~v~- 460 (1135)
....+|...|.+++|+|++++|++|+.||.|++||+. +++..... ..+. . +...+.++.
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence 0012589999999999999999999999999999995 44433211 1111 1 556677777
Q ss_pred -EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC--CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 461 -FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 461 -~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
+++++. +|++|+.|+.|++||+++++.+..+.+ |...|.+++|+|++ .+|++|+.||.|++||+++.+....+
T Consensus 177 ~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~ 252 (437)
T 3gre_A 177 FVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSW 252 (437)
T ss_dssp EECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEE
Confidence 457777 899999999999999999999999988 89999999998864 89999999999999999998877777
Q ss_pred c-CCCCcEEEEEEc----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc-------------------------
Q 001159 538 D-APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------- 587 (1135)
Q Consensus 538 ~-~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------- 587 (1135)
. .+...|.+++|+ +++.+|++++. |+.|++||+++++.+..+.+|.
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 5 677799999665 46778988875 8899999999999998888652
Q ss_pred CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-----------------------------------CC
Q 001159 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----------------------------------GL 632 (1135)
Q Consensus 588 ~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~ 632 (1135)
...|.+++|+ ++++|++++.||.|++||+.+++....+..+. +.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 2358889999 77899999999999999999998887776531 45
Q ss_pred CCcceEEEcCC--CCEEEEEECCCcEEEEE
Q 001159 633 PASPRLRFNKE--GSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 633 ~~v~~~~~~~~--~~~l~~~~~dg~i~iwd 660 (1135)
..|++++|+++ +.+|++|+.||.|+||+
T Consensus 408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 68999999998 78999999999999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=332.35 Aligned_cols=292 Identities=16% Similarity=0.213 Sum_probs=235.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|...|+|++|+|.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| ++++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCEE
Confidence 7889999999996655899999999999999987754321 01568999999999998 78999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++|+.||+|++||+.++. .........+...+.+++|+|++. +|++|+.||.|++||++ ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 999999999999998643 222222223445688999999999 89999999999999975 56778899999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCcee---EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
+|+|..+ .++++|+.|++|++||+++.+... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9998754 589999999999999998766543 33567889999999999999999985 889999999999888
Q ss_pred EEeecccCC-----ceeEEEecCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCcceE-EEcC
Q 001159 581 RTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL-RFNK 642 (1135)
Q Consensus 581 ~~~~~~~~~-----~v~~i~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~ 642 (1135)
..+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 777665431 123356777777666654 34679999999999988875432 3367776 6999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+|++|++|+ |++|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 779999999887
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=320.48 Aligned_cols=289 Identities=15% Similarity=0.202 Sum_probs=242.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEec---cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.+.|++++|+|+++.++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCCC
Confidence 99999999999999878888887 99999999998765432 02368899999999999
Q ss_pred -CCeEEEEeCCCeEEEEEeCCCC-ceeeeeEeecccCCEEEEEE------ecCCCeEEEEEEcCCCcEEEEEcCCCe-ee
Q 001159 420 -GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAF------AHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ 490 (1135)
Q Consensus 420 -~~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~------s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~ 490 (1135)
+++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999876 443 67899999999965 67888 89999999999999999887 67
Q ss_pred eeecCCCC----CeeEEEeec--cCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC---CCCEEEEEec
Q 001159 491 YTFEGHEA----PVYSVCPHH--KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRLFSCGT 561 (1135)
Q Consensus 491 ~~~~~h~~----~v~~i~~~~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~ 561 (1135)
..+..|.+ .|.+++|.+ ..++.++++++.||.|++||+++.+... ...+...|.+++|+| ++.++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 77766655 899998422 2345899999999999999999877643 456778999999999 9999999875
Q ss_pred CCCCCCeEEEEECCCCeEEEEee-----cccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC---------------
Q 001159 562 SKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM--------------- 620 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~--------------- 620 (1135)
++.|++||+++++.+..+. +|.. .|.+++|+|+++ ++++++.||.|++||+..+
T Consensus 233 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 233 ----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp ----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred ----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 8899999998877655554 7766 899999999998 8999999999999999854
Q ss_pred ----ceEEEEeCCCCCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCC
Q 001159 621 ----NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~ 664 (1135)
+.+..+..|. ..|.+++|+|++++|+ +++.||.|++||+.+.
T Consensus 308 ~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 3455666654 4899999999999998 7999999999999765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=316.31 Aligned_cols=315 Identities=15% Similarity=0.203 Sum_probs=252.0
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEE
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 648 (1135)
+|+.........+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++....+....+...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 455566777888888887 89999999999 999999999999999999999888887545566899999999 789999
Q ss_pred EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccC
Q 001159 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+++.|+.|++||+.+. . ...
T Consensus 136 s~~~d~~i~iwd~~~~-~-~~~---------------------------------------------------------- 155 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-V-IQV---------------------------------------------------------- 155 (383)
T ss_dssp EEETTTEEEEEETTSC-E-EEE----------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC-c-eEE----------------------------------------------------------
Confidence 9999999999998632 0 000
Q ss_pred CCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCC
Q 001159 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~ 808 (1135)
+. .
T Consensus 156 --------------------------------------------------~~----------~----------------- 158 (383)
T 3ei3_B 156 --------------------------------------------------FA----------K----------------- 158 (383)
T ss_dssp --------------------------------------------------EE----------C-----------------
T ss_pred --------------------------------------------------Ee----------c-----------------
Confidence 00 0
Q ss_pred CCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEE
Q 001159 809 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF 887 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~ 887 (1135)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.+
T Consensus 159 -------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 159 -------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp -------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred -------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 0 003 67799999999999999999 899999999 57888999999999999
Q ss_pred EEEecCCCc-EEEEEeCCCcEEEEEccc----ceeeEEecCcCCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceec
Q 001159 888 LAFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 888 l~~sp~~~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
++|+| +++ +|++|+.|+.|++||+.+ +.++..+ +|.+.|++++|+| ++++|++++.|+.|++||+.+++...
T Consensus 210 ~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 210 AEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 99999 677 999999999999999998 6666666 6999999999999 99999999999999999999887543
Q ss_pred eeeeecC--CCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 962 SRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 962 ~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
....... ..+. ..+. +.|+|++ .+..++|+||+++ +++.|
T Consensus 288 ~~~~~~~~~~~~~---~~~~-~~~~p~~--------------------------------~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 288 QIIIHPHRQFQHL---TPIK-ATWHPMY--------------------------------DLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp EEEECCBCCCTTS---CCCC-CEECSSS--------------------------------SEEEEECBCCTTT--CTTCC
T ss_pred ccccccccccccc---cceE-EeccCCC--------------------------------CceEEEecCCccc--ccCCC
Confidence 3221110 0111 1222 3444443 4567888999998 89999
Q ss_pred CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1040 GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1040 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
|.|++||+.+++.+..+..+. +.....+++|+| ++++|++|+ ||.|++|++.+
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~--------~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPN--------AAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTT--------BCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCC--------CCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 999999999999998887532 112233568999 789999997 99999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=317.03 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=232.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEecc-------ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.+.+|+|++|+|||+ +||+|+.+ +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999997 78888643 36999999876543211110 01112366788899888764
Q ss_pred CCCCeEEEE-----------eCCCeEEEEEeCCCCcee-eeeE-----eecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 418 PDGLMLGVA-----------FSKHIVHLYTYNPTGELR-QHLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 418 pd~~~las~-----------~~dg~i~iwd~~~~~~~~-~~~~-----l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
++.+++| +.|+.+++|++.+..... .... ...+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 5566665 357789999988754321 1111 12345568999999999964456777899999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE--ecCCCCcEEEEEEcCCCCEEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
|||+.+++++..+. |...|.+++|+|++ .++++++.+ .+++|+..++..... ...|...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 99999999999886 88899999998855 889988855 566666666665543 3456778999999999999999
Q ss_pred EecCCCCCCeEEEEECCCCeE----EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE-eCCCCCC
Q 001159 559 CGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP 633 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 633 (1135)
++.++.....+++|+...+.. ...+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++++..+ .+|. .
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--F 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--S
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--C
Confidence 987544445788999876653 345667766 8999999999999999999999999999999998876 5564 4
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|++++|+|||++||+++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=318.63 Aligned_cols=298 Identities=14% Similarity=0.150 Sum_probs=251.6
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC------ceeEecCCCCcEEEEEEcCC----C---CE
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TR 555 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~i~~~~~s~~----~---~~ 555 (1135)
....+.+|.+.|++++|+| .+|++++.||.|++||+.+.+ ....+..|...|.+++|+|+ + ++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3456789999999999987 599999999999999999888 67788899999999999999 9 99
Q ss_pred EEEEecCCCCCCeEEEEECCCCeE-----EEEeeccc----CCceeEEEec----CCCCE-EEEEeCCCeEEEEECCC--
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN-- 619 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~i~~s----~~~~~-l~~~~~dg~i~iwd~~~-- 619 (1135)
|++++. ++.|++||+.+++. +..+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 84 l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999875 88999999998886 88888884 3389999999 99999 99999999999999998
Q ss_pred ----CceEE-----EEeC-----CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCC
Q 001159 620 ----MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 620 ----~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----------- 226 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ----------- 226 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC-----------
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc-----------
Confidence 66655 6643 3345579999999999 9999999999999998765 111000000
Q ss_pred CCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEee
Q 001159 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 766 LPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
..| .. . ...|.
T Consensus 227 ---~~h--------------------------------------------------------------~~---~-~~~i~ 237 (397)
T 1sq9_A 227 ---HSM--------------------------------------------------------------IN---N-SNSIR 237 (397)
T ss_dssp ---C-----------------------------------------------------------------C---C-CCCEE
T ss_pred ---ccc--------------------------------------------------------------cc---c-CCccc
Confidence 000 00 1 45688
Q ss_pred EEEeecCCCEEEEEe-C---CeEEEEECCCccEEEEEeC-------------CCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001159 846 CIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQ 908 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-d---g~i~vwd~~~~~~~~~~~~-------------h~~~v~~l~~sp~~~~~lasg~~dg~v~ 908 (1135)
+++|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|+
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEE
Confidence 899999999999888 7 8999999999999999988 999999999999 899999999999999
Q ss_pred EEEcccceeeEEec------Cc---------------CCCeEEEEEcCCC----------CeEEEEcCCCcEEEEeCCCC
Q 001159 909 IYNVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 909 iwd~~~~~~~~~l~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~iwd~~~~ 957 (1135)
+||+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|++.++
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999999999 88 9999999999998 79999999999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=316.52 Aligned_cols=317 Identities=14% Similarity=0.249 Sum_probs=247.8
Q ss_pred ecCCCCCeeEEEeecc--CCccEEEEEEcCCeEEEEeCcCCCceeEecC-----CCCcEEEEEEcCC----CCEEEEEec
Q 001159 493 FEGHEAPVYSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-----PGNWCTMMAYSAD----GTRLFSCGT 561 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~s~~----~~~l~~~~~ 561 (1135)
..+|..+|.+++|+|. .....+++++.++.|++||+.+.+....+.. +...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 1225677777788999999998776654432 5578999999999 668988875
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeC-CCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~ 639 (1135)
++.|++||+.+++.+..+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++.+..+.. ..+...|.+++
T Consensus 94 ----dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 ----RGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp ----TCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ----CCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 88999999999999999998887 899999999 899999999999999999999999888832 22345899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|++++|++++.||.|++||+.++ +....+.....
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~------------------------------------------- 204 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYD------------------------------------------- 204 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHT-------------------------------------------
T ss_pred ECCCCCEEEEecCCCCEEEEECCCC-ccccccceeEE-------------------------------------------
Confidence 9999999999999999999999887 44444332110
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKL 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~i 799 (1135)
++|++..+...........
T Consensus 205 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 205 -------------------------------------------------------------YNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp -------------------------------------------------------------CCGGGCSSCCCCEEECCCS
T ss_pred -------------------------------------------------------------ecCCCCcccccceeeccCc
Confidence 0111111111100000000
Q ss_pred EEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc-----
Q 001159 800 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK----- 873 (1135)
Q Consensus 800 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~----- 873 (1135)
+. .... | ...|.+++|+ ++++++++ |+.|++||+.++.
T Consensus 224 ~~-------------------------------~~~~--~-~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 224 FS-------------------------------TRDI--H-RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp EE-------------------------------ECSS--C-SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred cc-------------------------------cccC--C-cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc
Confidence 00 0111 5 7788888887 66888887 8888888887664
Q ss_pred ---------EEEEEeCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEccccee----eEEecCc--CCCeEEEEEcCC
Q 001159 874 ---------VMTMFMSPPPAATFLAFHPQD--NNIIAIGMEDSSVQIYNVRVDEV----KTKLKGH--QNRITGLAFSPT 936 (1135)
Q Consensus 874 ---------~~~~~~~h~~~v~~l~~sp~~--~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h--~~~i~~l~~s~d 936 (1135)
.+..+.+|...|++++|+| + +++|++|+.||.|++||+.+++. ...+.+| ...|++++|+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred cccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC
Confidence 3778889999999999999 7 99999999999999999998763 3477877 789999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001159 937 LNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+++|++++.||.|++||+.+
T Consensus 347 ~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 347 SSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEEETTSEEEEEEC--
T ss_pred CCeEEEEeCCCEEEEEEecC
Confidence 99999999999999999863
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=308.28 Aligned_cols=302 Identities=13% Similarity=0.155 Sum_probs=249.3
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.+|...|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987655 7789999999999999999 89999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC-----CeEEEEeCcCCCc-----------eeEecCCCC--cE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--WC 544 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~i 544 (1135)
|+.+++.+..+. |...|.+++|+|++ .++++++.+ |.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999999887 88999999998865 899999999 9999999987643 233444554 89
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
.+++|+|++++|++++. ++.|++||+++ +..+..+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999875 88999999998 788889998877 8999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccc
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 703 (1135)
..+... ..+.+++|+|+++++++++.++...+|......
T Consensus 254 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEECS---SCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 888732 368999999999999999999865555432210
Q ss_pred cccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec
Q 001159 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 783 (1135)
....+++|++...... ..+ ..|...| .+++|+|
T Consensus 293 ---------------------------------------~~~~i~~~d~~~~~~~---~~~----~~~~~~v-~~~~~s~ 325 (369)
T 3zwl_B 293 ---------------------------------------GKFEARFYHKIFEEEI---GRV----QGHFGPL-NTVAISP 325 (369)
T ss_dssp -----------------------------------------CEEEEEETTTCCEE---EEE----ECCSSCE-EEEEECT
T ss_pred ---------------------------------------CcceeEEEecCCCcch---hhe----ecccCcE-EEEEECC
Confidence 0023445554432111 111 1256677 9999999
Q ss_pred CCcceeEecccceeeeEEeccc
Q 001159 784 SGLSLLALASNAVHKLWKWQRT 805 (1135)
Q Consensus 784 dg~~l~~~~~dg~i~iw~~~~~ 805 (1135)
++++|++++.||.|++|++...
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TSSEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=328.21 Aligned_cols=286 Identities=13% Similarity=0.125 Sum_probs=226.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc--cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+.++|++++|+|+|+ +||+|+.||.|+|||+.++ +.+.. +.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7899999999999999987 34332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe---eeeeecC-CCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 498 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~ 498 (1135)
|++++.|+.|++||+.++........+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998763334446778999999999999999 89999999999999999887 4677877 999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcC------------------CCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .+|++++.|+.|++||+.. .+....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999999854 8999999999999999853 2233344 7888999999999999999997
Q ss_pred cCCCCCCeEEEEECCCCeE----EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc---------------
Q 001159 561 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 621 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1135)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 88999999999887 778888877 89999999999999888877666 66654211
Q ss_pred ------------------------eEEEEeC-----------CCCCCCcceEEEcCC-CC---EEEEEECCCcEEEEEc
Q 001159 622 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~v~~~~~~~~-~~---~l~~~~~dg~i~iwd~ 661 (1135)
....... ..|...|.++.+.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014457889987653 33 6999999999999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=301.22 Aligned_cols=251 Identities=18% Similarity=0.265 Sum_probs=213.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~i 481 (1135)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975321 223478899999999999864 77 8999999999999
Q ss_pred EEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCC-----
Q 001159 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 552 (1135)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~----- 552 (1135)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 566788899999999999975568999999999999999987642 4567788999999999997
Q ss_pred --------CCEEEEEecCCCCCCeEEEEECCCCe----EEEEeecccCCceeEEEecCCC---CEEEEEeCCCeEEEEEC
Q 001159 553 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~i~~s~~~---~~l~~~~~dg~i~iwd~ 617 (1135)
+++|++++. |+.|++||++++. ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 568999885 8899999998765 6678888887 89999999985 78999999999999999
Q ss_pred CCCc---eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 618 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 618 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.+.. ....+..+.+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 12233223344579999999999999999999999999975
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.56 Aligned_cols=260 Identities=10% Similarity=0.070 Sum_probs=211.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence 46899999999998 899999999999 6444432 35899999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC-----Ce
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----PV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~v 500 (1135)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .||+++.||+|++||... ++..+. |.. .|
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 5666666654432211 22 4688999999999999 899999999999999544 667777 766 49
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-------eeEe----cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+++|+|++ ++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.|
T Consensus 133 ~svafSPDG--~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNPIE--SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECSSS--SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcCCC--CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 999999865 8999999999999999998753 3444 5667899999999999 666654 8899
Q ss_pred EEEECCCCeE---EEEee-cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE--cCC
Q 001159 570 VEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKE 643 (1135)
Q Consensus 570 ~~wd~~~~~~---~~~~~-~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~ 643 (1135)
++||+.++.. .+++. +|.. .|.+++|+ ++.+++++ +++|++||+.+++......+| ...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCCC
Confidence 9999988773 35664 5554 89999999 68899887 699999999987774444344 458999999 999
Q ss_pred CCEEEEEECCCcEEEEEcC
Q 001159 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~ 662 (1135)
+..+++++.+|+ ++|...
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 999999999999 999865
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=314.09 Aligned_cols=290 Identities=16% Similarity=0.248 Sum_probs=241.5
Q ss_pred CCCC--eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSN--VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~--V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
|.+. +.+++|++ .. +++++.||.|+|||+.+++.... ....|...|.+++|+|++++
T Consensus 90 ~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 90 IIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp CCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSE
T ss_pred CcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCE
Confidence 4444 55566665 43 45677899999999998876542 12238899999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeeeecCCCCCee
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~ 501 (1135)
|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. +|++|+.|+.|++||++ .+..+..+.+|.+.|.
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence 9999999999999999987655 677999999999994 45 89999999999999998 5677888999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+++|+|++ .+|++++.||.|++||+++......+..|...|.+++|+|++..+++.+. +..++.|++||+.+++.+.
T Consensus 222 ~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 222 GLAWRSDG--LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEECTTS--SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEE
T ss_pred EEEEcCCC--CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEE
Confidence 99999854 89999999999999999998888888899999999999998765554431 1238899999999999998
Q ss_pred EeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
.+..+. .|.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|++|
T Consensus 299 ~~~~~~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 299 TVDAGS--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEECSS--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred EEeCCC--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 887443 799999999999999954 8999999999997766654433445589999999999999999999999999
Q ss_pred EcCCCchh
Q 001159 660 ANSDGVRL 667 (1135)
Q Consensus 660 d~~~~~~~ 667 (1135)
++.++...
T Consensus 377 ~~~~~~~~ 384 (401)
T 4aez_A 377 RVYDGDHV 384 (401)
T ss_dssp ECCC----
T ss_pred ECCCCccc
Confidence 99988433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=335.38 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=183.8
Q ss_pred eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-----CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC
Q 001159 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1135)
Q Consensus 447 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg 521 (1135)
..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++ .+|++|+.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--SEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--CEEEEEeCCC
Confidence 367899999999999998654 899999999999999875 34567889999999999998855 8999999999
Q ss_pred eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe---ecccCCceeEEEecC
Q 001159 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY---SGFRKRSLGVVQFDT 598 (1135)
Q Consensus 522 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~~~~v~~i~~s~ 598 (1135)
+|++||+.++.....+..|...|.+++|+|++++|++++. |++|++||.......... .+|.. .|.+++|+|
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~ 527 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSP 527 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeC
Confidence 9999999999888899999999999999999999999985 889999998765444333 24544 799999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 599 TR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 599 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++ ..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||+|++||+.++
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 87 6899999999999999999999998887754 7999999999999999999999999998766
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=322.14 Aligned_cols=302 Identities=16% Similarity=0.204 Sum_probs=228.5
Q ss_pred EEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001159 580 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 657 (1135)
......|.. .|++++|+| +++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 334455555 799999999 56789999999999999999887766666555666899999998 789999999999999
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
+||+.++. .
T Consensus 191 iwd~~~~~-~---------------------------------------------------------------------- 199 (435)
T 4e54_B 191 LQDFKGNI-L---------------------------------------------------------------------- 199 (435)
T ss_dssp EEETTSCE-E----------------------------------------------------------------------
T ss_pred EeeccCCc-e----------------------------------------------------------------------
Confidence 99985431 0
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 817 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 817 (1135)
......
T Consensus 200 ----------------------------------------~~~~~~---------------------------------- 205 (435)
T 4e54_B 200 ----------------------------------------RVFASS---------------------------------- 205 (435)
T ss_dssp ----------------------------------------EEEECC----------------------------------
T ss_pred ----------------------------------------eEEecc----------------------------------
Confidence 000000
Q ss_pred cCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCc
Q 001159 818 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 896 (1135)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 896 (1135)
..+ ...+.+++|+|++++|++|+ ||.|++||+.+ +.+..+.+|...|++++|+|++..
T Consensus 206 -------------------~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 206 -------------------DTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp -------------------SSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred -------------------CCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCce
Confidence 002 44567789999999999998 89999999864 566788899999999999995556
Q ss_pred EEEEEeCCCcEEEEEcccceeeEE---ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC
Q 001159 897 IIAIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 973 (1135)
Q Consensus 897 ~lasg~~dg~v~iwd~~~~~~~~~---l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 973 (1135)
+|++|+.|+.|++||+.+.+.... ..+|.+.|++++|+|||++|++++.|++|++||+.+++........... ..
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~--~~ 342 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR--HF 342 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--CC
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--cc
Confidence 899999999999999988765443 3679999999999999999999999999999999988754432211110 00
Q ss_pred CCCCceEEEECCCCcEEEEE-------------ecCeEEEEec-CCceeeccCCCCCCCCCEEEE-EEeeCCCEEEEEeC
Q 001159 974 PLVGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFC 1038 (1135)
Q Consensus 974 ~~~~v~~~~~s~dg~~l~~~-------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~-~~s~d~~~l~~~~~ 1038 (1135)
....+..+.|+|++.+++++ .++.|++||. +++.+..+.. +|...|.++ +|+|||++|++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~--~~~~~v~s~~~fspdg~~lasg~- 419 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD--PESSGISSLNEFNPMGDTLASAM- 419 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC--SSCCCCCCEEEECTTSSCEEEEC-
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC--CCCCcEEEEEEECCCCCEEEEEc-
Confidence 01223445667766666653 2357999999 7777766543 457788887 6999999999875
Q ss_pred CCeEEEEECCCceee
Q 001159 1039 DGAIGVFDAETLRFR 1053 (1135)
Q Consensus 1039 dg~I~vwd~~~~~~~ 1053 (1135)
|+.|+||++++|+..
T Consensus 420 d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 GYHILIWSQQEARTR 434 (435)
T ss_dssp SSEEEECCCC-----
T ss_pred CCcEEEEECCcCeee
Confidence 889999999998753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=310.87 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=242.6
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
-++.++||+++ +||+|. |++|+|||+.+|+.... + .+.+|...|++|+|+|+|++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~--~---------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL--L---------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE--E---------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE--E---------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 688775 99999999999976542 0 1457888999999999999999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEee
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~ 506 (1135)
.||.|+|||+.+++.+. .+.+|...|.+++++ +. +|++|+.|+.+++||... ...+..+.+|...+..+.++
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 778999999998886 45 899999999999999876 44567889999999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCc----eeEecCCCCcEEEEEEcCCCCEE-EEEecCCCCCCeEEEEECCCCeEEE
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
|.+ .++++++.|+.+++|+....+. ......+...|.+++|+|++..+ ++++. ..|+.|++||+.+++...
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 865 8999999999999999987653 34567788899999999977654 44432 348899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++.++.+|.. .|.+++|+|+|++|++|+.|++|+||
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 688899999999998865 789999999999999999988754 89999999999999999999999999
Q ss_pred EcCCC
Q 001159 660 ANSDG 664 (1135)
Q Consensus 660 d~~~~ 664 (1135)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=311.60 Aligned_cols=307 Identities=15% Similarity=0.186 Sum_probs=245.9
Q ss_pred eeEEeec-CCCCeeEEEEec-CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp-~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
+....+. |.+.|++++|+| +++ +||+|+.||.|+|||+.+++......... . .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKA--V----CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECE--E----EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccc--c----ccccccccccCCCcEEEEE
Confidence 3444555 999999999999 998 78999999999999999887654311000 0 0011111346999999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC---CCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 416 WGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 416 ~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
|+| ++.+|++++.||.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 78899999999999999999876554 33 37888999999984 44 78999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEe---------------cCCCCcEEEEEEcCCCCE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDY---------------DAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~~~~~ 555 (1135)
.+.+|...|.+++|+|++. .++++++.||.|++||++.... ...+ ..|...|.+++|+|++++
T Consensus 181 ~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 9999999999999998752 3699999999999999987652 2222 467789999999999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccC----CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
|++++. ++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..|..
T Consensus 260 l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 260 LLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp EEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred EEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 999985 88899999999887655443221 1222233334456677778899999999999999999987754
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|.+++|+|++++|++++.||.|++|++.++
T Consensus 336 --~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 336 --TVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp --CEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred --eEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 7999999999999999999999999999887
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=304.79 Aligned_cols=293 Identities=12% Similarity=0.147 Sum_probs=214.7
Q ss_pred cCCEEEEEEecCCCeEEEEEEcCCC-------cEEEEEcCCCee----------eeeecCCCCCeeEEEeeccCCccEEE
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGDDK-------MIKVWDVVAGRK----------QYTFEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1135)
..||++++|+||++ +|++||.|. .|++|++..+.. ...+.+|...|.++++.. ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~----~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK----GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET----TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC----CEEE
Confidence 45899999999998 899987543 599999876532 124667888888887643 5677
Q ss_pred EEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE----EEEe-----ecc
Q 001159 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI----KRTY-----SGF 586 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~-----~~~ 586 (1135)
+|+.++..++|... .++.+++|++.+... +... ..+
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 66554443333211 123344443322111 0111 111
Q ss_pred cCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
. ..+.+++|+|||+++++++ .|++|++||+.+++++..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++
T Consensus 133 ~-~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 133 D-DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp T-CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred c-cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 1 2578899999999987654 7899999999999999888633 369999999999999999865 5666665544
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
......
T Consensus 208 ~~~~~~-------------------------------------------------------------------------- 213 (365)
T 4h5i_A 208 SCIARK-------------------------------------------------------------------------- 213 (365)
T ss_dssp CEEEEE--------------------------------------------------------------------------
T ss_pred cceeee--------------------------------------------------------------------------
Confidence 110000
Q ss_pred ccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecC
Q 001159 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 824 (1135)
Q Consensus 745 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
T Consensus 214 -------------------------------------------------------------------------------- 213 (365)
T 4h5i_A 214 -------------------------------------------------------------------------------- 213 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CC----eEEEEECCCccE----EEEEeCCCCCeEEEEEecCCC
Q 001159 825 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG----KVSLFNMMTFKV----MTMFMSPPPAATFLAFHPQDN 895 (1135)
Q Consensus 825 ~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg----~i~vwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~ 895 (1135)
... .| ...+.+++|+||++++++++ |+ .+++|++..... ...+.+|...|++++|+| ++
T Consensus 214 --------~~~--~~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg 281 (365)
T 4h5i_A 214 --------TDF--DK-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KG 281 (365)
T ss_dssp --------CCC--CT-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TS
T ss_pred --------ecC--CC-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CC
Confidence 000 04 56677788888888887776 54 577888766543 356778999999999999 89
Q ss_pred cEEEEEeCCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 896 NIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
++||+|+.|++|+|||+.+++++..+ .+|.+.|++|+|||||++|||+|.|++|+||++...
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999998875 799999999999999999999999999999999653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=296.13 Aligned_cols=247 Identities=14% Similarity=0.209 Sum_probs=207.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc--cccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--C
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--~ 420 (1135)
|.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|.+.|.+++|+|+ +
T Consensus 8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGGC
T ss_pred CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCcC
Confidence 899999999999998 7899999999999999754 2222 26789999999999874 8
Q ss_pred CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe--eeeeecCC
Q 001159 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH 496 (1135)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h 496 (1135)
++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++||++++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999876421 23367789999999999998 77 89999999999999998763 24567899
Q ss_pred CCCeeEEEeeccC-----------CccEEEEEEcCCeEEEEeCcCCC----ceeEecCCCCcEEEEEEcCCC---CEEEE
Q 001159 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---TRLFS 558 (1135)
Q Consensus 497 ~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~~ 558 (1135)
...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+.+|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999999863 24799999999999999998766 345678899999999999995 78888
Q ss_pred EecCCCCCCeEEEEECCCCe---EEEEe--ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 559 CGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
++. |+.|++||++++. ....+ ..+.. .|.+++|+|++++|++++.||.|++|+...
T Consensus 225 ~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 875 8899999998643 12233 34444 799999999999999999999999999763
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=311.65 Aligned_cols=364 Identities=13% Similarity=0.184 Sum_probs=253.3
Q ss_pred CCcEEEEEcCCCeeeeeecCCCCCeeEEEeec-cCCccEEEEEEcCCeEEEEeCcCCCceeEec-------------CCC
Q 001159 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------APG 541 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------~~~ 541 (1135)
++.+++|++..++....+.+|.+.|.+++|+| ++ .+|++|+.||.|++||+.+......+. .|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 45678898888888889999999999999998 54 899999999999999999877655432 488
Q ss_pred CcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC---CCEEEEEeCCCeEEEEEC
Q 001159 542 NWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg~i~iwd~ 617 (1135)
..|.+++|+| ++.++++++. ++.|++||+.+++.+..+... . .+.++.+++. +.++++++.||.|++||+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 8999999999 7778888875 889999999999998888743 3 6888999885 459999999999999999
Q ss_pred CCCceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccC
Q 001159 618 DNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1135)
.+++.+..+..+.. .|.+++|+|++. ++++++.||.|++||+.++......+..+......
T Consensus 174 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------- 235 (408)
T 4a11_B 174 KSGSCSHILQGHRQ--EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ---------------- 235 (408)
T ss_dssp SSSCCCEEECCCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC----------------
T ss_pred CCcceeeeecCCCC--cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce----------------
Confidence 99999988887654 799999999998 58999999999999998774333333222111000
Q ss_pred CCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceE
Q 001159 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 697 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
........|...|
T Consensus 236 ------------------------------------------------------------------~~~~~~~~~~~~v- 248 (408)
T 4a11_B 236 ------------------------------------------------------------------AVESANTAHNGKV- 248 (408)
T ss_dssp ------------------------------------------------------------------CTTTSSCSCSSCE-
T ss_pred ------------------------------------------------------------------eeccccccccCce-
Confidence 0000011266777
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+++|+|++++|++++.||.+++|++......... .+... .... ............+.++
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~~~-----~~~~-~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN--------------YGKVC-----NNSK-KGLKFTVSCGCSSEFV 308 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC--------------CCCCC-----CCCS-SCCCCEECCSSSSCEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceec--------------ccccc-----cccc-ccceeEEecCCCceEE
Confidence 99999999999999999999999988653321100 00000 0000 1222233334455566
Q ss_pred EEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC-
Q 001159 857 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP- 935 (1135)
Q Consensus 857 a~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~- 935 (1135)
+++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~ 384 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPA 384 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC----------------------
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccc
Confidence 665699999999999999999999999999999999 8999999999999999999999877665443322 22333
Q ss_pred CCCeEEEEcCCCcEEEEeCCC
Q 001159 936 TLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+...+.+.+.|+.+++|+...
T Consensus 385 ~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 385 FEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------
T ss_pred cceeecccCccCceeecCCcc
Confidence 344566777899999998764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=317.81 Aligned_cols=320 Identities=9% Similarity=0.117 Sum_probs=251.0
Q ss_pred ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 452 h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
....|.+++|+|||+ ++||++.|++|+ |...++ .+.+|...|.+++|+|++ .++. |++.+.
T Consensus 14 ~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg---------~~~~---~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE---------FENK---LDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC---------CCCT---TTTSCC
T ss_pred hhccEEEEEECCCCC--EEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC---------Ccce---EEEEeC
Confidence 456799999999999 899999999999 755554 447999999999999854 4555 444444
Q ss_pred CceeEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC----CceeEEEecCCCCEEEEE
Q 001159 532 GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 532 ~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~i~~s~~~~~l~~~ 606 (1135)
+....+. .+...|.+++|||+|.+|++++. ++.|++||... .+..+. |.. ..+.+++|+|||++|++|
T Consensus 75 ~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~----dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 75 QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN----NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp CSSCSSTTSCSCCEEEEEECSSSSCEEEEET----TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred CCceEeecCCCCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 4333333 44778999999999999999985 88999999544 666666 553 259999999999999999
Q ss_pred eCCCeEEEEECCCCce-------EEEEeCC--CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccc
Q 001159 607 GDEFQIKFWDMDNMNM-------LTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~-------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 677 (1135)
+.||+|++||+.++.. +.++..+ ++...|.+++|+|+| +++++.|++|++|++.++.. ...
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-~~~------- 217 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-QPV------- 217 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-CCC-------
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-ccc-------
Confidence 9999999999998763 5666322 234689999999999 88899999999999866510 000
Q ss_pred cccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCC
Q 001159 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1135)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~ 757 (1135)
T Consensus 218 -------------------------------------------------------------------------------- 217 (588)
T 2j04_A 218 -------------------------------------------------------------------------------- 217 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCC
Q 001159 758 PSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINES 837 (1135)
Q Consensus 758 ~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1135)
+ .. + ..+
T Consensus 218 -----------------~-~t------------------L------------------------------------~~~- 224 (588)
T 2j04_A 218 -----------------S-RM------------------I------------------------------------QNA- 224 (588)
T ss_dssp -----------------E-EE------------------E------------------------------------ECC-
T ss_pred -----------------e-ee------------------e------------------------------------ccc-
Confidence 0 00 0 000
Q ss_pred CCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 838 KPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF--HPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 838 ~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
| ...|.+++|+ |+.||++++++|++||+.+++......+|.+.|..++| +| ++..|++++.||+ ++|..+
T Consensus 225 -h-~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-- 296 (588)
T 2j04_A 225 -S-RRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-- 296 (588)
T ss_dssp -C-SSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS--
T ss_pred -c-cCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec--
Confidence 4 6778889999 68999999999999999988775555489999999999 99 8999999999999 999987
Q ss_pred eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe
Q 001159 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 994 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 994 (1135)
.++|+||+..+++. |+++++|+...+. +....+ . ..|.+++|||||+.+|++.
T Consensus 297 --------------~~~~spd~~l~a~~--d~~v~lW~~~g~~------l~~~~~-~---~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 --------------ELHVTADNIIAPYL--EKKFKKWSTIWNE------FNNYET-T---LVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------SEEEECCCSSHHHH--HHHHHHTTTTTTS------SSSSCC-E---EEEEEEEECTTSSEEEEEE
T ss_pred --------------cEEECCCceEEEEc--CCEEEEEECCCCc------eeeecc-c---eEEEEEEECCCCCEEEEEE
Confidence 26699999988875 9999999986554 112222 1 5688999999999999853
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=304.87 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=218.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|..+|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 123347789999999999999999 899999999999999
Q ss_pred cCCCeeeee--ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc----eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 484 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 484 ~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+.+++.... +..|...|.+++|+|++ .+|++++.||.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998875544 46799999999998865 8999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCCCeEEEEEC------------------CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 558 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+++. ++.|++||+ .+++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9975 889999995 46788888988877 899999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999987644 79999999999988877 999999999987
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=292.60 Aligned_cols=288 Identities=15% Similarity=0.187 Sum_probs=248.6
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+...++.+|.+.|.+++| +++ .+|++++.||.|++||+.+......+..|...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677889999999999999 654 79999999999999999888888888889999999999999999999985 8
Q ss_pred CeEEEEECCCC---eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-
Q 001159 567 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 642 (1135)
Q Consensus 567 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~- 642 (1135)
+.|++|++... +.+..+.+|.. .|.+++| +++++++++.||.|++|| .++.+..+..+.. .+.++.|.|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence 88999998754 56777888877 8999999 578999999999999999 6777777876644 799999988
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++.++++++.||.|++||.... ..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~----------------------------------------------------- 177 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IK----------------------------------------------------- 177 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EE-----------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---EE-----------------------------------------------------
Confidence 9999999999999999982110 00
Q ss_pred cccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEe
Q 001159 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
.+
T Consensus 178 ----------------------------------------------------------------------------~~-- 179 (313)
T 3odt_A 178 ----------------------------------------------------------------------------TF-- 179 (313)
T ss_dssp ----------------------------------------------------------------------------EE--
T ss_pred ----------------------------------------------------------------------------EE--
Confidence 00
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h 881 (1135)
. ..| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|
T Consensus 180 -------------------------------~--~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 180 -------------------------------S--GIH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp -------------------------------C--SSC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred -------------------------------e--ccC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 0 003 67788999999998 66666 899999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCcee
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 960 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~ 960 (1135)
...|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.|+.|++||+.+++..
T Consensus 225 ~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 225 ESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999999 67 588999999999999999999999999999999999999998 667899999999999987643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=305.29 Aligned_cols=298 Identities=12% Similarity=0.152 Sum_probs=237.0
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee-cccCCceeEEEecCC---CCEEEEEeCCCe
Q 001159 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTT---RNRFLAAGDEFQ 611 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~i~~s~~---~~~l~~~~~dg~ 611 (1135)
.+.+|...|.+++|+|++..+++++....+++.|++||+.+++...... +|.. .|.+++|+|+ ++++++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS-CEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC-cEEEEEEcCCCCCCceEEEecCCCe
Confidence 3466889999999999998777655322248899999999988765544 4544 8999999998 699999999999
Q ss_pred EEEEECCCCc-eEEEEeCCCCCCCcceEE------EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCC
Q 001159 612 IKFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (1135)
Q Consensus 612 i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1135)
|++||+.+++ .+..+..|.. .|.++. |+|++++|++++.||.|++||+.++......+..+...
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------- 162 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE------- 162 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS-------
T ss_pred EEEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC-------
Confidence 9999999988 8888876654 789985 57899999999999999999998763233322221110
Q ss_pred CCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEe
Q 001159 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 764 (1135)
Q Consensus 685 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~ 764 (1135)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEEE----EecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 765 RLPDSIAASKVVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 765 ~~~~~~~~~~i~~~~~----~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
+...+ .+++ |+++++.+++++.||.|++||+... ..... . .|
T Consensus 163 ------~~~~v-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~~--~--~~- 208 (357)
T 3i2n_A 163 ------NKRDC-WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRWE--T--NI- 208 (357)
T ss_dssp ------CCCCE-EEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEEE--E--EC-
T ss_pred ------CCCce-EEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceeee--c--CC-
Confidence 11233 6666 7899999999999999999976532 21111 1 15
Q ss_pred CCceEEEEeec---CCCEEEEEe-CCeEEEEECCCccEEEEEe-----CCCCCeEEEEEecCCCc-EEEEEeCCCcEEEE
Q 001159 841 EESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-----SPPPAATFLAFHPQDNN-IIAIGMEDSSVQIY 910 (1135)
Q Consensus 841 ~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~-~lasg~~dg~v~iw 910 (1135)
...+.+++|+| ++.++++++ ||.|++||+.+++....+. +|...|++++|+| ++. +|++|+.||.|++|
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEe
Confidence 78999999999 999999998 8999999998876655544 8999999999999 777 89999999999999
Q ss_pred Ecccc-------------------eeeEEecCcCCCeEEEEEcCCCCeEE-EEcCCCcEEEEeCCCCc
Q 001159 911 NVRVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 911 d~~~~-------------------~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~~~~ 958 (1135)
|+.++ +.+..+.+|.+.|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99853 46777889999999999999999998 89999999999998754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-32 Score=314.57 Aligned_cols=300 Identities=11% Similarity=0.191 Sum_probs=233.9
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC------------cc
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------IS 410 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 410 (1135)
+.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.........+ .....+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~--------~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEY--------NVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCE--------EEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccce--------eEecccccccccccccccccccCc
Confidence 34678999999999998 789999999999999998763110000000 0111256787 88
Q ss_pred eEEEEEcCCC--CeEEEEeCCCeEEEEEeCCCCcee------------------------------------ee-eEeec
Q 001159 411 VNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QH-LEIDA 451 (1135)
Q Consensus 411 V~~v~~spd~--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~l~~ 451 (1135)
|.+++|+|++ .+|++++.|+.|++||+.++.... .. ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999997643210 00 11357
Q ss_pred ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-Ceeee-------eecCCCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 452 h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++|+.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 88998 799999999984 44444 3668999999999998632 799999999999
Q ss_pred EEEeCcCCCc----eeEecCCCC------------cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeEEEEeecc
Q 001159 524 KAWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGF 586 (1135)
Q Consensus 524 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~ 586 (1135)
++||+++.+. ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 899999999999999886 38899999997 8888888887
Q ss_pred cCC-----------c---eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----------------------
Q 001159 587 RKR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------- 629 (1135)
Q Consensus 587 ~~~-----------~---v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 629 (1135)
... . +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 530 1 223899999999999999999999999998876422110
Q ss_pred -------CCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 630 -------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 630 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.....|..++|+|++.+||+++.++ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123578899999999999998874 778864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=289.11 Aligned_cols=282 Identities=15% Similarity=0.259 Sum_probs=237.0
Q ss_pred eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC
Q 001159 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 428 (1135)
.++|+|||++ +||+|. |++|+|||+.+++.+... .+.+|...|++++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 677765 999999999999866421 14578899999999999999999999
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCCCCCeeEEEeec
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~ 507 (1135)
||+|++||+.+++.+. .+.+|...+.++.+. +. .+++++.++.+++|+...+ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987665 678999988876654 55 8999999999999998865 45677889999999999987
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCce----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
.+ .++++++.||.|++||+.+++.. .....+...|.+++++|++..++.... ...++.|++||..........
T Consensus 161 ~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 DG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp TS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred CC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 65 89999999999999999876543 355667788999999998776553221 134789999999988877766
Q ss_pred ecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.... .+..+.|+++++.+++++ .|+.|++||+.+++++.++.+|.. .|++++|+|++++|++|+.||+|+|||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 688999999999988765 799999999999999999987754 8999999999999999999999999998
Q ss_pred CCC
Q 001159 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.36 Aligned_cols=243 Identities=13% Similarity=0.089 Sum_probs=200.7
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.+.++|++++|+|+|++||+|+.|+.|++||+.++. ......+.+|...|.+++|+|+++ +|++++.|++|++||+.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC---
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEcC
Confidence 467789999999999999999999999999999862 112236779999999999999998 89999999999999999
Q ss_pred CCe---eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecC-CCCcEEEEEEcCCCCEEEE
Q 001159 486 AGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 486 ~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~~~~~l~~ 558 (1135)
+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 887 667788899999999999854 8999999999999999998773 556666 8999999999999999999
Q ss_pred EecCCCCCCeEEEEECC------------------CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 559 CGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
++. ++.|++||+. .++.+..+ +|.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 164 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 985 7899999985 35566667 6665 8999999999999999999999999999998
Q ss_pred ce----EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 621 NM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 621 ~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+. +..+..|.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 238 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 87 666766644 79999999999999988777665 66654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=299.81 Aligned_cols=250 Identities=18% Similarity=0.292 Sum_probs=207.4
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ +. +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999876432 23468899999999999863 67 799999999999
Q ss_pred EEEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCC---
Q 001159 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 552 (1135)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~--- 552 (1135)
+||+++++ .+..+.+|...|.+++|+|+.++.+|++|+.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999999986678999999999999999987643 2345677888999999997
Q ss_pred --------------CCEEEEEecCCCCCCeEEEEECCCC---eEEEEeecccCCceeEEEecCCC----CEEEEEeCCCe
Q 001159 553 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 611 (1135)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~i~~s~~~----~~l~~~~~dg~ 611 (1135)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888875 889999999765 46777888887 89999999986 88999999999
Q ss_pred EEEEECCCCc----eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 612 IKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 612 i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999987621 12233333 3479999999999999999999999999975
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=306.03 Aligned_cols=273 Identities=21% Similarity=0.317 Sum_probs=238.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|...|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 6678998887 676 789999999999999998876653 6789999999999 889999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee---eeecCCCCCee
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 501 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~ 501 (1135)
+|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.++... ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987655 6789999999999974 4 7999999999999999988765 67789999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+++| ++.++++|+.||.|++||+++.+....+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999998 4678999875 8899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
.+.+|.. .|.+++| +++++++|+.||.|++||+.+++ .+..+..|.. .|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeC
Confidence 9999887 8999998 68899999999999999997765 7777776644 7999999 7889999999
Q ss_pred CCcEEEEEcCCCc
Q 001159 653 DNGIKILANSDGV 665 (1135)
Q Consensus 653 dg~i~iwd~~~~~ 665 (1135)
||.|++||+.+..
T Consensus 404 Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 404 DDTILIWDFLNDP 416 (435)
T ss_dssp SSEEEEEC-----
T ss_pred CCEEEEEECCCCC
Confidence 9999999998763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=296.09 Aligned_cols=279 Identities=9% Similarity=0.098 Sum_probs=239.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC-eE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~-~l 423 (1135)
|.+.|++++|+|+++ +|++|+.||.|+||++.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 889999999999998 688999999999999987762110 001347999999999999999 99
Q ss_pred EEEeCCCeEEEEEe-CCCCceeeeeEeec--ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---------Ceeee
Q 001159 424 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 491 (1135)
Q Consensus 424 as~~~dg~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~~ 491 (1135)
++|+.||.|++||+ .++.. ..+.+ |...|.+++|+| +. +|++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87643 36778 999999999999 77 899999999999999998 77777
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCc--eeEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCC
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+. |...|.+++|+|+ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 777 8999999999864 399999999999999988 443 334556778999999999 9999999975 88
Q ss_pred eEEEEECCCC------eEEEEeecccC--------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCC
Q 001159 568 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGL 632 (1135)
Q Consensus 568 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 632 (1135)
.|++|++... +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~- 295 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED- 295 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-
Confidence 9999999887 77788887743 37999999999999999999999999999999999888765 44
Q ss_pred CCcceEEEcCCCCEEEEEECCCc-EEEEE
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNG-IKILA 660 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~-i~iwd 660 (1135)
.|.+++ |++++|++++.||. .+.+.
T Consensus 296 -~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 -SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred -CceEec--CCCCeEEEEecCCccccccc
Confidence 788888 99999999999998 44443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=305.26 Aligned_cols=297 Identities=13% Similarity=0.174 Sum_probs=242.9
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las 425 (1135)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35567899999876777789999999999965433211 1112678999999999999 9999999
Q ss_pred EeCCCeEEEEEeCCCCce----eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee--cCCCCC
Q 001159 426 AFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAP 499 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 499 (1135)
|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 233478899999999999999843 8999999999999999999999999 889999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCc-EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
|.+++|+|++ .+|++++.||.|++||+++.+....+ ..|... +.+++|+|++++|+++. +...++.|++||++++
T Consensus 179 v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBC
T ss_pred eEEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCccc
Confidence 9999999854 89999999999999999998888777 667664 89999999999988873 1123889999999986
Q ss_pred eE-EEEeecccCCceeEEEecCCCCEEEE-EeCCCeEEEEECCCCce-EEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 578 AI-KRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 578 ~~-~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
.. +..........+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce
Confidence 64 33444333337999999999999975 55799999999999884 555555444568999999999988764 566
Q ss_pred cEEEEEcCCC
Q 001159 655 GIKILANSDG 664 (1135)
Q Consensus 655 ~i~iwd~~~~ 664 (1135)
.+++|++.++
T Consensus 334 ~~~~~~l~~~ 343 (402)
T 2aq5_A 334 IARFYKLHER 343 (402)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEcCCC
Confidence 9999999876
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=296.95 Aligned_cols=281 Identities=16% Similarity=0.251 Sum_probs=226.6
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..+.+++ ..+++++.||.|++|++.. +......... | ...|.+++|+|++++|
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~----------------------~~~~~~~~~~--~-~~~v~~v~~s~~~~~l 149 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADS----------------------GSVSALAETD--E-STYVASVKWSHDGSFL 149 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTT----------------------CCEEEEEECC--T-TCCEEEEEECTTSSEE
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCC----------------------CcEeEeeecC--C-CCCEEEEEECCCCCEE
Confidence 4566654 5588999999999997643 3222221222 5 8899999999999999
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++|+ ||.|++||+.+++.+..+.+|...|.+++|++ ++|++|+.||.|++||+. .+..+..+.+|.+.|.+++|+
T Consensus 150 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 9998 89999999999999999999999999999964 699999999999999999 567788899999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-Ee---cCeEEEEec-CCceee
Q 001159 935 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQISVYDS-KLECSR 1009 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~---d~~v~vwd~-~~~~~~ 1009 (1135)
|++++|++++.|+.|++||+.+++.. ....+|. ..|.+++|+|++..+++ ++ |+.|++||+ ++..+.
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPK-----FTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEE-----EEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCcc-----EEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 99999999999999999999987643 2333444 67999999998765554 53 899999999 777766
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEE--EeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYA--GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~--~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
.+. |...|.+++|+|++++|++ |+.||.|++|++.+++........ .+...+.++.|+| ++.+|+
T Consensus 299 ~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~-dg~~l~ 365 (401)
T 4aez_A 299 TVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP--------AHDTRVLYSALSP-DGRILS 365 (401)
T ss_dssp EEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE--------CCSSCCCEEEECT-TSSEEE
T ss_pred EEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec--------CCCCCEEEEEECC-CCCEEE
Confidence 653 3678999999999999998 558999999999997666543211 1224556889999 789999
Q ss_pred EEecCCcEEEEecCCCccccC
Q 001159 1088 LGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~~~~~~~ 1108 (1135)
+|+.||.|++|++.+++....
T Consensus 366 s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EECTTSEEEEEECCC------
T ss_pred EEeCCCcEEEEECCCCccccc
Confidence 999999999999998875443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=295.13 Aligned_cols=249 Identities=15% Similarity=0.209 Sum_probs=205.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|.+.|.+++|+| ++++
T Consensus 12 H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGNI 73 (316)
T ss_dssp --CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSSC
T ss_pred ccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCCE
Confidence 899999999999998 789999999999999987643110 12678999999999986 4899
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe---eeeeecCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHE 497 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~ 497 (1135)
||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++. ....+.+|.
T Consensus 74 l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~ 150 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAHT 150 (316)
T ss_dssp EEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred EEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence 99999999999999987642 223367789999999999998 66 89999999999999998763 245677899
Q ss_pred CCeeEEEeeccC---------------CccEEEEEEcCCeEEEEeCcCCC---ceeEecCCCCcEEEEEEcCCC----CE
Q 001159 498 APVYSVCPHHKE---------------SIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADG----TR 555 (1135)
Q Consensus 498 ~~v~~i~~~~~~---------------~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~----~~ 555 (1135)
..|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++ ++
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 999999999862 14689999999999999997553 445678899999999999987 78
Q ss_pred EEEEecCCCCCCeEEEEECCCC---e-EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEG---A-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~---~-~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|++++. |+.|++||+.+. . ....+..|.. .|.+++|+|++++|++++.|++|++|+...
T Consensus 231 las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 231 IASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999885 889999998762 1 2234455555 899999999999999999999999999763
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=295.36 Aligned_cols=294 Identities=16% Similarity=0.220 Sum_probs=242.0
Q ss_pred CCcceeeEEeec-CCCCeeEEEEecC---CCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCC
Q 001159 333 DDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 333 d~~~~~~~~~~~-h~~~V~~v~~sp~---g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+..+.+.+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h 85 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH 85 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc
Confidence 345566777777 9999999999999 46 799999999999999987 433211 25679
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEE--ecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~--s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
...|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++||++
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSS
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECC
Confidence 999999999999999999999999999999987644 35679999999999 88887 89999999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCCCE----EEEE
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFSC 559 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~----l~~~ 559 (1135)
+++.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... ++++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 160 SSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999999888664 566666653 578999999999999998766544322 23445666666665544 8887
Q ss_pred ecCCCCCCeEEEEECCCC---eEEEEeecccCC-----------ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001159 560 GTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
+. ++.|++||++.. ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++++..
T Consensus 235 ~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 235 SI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp ET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 74 889999999987 567777777643 599999999999999999999999999999999998
Q ss_pred EeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+..+.. .|.+++|+|++++|++++.|+..+.|++.
T Consensus 311 ~~~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 311 SEQLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ecCCCC--CceEEEECCCCCeEEEEeccccccccccc
Confidence 886644 89999999999999999998865555443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=302.10 Aligned_cols=250 Identities=13% Similarity=0.210 Sum_probs=208.6
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCc--------eeeeeEeeccc------------CCEEEEEEecCC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 465 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~v~~s~d~ 465 (1135)
.|.+.|++++|+|+|++||+|+.||.|+|||+.++.. ......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999997652 22344778998 889999999998
Q ss_pred --CeEEEEEEcCCCcEEEEEcCCCeee---------------------------------------ee-ecCCCCCeeEE
Q 001159 466 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 503 (1135)
Q Consensus 466 --~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i 503 (1135)
. .|++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 6 7999999999999998775432 12 36799999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE--------ecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEEC
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|+|++ .+|++| .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 999854 899998 899999999985443332 55788899999999998 89999885 889999999
Q ss_pred CCCeE----EEEeecccC-----------CceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCC----
Q 001159 575 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 634 (1135)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1135)
++++. +..+.++.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..|.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788888764 27999999999999999998 9999999997 888888887643111
Q ss_pred ---------cceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 635 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 635 ---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
+..++|+|++++|++++.||.|++||+.++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 2349999999999999999999999999873
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-29 Score=293.48 Aligned_cols=280 Identities=17% Similarity=0.268 Sum_probs=229.6
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..++|++++ +++.+.|++|+|||.. +|.+... +....| ...|++++|+|||++|
T Consensus 109 ~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 109 NLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEYISSVAWIKEGNYL 162 (420)
T ss_dssp BCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCCEEEEEECTTSSEE
T ss_pred eeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCcEEEEEECCCCCEE
Confidence 778999865 4455569999999653 4433321 222236 7889999999999999
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s 934 (1135)
|+|+ ||+|+|||+.+++++..+.+|...+.++++++ .+|++|+.|+.+++||.... ..+..+.+|...+..+.|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 9999 99999999999999999999999999988864 69999999999999998864 4567889999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEE-EEE---ecCeEEEEec-CCceee
Q 001159 935 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL-LVV---HESQISVYDS-KLECSR 1009 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~---~d~~v~vwd~-~~~~~~ 1009 (1135)
|+++++++++.|+.+++|+..+++.... .+.....+. ..|..++|+|++..+ +++ .|+.|++||+ ++.+..
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred CCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 9999999999999999999988764322 222333444 689999999987644 443 4899999999 777666
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEEEe--CCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
.+.. ...+.++.|+++++.+++++ .||.|+|||+.+++++.++.+|. ..+.+++|+| ||.+|+
T Consensus 316 ~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~----------~~V~~l~~sp-dg~~l~ 380 (420)
T 4gga_A 316 AVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT----------SRVLSLTMSP-DGATVA 380 (420)
T ss_dssp EEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS----------SCEEEEEECT-TSSCEE
T ss_pred eecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC----------CCEEEEEEcC-CCCEEE
Confidence 6543 45799999999999988765 79999999999999999888653 4567899999 789999
Q ss_pred EEecCCcEEEEecCCCc
Q 001159 1088 LGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~~~ 1104 (1135)
||+.||+|++||+.+.+
T Consensus 381 S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 381 SAAADETLRLWRCFELD 397 (420)
T ss_dssp EEETTTEEEEECCSCSS
T ss_pred EEecCCeEEEEECCCCC
Confidence 99999999999997654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=280.35 Aligned_cols=282 Identities=15% Similarity=0.240 Sum_probs=225.9
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
..+++||+++ .|+++. |++|++||+.+++.++.+..+. ...|.+++|+|+++++++|+.||+|++||+.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4678999886 666654 7899999999999998876542 23799999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+..+..|.. .+ ..+++++..+++++.++.+++|+..........+.+
T Consensus 102 ~~~~~~h~~--~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 148 (318)
T 4ggc_A 102 LRNMTSHSA--RV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----------------------------- 148 (318)
T ss_dssp EEEEECCSS--CE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC-----------------------------
T ss_pred EEEecCccc--eE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC-----------------------------
Confidence 999987744 34 456667789999999999999998765322222221
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 782 (1135)
|...+ ..+.++
T Consensus 149 --------------------------------------------------------------------~~~~~-~~~~~~ 159 (318)
T 4ggc_A 149 --------------------------------------------------------------------HSQEV-CGLRWA 159 (318)
T ss_dssp --------------------------------------------------------------------CSSCE-EEEEEC
T ss_pred --------------------------------------------------------------------ccCce-EEEEEc
Confidence 34455 889999
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEE---EE
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM---SA 859 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la---~~ 859 (1135)
++++++++++.||.|++||+...+.... ... ... .| ...|.+++++|++..++ ++
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------~~~-~~~--~~-~~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWV------------------PLQ-TFT--QH-QGAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSC------------------CSE-EEC--CC-CSCEEEEEECTTSTTEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCccccc------------------cee-eec--cc-CCceEEEEecCCCCcEEEEEec
Confidence 9999999999999999998764321100 000 011 14 78899999999776443 33
Q ss_pred e-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC
Q 001159 860 S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 860 ~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 936 (1135)
+ ++.|++||........... +...+..++|+| ++..+++++ .|+.|++||+.+++++.++.+|.+.|++|+|+||
T Consensus 218 ~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp TTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 3 6899999999888776655 777899999999 666666554 7999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCCC
Q 001159 937 LNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
+++|||+|.|++|+|||+...
T Consensus 296 g~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SSCEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=288.78 Aligned_cols=253 Identities=12% Similarity=0.167 Sum_probs=217.8
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEec--CCCeEEEEEEcCCCcE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i 479 (1135)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| ++. +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47799999999999999999999999999999999976432 34446789999999999999 577 89999999999
Q ss_pred EEEEcCCC---------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec------------
Q 001159 480 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 538 (1135)
Q Consensus 480 ~iwd~~~~---------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------ 538 (1135)
++||+.++ +.+..+.+|...|.+++|+|+.++.++++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 567888899999999999997335899999999999999998876544322
Q ss_pred -CCCCcEEEEEEcCC---CCEEEEEecCCCCCCeEEEEECCCCeE--EEEeecccCCceeEEEecCCC----CEEEEEeC
Q 001159 539 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 608 (1135)
Q Consensus 539 -~~~~~i~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~i~~s~~~----~~l~~~~~ 608 (1135)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889998875 77888888877765 677778777 89999999998 79999999
Q ss_pred CCeEEEEECCCC----------------------------------------------ceEEEEeCCCCCCCcceEEEcC
Q 001159 609 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
||.|++||+..+ +.+..+..|. ..|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN--GEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS--SCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc--ccEEEEEEcC
Confidence 999999999875 4555555553 4799999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999887
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=293.88 Aligned_cols=233 Identities=17% Similarity=0.305 Sum_probs=210.1
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ +|++|+.||+|++||+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEECC
Confidence 47778999887 89999999999999999999987655 77899999999999 677 89999999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce---eEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
+++.+..+.+|...|.+++|++ ..+++|+.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~- 274 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG- 274 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-
T ss_pred CCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-
Confidence 9999999999999999999953 68999999999999999987765 567788999999999 7889999875
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
++.|++||+++++.+..+.+|.. .|.++.++ ++++++|+.||.|++||+.+++.+..+..|.. .|.+++|
T Consensus 275 ---dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~-- 344 (435)
T 1p22_A 275 ---DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF-- 344 (435)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--
T ss_pred ---CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--
Confidence 88999999999999999999887 89999884 68999999999999999999999999987654 7899988
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.+|++|+.||.|++||+.++
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHH
T ss_pred cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=284.87 Aligned_cols=260 Identities=11% Similarity=0.145 Sum_probs=219.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+++
T Consensus 10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCSE
T ss_pred cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCCE
Confidence 899999999999998 789999999999999987643211 0112568999999999999 6999
Q ss_pred EEEEeCCCeEEEEEeCCCCc------eeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 423 LGVAFSKHIVHLYTYNPTGE------LRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~------~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|++|+.||.|++||+.++.. ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999988642 1334467889999999999999 88 89999999999999999887655443
Q ss_pred -------------CCCCCeeEEEeecc-CCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCC----C
Q 001159 495 -------------GHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG----T 554 (1135)
Q Consensus 495 -------------~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~----~ 554 (1135)
+|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 68889999999986 1247999999999998888777665 45677888999999999998 7
Q ss_pred EEEEEecCCCCCCeEEEEECCCC----------------------------------------------eEEEEeecccC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFRK 588 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~~ 588 (1135)
+|++++. |+.|++||++++ +.+..+.+|..
T Consensus 232 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 232 LIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp EEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred EEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 8888875 889999999875 66777888877
Q ss_pred CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 589 ~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.|.+++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 308 -~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 308 -EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred -cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 89999999999999999999999999999887665543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=289.48 Aligned_cols=258 Identities=15% Similarity=0.210 Sum_probs=214.3
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCC--ccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++..+. |.+.|++++|+|+|+ +||+|+.||.|+|||+.. ++.+. .+.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEE
Confidence 445566 999999999999998 789999999999999974 33322 2678999999999
Q ss_pred EcCC--CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe--e
Q 001159 416 WGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--K 489 (1135)
Q Consensus 416 ~spd--~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~ 489 (1135)
|+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 99999999999999999998752 233367789999999999999 88 89999999999999998873 3
Q ss_pred eeeecCCCCCeeEEEeeccC-----------CccEEEEEEcCCeEEEEeCcCCCce----eEecCCCCcEEEEEEcCC--
Q 001159 490 QYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD-- 552 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~-- 552 (1135)
...+.+|...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45667899999999999842 4589999999999999999876643 466778999999999999
Q ss_pred -CCEEEEEecCCCCCCeEEEEECCCCe---EEEEee--cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 553 -GTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS--GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 553 -~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~--~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+++|++++. ++.|++||+.++. ....+. .+.. .|.+++|+|++++|++++.||.|++|++.......
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 899999875 8899999999864 222222 2444 79999999999999999999999999998654433
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=289.23 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=218.6
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~i 481 (1135)
+.+|...|++++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ +. +|++|+.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 67899999999999999999999999999999998432 2333477899999999999987 77 8999999999999
Q ss_pred EEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcC------
Q 001159 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 551 (1135)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 551 (1135)
||+.+++ .+..+.+|...|.+++|+|+.++.++++++.||.|++||+.... ....+..|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 77888899999999999997435899999999999999998874 3446678888999999999
Q ss_pred -------CCCEEEEEecCCCCCCeEEEEECCCCe----EEEEeecccCCceeEEEecCC---CCEEEEEeCCCeEEEEEC
Q 001159 552 -------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 552 -------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg~i~iwd~ 617 (1135)
++.++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ +++|++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999975 8899999998754 4567777776 8999999999 899999999999999999
Q ss_pred CCCc---eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 618 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 618 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++. ....+....+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9865 3333344334558999999999999999999999999998754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=281.88 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=211.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|.+.|++++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987633333356689999999999999872 378999999999999
Q ss_pred c-CCCeeeeeecC--CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC---------CCceeEecCCCCcEEEEEEcC
Q 001159 484 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 551 (1135)
+ .+++. ..+.+ |...|.+++|+| + .++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999998 4 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEECCC-CeE--EEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCC------c
Q 001159 552 DGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------N 621 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~------~ 621 (1135)
++ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|+++.. +
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 777764 88999999998 543 233334444 899999999 9999999999999999999887 7
Q ss_pred eEEEEeCCCC-------CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 622 MLTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 622 ~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
....+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 7788877643 347999999999999999999999999999877
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=258.80 Aligned_cols=293 Identities=16% Similarity=0.163 Sum_probs=210.4
Q ss_pred EEEEEEe-cCCCeEEEEEEcCCCcEEEEEcCCC---eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 456 VNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 456 v~~v~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
+.++.|- +..+.+.+++++ ...|++|+..++ ++++++..|+.+|..+.+.|+.-+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5666663 345555788888 568999999999 8999999999999999999875422222211
Q ss_pred CceeEecCCCCcEEEEEEcCC----CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe
Q 001159 532 GSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 607 (1135)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence 224457889999999 889998753 26667543 333444432
Q ss_pred --CCCeEEEEEC-CCCceEEEEeCCCCCCCcceEEEcC---CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccC
Q 001159 608 --DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 608 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 5788888888 44777777777755 688899998 7899999999999999999998 55555543321
Q ss_pred CCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccce
Q 001159 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~ 761 (1135)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCC
Q 001159 762 KALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 841 (1135)
+...+ .+++|+|+|..+++++.+..
T Consensus 225 ---------~v~~v-~~vafSpdG~~lvs~s~~~~--------------------------------------------- 249 (356)
T 2w18_A 225 ---------YQASV-CHKAYSEMGLLFIVLSHPCA--------------------------------------------- 249 (356)
T ss_dssp -----------CCC-EEEEEEETTEEEEEEC-------------------------------------------------
T ss_pred ---------ceeee-EEEEECCCCCEEEEeccCCC---------------------------------------------
Confidence 11123 78899999998777654311
Q ss_pred CceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEE-----eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 842 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
...+++|+ |++|++||..+++++..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.++
T Consensus 250 -----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 250 -----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp -------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTC
T ss_pred -----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCC
Confidence 11467787 899999999999988776 367666544444 3679999999999999999999
Q ss_pred eeeEEecCcCCCeE-EEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 916 EVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
+++.++.+|.+.+. +++|||||++|++|+.|++|+|||+
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999988765 5899999999999999999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=287.72 Aligned_cols=299 Identities=11% Similarity=0.055 Sum_probs=234.9
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc---ccccCCceeeccccc----------------------------
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE---RLAHKPFKVWDISAA---------------------------- 395 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 395 (1135)
.++.+++|+|+|+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 56655 47899999999988 3322 211000
Q ss_pred ------------ccchhhhhccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEeC--CCCceeeeeEeecccCCEEEEE
Q 001159 396 ------------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 396 ------------~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~ 460 (1135)
....+.....+|.+.|.+++|+|++++| |+|+.||.|++||+. +++.+.... ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0001111234677789999999999996 889999999999999 776655321 136778999999
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEcCCCeeee----eecCCCCCeeEEEeecc-CCccEEEEEEcCCeEEEEeCcCCCcee
Q 001159 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~ 535 (1135)
|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+|+ ..+.+|++++.|++|++||+.+.....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998887554 78889999999999997 224899999999999999999888777
Q ss_pred E-ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc------------------------CCc
Q 001159 536 D-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRS 590 (1135)
Q Consensus 536 ~-~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1135)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 56889999999999 9999999985 8899999999999988886431 236
Q ss_pred eeEEEecCCCCEEEEEe-CCCeEEEEEC--CCC---ceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC------CCcEEE
Q 001159 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKI 658 (1135)
Q Consensus 591 v~~i~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i 658 (1135)
|..++|+|+++++++++ .|+.|++|++ ..+ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999998 8999999999 555 666777765 36899999996533333332 456888
Q ss_pred EEcCC
Q 001159 659 LANSD 663 (1135)
Q Consensus 659 wd~~~ 663 (1135)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=282.03 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=234.7
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEcCC---CCEEEEEecCCCCCCeEEEEECCC-CeEE-EEeecccCCceeEEEecCCC
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESE-GAIK-RTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~-~~~~-~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|+.........+..|...|.+++|+|+ |++|++++. ++.|++||+.+ +..+ ..+.+|.. .|.+++|+|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~ 98 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSW----ANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWSDDG 98 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEET----TSEEEEEEECTTSCEEEEEEEECSS-CEEEEEECTTS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECC----CCcEEEEEcCCCCceeEEEeccccC-CEEEEEECcCC
Confidence 344555566677889999999999999 599999875 88999999997 5555 77778777 89999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE--cCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccc
Q 001159 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 678 (1135)
++|++++.||.|++||+.+++.+.... + ...|.+++| ++++.+|++++.||.|++||+.++ +....+..+
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~---- 170 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQ-H--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMVLQLP---- 170 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEEEECS----
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeecc-c--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEEEecC----
Confidence 999999999999999999998777543 3 347999999 899999999999999999999876 222222111
Q ss_pred ccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCc
Q 001159 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (1135)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~ 758 (1135)
T Consensus 171 -------------------------------------------------------------------------------- 170 (368)
T 3mmy_A 171 -------------------------------------------------------------------------------- 170 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCC
Q 001159 759 SQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 838 (1135)
Q Consensus 759 ~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1135)
..+ .++.+.+ ..+++++.++.+.+|++..... ........
T Consensus 171 --------------~~~-~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~-- 210 (368)
T 3mmy_A 171 --------------ERC-YCADVIY--PMAVVATAERGLIVYQLENQPS---------------------EFRRIESP-- 210 (368)
T ss_dssp --------------SCE-EEEEEET--TEEEEEEGGGCEEEEECSSSCE---------------------EEEECCCS--
T ss_pred --------------CCc-eEEEecC--CeeEEEeCCCcEEEEEeccccc---------------------hhhhcccc--
Confidence 112 4444443 4578888899999998753211 00000111
Q ss_pred CCCCceEEEEeecCCCE----EEEEe-CCeEEEEECCCc---cEEEEEeCCCC------------CeEEEEEecCCCcEE
Q 001159 839 PTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF---KVMTMFMSPPP------------AATFLAFHPQDNNII 898 (1135)
Q Consensus 839 h~~~~i~~l~~s~dg~~----la~~~-dg~i~vwd~~~~---~~~~~~~~h~~------------~v~~l~~sp~~~~~l 898 (1135)
+ ...+.++++.++... +++++ ||.|++||+... ..+..+.+|.. .|++++|+| ++++|
T Consensus 211 ~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l 288 (368)
T 3mmy_A 211 L-KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTL 288 (368)
T ss_dssp C-SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCE
T ss_pred c-cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEE
Confidence 2 556677777776655 88888 999999999987 66777887776 799999999 89999
Q ss_pred EEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 899 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 899 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++-.
T Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 289 ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 9999999999999999999999999999999999999999999999998666555443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=289.84 Aligned_cols=247 Identities=17% Similarity=0.226 Sum_probs=209.5
Q ss_pred ceEEEEEcCCCCeEE-EEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCC
Q 001159 410 SVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 410 ~V~~v~~spd~~~la-s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....++++|+...++ +++.||.|+||++...... .....+.+|.+.|.+++|+| ++. +|++|+.|++|++||+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 345688999876554 5788999999999664322 23335779999999999999 787 899999999999999998
Q ss_pred C-------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe--cCCCCcEEEEEEcCCCCEEE
Q 001159 487 G-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+ +.+..+.+|...|.+++|+|++. .+|++++.||.|++||+++.+....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 8 66788999999999999998642 59999999999999999999888888 78999999999999999999
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEe-ecccCCceeEEEecCCCCEEEEE---eCCCeEEEEECCCCce-EEEEeCCCCC
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGGL 632 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 632 (1135)
+++. ++.|++||+++++.+..+ .+|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9975 889999999999999998 67776558999999999999998 7999999999998664 333332 223
Q ss_pred CCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCC
Q 001159 633 PASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 664 (1135)
..+.+++|+|++++|++++ .||.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 4689999999999997554 6999999999877
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=276.37 Aligned_cols=283 Identities=13% Similarity=0.143 Sum_probs=217.5
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+++.+.. |.+.|++++|||||+ +||+|+.+| ++||++.+++.... .+...+..+++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~ 66 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRM 66 (355)
T ss_dssp ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEE
T ss_pred CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEE
Confidence 3444445 889999999999998 788888665 78999987765432 12225888999
Q ss_pred cCCCCeEE-EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeec
Q 001159 417 GPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 494 (1135)
Q Consensus 417 spd~~~la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~ 494 (1135)
+++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+.
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEec
Confidence 99998885 56778999999999987655 444 67799999998764 33333 789999999998 7777766
Q ss_pred CCCCCeeEEEeeccCCccEEEE--EEcCCeEEEEeCcCCC----------------ceeEecCCCCcEEEEEEcCCCCEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
. +...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|
T Consensus 138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 4 444555655 34554 6899999999998765 256788999999999999999999
Q ss_pred EEEecCCCCCCe-EEEEECCCCeEEEEee-c-ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE--EE------
Q 001159 557 FSCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TT------ 625 (1135)
Q Consensus 557 ~~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~------ 625 (1135)
++++. |++ |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|++|++||+...... ..
T Consensus 211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EEEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EEEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99985 887 9999999999999998 5 555 8999999999999999999999999999765311 11
Q ss_pred ------------EeCC-CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 626 ------------VDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 626 ------------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+... ........++|+++++.|++++.||.+++|++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1111 11123467999999999999999999999998765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-27 Score=266.53 Aligned_cols=328 Identities=12% Similarity=0.119 Sum_probs=258.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78999999999999999999999988665 48999998865 555 677799999999999888777776555 89999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEE-EEEeCCCeEEEEECCCCceEEEE
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|+|++++|++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999876653 36899999999999988887654 58999999999987 67778999999999999998888
Q ss_pred eCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccc
Q 001159 627 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 705 (1135)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++. ...
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~------------------------------------ 194 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VID------------------------------------ 194 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEE------------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEE------------------------------------
Confidence 7653 46899999999887 566778999999986551 000
Q ss_pred cCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCC
Q 001159 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSG 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg 785 (1135)
.
T Consensus 195 ------------------------------------------------------------------------~------- 195 (391)
T 1l0q_A 195 ------------------------------------------------------------------------T------- 195 (391)
T ss_dssp ------------------------------------------------------------------------E-------
T ss_pred ------------------------------------------------------------------------E-------
Confidence 0
Q ss_pred cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe----C
Q 001159 786 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----G 861 (1135)
Q Consensus 786 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~----d 861 (1135)
.. + ...+.+++|+|+|+++++++ +
T Consensus 196 --------------~~-------------------------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 196 --------------VK-------------------------------------V-EAAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp --------------EE-------------------------------------C-SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred --------------Ee-------------------------------------c-CCCccceEECCCCCEEEEEecCcCC
Confidence 00 1 34566788888888887775 5
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEEcccceeeEEecCcCCCeE---EEEEcC--
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLAFSP-- 935 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~---~l~~s~-- 935 (1135)
+.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|
T Consensus 224 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ 301 (391)
T ss_dssp CEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSC
T ss_pred CcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccc
Confidence 889999999999988888765 589999999 77766 6778899999999999999988877655421 123332
Q ss_pred ----------CC----------CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 936 ----------TL----------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 936 ----------d~----------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
+. ..+...+.|.++++|++..+.... .......|+++|.|.+.
T Consensus 302 ~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 302 PVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC--------------SSSCEECCSSCEEEEEE
T ss_pred ccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC--------------cCCCeEEeCCCceEEEE
Confidence 21 235566678899999998776211 11234679999998876
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=277.15 Aligned_cols=305 Identities=8% Similarity=0.047 Sum_probs=248.7
Q ss_pred CccccCCCc--ceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhc
Q 001159 327 PNVYSQDDL--TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~--~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|.+|.. ..+.+..+.....+.+++|+|++ .++++++.++.|++||+.+++..... ....+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~--------------~~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLS--------------PPEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEEC--------------CCHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeec--------------Ccccc
Confidence 355555553 33667777766778899999955 58888989999999999988765321 11124
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+|...|.+++|+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 5799999999999999999999999999999999877655 56688999999999999984 4467778999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE--------cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
.+++.+..+..+ ..+.+++|+|++ ..+++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 999998888754 458999998865 7888887 5899999999877655544 344578899999999877
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC---------------CCeEEEEECCCCc
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMN 621 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1135)
++.+. .++.|++||+.+++.+..+.. .. .+.+++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV-FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC-CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 65542 488999999999998888763 33 6899999999999988875 5799999999999
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 001159 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 662 (1135)
.+..+..+ ..+.+++|+|++++|++++. |+.|++|++.
T Consensus 393 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888763 25899999999999998875 9999999975
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=282.88 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=217.4
Q ss_pred eEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 339 ~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
....+.|.+.|++++|+|++..++|+|+.+|.|+||++.+....... .....+...+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45566699999999999985568999999999999999762111000 000001122668999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eee
Q 001159 419 DGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 490 (1135)
Q Consensus 419 d~~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 490 (1135)
+++ +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2223467789999999999995443 8999999999999999987 577
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCceeEecCCCCcEEEEEEcCCCC-EEEEEecCCCCCCe
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESH 568 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~~ 568 (1135)
..+..|...|.+++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++ +|++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 78889999999999998653 4799999999999999998 455678888999999999999996 4667764 889
Q ss_pred EEEEECCC--------------CeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC
Q 001159 569 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
|++||+.. ...+..+.+|.. .|.+++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999986 366777778776 899999999998 8999999999999998753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=279.73 Aligned_cols=316 Identities=16% Similarity=0.249 Sum_probs=239.5
Q ss_pred eeEEeecCCCCeeEEEEecCCC---------eEEEEEec----cceEEEEEcCCcccccc----------CCceeecccc
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQ---------TILLVGTN----VGDISLWEVGSRERLAH----------KPFKVWDISA 394 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~---------~lla~g~~----dg~i~iwd~~~~~~~~~----------~~~~~~~~~~ 394 (1135)
..+.+..-.-+..++.|.|+.. ..+++|+. ...|.|+++.-...... ..+..+....
T Consensus 37 ~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~ 116 (430)
T 2xyi_A 37 DLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVC 116 (430)
T ss_dssp EEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC-------------------------
T ss_pred HHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCC
Confidence 3444444455678888888752 35667764 34677776541000000 0000000000
Q ss_pred cccchhhhhccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCC-------CceeeeeEeecccCCEEEEEEecCCC
Q 001159 395 ASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNK 466 (1135)
Q Consensus 395 ~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~v~~s~d~~ 466 (1135)
..+......+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|.+++|+|++.
T Consensus 117 --~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 117 --GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp ---CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred --CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence 11112234579999999999997 789999999999999999862 11233447889999999999999987
Q ss_pred eEEEEEEcCCCcEEEEEcCCCee-------eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC---CceeE
Q 001159 467 QLCIVTCGDDKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVD 536 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~ 536 (1135)
. +|++|+.||.|++||+.++.. ...+.+|...|.+++|+|.. +.++++++.||.|++||+++. .....
T Consensus 195 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 195 G-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp T-EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred C-eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 6 799999999999999987432 45677899999999999853 379999999999999999987 45667
Q ss_pred ecCCCCcEEEEEEcCCCC-EEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEE
Q 001159 537 YDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIK 613 (1135)
Q Consensus 537 ~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~ 613 (1135)
+..|...|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|.. .|.+++|+|+++ .+++++.||.|+
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCE
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEE
Confidence 778999999999999998 4667764 88999999998 567888888877 899999999985 688999999999
Q ss_pred EEECCC--------------CceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCC
Q 001159 614 FWDMDN--------------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 614 iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 664 (1135)
+||+.. .+.+..+..| ...|.+++|+|+++ ++++++.||.|+||++...
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999987 2455555554 34799999999999 9999999999999998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=275.82 Aligned_cols=337 Identities=12% Similarity=0.143 Sum_probs=256.4
Q ss_pred cceEEEE---EcCCCCeEEEEe--------------CCCeEEEEEeC--CCCceeeeeEeecccCCEEEEEEecCCCeEE
Q 001159 409 ISVNRCV---WGPDGLMLGVAF--------------SKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 409 ~~V~~v~---~spd~~~las~~--------------~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~ 469 (1135)
..+..++ |+|+++.++..+ .++.+.+|.++ ++. ......+..+ ..+.+++|+|++. +
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~ 136 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--L 136 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--E
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--E
Confidence 3456666 777766655432 23323455443 332 2223344444 4466999999655 7
Q ss_pred EEEEcCCCcEEEEEcCCCeeee-----eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcE
Q 001159 470 IVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 544 (1135)
+++++.|+.|++||+.+++.+. .+.+|...|.+++|++++ .++++++.|+.|++||+++.+....+..+...+
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 214 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS 214 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence 8889999999999999998887 456899999999997754 899999999999999999988888888888899
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe--------CCCeEEEEE
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWD 616 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--------~dg~i~iwd 616 (1135)
.+++|+|+++.+++++. .++.|++||+++++.+..+..+. .+.+++|+|+++++++++ .||.|++||
T Consensus 215 ~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp EEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred eEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 99999999999876552 37899999999999988887654 589999999999999987 488999999
Q ss_pred CCCCceEEEEeCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCccccc
Q 001159 617 MDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 695 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1135)
+.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 290 ~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~----------------------- 342 (433)
T 3bws_A 290 MDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP----------------------- 342 (433)
T ss_dssp TTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-----------------------
T ss_pred CCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-----------------------
Confidence 99998877764322 57899999999755 56688999999999766 2111110
Q ss_pred CCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccce
Q 001159 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1135)
Q Consensus 696 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1135)
+...+
T Consensus 343 ---------------------------------------------------------------------------~~~~~ 347 (433)
T 3bws_A 343 ---------------------------------------------------------------------------VFDKP 347 (433)
T ss_dssp ---------------------------------------------------------------------------CSSSE
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 11233
Q ss_pred EEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 776 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 776 ~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
.+++|+|+|+.+++++.+.. . .+..+
T Consensus 348 -~~~~~s~dg~~l~~~~~~~~----------------------------------------------~-------~~~~~ 373 (433)
T 3bws_A 348 -NTIALSPDGKYLYVSCRGPN----------------------------------------------H-------PTEGY 373 (433)
T ss_dssp -EEEEECTTSSEEEEEECCCC----------------------------------------------C-------TTTCT
T ss_pred -CeEEEcCCCCEEEEEecCCC----------------------------------------------c-------ccccc
Confidence 78889999887777654310 0 02234
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEccc
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRV 914 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~ 914 (1135)
+++|+ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|+++.
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 45555 89999999999999988886 45799999999 8888888775 99999999863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=268.43 Aligned_cols=329 Identities=11% Similarity=0.054 Sum_probs=210.0
Q ss_pred EEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEE
Q 001159 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
+|++.+...+.....|...|.+++|+|||++|++++ +..+++||..+++.......+ .+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~-----~~~~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILST-----LKSFEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVA 74 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEEC-----SSEEEEEEETTEEEEEEEECS---CCCEEEECTTSSEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEc-----CCEEEEEecCCcceeeeeecC---CeEEEEEcCCCCEEE
Confidence 455555566666678899999999999999999886 334889999988776554432 477788888888874
Q ss_pred -EEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCC
Q 001159 605 -AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 683 (1135)
Q Consensus 605 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 683 (1135)
+++.|++|++||..+++.+..+..+ ..|.++.|+++. ++++ .++.|++||+.++.+.+..+..
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---------- 138 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKVD---APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---------- 138 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEECS---SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----------
T ss_pred EEECCccEEEEEECCCCcEEEEEECC---CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----------
Confidence 5778899999999999999988743 368999998864 4444 3679999998765111111000
Q ss_pred CCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeE
Q 001159 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (1135)
Q Consensus 684 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~ 763 (1135)
T Consensus 139 -------------------------------------------------------------------------------- 138 (355)
T 3vu4_A 139 -------------------------------------------------------------------------------- 138 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcccccceEEEEEEecCCcceeE--ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCC
Q 001159 764 LRLPDSIAASKVVVRLIYTNSGLSLLA--LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 841 (1135)
Q Consensus 764 ~~~~~~~~~~~i~~~~~~s~dg~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 841 (1135)
.. ..+++++ ..+++ ++.+|.|++||+..... .. +..
T Consensus 139 ----------~~-~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~----------------------~~-------~~~ 176 (355)
T 3vu4_A 139 ----------FG-GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS----------------------AT-------TQD 176 (355)
T ss_dssp ----------EE-EEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------
T ss_pred ----------CC-ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc----------------------cc-------ccc
Confidence 00 2233333 22333 34455555554321100 00 000
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccE-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEEcccceeeE
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS-VQIYNVRVDEVKT 919 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~-v~iwd~~~~~~~~ 919 (1135)
... +...... +..+.+|...|++++|+| ++++||+|+.||+ |++||+.+++++.
T Consensus 177 ~~~-----------------------~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 177 QGV-----------------------QQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---------------------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ccc-----------------------cccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 000 0000112 677889999999999999 8999999999998 9999999999999
Q ss_pred Eec-C-cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 920 KLK-G-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 920 ~l~-~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
.+. + |.+.|++++|+||+++|++++.|++|++||+..+.......+.. + +.|. ++ ..
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~----------~----~~~~--~~--~~--- 291 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG----------W----INMK--YF--QS--- 291 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT----------T----EECC--CC--CC---
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc----------e----eecc--cc--cc---
Confidence 998 6 99999999999999999999999999999998754222111100 0 0000 00 00
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
.|.. ....+ ...+..+...++|++||++|++++.||.+++|++..+.
T Consensus 292 --~~~~---~~~~~--~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 292 --EWSL---CNFKL--SVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp --SSCS---EEEEC--CCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred --ccce---eEEEe--ccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0111 00001 11113345679999999999999999999999987543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=270.95 Aligned_cols=278 Identities=10% Similarity=0.075 Sum_probs=227.3
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEeC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~ 438 (1135)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999998876543 3334 458999999999987 566789999999999
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-EEE
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 517 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~ 517 (1135)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..| ..+.+++|+|++ +.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 886554 444444 8999999999994 3467778899999999999998888754 568999998865 555 788
Q ss_pred EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec
Q 001159 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 518 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s 597 (1135)
+.|+.|++||+.+++....+..+ ..+.+++|+|+++++++++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988777766654 45689999999999865442 37899999999999888776543 68899999
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCchhhhhccc
Q 001159 598 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 673 (1135)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999987 68999999999999988887653 47899999999987 56678999999999988 55555554
Q ss_pred cc
Q 001159 674 RA 675 (1135)
Q Consensus 674 ~~ 675 (1135)
+.
T Consensus 285 ~~ 286 (391)
T 1l0q_A 285 GK 286 (391)
T ss_dssp SS
T ss_pred Cc
Confidence 43
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=305.68 Aligned_cols=252 Identities=15% Similarity=0.205 Sum_probs=211.8
Q ss_pred eec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc--cccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 342 ~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
.+. |.+.|++++|+|+|+ ++++|+.||.|+|||+.++ +.+. .+.+|.+.|.+++|+|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECC
T ss_pred ecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecC
Confidence 344 899999999999998 6889999999999999843 3222 2678999999999999
Q ss_pred C--CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe--eeee
Q 001159 419 D--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYT 492 (1135)
Q Consensus 419 d--~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~ 492 (1135)
+ +++|++|+.||.|++||+.++.. .....+.+|...|.+++|+|+ +. .+++|+.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233467789999999999999 88 89999999999999998873 4456
Q ss_pred ecCCCCCeeEEEeeccC-----------CccEEEEEEcCCeEEEEeCcCCCc----eeEecCCCCcEEEEEEcCC---CC
Q 001159 493 FEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSAD---GT 554 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~---~~ 554 (1135)
+.+|...|.+++|+|.. ++.++++|+.||.|++||+++... ...+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 77899999999999842 458999999999999999988743 3467788999999999999 89
Q ss_pred EEEEEecCCCCCCeEEEEECCCCe-----EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
++++++. ++.|++||+.++. .......|.. .|.+++|+|+++++++++.||.|++|++..+.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999975 8899999998864 2222333444 79999999999999999999999999998643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=301.46 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=216.6
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++.. .....+.+|.++|++++|+++ +. +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985322 334478899999999999988 77 899999999999
Q ss_pred EEEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcC-----
Q 001159 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1135)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 551 (1135)
+||+.+++ .+..+.+|...|.+++|+|+.++..+++|+.||.|++||++... ....+..|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77788899999999999997435899999999999999998874 3456678889999999999
Q ss_pred --------CCCEEEEEecCCCCCCeEEEEECCCC----eEEEEeecccCCceeEEEecCC---CCEEEEEeCCCeEEEEE
Q 001159 552 --------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg~i~iwd 616 (1135)
++..+++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999985 889999999877 56677888877 8999999999 89999999999999999
Q ss_pred CCCCceE---EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 617 MDNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.+++.. .......+...|.+++|+|+++++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234457999999999999999999999999999865
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=269.07 Aligned_cols=195 Identities=11% Similarity=0.120 Sum_probs=156.0
Q ss_pred CCceEEEEeec--CCCEEEEEe-CCeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001159 841 EESAACIALSK--NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 841 ~~~i~~l~~s~--dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
...|.+++|+| +++++++++ ||+|++||+.+++.+..... |...|++++|+| ++.+||+|+.||.|++||+.+++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTT
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCC
Confidence 67899999999 999999999 99999999999999777644 455899999999 89999999999999999999998
Q ss_pred ee-EEecC-cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc--eEEEECCCCcEEEE
Q 001159 917 VK-TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE--TKVQFHNDQTHLLV 992 (1135)
Q Consensus 917 ~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~dg~~l~~ 992 (1135)
.+ ..+.+ |.++|++++|+|++.+|++++ |++|++||+.+++.... +.....+. ..+ .+++|+|+|++|++
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA--YPTYTIPE---FKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS--SCCCBC--------CCEEEEECTTSSEEEE
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee--eccccccc---ccccceEEEECCCCCEEEE
Confidence 87 78888 999999999999999999999 55999999998764321 11111121 222 46999999999999
Q ss_pred -Ee-cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEee---CCCEEEEEeCCCeEEEEECCC
Q 001159 993 -VH-ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 993 -~~-d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~---d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+. |+.|+||++ +...... ..++..++|++ +.+.+++++.||.+.++-...
T Consensus 278 ~s~~d~~i~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 278 YSNESNSLTIYKFDKKTKNWT-------KDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EETTTTEEEEEEECTTTCSEE-------EEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ecCCCCcEEEEEEcccccceE-------ecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 44 999999999 3332211 13577888888 889999999999999886554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-27 Score=272.11 Aligned_cols=285 Identities=10% Similarity=0.060 Sum_probs=226.3
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe---EEEEeecccC------------------------------
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRK------------------------------ 588 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1135)
.++.+++|+++|++|+++. ++.|++||+.+|+ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678899999999777764 6689999999998 6666553321
Q ss_pred -----------------------CceeEEEecCCCCEE-EEEeCCCeEEEEECC--CCceEEEEeCCCCCCCcceEEEcC
Q 001159 589 -----------------------RSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 589 -----------------------~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 158999999999996 888899999999999 888888887544445799999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhh-hccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLR-MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1135)
++++|++++.+|.+++|++.++.. .. ..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~~~-------------------------------------------------- 188 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKFTQ-------------------------------------------------- 188 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSCCC--------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-ccccc--------------------------------------------------
Confidence 999999999999999999876621 10 00
Q ss_pred ccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC---CcceeEecccceee
Q 001159 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS---GLSLLALASNAVHK 798 (1135)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d---g~~l~~~~~dg~i~ 798 (1135)
.....|...| .+++|+|+ +++|++++.|+.|+
T Consensus 189 --------------------------------------------~~~~~h~~~v-~~~~~sp~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 189 --------------------------------------------EPILGHVSML-TDVHLIKDSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp --------------------------------------------CCSEECSSCE-EEEEEEECTTSCEEEEEEETTSCEE
T ss_pred --------------------------------------------eeeecccCce-EEEEEcCCCCCCcEEEEEcCCCcEE
Confidence 0001255666 99999999 99999999999999
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM 877 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 877 (1135)
+||+.. +..+...+.+ | ...|.+++|+ ++++|++++ |++|++||+.+++++..
T Consensus 224 vwd~~~----------------------~~~~~~~~~~--h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 224 ISHYPQ----------------------CFIVDKWLFG--H-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST 277 (450)
T ss_dssp EEEESC----------------------TTCEEEECCC--C-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE
T ss_pred EEECCC----------------------CceeeeeecC--C-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee
Confidence 998643 2222222333 7 8999999999 999999999 99999999999999888
Q ss_pred EeC-------------------------CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEc--ccc---eeeEEecCcCC
Q 001159 878 FMS-------------------------PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV--RVD---EVKTKLKGHQN 926 (1135)
Q Consensus 878 ~~~-------------------------h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~--~~~---~~~~~l~~h~~ 926 (1135)
+.. ....|.+++|+| ++++|++++ .|+.|++|++ .++ +.+..+.+| +
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~ 355 (450)
T 2vdu_B 278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-Y 355 (450)
T ss_dssp EECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-S
T ss_pred ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-C
Confidence 863 235689999999 899999998 8999999999 565 777888888 8
Q ss_pred CeEEEEEcCCCCeEEEEcC-------CCcEEEEeCCC
Q 001159 927 RITGLAFSPTLNALVSSGA-------DAQLCMWSIDK 956 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~-------D~~i~iwd~~~ 956 (1135)
.|.+++|+|++ ++++++. +..|.+|.+..
T Consensus 356 ~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 356 NVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 89999999964 4555432 45588887654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=273.69 Aligned_cols=304 Identities=14% Similarity=0.099 Sum_probs=201.4
Q ss_pred CCCeeEEEE---ecCCCeEEEEEeccceEEEEEcCCccccccC-----Cceeeccccccc-----chhhhhccCCCcceE
Q 001159 346 GSNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAHK-----PFKVWDISAASM-----PLQNALLNDAAISVN 412 (1135)
Q Consensus 346 ~~~V~~v~~---sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 412 (1135)
+....++.| +|++..++++|. ++.|.+|+.......... ....+....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345566666 456655777664 788999986533221110 011111110000 000111234555556
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCcee--eeeEeecccCCEEEEEEec--------CCCeEEEEEEcCCCcEEEE
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~--------d~~~~~l~s~~~d~~i~iw 482 (1135)
...+++++.+||+|+.|++|+|||+.++.... ....+.+|.+.|.+++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66667788899999999999999999876532 2234679999999999998 777 89999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-------------------------e
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------Y 537 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-------------------------~ 537 (1135)
|+.++.++..+.+|..+|.+++|+|.+ ..+|++++.||+|++||+.+.+.... .
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999998888888899999999999864 25899999999999999987654322 1
Q ss_pred cCCCCcEEEEEEc-CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEE------------------EecC
Q 001159 538 DAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV------------------QFDT 598 (1135)
Q Consensus 538 ~~~~~~i~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i------------------~~s~ 598 (1135)
..+...+.++.|+ ++++.+++++. ++.+++||+.++.....+..+.. .+..+ .+++
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 3455577788886 79999999875 88999999998877666655433 22222 2222
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 599 --TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 599 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++.++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233566688999999999999988887776644 799999999999999998775 566654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=268.73 Aligned_cols=267 Identities=8% Similarity=0.052 Sum_probs=212.0
Q ss_pred EEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001159 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 432 (1135)
.+.+++. ++++|+.||.|++||+.+++.+.. +. ...|.++.|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3456675 799999999999999999876643 11 456788889998 9999999999
Q ss_pred EEEEeC---------CCCceeeeeEeecccCCEEEEEEec--CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC-CCCCe
Q 001159 433 HLYTYN---------PTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAPV 500 (1135)
Q Consensus 433 ~iwd~~---------~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v 500 (1135)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++|+.|++|++||+++++.+..+.. |...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999766 3322221 1226778999999999 998 899999999999999999998776644 55689
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-eEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+++|+|++ .+|++|+.||.|++||+++.+.. ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 999999854 89999999999999999998887 67777 899999999999999999987 3389999999987
Q ss_pred EEEEeec---ccCCce--eEEEecCCCCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC---CCCEEEE
Q 001159 579 IKRTYSG---FRKRSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 649 (1135)
Q Consensus 579 ~~~~~~~---~~~~~v--~~i~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~ 649 (1135)
.+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++......... .++..+.|.+ +...+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7655543 222 33 36999999999999988 999999999765543333 1466778888 8889999
Q ss_pred EECCCcEEEEEcC
Q 001159 650 TTSDNGIKILANS 662 (1135)
Q Consensus 650 ~~~dg~i~iwd~~ 662 (1135)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999988543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=242.86 Aligned_cols=285 Identities=14% Similarity=0.074 Sum_probs=194.0
Q ss_pred eeEEEEe-cCCCeEEEEEeccceEEEEEcCCc---cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 349 VMSMDFH-PQQQTILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 349 V~~v~~s-p~g~~lla~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|.++-|- +..+.+.+.......|++|+..++ +.+++ ..+|..+|..+.++||-.-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence 4455553 344433333334679999999988 54443 445666777777777544322
Q ss_pred EE-eCCC-eEEEEEeC--CC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEc-CCCeeeeeecCC
Q 001159 425 VA-FSKH-IVHLYTYN--PT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDV-VAGRKQYTFEGH 496 (1135)
Q Consensus 425 s~-~~dg-~i~iwd~~--~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~~h 496 (1135)
.. -.+= .-.++-+. .. +.+.+...-.+|...|.++ ++++ ++.+++ .|+.|++|++ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 21 1111 01111111 00 1111111223344444443 4554 455533 6999999999 458888888899
Q ss_pred CCCeeEEEeec-cCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC---cEEEEEEcCCCCEEEEEec--------CCC
Q 001159 497 EAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTRLFSCGT--------SKE 564 (1135)
Q Consensus 497 ~~~v~~i~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~--------~~~ 564 (1135)
...+..++|++ .+++..|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|.++++++. .+.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999999 66779999999999999999999999988876543 6778899999998865431 123
Q ss_pred CCCeEEEEECCCCeEEEEe-----ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 565 GESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
.|++|++||..+++.+..+ .+|.. .+.+..++ +..+++++.|++|+|||+.+++.+.++.+|... .+.+++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~-vvs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ-HWSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--C-CCCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC-eEEEEE
Confidence 5889999999999988766 25544 33333443 788999999999999999999999999876441 344689
Q ss_pred EcCCCCEEEEEECCCcEEEEEc
Q 001159 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
|+|||++|++|+.|++|+|||.
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999985
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=268.87 Aligned_cols=341 Identities=10% Similarity=0.126 Sum_probs=253.4
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEEC--CCCceEEEE
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM--DNMNMLTTV 626 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~ 626 (1135)
++|++..+++++. ++.|.+||..+++++.++..+. .+..++|+|+|+++++++.|+.|++||+ .+++.+.++
T Consensus 145 ~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred cCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 7788877777654 7899999999999999998544 3788999999999999999999999999 888888888
Q ss_pred eCCCCCCCcceEEEcC----CCCEEEEEEC-CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccc
Q 001159 627 DADGGLPASPRLRFNK----EGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 701 (1135)
.... .+..++|+| ||+++++++. +++|.+||..++ +.++.+..+.....
T Consensus 219 ~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~---------------------- 272 (543)
T 1nir_A 219 KIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVD---------------------- 272 (543)
T ss_dssp ECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSS----------------------
T ss_pred ecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccC----------------------
Confidence 7432 478999999 9999998885 899999998877 44433322110000
Q ss_pred cccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccc-cceEEEEE
Q 001159 702 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA-SKVVVRLI 780 (1135)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 780 (1135)
. ...|. ..+ ..+.
T Consensus 273 ---------------------------------------------------------~--------~~~~~~~~v-~~i~ 286 (543)
T 1nir_A 273 ---------------------------------------------------------T--------QTYHPEPRV-AAII 286 (543)
T ss_dssp ---------------------------------------------------------S--------CCEESCCCE-EEEE
T ss_pred ---------------------------------------------------------c--------cccccCCce-EEEE
Confidence 0 00011 244 8899
Q ss_pred EecCCccee-EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEE
Q 001159 781 YTNSGLSLL-ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 859 (1135)
Q Consensus 781 ~s~dg~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~ 859 (1135)
++|++..++ +...++.|.+||+..... +....+. + ...+..++|+|||++++++
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~---------------------l~~~~i~---~-~~~~~~~~~spdg~~l~va 341 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDN---------------------LTVTSIG---A-APFLHDGGWDSSHRYFMTA 341 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSS---------------------CEEEEEE---C-CSSCCCEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCc---------------------ceeEEec---c-CcCccCceECCCCCEEEEE
Confidence 999876655 455689999998653211 0000011 2 4456789999999988766
Q ss_pred e--CCeEEEEECCCccEEEEEeC----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-------ceeeEEecCcC
Q 001159 860 S--GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV-------DEVKTKLKGHQ 925 (1135)
Q Consensus 860 ~--dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~ 925 (1135)
+ +++|.+||+.+++++..+.. |.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.
T Consensus 342 ~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 342 ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred ecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 5 78999999999999998874 55444443 5784577778775 689999999998 89999999999
Q ss_pred CCeEEEEEcCCCCeEEEEc-------CCCcEEEEeCCCCceecee-eeecCCCCCCCCCCceEEEECCCCcEEEEE----
Q 001159 926 NRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSR-FIQAPAGRQSPLVGETKVQFHNDQTHLLVV---- 993 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~-------~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~---- 993 (1135)
+.+..++|+||+++|++++ .+++|.+||+.+++..... .+....+.......+..++|+|||+++.++
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 9999999999999999987 2679999999998865221 121100111112568899999999999874
Q ss_pred --ecCeEEEEec-CCceeeccCC
Q 001159 994 --HESQISVYDS-KLECSRSWSP 1013 (1135)
Q Consensus 994 --~d~~v~vwd~-~~~~~~~~~~ 1013 (1135)
.++.|.|||. +++++..+..
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCCeEEEEECCCceEEEeecC
Confidence 2689999999 7777776653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=263.05 Aligned_cols=324 Identities=12% Similarity=0.131 Sum_probs=252.7
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeC--cCCCceeEec
Q 001159 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDYD 538 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~ 538 (1135)
|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|++ ++|++++.|++|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 778886 889999999999999999999999984333 8899998855 89999999999999999 7766666666
Q ss_pred CCCCcEEEEEEcC----CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc----------cCCceeEEEecCCCCEEE
Q 001159 539 APGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 539 ~~~~~i~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~i~~s~~~~~l~ 604 (1135)
....+..++|+| ||++++++.. .+++|.+||..+++++..+..+ ....+..+.+++++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 456789999999 9999998863 3788999999999999888752 233688899999876654
Q ss_pred -EEeCCCeEEEEECCCCceEE--EEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhcccccccccc
Q 001159 605 -AAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 605 -~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 680 (1135)
+...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+..
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~------- 364 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDV------- 364 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEEC-------
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeecc-------
Confidence 56688999999998876544 4432 22578899999999876655 5889999999877 22211110
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 365 -------------------------------------------------------------------------------- 364 (543)
T 1nir_A 365 -------------------------------------------------------------------------------- 364 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
+. ..|
T Consensus 365 ------------------------g~--------------------------------------------------~ph- 369 (543)
T 1nir_A 365 ------------------------GK--------------------------------------------------TPH- 369 (543)
T ss_dssp ------------------------SS--------------------------------------------------SBC-
T ss_pred ------------------------CC--------------------------------------------------CCC-
Confidence 00 002
Q ss_pred CCceEEEEeecC-CCEEEEEe--CCeEEEEECCC-------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEe-------C
Q 001159 841 EESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------E 903 (1135)
Q Consensus 841 ~~~i~~l~~s~d-g~~la~~~--dg~i~vwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-------~ 903 (1135)
......+ ++|+ |.+++++. |++|.|||+.+ +++++++.+|...+..++|+| ++++|++++ .
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCccc
Confidence 2222222 3565 55666664 68999999988 899999999998999999999 899999987 2
Q ss_pred CCcEEEEEcccceee-EEe--------cCcCCCeEEEEEcCCCCeEEEE-----cCCCcEEEEeCCCCceec
Q 001159 904 DSSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 904 dg~v~iwd~~~~~~~-~~l--------~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iwd~~~~~~~~ 961 (1135)
+++|.+||+.+++.. ..+ ..+...+..++|+|||+.+.++ +.|+.|.|||.++++.+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 779999999998876 443 4567889999999999988866 247999999999988543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=264.78 Aligned_cols=247 Identities=7% Similarity=-0.066 Sum_probs=175.3
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-------
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP------- 418 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp------- 418 (1135)
...+....+++++. ++|+|+.|++|+|||+.+++..... ....+.+|.+.|++++|+|
T Consensus 89 ~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 89 DGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp --------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred CCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccccccC
Confidence 33444444555564 7999999999999999887654211 1123789999999999998
Q ss_pred -CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-----
Q 001159 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----- 492 (1135)
Q Consensus 419 -d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----- 492 (1135)
|+++||+|+.|++|+|||+.++.... .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++....
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~~ 229 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQTE 229 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---------
T ss_pred CCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccccC
Confidence 89999999999999999998876544 56679999999999999865 799999999999999988764332
Q ss_pred --------------------ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEE---
Q 001159 493 --------------------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY--- 549 (1135)
Q Consensus 493 --------------------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--- 549 (1135)
..+|...|.++.|.+. ++..+++++.|+++++||+........+..+...+..+.+
T Consensus 230 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~-dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 230 LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS-DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp -CSCCCSEEEESGGGC------CCSSSCSEEEEETT-TTCEEEEECTTSEEEEEEC-------------------CCSCS
T ss_pred CcccceEEecccccceeeeecccccccceeeeeecC-CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc
Confidence 2367888999998742 5589999999999999999877655555444443333332
Q ss_pred ---------------cC-CCCEE-EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 550 ---------------SA-DGTRL-FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 550 ---------------s~-~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
+| .+..+ ++++ .|+.|++||..+++....+.+|.. .|.+++|+|||++|++++.+| +
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs----~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHS----QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEET----TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-E
T ss_pred cccccccCcceeEEEccCCCCEEEEEEC----CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-e
Confidence 22 33444 4444 388999999999998888888877 899999999999999998776 5
Q ss_pred EEEECC
Q 001159 613 KFWDMD 618 (1135)
Q Consensus 613 ~iwd~~ 618 (1135)
.+|.+.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 556543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-24 Score=243.92 Aligned_cols=306 Identities=14% Similarity=0.155 Sum_probs=231.5
Q ss_pred cCCEEEEEEecCCCeEEEEEEc----CCC----cEEEEEc--CCCeee--eeecCCCCCeeEEEeeccC-----------
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 509 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~i~~~~~~----------- 509 (1135)
...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346777889888876 676775 567 9999999 899887 4588898888887766420
Q ss_pred -CccEEEEEEcC------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 510 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 510 -~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.+. ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 45666777888999999999999999887522 3468999999998875 4
Q ss_pred eecccCCceeEEEecCCCCEEE-EEeCCC--eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-CC--cE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 656 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 656 (1135)
+..+.. .+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..+. ..+.+++|+|||++|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCcEE
Confidence 555555 789999999999888 565555 499999998876 4444443 46889999999999998886 44 45
Q ss_pred EEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccc
Q 001159 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.+||+.++. ..
T Consensus 294 ~~~d~~~~~-~~-------------------------------------------------------------------- 304 (415)
T 2hqs_A 294 YKVNINGGA-PQ-------------------------------------------------------------------- 304 (415)
T ss_dssp EEEETTSSC-CE--------------------------------------------------------------------
T ss_pred EEEECCCCC-EE--------------------------------------------------------------------
Confidence 555654431 00
Q ss_pred ccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccccc
Q 001159 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
.
T Consensus 305 -----------------------------------------~-------------------------------------- 305 (415)
T 2hqs_A 305 -----------------------------------------R-------------------------------------- 305 (415)
T ss_dssp -----------------------------------------E--------------------------------------
T ss_pred -----------------------------------------E--------------------------------------
Confidence 0
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-C---CeEEEEECCCccEEEEEeCCCCCeEEEEEec
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 892 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp 892 (1135)
+.. | ...+.+++|+|||++|++++ + ..|++||+.+++. ..+..+. .+.+++|+|
T Consensus 306 -----------------l~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 306 -----------------ITW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP 363 (415)
T ss_dssp -----------------CCC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT
T ss_pred -----------------Eec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC
Confidence 000 2 44566788888888888776 3 4799999998877 4455554 899999999
Q ss_pred CCCcEEEEEeCCC---cEEEEEcccceeeEEecCcCCCeEEEEEcCCCC
Q 001159 893 QDNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 893 ~~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 938 (1135)
++++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus 364 -dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 -NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred -CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 899998888777 79999987 555778999999999999999754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=261.78 Aligned_cols=303 Identities=13% Similarity=0.095 Sum_probs=215.6
Q ss_pred CCCeeEEEEecCCCeEEEEEec-cc-----eEEEEEcCCccccccCCceeec-----ccccccchh-hhhccCCCcceEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWD-----ISAASMPLQ-NALLNDAAISVNR 413 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~h~~~V~~ 413 (1135)
...|.+++|||||+ .|++++. || .|.+||+.+++........... +........ ...+ .....|.+
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCcce
Confidence 35799999999999 5666666 87 9999999988754321000000 000000000 0000 00134889
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCC--ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ +|++++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999987 999999999872 233 4567888899999999999 677777 5699999999988766
Q ss_pred eecCCCCC----------------eeEEEeeccCCccEEEEEEcCC---------------------------------e
Q 001159 492 TFEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG---------------------------------K 522 (1135)
Q Consensus 492 ~~~~h~~~----------------v~~i~~~~~~~~~~l~s~s~dg---------------------------------~ 522 (1135)
....+... +.+++|+|++ ++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444432 4778998855 8888887765 8
Q ss_pred EEEEeCcC-CCceeEec--CCCCcEEEEEEcCCCCEEEEEec-CCCCCCeEEEEECCCCeEEEEeecccCC---ceeEEE
Q 001159 523 IKAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKR---SLGVVQ 595 (1135)
Q Consensus 523 i~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~i~ 595 (1135)
|.+||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||+.+++....+..+... .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 89999987 66544332 35678999999 99999997654 2234678999999999988777765542 245789
Q ss_pred ecCCCCEEEEEeCCCeEEEEECC-CCceEEEEeCCCCCCCcceE-EEcCCCCEEEEEEC-CC--cEEEEEcCC
Q 001159 596 FDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTS-DN--GIKILANSD 663 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~-dg--~i~iwd~~~ 663 (1135)
|+|||+++++++.||.+++|.++ .++ ...+..+. ..+..+ .|+|+++.|+..+. ++ .++||++..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999988889999988888765 344 55555443 357676 59999998765554 44 889998754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=246.12 Aligned_cols=296 Identities=8% Similarity=0.021 Sum_probs=226.5
Q ss_pred CCeeEEEEecCCCeEEEEEe----ccc----eEEEEEc--CCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
..|...+|++.|..++++|+ .+| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888999999988888886 457 8999999 8887653211 3456666666666
Q ss_pred cC--------------CCCeEEEEeCC------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 417 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 417 sp--------------d~~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
++ .+..++.++.+ +.|++||+.++ ..+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 54 26677776654 79999999853 333 5678999999999999999 78888877
Q ss_pred C---cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEE-EEEcCCe--EEEEeCcCCCceeEecCCCCcEEEEEEc
Q 001159 477 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 477 ~---~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s 550 (1135)
+ .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 566788899999999865 6666 6766655 99999987654 5666777889999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC---CeEEEEECCCCceEEEEe
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 627 (1135)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998763 223457999999888743 3444443 78889999999999987754 58999999988764 343
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEECCC---cEEEEEcCCCchhhhhcccccccc
Q 001159 628 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 628 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 678 (1135)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+ ..+.+..+...+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v 400 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQV 400 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEE
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCC
Confidence 33 2 688999999999999998877 7999998754 344555555444
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=257.94 Aligned_cols=328 Identities=10% Similarity=0.032 Sum_probs=238.4
Q ss_pred cCCEEEEEEecCCCeEEEEEEcC-CC-----cEEEEEcCCCeeeeeecCCCC------------------------CeeE
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEA------------------------PVYS 502 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~ 502 (1135)
...|.+++|+|||+ +|++++. |+ .|++||+.+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44699999999999 7888887 88 999999999987766654433 3788
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
++|+|++ ++|++++. +.|++||+.++. ....+..+...+.+++|||||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 9998855 88888886 999999998873 4445666777899999999999999886 458999999998876
Q ss_pred EEeecccCC---------------ceeEEEecCCCCEEEEEeCCC---------------------------------eE
Q 001159 581 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 612 (1135)
Q Consensus 581 ~~~~~~~~~---------------~v~~i~~s~~~~~l~~~~~dg---------------------------------~i 612 (1135)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 655443321 146799999999999987665 88
Q ss_pred EEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-----CCcEEEEEcCCCchhhhhccccccccccCCCCCC
Q 001159 613 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 613 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.++. ....+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~--------------- 328 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLA--------------- 328 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEE---------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEE---------------
Confidence 9999998 876554432123346889999 99999987764 4567777765551 00000
Q ss_pred CCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeec
Q 001159 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 329 -------------------------------------------------------------------------------- 328 (741)
T 2ecf_A 329 -------------------------------------------------------------------------------- 328 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEE
Q 001159 767 PDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~ 846 (1135)
....++ | -..+..
T Consensus 329 -----------------------~~~~~~----~----------------------------------------~~~~~~ 341 (741)
T 2ecf_A 329 -----------------------HETSPT----W----------------------------------------VPLHNS 341 (741)
T ss_dssp -----------------------EEECSS----C----------------------------------------CCCCSC
T ss_pred -----------------------EcCCCC----c----------------------------------------CCcCCc
Confidence 000000 0 112335
Q ss_pred EEeecCCCEEEEEe-CCeEEEEECC-CccEEEEEeCCCCCeEEE-EEecCCCcEE-EEEeCCC--cEEEEEccc-ceeeE
Q 001159 847 IALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNII-AIGMEDS--SVQIYNVRV-DEVKT 919 (1135)
Q Consensus 847 l~~s~dg~~la~~~-dg~i~vwd~~-~~~~~~~~~~h~~~v~~l-~~sp~~~~~l-asg~~dg--~v~iwd~~~-~~~~~ 919 (1135)
++|+|||+++++++ +|.++||.+. +++ ...+..|...+..+ +|+| +++.| ++++.++ .++||++.. ++...
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 68888988777776 6766666654 344 67777788888887 5999 67655 4555555 899999874 55566
Q ss_pred EecCcCCCeEEEEEcCCCCeEEEEcCC----CcEEEEeCCCC
Q 001159 920 KLKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 957 (1135)
Q Consensus 920 ~l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iwd~~~~ 957 (1135)
.+.. ...+.+++|||||++|+....+ ..+.+|+...+
T Consensus 420 ~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 420 RLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp ECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred eccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 7765 6678999999999988876544 46889988654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=259.31 Aligned_cols=288 Identities=10% Similarity=0.082 Sum_probs=211.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCc---ceEEEEEcCCCCeEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLG 424 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spd~~~la 424 (1135)
.+.+++|||||+ ++++ +.||.|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 577899999998 5665 6899999999998875432 334443 499999999999999
Q ss_pred EEeCC---------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 425 VAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 425 s~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
+++.+ +.+.+||+.+++. .......+|...+.+++|||||+ .|++++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7889999998765 22222334555689999999999 6777774 7999999999887766655
Q ss_pred CCCCe------------------eEEEeeccCCccEEEEEEcCC----------------------------------eE
Q 001159 496 HEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------KI 523 (1135)
Q Consensus 496 h~~~v------------------~~i~~~~~~~~~~l~s~s~dg----------------------------------~i 523 (1135)
+...+ .+++|+|++ +.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 789998865 8888887653 79
Q ss_pred EEEeCcCCCceeEecCC------CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce----eE
Q 001159 524 KAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----GV 593 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 593 (1135)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887765555544 567899999999998877654434467899999999988776655433233 37
Q ss_pred EEecCCCCEEEE--EeCCC------eEEEEE-CCCCce--EEEEeCCCCCCCcce-EEEcCCCCEEEEEECC---CcEEE
Q 001159 594 VQFDTTRNRFLA--AGDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIKI 658 (1135)
Q Consensus 594 i~~s~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d---g~i~i 658 (1135)
++|+|||+.|+. +..++ .|++|| ...++. ...+... ...+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 899999997775 44666 577777 344441 3334321 123444 6899999999877665 78999
Q ss_pred EEcCCC
Q 001159 659 LANSDG 664 (1135)
Q Consensus 659 wd~~~~ 664 (1135)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 987643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-21 Score=217.24 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=207.9
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC-CC
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 430 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~-dg 430 (1135)
..|.++++.++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777877889999999999999999876543 22344556 9999999997777665 88
Q ss_pred eEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-C--cEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 431 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-K--MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 431 ~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998875 33 4555666665599999999 56655545 3 8999999999988887644 456899998
Q ss_pred ccCCccEEEEEEcCCe-EEEEeCcCCCcee----EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--
Q 001159 507 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 579 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1135)
|++. .++++...++. |.+|+++...... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8652 24555566688 9999998655432 22234456899999999998776653 478899999999888
Q ss_pred -EEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCce--EEEEeCC--CCCC---CcceEEEcCCCCEEEEE
Q 001159 580 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLP---ASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 580 -~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~~~~~~~~~~l~~~ 650 (1135)
+..+.... .+..++|+|+|+++++++ .++.|.+||+.+++. +..+... .... ....++|+|++++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776543 577899999999877655 578899999999887 4444322 1111 12458999999988766
Q ss_pred EC-CCcEEEEEcCCC
Q 001159 651 TS-DNGIKILANSDG 664 (1135)
Q Consensus 651 ~~-dg~i~iwd~~~~ 664 (1135)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=240.00 Aligned_cols=237 Identities=9% Similarity=-0.022 Sum_probs=168.6
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce-eeeeEeeccc-----------------CCEEEEEEecCCCeEEEEE
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~v~~s~d~~~~~l~s 472 (1135)
+..+.|+ |+.+++++.|+ | +||+.+++.+ . .+..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4557888 67777888888 8 9999998762 3 222332 56999999999 5 3444
Q ss_pred EcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-----CCceeEecCCCCc----
Q 001159 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 543 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~---- 543 (1135)
+. |+.|++||+.+++... +..+...+.+++|+|++ +.|+++ .|+.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 5999999999887654 44577788999998865 788874 789999999988 6555433333332
Q ss_pred ----------EEEEEEcCCCCEEEEEecCC-----------------------------CCCCeEEEEECCCCeEEEEee
Q 001159 544 ----------CTMMAYSADGTRLFSCGTSK-----------------------------EGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 544 ----------i~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+.+++|+|||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135789999999988765543
Q ss_pred c-ccCCceeEEEecCCCCEEEEEeCCC-----eEEEEECCCCceEEEEe-CCC--CCCCcceEEEcC--CCCEEEEEECC
Q 001159 585 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-ADG--GLPASPRLRFNK--EGSLLAVTTSD 653 (1135)
Q Consensus 585 ~-~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~~~~~~--~~~~l~~~~~d 653 (1135)
. .....+..++|+|||++|++++.++ .|++||+.+++....+. ... ....+..++|+| ||+++++++.+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233688999999999999987665 89999999984443332 111 111346789999 99999988888
Q ss_pred CcEEEEEcC
Q 001159 654 NGIKILANS 662 (1135)
Q Consensus 654 g~i~iwd~~ 662 (1135)
+.++||.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 888888764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-21 Score=213.51 Aligned_cols=279 Identities=11% Similarity=0.096 Sum_probs=216.6
Q ss_pred eecCCCCeeEEEEecCCCeEEEEEec------cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 342 TLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 342 ~~~h~~~V~~v~~sp~g~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+.+++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~ 95 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGAT 95 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEE
Confidence 33445688999999999966555433 67999999998876543 11 223477899
Q ss_pred EcCCCCeEEEE-eCCCeEEEEEeCCCCceeeeeEeecccC---------CEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 416 WGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 416 ~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|+|+|++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||+.
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 99999966555 557999999999987654 3333322 2789999999995322222568999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC----CCCcEEEEEEcCCCCEEEEEec
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
+++.+..+..+...+.+++|+|++ +++++++.++.|.+||..+.+....+.. +...+..++|+|++++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 999998887666678889998865 7899999999999999998877766554 4456888999999998887753
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
.++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 368899999999999888876442 5689999999776655 78999999999999988887543 4789999
Q ss_pred cCCCCEEEEEECCC
Q 001159 641 NKEGSLLAVTTSDN 654 (1135)
Q Consensus 641 ~~~~~~l~~~~~dg 654 (1135)
+|+|++|+++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999877776553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=242.25 Aligned_cols=241 Identities=11% Similarity=-0.015 Sum_probs=179.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC---CEEEEEEecCCCeEEEEEEcCC---------
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDD--------- 476 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~d--------- 476 (1135)
..+.+++|||||+++++ +.||+|++||+.+++... .+.+|.. .|.+++|||||+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecce
Confidence 34778999999998876 789999999999987543 4555654 499999999999 77777654
Q ss_pred CcEEEEEcCCCeeeeee---cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc----------
Q 001159 477 KMIKVWDVVAGRKQYTF---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW---------- 543 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------- 543 (1135)
+.|++||+.+++. ..+ .+|...+..++|+|++ +.|+.++. +.|++||+.+++.......+...
T Consensus 91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG--~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG--QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp SEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST--TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred eeEEEEECCCCce-EeccCCccccccccccEECCCC--CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 7888999998876 333 3455568899998865 78888876 89999999987766554443332
Q ss_pred --------EEEEEEcCCCCEEEEEecCCC------------------------------CCCeEEEEECCCCeEEEEeec
Q 001159 544 --------CTMMAYSADGTRLFSCGTSKE------------------------------GESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 544 --------i~~~~~s~~~~~l~~~~~~~~------------------------------~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+.+++|||||++|++++.+.. .+..|++||+.+++....+..
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~ 246 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC
Confidence 278999999999998874321 123799999999886666665
Q ss_pred cc-----CCceeEEEecCCCCEEEEEeC----CCeEEEEECCCCceEEEEeCCCCCCCc----ceEEEcCCCCEEEEE--
Q 001159 586 FR-----KRSLGVVQFDTTRNRFLAAGD----EFQIKFWDMDNMNMLTTVDADGGLPAS----PRLRFNKEGSLLAVT-- 650 (1135)
Q Consensus 586 ~~-----~~~v~~i~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~-- 650 (1135)
+. ...+..++|+|||+++++... +..|++||+.+++....+..+.. ..+ ..++|+|||+.|+..
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC-CEEeccCCCceEcCCCCeEEEEEe
Confidence 41 336889999999998877643 36799999999987766543211 122 378999999977754
Q ss_pred ECCC------cEEEEE
Q 001159 651 TSDN------GIKILA 660 (1135)
Q Consensus 651 ~~dg------~i~iwd 660 (1135)
..++ .|.+||
T Consensus 326 ~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSS 341 (723)
T ss_dssp ECCSSSSCEEEEEEEC
T ss_pred cccCCCcceeEEEEEe
Confidence 4566 455565
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=242.31 Aligned_cols=322 Identities=11% Similarity=0.087 Sum_probs=222.6
Q ss_pred EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-eeecCCC-----------------CCeeEEEeeccCCccEEEEE
Q 001159 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHE-----------------APVYSVCPHHKESIQFIFST 517 (1135)
Q Consensus 456 v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~i~~~~~~~~~~l~s~ 517 (1135)
+..+.|. |. .+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|+ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 4457788 55 466666677 8 9999999873 4443332 56999999986 244444
Q ss_pred EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-----CeEEEEeecccCC---
Q 001159 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-----GAIKRTYSGFRKR--- 589 (1135)
Q Consensus 518 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~--- 589 (1135)
.++.|++||+.+++.. .+..+...+.+++|+|||++|+++. ++.|++||+.+ ++.......+...
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3444566788899999999999864 67899999998 7766544443331
Q ss_pred ----------ceeEEEecCCCCEEEEEe---------------------------------CCCeEEEEECCCCceEEEE
Q 001159 590 ----------SLGVVQFDTTRNRFLAAG---------------------------------DEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 590 ----------~v~~i~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 626 (1135)
.+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 147899999999999987 4478999999988765544
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccc
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 701 (1135)
....+...+..++|+|||+.|++++.++ .|.+||+.++.. .+
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~-------------------------------- 298 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VR-------------------------------- 298 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EE--------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-ee--------------------------------
Confidence 3323334688999999999999887665 778887765510 00
Q ss_pred cccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEE
Q 001159 702 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIY 781 (1135)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 781 (1135)
.
T Consensus 299 ----------------------------------------------------------------------------~--- 299 (706)
T 2z3z_A 299 ----------------------------------------------------------------------------T--- 299 (706)
T ss_dssp ----------------------------------------------------------------------------E---
T ss_pred ----------------------------------------------------------------------------E---
Confidence 0
Q ss_pred ecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec--CCCEEEEE
Q 001159 782 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK--NDSYVMSA 859 (1135)
Q Consensus 782 s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~--dg~~la~~ 859 (1135)
+......+ . ...+.+++|+| ||++++++
T Consensus 300 ------~~~~~~~~-------------------------------------------~-~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 300 ------LFVETDKH-------------------------------------------Y-VEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp ------EEEEECSS-------------------------------------------C-CCCCSCCEECTTCSSEEEEEE
T ss_pred ------EEEccCCC-------------------------------------------e-ECccCCceeecCCCCEEEEEE
Confidence 00000000 0 11234568888 88888877
Q ss_pred e-CCeEEEEECC-CccEEEEEeCCCCCeEE-EEEecCCCcEEEEEe-CCC----cEEEEEcccceeeEEecCcCCCeEEE
Q 001159 860 S-GGKVSLFNMM-TFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGM-EDS----SVQIYNVRVDEVKTKLKGHQNRITGL 931 (1135)
Q Consensus 860 ~-dg~i~vwd~~-~~~~~~~~~~h~~~v~~-l~~sp~~~~~lasg~-~dg----~v~iwd~~~~~~~~~l~~h~~~i~~l 931 (1135)
+ ++.++||++. +++.+..+..+...+.. ++|+| +++.|+.++ .++ .|+.||+.+++ ...+. |...+.++
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~ 406 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRT 406 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEE
T ss_pred ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEE
Confidence 7 7778888775 66777788778777876 89999 777665554 444 67777777765 44454 67789999
Q ss_pred EEcCCCCeEEEEcCC----CcEEEEeCCCCc
Q 001159 932 AFSPTLNALVSSGAD----AQLCMWSIDKWE 958 (1135)
Q Consensus 932 ~~s~d~~~l~s~~~D----~~i~iwd~~~~~ 958 (1135)
+|||||++++..+.+ +.|.+||+.+++
T Consensus 407 ~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 407 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999999988876543 459999998876
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-21 Score=212.70 Aligned_cols=241 Identities=13% Similarity=0.137 Sum_probs=172.5
Q ss_pred CCceEEEEeecCCCEEEEEe-C-CeEEEEECC--Ccc--EEEEEeCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEc-
Q 001159 841 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV- 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~- 912 (1135)
...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+.+++|+| ++++|++++. ++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 66788899999999998887 4 899999997 554 344555444 789999999 7887766654 889999999
Q ss_pred --ccceeeEEecCcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCCC-Cceecee--eeecCCCCCCCCCCceEEEECCC
Q 001159 913 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 913 --~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
.+.+.+..+..+ ..+.+++|+||+++|++++ .++.|.+||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 445555666544 4589999999999888777 899999999987 5432211 1222222 35678999999
Q ss_pred CcEEEE-E-ecCeEEEEecCC--ce---eec---cCCCCCCCCCEEEEEEeeCCCEEEE-EeCCCeEEEEECC--C--ce
Q 001159 987 QTHLLV-V-HESQISVYDSKL--EC---SRS---WSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAE--T--LR 1051 (1135)
Q Consensus 987 g~~l~~-~-~d~~v~vwd~~~--~~---~~~---~~~~~~h~~~i~~~~~s~d~~~l~~-~~~dg~I~vwd~~--~--~~ 1051 (1135)
|+++++ + .++.|.+|++.. .. ... +.........+.+++|+|||++|++ +..++.|.+|++. + .+
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 998776 4 578999999932 11 111 1111122346778999999998774 4579999999998 3 33
Q ss_pred eeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEe-cCCcEEEEecC
Q 001159 1052 FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1101 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~v~~W~~~ 1101 (1135)
.+..+..+ ..+..++|+| +|++|++++ .|+.|.+|++.
T Consensus 269 ~~~~~~~~-----------~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 269 KEGFQPTE-----------TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEECS-----------SSCCCEEECT-TSSEEEEECTTTCEEEEEEEE
T ss_pred EeeeecCC-----------CccceEEECC-CCCEEEEecCCCCeEEEEEEc
Confidence 44333321 1255788999 678777777 68999999665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=209.79 Aligned_cols=284 Identities=12% Similarity=0.074 Sum_probs=194.9
Q ss_pred EEecCCcc-eeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEE
Q 001159 780 IYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 858 (1135)
Q Consensus 780 ~~s~dg~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~ 858 (1135)
.|.+++.+ +++...++.|.+||.. +++....... + ...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~---~-~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQITL---G-YDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEEC---C-CCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEEc---c-CCcc-eEEEcCCCCEEEE
Confidence 45555555 5566668999998653 3333222221 2 4455 9999999997777
Q ss_pred Ee--CCeEEEEECCCccE-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEcccceeeEEecCcCCCeEEEE
Q 001159 859 AS--GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLA 932 (1135)
Q Consensus 859 ~~--dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~i~~l~ 932 (1135)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ..+.+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 66 68999999999987 777776766666699999 888888655553 8999999999988887754 4579999
Q ss_pred EcCCCCeEEEE-cCCCc-EEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEec-CCce
Q 001159 933 FSPTLNALVSS-GADAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS-KLEC 1007 (1135)
Q Consensus 933 ~s~d~~~l~s~-~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~-~~~~ 1007 (1135)
|+|||++|+++ ..++. |.+|++.....+.......... ...+..++|+|||++++++ .++.|.+||+ +++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999865554 55688 9999998644322111111111 1356899999999977764 4789999999 5665
Q ss_pred ---eeccCCCCCCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEECCCcee--eeeeCCceeccccccCCCCccEEEEecCC
Q 001159 1008 ---SRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1008 ---~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1135)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+........... ...-.++|+|
T Consensus 211 ~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sp- 282 (331)
T 3u4y_A 211 ITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL---FGANQMALNK- 282 (331)
T ss_dssp CEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG---TTCCCEEECT-
T ss_pred cceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc---ccccceEECC-
Confidence 444432 35667899999999776654 578899999999887 333322100000000 1112478899
Q ss_pred CCCEEEE-EecCCcEEEEecCCCc
Q 001159 1082 EPNQIAL-GMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1082 ~~~~l~s-g~~dg~v~~W~~~~~~ 1104 (1135)
|+++|++ +..++.|.+|++....
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEecCCCCcEEEEEecCCc
Confidence 6677654 5556799999998766
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-20 Score=206.38 Aligned_cols=275 Identities=13% Similarity=0.126 Sum_probs=194.3
Q ss_pred CCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCC-CeEEEE
Q 001159 358 QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLY 435 (1135)
Q Consensus 358 g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d-g~i~iw 435 (1135)
++.++++++.++.|.+|++.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 334666668899999999963 321110 012366778999999999999998886 999999
Q ss_pred EeC--CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---CCeeeeeecCCCCCeeEEEeeccCC
Q 001159 436 TYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 436 d~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~ 510 (1135)
++. ++. ......+..+. .+.+++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|+|++
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg- 140 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN- 140 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-
Confidence 998 443 22333444433 7899999999994 33455568999999994 44455555543 458889998865
Q ss_pred ccEEEEEE-cCCeEEEEeCcC-CCcee----EecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC--CCeE--
Q 001159 511 IQFIFSTA-IDGKIKAWLYDY-LGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI-- 579 (1135)
Q Consensus 511 ~~~l~s~s-~dg~i~iwd~~~-~~~~~----~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~-- 579 (1135)
+++++++ .++.|++||+.+ ++... .... ....+..++|+|+++++++++. .++.|.+||+. +++.
T Consensus 141 -~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 141 -RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp -SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred -CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 6777776 899999999987 43321 2222 3457889999999998876652 37889999995 3433
Q ss_pred EEEeeccc-----CCceeEEEecCCCCEEEEE-eCCCeEEEEECC--C--CceEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001159 580 KRTYSGFR-----KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 580 ~~~~~~~~-----~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 649 (1135)
...+.... ...+..++|+|++++++++ ..++.|++|++. + .+.+..+..+. .+..++|+|++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22332111 1245679999999988754 478999999998 3 34444454432 3789999999998888
Q ss_pred EE-CCCcEEEEEcC
Q 001159 650 TT-SDNGIKILANS 662 (1135)
Q Consensus 650 ~~-~dg~i~iwd~~ 662 (1135)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=208.51 Aligned_cols=301 Identities=10% Similarity=0.055 Sum_probs=204.8
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC--cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc--
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 587 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 587 (1135)
+++++++.++.|.+||+.+.+....+..... .+..++|+|++++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5799999999999999998877766654332 4788999999998876653 36789999999999888776432
Q ss_pred --CCceeEEEecCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 588 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 588 --~~~v~~i~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
...+..++|+|+|+++++++ .++.|.+||+.+++.+..+.... .+.+++|+|++++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11466799999999998886 57999999999998888776532 46889999999988887 6
Q ss_pred CcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcc
Q 001159 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
+.|.+||+.++ +....+..+... ....+.
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~--------------------------------------------------~~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWE--------------------------------------------------AETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTT--------------------------------------------------TTTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccC--------------------------------------------------CCceeC
Confidence 89999999887 332222111000 001122
Q ss_pred ccccccccccc-ccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCc
Q 001159 734 VDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 734 ~~~~~~~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~ 812 (1135)
+++..+..... +....+ + .......++..... .....+.+|
T Consensus 183 ~dg~~l~~~~~~~~~~~~------------------------~-~~~~~~~~~~~~~~-~~~~~v~~~------------ 224 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMAT------------------------P-FYTARKDIDPADPT-AYRTGLLTM------------ 224 (337)
T ss_dssp CBCCCCCCCCTTTTEEEE------------------------E-EEEEBTTSCTTSGG-GEEEEEEEE------------
T ss_pred CCccEEeeeccCCCceee------------------------e-eecccccccccccc-ccccceEEE------------
Confidence 22222211111 000000 0 01111111110000 111134444
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEec
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 892 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp 892 (1135)
|..++......... + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|
T Consensus 225 ----------d~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 289 (337)
T 1pby_B 225 ----------DLETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST 289 (337)
T ss_dssp ----------ETTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT
T ss_pred ----------eCCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC
Confidence 55555443221211 3 5678899999999999988 799999999999988887643 4678999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcccceeeEEecCcC
Q 001159 893 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 925 (1135)
Q Consensus 893 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 925 (1135)
++++|++++.++.|++||+.+++.+..+..+.
T Consensus 290 -dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 290 -DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp -TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred -CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 88888888999999999999999888876553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=208.15 Aligned_cols=257 Identities=12% Similarity=0.116 Sum_probs=190.8
Q ss_pred EEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCC-CCc
Q 001159 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 442 (1135)
Q Consensus 364 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~-~~~ 442 (1135)
.++.++.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34678999999999876542 345788999999999999999986 78999999998 765
Q ss_pred eeeeeEeecc-cCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEc--CCCeeeeeecCCCCCeeEEEeeccCCccEEE-E
Q 001159 443 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 516 (1135)
Q Consensus 443 ~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s 516 (1135)
.. ...+| ...|.+++|+|+++ +|++++ .++...||.+ .++. ...+..+. .+..++|+|++ ..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 33344 36789999999999 677777 3345555554 4444 44554443 48889998865 6555 7
Q ss_pred EEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEE
Q 001159 517 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 517 ~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i 594 (1135)
++.++.+++|+++.. .....+..+...+.+++|+|++++|++++. .++.+.+|++. .+..+..+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344556667778999999999999887652 25567777765 4555666766654 78899
Q ss_pred EecCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 595 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
+|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999987765 569999999887644443222233688999999999998887653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=203.39 Aligned_cols=271 Identities=13% Similarity=0.136 Sum_probs=204.3
Q ss_pred cceEEEEEEecCCcceeEecc-------cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 773 SKVVVRLIYTNSGLSLLALAS-------NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
..+ ..++|+|+|+++++++. ++.|.+|| ..+++...... . ...+.
T Consensus 41 ~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d----------------------~~~~~~~~~~~----~-~~~~~ 92 (353)
T 3vgz_A 41 KGA-YEMAYSQQENALWLATSQSRKLDKGGVVYRLD----------------------PVTLEVTQAIH----N-DLKPF 92 (353)
T ss_dssp SSE-EEEEEETTTTEEEEEECCCTTTEESEEEEEEC----------------------TTTCCEEEEEE----E-SSCCC
T ss_pred cCc-cceEECCCCCEEEEEcCCCcCCCCCccEEEEc----------------------CCCCeEEEEEe----c-CCCcc
Confidence 344 88999999998887764 45677765 34443332211 1 33467
Q ss_pred EEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCC---------eEEEEEecCCCcEEEEEe--CCCcEEEEEc
Q 001159 846 CIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPA---------ATFLAFHPQDNNIIAIGM--EDSSVQIYNV 912 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~---------v~~l~~sp~~~~~lasg~--~dg~v~iwd~ 912 (1135)
.++|+|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||+
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEET
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcC
Confidence 799999999777665 689999999999998888765432 78999999 777776665 4789999999
Q ss_pred ccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 913 RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 913 ~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
.+++.+..+..+...+.+++|+||+++|++++.++.|.+||..+++........ ..++. ..+..++|+|||+++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~---~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGKE---HFFINISLDTARQRAFI 247 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSSC---CCEEEEEEETTTTEEEE
T ss_pred CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCCC---cccceEEECCCCCEEEE
Confidence 999999888867777899999999999999999999999999998755432221 11111 45678999999998877
Q ss_pred E--ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEECCCceeeeeeCCceeccccccC
Q 001159 993 V--HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1068 (1135)
Q Consensus 993 ~--~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
+ .++.|.+||. +++.+..+.... ...++|+|||+++++++ .++.|.+||+.+++.+..+...
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------- 313 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------- 313 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---------
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---------
Confidence 4 3589999999 666666554322 24689999999766555 6899999999999988776533
Q ss_pred CCCccEEEEecCCCCCEEEEEecCC
Q 001159 1069 NTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~l~sg~~dg 1093 (1135)
..+.+++|+| +|++|+.+..++
T Consensus 314 --~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 --THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp --SEEEEEEECT-TSCEEEEEEECC
T ss_pred --CCCCeEEEcC-CCCEEEEEEccc
Confidence 3466889999 677776666654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-19 Score=202.48 Aligned_cols=247 Identities=11% Similarity=0.166 Sum_probs=169.2
Q ss_pred CCceEEEEeecCCCEEEEEe---CCeEEEEECCCcc--EEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcc-
Q 001159 841 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR- 913 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~- 913 (1135)
...+..++|+|||++++++. ++.|++||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 45567899999999444443 3789999997765 4445555777899999999 888888887 78999999996
Q ss_pred cc--eeeEEecC---------cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC-CCceeceeeeecCCCCCCCCCCceEE
Q 001159 914 VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKV 981 (1135)
Q Consensus 914 ~~--~~~~~l~~---------h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 981 (1135)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..+
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~~ 192 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRHL 192 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCceE
Confidence 23 33333322 12348899999999977777788999999998 443222111122222 346789
Q ss_pred EECCCCcEEEEE--ecCeEEEEecC--Ccee---eccCCCC---CCCCCEEEEEEeeCCCEEE-EEeCCCeEEEEECCC-
Q 001159 982 QFHNDQTHLLVV--HESQISVYDSK--LECS---RSWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAET- 1049 (1135)
Q Consensus 982 ~~s~dg~~l~~~--~d~~v~vwd~~--~~~~---~~~~~~~---~h~~~i~~~~~s~d~~~l~-~~~~dg~I~vwd~~~- 1049 (1135)
+|+|||++++++ .++.|.+|++. ...+ ..+.... .....+..++|+|||++|+ +...++.|.+|++..
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999987774 47899999983 2221 1111111 1124588999999999874 556689999999973
Q ss_pred c--eeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC-CcEEEEec--CCCc
Q 001159 1050 L--RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP--SDAE 1104 (1135)
Q Consensus 1050 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g~v~~W~~--~~~~ 1104 (1135)
+ +.+..+..+ ...+..++|+| ||++|++++.+ +.|.+|++ .+++
T Consensus 273 g~~~~~~~~~~~----------~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 273 GHLTLIQQISTE----------GDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GCEEEEEEEECS----------SSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CcEEEeEEEecC----------CCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 333333221 13456889999 77888777755 89999955 4454
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-20 Score=203.86 Aligned_cols=274 Identities=8% Similarity=0.007 Sum_probs=203.6
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCc-ceEEEEEcCCCCeEEE-EeCCCeEEEEEeC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLGV-AFSKHIVHLYTYN 438 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spd~~~las-~~~dg~i~iwd~~ 438 (1135)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|+|+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6888999999999999988765420 112222 4788999999987654 5567899999999
Q ss_pred CCCceeeeeEeec---ccCCEEEEEEecCCCeEEEEEEc------------CCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 439 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 439 ~~~~~~~~~~l~~---h~~~v~~v~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
+++.+... .+.. |...+.+++|+|+|+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88765422 1111 122577899999999 566654 579999999999988877764 4567888
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCC----------------
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 567 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1135)
+|+|++ ++++++ ++.|.+||+.+.+....+..+.. ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 898865 667776 78999999998877665554431 012378999987765542 111
Q ss_pred -------eEEEEECCCCeEEE-EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 568 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 568 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
.|.+||..+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 57999999988752 2223332 67789999999999988 6899999999999888887542 478999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
|+|+|++|++++.++.|.+||+.++ +....+
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~ 317 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQV 317 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEE
Confidence 9999999999988999999999888 444444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=222.86 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=198.6
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC-cceEEEEEcCCCCeEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las 425 (1135)
.+|++++|+|||++++.++..||++.||++.+++... +..|. ..|.+++|||| +++++
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~~ 80 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVILV 80 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEEE
Confidence 4799999999999544444449999999997665432 33444 68999999999 77777
Q ss_pred EeC---CCeEEEEEeCC--CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe
Q 001159 426 AFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 426 ~~~---dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
++. +....+|.+.. ..... .+..+ ..+...+|+||++.+++++++.|+. .+||+.+++.......+ .
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~-~-- 152 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLP-G-- 152 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEES-S--
T ss_pred eccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCC-C--
Confidence 765 45566766654 22222 22222 2345679999998756677766655 49999998766554433 3
Q ss_pred eEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 501 YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+.+
T Consensus 153 ~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTT
T ss_pred ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCC
Confidence 788898865 899988877 78999999877654 56777788999999999999995432 2334899999999
Q ss_pred CeEEEEeecccCCceeEEE--------ecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 577 GAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
++.. .+.++.. .+..++ |+|||..+++++.++.+++|++ ++.... . ...+.+++|+ ++++++
T Consensus 228 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 228 GSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp CCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEEE
T ss_pred CcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEEE
Confidence 8887 6666554 555566 9999988888999999999999 655441 1 1357899999 999998
Q ss_pred EEECCCc---EEEEEcC
Q 001159 649 VTTSDNG---IKILANS 662 (1135)
Q Consensus 649 ~~~~dg~---i~iwd~~ 662 (1135)
+++.+.+ +.+|+..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 8887644 5555543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=231.49 Aligned_cols=377 Identities=12% Similarity=0.053 Sum_probs=238.0
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC--CceeEEEecCCCCEEEEEeC---------CCeEEE
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGD---------EFQIKF 614 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~---------dg~i~i 614 (1135)
.++|+|||++++++ .++.|++||..+++....+..+.. ..+.+++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 277899999999998777765532 13889999999999998876 789999
Q ss_pred EECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc-cccccccccCCCCCCCCCCccc
Q 001159 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML-EGRAMDKNRCPSEPISSKPLTI 693 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 693 (1135)
||+.+++.+...... ..+..++|+|||+.|+++. ++.|++|++.++.. .+.. .++...
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~-~~l~~~~~~~~---------------- 153 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP-FQITFNGRENK---------------- 153 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC-EECCCCCBTTT----------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCc-EEEecCCCcCC----------------
Confidence 999998763111111 2578999999999999886 67999999987732 1111 010000
Q ss_pred ccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccccc
Q 001159 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (1135)
Q Consensus 694 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 773 (1135)
+..+.... ++.-. -..
T Consensus 154 ---------------------------------------------v~~g~~~~--v~~ee-----------------~~~ 169 (719)
T 1z68_A 154 ---------------------------------------------IFNGIPDW--VYEEE-----------------MLA 169 (719)
T ss_dssp ---------------------------------------------EEESSCCH--HHHHH-----------------TTC
T ss_pred ---------------------------------------------eEcccccc--eeeee-----------------ccc
Confidence 00000000 00000 001
Q ss_pred ceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCC
Q 001159 774 KVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 853 (1135)
Q Consensus 774 ~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg 853 (1135)
.. .+++|+|||+.|+.++.| +.... ..........+ ...+..+.+...|
T Consensus 170 ~~-~~~~wSPDG~~la~~~~d----------------------------~~~~~-~~~~~~~~~~~-~~~~~~~~yp~~g 218 (719)
T 1z68_A 170 TK-YALWWSPNGKFLAYAEFN----------------------------DTDIP-VIAYSYYGDEQ-YPRTINIPYPKAG 218 (719)
T ss_dssp SS-CCEEECTTSSEEEEEEEE----------------------------CTTSC-EEEEEECCSSS-SCEEEEEECCBTT
T ss_pred Cc-ccEEECCCCCEEEEEEEC----------------------------CCCCc-eEEeeccCCCC-CccceeecCCCCC
Confidence 11 578899999988877644 11111 11000011112 3445556665554
Q ss_pred CEEEEEeCCeEEEEECCCccEE--------EEEeCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEE----ccccee
Q 001159 854 SYVMSASGGKVSLFNMMTFKVM--------TMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYN----VRVDEV 917 (1135)
Q Consensus 854 ~~la~~~dg~i~vwd~~~~~~~--------~~~~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd----~~~~~~ 917 (1135)
.. ....+|++||+.+++.. ..+.+|...+..++||| |++++++.... ..|++|| +.+++.
T Consensus 219 ~~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 219 AK---NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp SC---CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred CC---CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence 31 01347999999988753 12335777899999999 68877775433 3488999 888887
Q ss_pred eEEe----cCcCCCeE-----EEEEcCCCCeEEE--EcCCC--cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEEC
Q 001159 918 KTKL----KGHQNRIT-----GLAFSPTLNALVS--SGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 918 ~~~l----~~h~~~i~-----~l~~s~d~~~l~s--~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
...+ .+|.+.+. .++|+|||+.|+. ...++ .|.+||+.+++. ..+. .+. ..+..+.++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt---~~~---~~v~~~~~~ 365 (719)
T 1z68_A 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQIT---SGK---WEAINIFRV 365 (719)
T ss_dssp CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EECS---CSS---SCEEEEEEE
T ss_pred EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Eecc---cCc---eEEEEEEEE
Confidence 6666 47777776 8999999996654 44555 466777776552 1111 111 346677777
Q ss_pred CCCcEEEE-Eec-----CeEEEEecC--Cc--eeeccCC-CCCCCCCEEEEEEeeCCCEEEEE-eCC--CeEEEEECCCc
Q 001159 985 NDQTHLLV-VHE-----SQISVYDSK--LE--CSRSWSP-KDALPAPISSAIYSCDGLLVYAG-FCD--GAIGVFDAETL 1050 (1135)
Q Consensus 985 ~dg~~l~~-~~d-----~~v~vwd~~--~~--~~~~~~~-~~~h~~~i~~~~~s~d~~~l~~~-~~d--g~I~vwd~~~~ 1050 (1135)
+++.|+. +.+ +.+++|.+. +. ....+.. ..+|...+..+.||||+++++.. +.+ ..+.+||+.++
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 8888777 443 678899872 22 1222221 12245678899999999877643 333 46899999988
Q ss_pred eeeeeeC
Q 001159 1051 RFRCRIG 1057 (1135)
Q Consensus 1051 ~~~~~~~ 1057 (1135)
+.+..+.
T Consensus 445 ~~~~~~~ 451 (719)
T 1z68_A 445 QEIKILE 451 (719)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 8665443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=199.90 Aligned_cols=255 Identities=9% Similarity=0.042 Sum_probs=187.7
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhc
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
...++.+|..+++......|...|.+++|+|+|+ +|++++ ++.|.+||+.+ ++.... .
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~ 79 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------D 79 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------C
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------c
Confidence 3344555555666666667889999999999999 566665 88999999998 765431 2
Q ss_pred cCC-CcceEEEEEcCCCCeEEEEe--CCCeEEEEEe--CCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 405 NDA-AISVNRCVWGPDGLMLGVAF--SKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 405 ~~h-~~~V~~v~~spd~~~las~~--~dg~i~iwd~--~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
.+| ...|.+++|+|||++|++++ .++...||.+ .++. .. .+..+ ..+.+++|+|+++. ++++++.|+.+
T Consensus 80 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~ 153 (297)
T 2ojh_A 80 TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVF 153 (297)
T ss_dssp CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEE
T ss_pred cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCce
Confidence 233 46789999999999999998 3345555555 4433 22 33333 35999999999994 34478889999
Q ss_pred EEEEcC-CCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCc-CCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
+||++. .+.....+..|...+.+++|+|++ ..++.++ .++.+++|+++ .......+..+...+.+++|+|++++|
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 231 (297)
T 2ojh_A 154 DIYSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKV 231 (297)
T ss_dssp EEEEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEE
T ss_pred EEEEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEE
Confidence 999964 233445677788899999998865 6666655 59999999987 455566777777889999999999999
Q ss_pred EEEecCCC-------CCCeEEEEECCCCeEEE--EeecccCCceeEEEecCCCCEEEEEeCCC
Q 001159 557 FSCGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 557 ~~~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 610 (1135)
++++.+.. ....|++||+.+++... .+.++.. .+..++|+|++++|++++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 232 VFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 98875321 23679999999886543 3445554 788899999999999877553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=199.93 Aligned_cols=311 Identities=14% Similarity=0.118 Sum_probs=196.5
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..+++++++..+++++.++ +++|+........ . .......+........ + .+ ...|.+++|+|+|++|
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~-~~~~~~~~~~~~~~~~----~---~~-~~~v~~l~~spdg~~l 107 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN--K-PGDDPNKIVDKVQGLL----V---PM-KFPIHHLALSCDNLTL 107 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC--C-TTCCTTCEEECCCCEE----E---CC-SSCEEEEEECTTSCEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhc--c-cccCcccccccCcccc----c---cC-CCcccEEEEcCCCCEE
Confidence 7899999999999988887 8888754321100 0 0000000000000000 1 13 6789999999999999
Q ss_pred E----EEe-CCeEEEEECCCc--------c---EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 857 M----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 857 a----~~~-dg~i~vwd~~~~--------~---~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
| +++ |+.|+|||+.++ + .+..+.+|...|.+++|+|+++.+||+++.||+|++||+.++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 9 566 899999998765 2 24556779999999999995489999999999999999999887777
Q ss_pred ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC-CCCCCCceEEEECCCCcEEEEE--ecC-
Q 001159 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLVV--HES- 996 (1135)
Q Consensus 921 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~--~d~- 996 (1135)
..+|...|++++|+|+|++|++++.|++|++||+. ++.... +...... ......+.+++|++++.++++. .+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKV--IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEE--ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccc--ccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 77899999999999999999999999999999998 332221 1111110 0011378999999999998773 332
Q ss_pred -----eEEEEec-CCc-----eeeccCCC----CCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEECCCc---eeeeeeC
Q 001159 997 -----QISVYDS-KLE-----CSRSWSPK----DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETL---RFRCRIG 1057 (1135)
Q Consensus 997 -----~v~vwd~-~~~-----~~~~~~~~----~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~---~~~~~~~ 1057 (1135)
.+++|++ +.+ ....+... .+...+-..+.+-+|.+++++++. .+.|.|...... .....+.
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~ 344 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLE 344 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEEC
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecc
Confidence 3899999 321 11111110 011223233444478887666554 444666665431 1111111
Q ss_pred --CceeccccccCCCCccEEEEe--cCCC------------CCEEEEEecCCcEEEEecCC
Q 001159 1058 --PSAYIPTYAVSNTAHPLVIAP--HPSE------------PNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1058 --~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
....+|.........++.+++ +..+ -=.|..-+.||.+..|.+-.
T Consensus 345 d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 345 DSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp GGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 112223222223344444443 2211 02677778999999998765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=194.25 Aligned_cols=274 Identities=13% Similarity=0.099 Sum_probs=190.2
Q ss_pred CCCCccccCCCcceee--EEeecCCCCeeEEEEecCCCeEEEEEec--cceEEEEEcCCccccccCCceeecccccccch
Q 001159 324 AHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 324 g~~~~~~~~d~~~~~~--~~~~~h~~~V~~v~~sp~g~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
+..+.+|.+|..++++ +....+...+..++|+|||+ +++++.. ++.|.+|++.+++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------- 79 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------------- 79 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence 3345566666655544 33445667889999999998 6666543 689999999766532100
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEe-CCCeEEEEEeCCCCceeeeeEeec---------ccCCEEEEEEecCCCeEE
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~---------h~~~v~~v~~s~d~~~~~ 469 (1135)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ +
T Consensus 80 ---~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l 154 (347)
T 3hfq_A 80 ---TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--L 154 (347)
T ss_dssp ---EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--E
T ss_pred ---eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--E
Confidence 0233567788999999999998888 689999999974433333323321 123488999999999 7
Q ss_pred EEEEcCCCcEEEEEcC-CCeee--eeecCC-CCCeeEEEeeccCCccEEEE-EEcCCeEEEEeCcC--CCce--eEecCC
Q 001159 470 IVTCGDDKMIKVWDVV-AGRKQ--YTFEGH-EAPVYSVCPHHKESIQFIFS-TAIDGKIKAWLYDY--LGSR--VDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~-~~~~~--~~~~~h-~~~v~~i~~~~~~~~~~l~s-~s~dg~i~iwd~~~--~~~~--~~~~~~ 540 (1135)
+++...++.|++||+. +++.. ..+..+ ...+..++|+|++ +++++ +..++.|.+|+++. ++.. ..+...
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 8888889999999998 55432 222222 3367789998865 65544 56789999999885 2221 122221
Q ss_pred C------CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC---CeEEEEeecccCCceeEEEecCCCCEEEEEeC-CC
Q 001159 541 G------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF 610 (1135)
Q Consensus 541 ~------~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg 610 (1135)
. ..+..++|+|||++|+++.. .++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCC
Confidence 1 45889999999998876542 377899999872 245555555443 5788999999999888775 48
Q ss_pred eEEEE--ECCCCceE
Q 001159 611 QIKFW--DMDNMNML 623 (1135)
Q Consensus 611 ~i~iw--d~~~~~~~ 623 (1135)
.|.+| |..+++..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 55566654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=200.19 Aligned_cols=220 Identities=14% Similarity=0.108 Sum_probs=160.1
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE--
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-- 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la-- 424 (1135)
..++.+++++++. ++++|+.+| |+||+........... .+... ...........+...|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 677788777 8998864321110000 00000 00000001123567899999999999999
Q ss_pred --EEeCCCeEEEEEeCCC--------CceeeeeEeecccCCEEEEEEecC-CCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 425 --VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 425 --s~~~dg~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999764 222234456789999999999998 56 8999999999999999999877777
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-------CCcEEEEEEcCCCCEEEEEecCC---
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK--- 563 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~--- 563 (1135)
.+|...|.+++|+|++ .+|++|+.||+|++||++ ......+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 7899999999999864 899999999999999998 4444444333 23899999999988887554321
Q ss_pred CCCCeEEEEECCCC
Q 001159 564 EGESHLVEWNESEG 577 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~ 577 (1135)
+....+++|++...
T Consensus 266 ~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 266 ETSPDVVMALLPKK 279 (434)
T ss_dssp SSCCEEEEEECCCT
T ss_pred CCCCceEEEEeccC
Confidence 11234899999864
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=226.07 Aligned_cols=317 Identities=8% Similarity=0.056 Sum_probs=214.0
Q ss_pred eeeecCCCCCC------ccccCCCcceeeEEeecCCC----CeeEEEEecCCCeEEEEEec---------cceEEEEEcC
Q 001159 317 EVSFAGVAHTP------NVYSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEVG 377 (1135)
Q Consensus 317 ~v~~s~~g~~~------~~~~~d~~~~~~~~~~~h~~----~V~~v~~sp~g~~lla~g~~---------dg~i~iwd~~ 377 (1135)
++.|+|+|+.+ .++.++..+++....+.+.. .|.+++|||||++ ||+++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECC
Confidence 35555655322 23444555666666666332 4999999999995 555554 6899999999
Q ss_pred CccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCE-
Q 001159 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV- 456 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v- 456 (1135)
+++.+... .....+.+++|||||+.||++. ++.|++|++.+++.... ...++...|
T Consensus 99 ~g~~~~~~--------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~ 155 (719)
T 1z68_A 99 NGEFVRGN--------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIF 155 (719)
T ss_dssp TTEECCSS--------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEE
T ss_pred CCccccce--------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeE
Confidence 88763210 0124588999999999999986 78999999988765431 112333323
Q ss_pred ----------------EEEEEecCCCeEEEEEEcCCC----------------------------------cEEEEEcCC
Q 001159 457 ----------------NDIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVVA 486 (1135)
Q Consensus 457 ----------------~~v~~s~d~~~~~l~s~~~d~----------------------------------~i~iwd~~~ 486 (1135)
.+++|||||+ .|++++.|. .|++||+.+
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred cccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 4899999999 677766542 789999988
Q ss_pred Ceee--------eeecCCCCCeeEEEeeccCCccEEEEEEcC----CeEEEEe----CcCCCceeEe----cCCCCcEE-
Q 001159 487 GRKQ--------YTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT- 545 (1135)
Q Consensus 487 ~~~~--------~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~- 545 (1135)
++.. ..+.+|...+.+++|+|+ +.++++.... ..|.+|| ..+++....+ ..+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp HHHHCCEECCCCHHHHTSCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred CCccceeEccCCccCCCCcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 7753 224468889999999997 3677764432 2488888 6665554444 35555565
Q ss_pred ----EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEE
Q 001159 546 ----MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWD 616 (1135)
Q Consensus 546 ----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd 616 (1135)
.++|+|||+.++....+.++...|++||+.+++ ...+..+.. .+..+.++ +++.++..+.+ +..++|.
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 789999999877644444556789999988776 445554443 56677777 88888776654 7888888
Q ss_pred CCC--Cc-eEEEEeCC--CCCCCcceEEEcCCCCEEEEEE-CC--CcEEEEEcCCC
Q 001159 617 MDN--MN-MLTTVDAD--GGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 664 (1135)
Q Consensus 617 ~~~--~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~ 664 (1135)
+.. +. ....+... .+...+..+.|+|++++++... .. ..+.+||+.++
T Consensus 389 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 389 ISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 754 32 12333321 1223567899999998877543 32 46889988776
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=193.50 Aligned_cols=293 Identities=10% Similarity=0.025 Sum_probs=196.2
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc-
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR- 587 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~- 587 (1135)
++.++++++.++.|++||+.+++....+..+. ..+..++|+|++++++++.. .++.|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcccc
Confidence 44789999999999999999887776665443 25678999999998776542 47889999999999888776433
Q ss_pred ----CCceeEEEecCCCCEEEEEeCC------------CeEEEEECCCCce---EEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 588 ----KRSLGVVQFDTTRNRFLAAGDE------------FQIKFWDMDNMNM---LTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 588 ----~~~v~~i~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
...+..++|+|+|+++++++.+ +.|.+||+.+++. +.....+. .+.+++|+|+|+ ++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGS-LY 162 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSC-EE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeECCCCc-EE
Confidence 2237789999999999998865 8999999988443 34443332 578999999999 55
Q ss_pred EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccC
Q 001159 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+++ +.|.+||..++ +....+........
T Consensus 163 ~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~------------------------------------------------- 190 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTG-KYTVALPLRNWNRK------------------------------------------------- 190 (349)
T ss_dssp EES--SSEEEECTTTC-CEEEEECSTTCCCT-------------------------------------------------
T ss_pred Ecc--CcEEEEeCCCC-ceeccccccccCCc-------------------------------------------------
Confidence 554 34999999887 33322211100000
Q ss_pred CCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee-----------Eeccccee
Q 001159 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL-----------ALASNAVH 797 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~-----------~~~~dg~i 797 (1135)
.. .....+.+|...... .. .... ..+++++++.... ....++.+
T Consensus 191 -~~----------~~~~~~~~~~~~~~~---~~----------~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
T 1jmx_B 191 -GY----------SAPDVLYFWPHQSPR---HE----------FSML-YTIARFKDDKQDPATADLLYGYLSVDLKTGKT 245 (349)
T ss_dssp -TB----------CCCBCCCCCCCCCTT---CE----------EEEE-EEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred -cc----------cCccceeeecCCCcc---ee----------EEee-eeeeecCCCcCCccccccceeEEEEeccCCcE
Confidence 00 000112223221100 00 0011 4566665543221 11122333
Q ss_pred eeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEEEEEeCCeEEEEECCCccEEE
Q 001159 798 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKVMT 876 (1135)
Q Consensus 798 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~la~~~dg~i~vwd~~~~~~~~ 876 (1135)
++|++. . + ...+..++++| ||++++++ ++.|.+||+.+++.+.
T Consensus 246 ~~~~~~--------------------------------~--~-~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 246 HTQEFA--------------------------------D--L-TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEE--------------------------------E--C-SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEE
T ss_pred Eecccc--------------------------------c--C-CCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEE
Confidence 333221 1 2 56788999999 99999998 8999999999999888
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
.+.. ...+.+++|+| ++++|++++.++.|++||+.+++.+..+...
T Consensus 290 ~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 290 AANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEcC-CCCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 8763 34578999999 7888888888999999999999988887654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-18 Score=209.40 Aligned_cols=380 Identities=10% Similarity=0.019 Sum_probs=241.6
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc--e--eEEEecCCCCEEEEEeCC---------C
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS--L--GVVQFDTTRNRFLAAGDE---------F 610 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v--~~i~~s~~~~~l~~~~~d---------g 610 (1135)
..+++|+|||++++++ ++.|++||+.+++....+.++.... + ..++|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888874 5789999999999888887775421 2 347899999999998875 5
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCC
Q 001159 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+||+.+++... +..+ ...+..++|||||+.||.+. ++.|++|+..++....-+..++...+.
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~----------- 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY----------- 157 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE-----------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee-----------
Confidence 67799999987543 3332 33689999999999999885 579999999877311111111100000
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcc
Q 001159 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 770 (1135)
.+. .-.+|.-.
T Consensus 158 --------------------------------------------------~g~--~~~v~~ee----------------- 168 (740)
T 4a5s_A 158 --------------------------------------------------NGI--TDWVYEEE----------------- 168 (740)
T ss_dssp --------------------------------------------------ESB--CCHHHHHH-----------------
T ss_pred --------------------------------------------------cCc--ccccccch-----------------
Confidence 000 00000000
Q ss_pred cccceEEEEEEecCCcceeEeccc-ceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEe
Q 001159 771 AASKVVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
-.... ..+.|||||+.|+....| +.+.+|++..... +. .+ ...+..+.|
T Consensus 169 ~~~~~-~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~-~~~~~~~~y 218 (740)
T 4a5s_A 169 VFSAY-SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQ-YPKTVRVPY 218 (740)
T ss_dssp TSSSS-BCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CS-SCEEEEEEC
T ss_pred hcCCC-cceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CC-CCcceeecC
Confidence 00111 568999999999988765 4488887642110 00 02 456677888
Q ss_pred ecCCCEEEEEeCCeEEEEECCC---cc--EEEEEe------CCCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEccc
Q 001159 850 SKNDSYVMSASGGKVSLFNMMT---FK--VMTMFM------SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRV 914 (1135)
Q Consensus 850 s~dg~~la~~~dg~i~vwd~~~---~~--~~~~~~------~h~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd~~~ 914 (1135)
.+.|..-. ..+|++||+.+ ++ ....+. +|...+..++||| ||++++.... +..|++||+.+
T Consensus 219 p~~G~~~~---~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 219 PKAGAVNP---TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CBTTSCCC---EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CCCcCcCC---eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCC
Confidence 87775311 24799999998 73 223343 3777799999999 7887666543 34799999998
Q ss_pred ce----ee--EEe--cCcCCCeE-----EEEEcCCCCeEE-EEcC-C--CcEEEEeCCCCceeceeeeecCCCCCCCCCC
Q 001159 915 DE----VK--TKL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 977 (1135)
Q Consensus 915 ~~----~~--~~l--~~h~~~i~-----~l~~s~d~~~l~-s~~~-D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1135)
++ +. ..+ .+|.+.|. .++|||||+.|+ ..+. + ..|.+||+.+++.. +...+. ..
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~----~~ 365 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT----WE 365 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS----SC
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC----EE
Confidence 87 22 222 45665554 789999999877 6653 3 35888888876532 222222 34
Q ss_pred ceEEEECCCCcEEEE-Eec-----CeEEEEec--CCceee-ccCCC-CCCCCCEEEEEEeeCCCEEEEEeCC---CeEEE
Q 001159 978 ETKVQFHNDQTHLLV-VHE-----SQISVYDS--KLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIGV 1044 (1135)
Q Consensus 978 v~~~~~s~dg~~l~~-~~d-----~~v~vwd~--~~~~~~-~~~~~-~~h~~~i~~~~~s~d~~~l~~~~~d---g~I~v 1044 (1135)
+..+. .+|++.|+. +.. +...||.+ .+.... .+... .........+.||||+++++..... ..+.+
T Consensus 366 v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l 444 (740)
T 4a5s_A 366 VIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (740)
T ss_dssp EEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEE
Confidence 44443 245776666 432 23445544 443322 23221 1124568899999999987755433 46889
Q ss_pred EECCCceeeeeeC
Q 001159 1045 FDAETLRFRCRIG 1057 (1135)
Q Consensus 1045 wd~~~~~~~~~~~ 1057 (1135)
++..+++.+..+.
T Consensus 445 ~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 445 HSSVNDKGLRVLE 457 (740)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCCcEEEEec
Confidence 9998887665543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-18 Score=193.73 Aligned_cols=299 Identities=10% Similarity=0.013 Sum_probs=198.0
Q ss_pred ceeeEEeec-CCCCeeE-----EEEecCCCeEEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccCC
Q 001159 336 TKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~-----v~~sp~g~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
++.....+. +...+.. ++|||||+++++++..+| .|.+||+.+++.... ..++
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~ 79 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGR 79 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSS
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCC
Confidence 344444444 5555555 899999996655554467 488889888765431 3345
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEE--EecCCCeEEEEE-------------
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVT------------- 472 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~--~s~d~~~~~l~s------------- 472 (1135)
...+..++|||||+.|++++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTD 154 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCS
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccc
Confidence 5556678899999999999999999999999986543 3344555454444 489998 5553
Q ss_pred ---------EcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec-cCCccEEEEEEcC------CeEEEEeCcCCCceeE
Q 001159 473 ---------CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSRVD 536 (1135)
Q Consensus 473 ---------~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~ 536 (1135)
.+.+..|.+||+.+++.. .+..+...+..+.|+| ++ ..|+.++.+ ..|.++|....... .
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMR-K 230 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCE-E
T ss_pred cchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceE-E
Confidence 234578999999988654 4445677889999988 65 777776653 36777777654433 3
Q ss_pred ecCCC--CcEEEEEEcCCCCEEEEEecCCC-CCCeEEEEECCCCeEEE--EeecccC--CceeEEEecCCCCEEEEE---
Q 001159 537 YDAPG--NWCTMMAYSADGTRLFSCGTSKE-GESHLVEWNESEGAIKR--TYSGFRK--RSLGVVQFDTTRNRFLAA--- 606 (1135)
Q Consensus 537 ~~~~~--~~i~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~i~~s~~~~~l~~~--- 606 (1135)
+..+. ..+..++|+|||+.|+..+.... .+..|++||+.+++... .+.++.. .....+.|+|||+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 33333 35788999999998876553211 12359999999887433 3333110 001123689999988754
Q ss_pred ------eCCCeEEEEECCCCceEEEEeCCCCCC--------CcceEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 001159 607 ------GDEFQIKFWDMDNMNMLTTVDADGGLP--------ASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 607 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 662 (1135)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456789999999877644333222110 3678899999998887764 6777777654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=214.08 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=177.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeC-CCeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcC---CCcEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~---d~~i~i 481 (1135)
+..+|.+++|+|||++||+++. ||++.||++.++... .+..|. ..+.+++|+|| + ++++++. +...++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3557999999999999999887 999999999765432 344555 58999999999 5 6776664 555666
Q ss_pred EEcCC---CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 482 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
|.+.. +... .+.... .+...+|+|++++..+++++.++.. +||+.+++.......+. .+++|+|||++|++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 65543 3332 443222 3446688888765566665555554 99998876554443333 78899999999998
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChh
Confidence 7754333477999999988765 5666655 789999999999999888888 8999999998877 554432 2566
Q ss_pred eEE--------EcCCCCEEEEEECCCcEEEEEc
Q 001159 637 RLR--------FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 637 ~~~--------~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.++ |+|||.++++++.++++++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677 9999999999999999999998
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=194.23 Aligned_cols=241 Identities=12% Similarity=0.081 Sum_probs=179.8
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEE-EEEeCCCcEEEEEcccceeeEEec
Q 001159 846 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
.++++++++++++++ +++|++||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888888 8999999999999988887543 2578999999 77655 555678999999999998887776
Q ss_pred CcC------CCeEEEEEcCCCCeEEEEcCC------------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEEC
Q 001159 923 GHQ------NRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 923 ~h~------~~i~~l~~s~d~~~l~s~~~D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++...... ....+ ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee--eccCC----CcccceeEC
Confidence 332 337899999999999998865 899999999865332211 11111 247789999
Q ss_pred CCCcEEEEEecCeEEEEec-CCceeeccCCCC-C----------------------------------------------
Q 001159 985 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD-A---------------------------------------------- 1016 (1135)
Q Consensus 985 ~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~-~---------------------------------------------- 1016 (1135)
|||+ ++++ ++.|.+||. +++....+.... .
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5554 445999999 666554433221 0
Q ss_pred ------------------CCCCEEEEEEee-CCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEE
Q 001159 1017 ------------------LPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1077 (1135)
Q Consensus 1017 ------------------h~~~i~~~~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1135)
+...+.+++|+| ||++++++ ++.|.+||+.+++.+..+... ..+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-----------HTYYCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------SCCCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------CCccceE
Confidence 012456778889 99999888 889999999999988776532 2244788
Q ss_pred ecCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001159 1078 PHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1078 ~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~ 1109 (1135)
|+| ++++|++++.++.|.+||+.+++.....
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6777888889999999999988754433
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-17 Score=184.89 Aligned_cols=302 Identities=11% Similarity=0.079 Sum_probs=187.6
Q ss_pred CCCCEEEEEecCCCCCCeEEEEEC--CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC----CeEEEEECCC--Cce
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNM 622 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~ 622 (1135)
+...++++++.....++.|++|++ .+++.......+ ......++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 334456666654444667888865 566554333333 3367779999999999998875 7999998875 443
Q ss_pred --EEEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCc
Q 001159 623 --LTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 623 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 699 (1135)
+.....+. .....+++ ++++|++++ .++.|.+|++.....+ ..+..... ..|.
T Consensus 90 ~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~------------------~~g~- 145 (361)
T 3scy_A 90 HLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL-LPASDVIE------------------FKGS- 145 (361)
T ss_dssp EEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB-CSCSEEEE------------------CCCC-
T ss_pred EEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC-cccceeEE------------------ccCC-
Confidence 22333222 24566777 788777776 5789999998654111 11100000 0000
Q ss_pred cccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEE
Q 001159 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
+ + .+...+...+ .++
T Consensus 146 ---------------------------------------------~------------~-------~~~~~~~~~~-~~~ 160 (361)
T 3scy_A 146 ---------------------------------------------G------------P-------DKERQTMPHL-HCV 160 (361)
T ss_dssp ---------------------------------------------C------------S-------CTTTCSSCCE-EEE
T ss_pred ---------------------------------------------C------------C-------CccccCCCcc-eEE
Confidence 0 0 0000012234 789
Q ss_pred EEecCCcceeEecc-cceeeeEEeccccCCCCCc-ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEE
Q 001159 780 IYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 857 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la 857 (1135)
+|+|||+++++++. ++.+.+|++.........+ .... +........ + ...+..++|+|||++++
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEE
Confidence 99999997766554 7899999875321100000 0000 000001111 2 55678999999999888
Q ss_pred EEe--CCeEEEEECCCccE--EEEEe---CCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEEcc--cce--eeEEecCc
Q 001159 858 SAS--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVR--VDE--VKTKLKGH 924 (1135)
Q Consensus 858 ~~~--dg~i~vwd~~~~~~--~~~~~---~h~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~--~~~--~~~~l~~h 924 (1135)
+++ ++.|.+|++.+++. +..+. .+......++|+| ++++|+++..+ +.|.+|++. +++ .+..+..
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~- 304 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT- 304 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-
Confidence 776 78999999987754 33333 2334578999999 88888666654 899999996 444 4445554
Q ss_pred CCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCC--CCc
Q 001159 925 QNRITGLAFSPTLNALVSSG-ADAQLCMWSID--KWE 958 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~--~~~ 958 (1135)
...+.+++|+|||++|++++ .++.|.+|+++ +++
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 56788999999999888877 67899996554 554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-18 Score=209.89 Aligned_cols=274 Identities=11% Similarity=0.109 Sum_probs=184.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC-----cceEEEEEcCCCCe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-----ISVNRCVWGPDGLM 422 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~spd~~~ 422 (1135)
...++.|+|||+ +++++ ||.|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 466899999997 67776 89999999999875421 23333 23345899999999
Q ss_pred EEEEeCC---------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-
Q 001159 423 LGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT- 492 (1135)
Q Consensus 423 las~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~- 492 (1135)
|++++.+ +.+.+||+.+++.. .+..|...+..++|||||+ .||.+. |+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 56779999997543 3556788899999999999 567664 78999999988775432
Q ss_pred ecCCCCCe-----------------eEEEeeccCCccEEEEEEcCCe-EEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 493 FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 493 ~~~h~~~v-----------------~~i~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
..++...+ .++.|+|++ +.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCC--CEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333222 347898854 88888876655 8888764322110 1233556677777664
Q ss_pred EEEEEecCCCCCCeEEEEECCC---Ce--EEEEeec------ccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG------FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDN 619 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~ 619 (1135)
. .....|++||+.+ ++ ....+.. +.. .+..++|+|||+.++... .+..|++||+.+
T Consensus 224 ~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 3 1244699999998 73 2233332 333 688999999998766643 234799999998
Q ss_pred Cc----eE--EEE--eCCCCCCC---cceEEEcCCCCEEE-EEEC-C--CcEEEEEcCCC
Q 001159 620 MN----ML--TTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-D--NGIKILANSDG 664 (1135)
Q Consensus 620 ~~----~~--~~~--~~~~~~~~---v~~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~ 664 (1135)
++ +. ..+ ..+..... ....+|+|||+.++ ..+. + ..|.+|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 11 111 22222111 23789999999887 6654 3 35677776654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-16 Score=180.55 Aligned_cols=245 Identities=12% Similarity=0.126 Sum_probs=172.9
Q ss_pred CCcceEEEEEcCCCCeEEEEeCC----CeEEEEEeCCC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+...+..++|+|||++|++++.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEE
Confidence 56677889999999999999886 79999999864 334434344445667788888 7774 4455557899999
Q ss_pred EEcCCCeeeeee------cC--------CCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCcCCCc------e------
Q 001159 482 WDVVAGRKQYTF------EG--------HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS------R------ 534 (1135)
Q Consensus 482 wd~~~~~~~~~~------~~--------h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~------~------ 534 (1135)
|++.....+..+ .+ +...+.+++|+|++ +++++++ .++.|.+|+++.... .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 999754333221 11 12345789998865 6555554 589999999886542 1
Q ss_pred -eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--EEEeeccc--CCceeEEEecCCCCEEEEEeC-
Q 001159 535 -VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD- 608 (1135)
Q Consensus 535 -~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~i~~s~~~~~l~~~~~- 608 (1135)
.........+..++|+|||++++++.. .++.|.+||+.++.. +..+.... ......++|+|||++|+++..
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 222334556789999999999887762 377899999987765 33333221 124678999999999977665
Q ss_pred -CCeEEEEECC--CCc--eEEEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcC
Q 001159 609 -EFQIKFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 609 -dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 662 (1135)
++.|.+|++. +++ .+..+.. . ..+..++|+|+|++|++++ .++.|.+|++.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4899999996 444 3444443 2 2578999999999988887 57899997654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=187.48 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=169.0
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECC-CccEEEEEeCC-CCCeEEEEEecCCCc--EEEEEe-------------C
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMSP-PPAATFLAFHPQDNN--IIAIGM-------------E 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~h-~~~v~~l~~sp~~~~--~lasg~-------------~ 903 (1135)
...+..++|+|||++|++++.+.|.+|++. ++++....... .+...+++|+| +++ +++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346778999999999998884499999997 77765443211 12356789999 788 455553 6
Q ss_pred CCcEEEEEcc-cceeeEEec----CcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCC-CCceeceeeeecCCCCCCCCC
Q 001159 904 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 976 (1135)
Q Consensus 904 dg~v~iwd~~-~~~~~~~l~----~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|.+|+++ +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466544443 2556799999999999888765 46789999998 66532211121111 11 3
Q ss_pred CceEEEECCCCcEEEEEe--cCeEEEEec---CCcee------eccCCC-CCCCC------CEEEEE-EeeCCCEEEEEe
Q 001159 977 GETKVQFHNDQTHLLVVH--ESQISVYDS---KLECS------RSWSPK-DALPA------PISSAI-YSCDGLLVYAGF 1037 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~~--d~~v~vwd~---~~~~~------~~~~~~-~~h~~------~i~~~~-~s~d~~~l~~~~ 1037 (1135)
.+..++|+|||++++++. ++.|.+|++ +++.. ..+... .+|.. .+..++ |||||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998853 689999987 23331 112111 12222 488999 999999988776
Q ss_pred CCC------eEEEEECC-CceeeeeeCCceeccccccCCCCccEEEEecCC--CCCEEEEEecC-CcEEEEecCCC
Q 001159 1038 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1103 (1135)
Q Consensus 1038 ~dg------~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~d-g~v~~W~~~~~ 1103 (1135)
.+. .|.+|+++ +|++...... .+. ....+..++|+|. ||++|++++.+ ++|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~---~~~----~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFL---SPT----PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEE---EEC----SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeee---eec----CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 433 89999996 6664431110 000 0112235677775 57889888865 89999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=177.67 Aligned_cols=312 Identities=10% Similarity=0.087 Sum_probs=207.3
Q ss_pred CccEEEEEE------cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec------CCCCCCeEEEEECCCC
Q 001159 510 SIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEG 577 (1135)
Q Consensus 510 ~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~ 577 (1135)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 345555543 4789999999888877766655444 8999999999998752 1123567999999999
Q ss_pred eEEEEeeccc-----CCceeEEEecCCCCEEEEEeC--CCeEEEEECCCCceEEE-EeCCCCCCCcceEEEcCCC-CEEE
Q 001159 578 AIKRTYSGFR-----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLA 648 (1135)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~i~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~ 648 (1135)
+.+..+.... ......++++|||++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9988876431 124567999999999998863 68999999999988887 65321 2335677765 6778
Q ss_pred EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccC
Q 001159 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+.+.||.+.+|+........... +.
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~--~~----------------------------------------------------- 192 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQS--RS----------------------------------------------------- 192 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEE--EC-----------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeec--cc-----------------------------------------------------
Confidence 88999999999876521211000 00
Q ss_pred CCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCC
Q 001159 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~ 808 (1135)
..+|+... .. ..+.+++++..++..+.++.+.++|+......
T Consensus 193 ------------------~~~~~~~~------------------~~--~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 193 ------------------KQMFSVKD------------------DP--IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp ------------------CCCSCTTT------------------SC--BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred ------------------cceEcCCC------------------Cc--eEEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 00111100 00 11122344444555555666777665321100
Q ss_pred CCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe------------CCeEEEEECCCccEEE
Q 001159 809 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMT 876 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~ 876 (1135)
. +..|............ . ......++|+||++.+.++. .++|.+||+.+++.+.
T Consensus 235 ~---------~~~~~~~~~~~~~~~~----~-p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~ 300 (361)
T 2oiz_A 235 V---------DGPWSLLNDEDKAKNW----V-PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA 300 (361)
T ss_dssp E---------EEEEESCCHHHHHTTC----E-ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE
T ss_pred e---------cccccccCcccccccc----c-cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE
Confidence 0 0011111100000000 0 11112378999988777653 2479999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc--eeeEEecCcCCCeEEEEEcCCCC
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d~~ 938 (1135)
++..+. +.+++|+| |+++|+++.. +.|.+||..++ +.+..+..+......++++|||.
T Consensus 301 ~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 301 RIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 998877 99999999 8889988887 99999999999 99999877888899999999986
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=190.20 Aligned_cols=254 Identities=10% Similarity=0.011 Sum_probs=173.9
Q ss_pred ccCCCcceEE-----EEEcCCCCeEEEEeC-CC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC
Q 001159 404 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 404 ~~~h~~~V~~-----v~~spd~~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 475 (1135)
+..|...... .+|||||++|++++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4445555555 899999999999987 66 48888988875433 2345555555778999999 7888888
Q ss_pred CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE----------------------cCCeEEEEeCcCCCc
Q 001159 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 533 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s----------------------~dg~i~iwd~~~~~~ 533 (1135)
++.|++||+.+++....+..+...+....|..+.++..++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877776666666555554344557776432 347899999988754
Q ss_pred eeEecCCCCcEEEEEEcC-CCCEEEEEecCCC--CCCeEEEEECCCCeEEEEeecccC-CceeEEEecCCCCEEEEEeC-
Q 001159 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 608 (1135)
Q Consensus 534 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~- 608 (1135)
. .+..+...+..++|+| ||+.|+.+..... ....|+++|...+... .+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 4 3444556789999999 9999987764211 1447889998765543 3433332 25778899999998766442
Q ss_pred CC----eEEEEECCCCceEEEEeCCCC--C-CCcceEEEcCCCCEEEEE---------ECCCcEEEEEcCCC
Q 001159 609 EF----QIKFWDMDNMNMLTTVDADGG--L-PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 664 (1135)
Q Consensus 609 dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~~ 664 (1135)
++ .|++||+.+++.......... . .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 399999999875433222210 0 012335799999988864 44668999998876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=179.14 Aligned_cols=247 Identities=10% Similarity=0.084 Sum_probs=173.0
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeC-CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc------------
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 474 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~------------ 474 (1135)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467889999999999999888 99999997 654332 1121111 235568999999853355553
Q ss_pred -CCCcEEEEEcC-CCeeeeeec----CCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCc-CCCcee--Eec--CCCC
Q 001159 475 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 542 (1135)
Q Consensus 475 -~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~--~~~--~~~~ 542 (1135)
.++++.+|++. +++....+. .+...+.+++|+|++ +++++++ .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 466544443 245679999998865 7777665 46899999998 554432 233 2356
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC--CCeEE---EEeeccc----C-C-------ceeEEE-ecCCCCEEE
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIK---RTYSGFR----K-R-------SLGVVQ-FDTTRNRFL 604 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~i~-~s~~~~~l~ 604 (1135)
.+..++|+|||++++++.. .++.|.+|+.. +++.. ..+.... + . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 36789998764 56543 2222211 1 1 377899 999999988
Q ss_pred EEeCC-C-----eEEEEECC-CCceEEE---EeCCCCCCCcceEEEcC---CCCEEEEEEC-CCcEEEEEcCCC
Q 001159 605 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~~~---~~~~l~~~~~-dg~i~iwd~~~~ 664 (1135)
++..+ + .|.+|++. +++.... ...+. ..+..++|+| +|++|++++. ++.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76533 2 89999996 5665432 22222 2467899999 8999999886 489999998655
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=182.86 Aligned_cols=282 Identities=8% Similarity=-0.042 Sum_probs=185.3
Q ss_pred eeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 349 VMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
+.+++|||||++++++...+ ..|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 78899999999766655443 3788889888764321 11222223347899999999999
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEE-------------------EEEecCCCeEEEEEE-----cCCCcEEEE
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQLCIVTC-----GDDKMIKVW 482 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------v~~s~d~~~~~l~s~-----~~d~~i~iw 482 (1135)
+.++.|++||+.+++... ....+...... +.|+|+++ .++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999998876432 22223332222 35677777 33332 456789999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCceeEecCC-CCcEEEEEEcCCCCE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTR 555 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~ 555 (1135)
|+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..++|+|||++
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 99988765444 46778899999883 22556665543 36888888655433322221 336888999999998
Q ss_pred EEEEecCCC-CCCeEEEEECCCCeEEEEeecccCCceeEEEecC-CCCEEEEEe----------------CCCeEEEEEC
Q 001159 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG----------------DEFQIKFWDM 617 (1135)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~----------------~dg~i~iwd~ 617 (1135)
|+..+.... ..+.|++||+.+++........ ... +.|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887654211 1245999999988764433221 223 88999 999888754 3478999999
Q ss_pred CCCceEEEEeCCCCC---------CCcceEEEcCCCCEEEEEEC-CCcEEEEEc
Q 001159 618 DNMNMLTTVDADGGL---------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 661 (1135)
.+++... +..+... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 8877543 3322210 02466899999998887775 455555543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-15 Score=169.04 Aligned_cols=301 Identities=13% Similarity=0.186 Sum_probs=196.2
Q ss_pred CCCCEEEEEecC--CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----------CCCeEEEEECC
Q 001159 551 ADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMD 618 (1135)
Q Consensus 551 ~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~iwd~~ 618 (1135)
++++++++.... ...++.|++||..+++.+..+..... + .++|+|||++++++. .++.|.+||..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~-p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN-G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE-E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC-C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 356666655321 11367899999999999888877654 3 799999999999986 36789999999
Q ss_pred CCceEEEEeCCCC----CCCcceEEEcCCCCEEEEEEC--CCcEEEEEcCCCchhhhh-ccccccccccCCCCCCCCCCc
Q 001159 619 NMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRM-LEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 619 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+++.+..+..... ......++|+|||++|+++.. ++.|.+||+.++ +.... +....
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~~---------------- 152 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAAAG---------------- 152 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGGTT----------------
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecCCC----------------
Confidence 9999888864311 124678999999999998864 589999999877 32222 11000
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
T Consensus 153 -------------------------------------------------------------------------------- 152 (361)
T 2oiz_A 153 -------------------------------------------------------------------------------- 152 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEecCC-cceeEecccceeeeEEeccccCCCCCccccc-ccCeeecCCCCcceeccCCCCCCCCCceEEEEe
Q 001159 772 ASKVVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATAN-VAPQLWQPPSGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
. ..+.+.|++ ..+++.+.||.+.+|++... ++.... ....+|+... ....+.+
T Consensus 153 ---~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~-----g~~~~~~~~~~~~~~~~----------------~~~~~~~ 207 (361)
T 2oiz_A 153 ---C-WSVIPQPNRPRSFMTICGDGGLLTINLGED-----GKVASQSRSKQMFSVKD----------------DPIFIAP 207 (361)
T ss_dssp ---E-EEEEECTTSSSEEEEEETTSSEEEEEECTT-----SSEEEEEECCCCSCTTT----------------SCBCSCC
T ss_pred ---c-ceeEEcCCCCeeEEEECCCCcEEEEEECCC-----CcEeeeccccceEcCCC----------------CceEEEe
Confidence 0 122334433 33444555555555554321 110000 0001222211 1123344
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCccE--EEEEeCCC----------CCeEEEEEecCCCcEEEEEeC-----------CC
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMTFKV--MTMFMSPP----------PAATFLAFHPQDNNIIAIGME-----------DS 905 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~~~~--~~~~~~h~----------~~v~~l~~sp~~~~~lasg~~-----------dg 905 (1135)
++++..++..+ ++.|.++|+..... ...+.... .....++|+| +++.++++.. ++
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCS
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCc
Confidence 67887777776 78999999875432 22222111 1122378999 6666665543 35
Q ss_pred cEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC--ceeceeeeecCCCCCCCCCCceEEEE
Q 001159 906 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 906 ~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
.|.+||+.+++.+..+..+. +.+++|+|||++|++++. ++|.+||..++ +.+.. +. ..| .....++|
T Consensus 287 ~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~--i~-~~G-----~~P~~~~~ 355 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT--IE-GAA-----EASLQVQF 355 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE--ET-TSC-----SSEEEEEE
T ss_pred eEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE--ec-cCC-----CCcEEEEe
Confidence 89999999999999998877 999999999999998887 99999999998 64322 11 112 34578999
Q ss_pred CCCCc
Q 001159 984 HNDQT 988 (1135)
Q Consensus 984 s~dg~ 988 (1135)
+|||+
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=185.04 Aligned_cols=317 Identities=13% Similarity=0.044 Sum_probs=195.3
Q ss_pred EeCcCCCceeEecCCCCc-----EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 526 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
+|..++.....+..+... +..++|+|||++|+..... +++..|++||+.+++......+ .......+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCS-SCBCTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecC-CCCccccceECCCC
Confidence 355555555555544332 5678899999998877532 3456899999998876544333 22123347899999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccccc
Q 001159 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 680 (1135)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999998876655553321 5666766665555444443321
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEec-----ccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALA-----SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 835 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1135)
...++|+++.++... .+..|.+|++. ++...... .
T Consensus 146 -----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~~-~ 185 (396)
T 3c5m_A 146 -----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVIH-Q 185 (396)
T ss_dssp -----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEEE-E
T ss_pred -----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEeec-c
Confidence 011234444333321 23344444432 22211110 1
Q ss_pred CCCCCCCceEEEEeec-CCCEEEEEe-C------CeEEEEECCCccEEEEEeCC--CCCeEEEEEecCCCcEEEEEeCC-
Q 001159 836 ESKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED- 904 (1135)
Q Consensus 836 ~~~h~~~~i~~l~~s~-dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~lasg~~d- 904 (1135)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++.. .+..+ ...+..++|+| +++.|+.++.+
T Consensus 186 ---~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~ 259 (396)
T 3c5m_A 186 ---D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DGSAMAYVSYFK 259 (396)
T ss_dssp ---E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TSSCEEEEEEET
T ss_pred ---C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECC-CCCEEEEEecCC
Confidence 2 56688899999 888777765 2 36999998766543 33323 23588899999 78877776544
Q ss_pred ----CcEEEEEcccceeeEEecCcCCCeEEEEEcC-CCCeEEEEc----------------CCCcEEEEeCCCCceecee
Q 001159 905 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSR 963 (1135)
Q Consensus 905 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~----------------~D~~i~iwd~~~~~~~~~~ 963 (1135)
+.|++||+.+++....... . ... ++|+| ||+++++++ .+..|.+||+.+++..
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~--- 333 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ--- 333 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---
T ss_pred CCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---
Confidence 4599999998865433221 1 133 89999 999888765 3478999999887632
Q ss_pred eeecCCCCC-----CCCCCceEEEECCCCcEEEEEe--cCeEEEEec
Q 001159 964 FIQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDS 1003 (1135)
Q Consensus 964 ~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~ 1003 (1135)
.+....... .....+..++|+|||++|+.+. ++...||.+
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 122111100 0001245689999999988843 455555544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-14 Score=166.55 Aligned_cols=333 Identities=15% Similarity=0.141 Sum_probs=220.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC--CCchhhhhccccc
Q 001159 598 TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS--DGVRLLRMLEGRA 675 (1135)
Q Consensus 598 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 675 (1135)
+.+..+++...++.|.++|..+++.+.++.... .+..+.|+|||+++++++.++.|.+||+. ++ +....+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~-- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKI-- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEEC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEec--
Confidence 334556667789999999999999999887542 35689999999999999999999999985 43 11111100
Q ss_pred cccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCc
Q 001159 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1135)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~ 755 (1135)
T Consensus 239 -------------------------------------------------------------------------------- 238 (567)
T 1qks_A 239 -------------------------------------------------------------------------------- 238 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEeecCCcccccceEEEEEEe----cCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcce
Q 001159 756 SDPSQIKALRLPDSIAASKVVVRLIYT----NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 830 (1135)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~i~~~~~~s----~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1135)
.... ..++|+ |||++++++.. ++.+.++|..+.+. .....+.-.... +.
T Consensus 239 ----------------G~~P-~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i~~~~~~~~-~~-- 292 (567)
T 1qks_A 239 ----------------GSEA-RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMTYD-EQ-- 292 (567)
T ss_dssp ----------------CSEE-EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEECTT-TC--
T ss_pred ----------------CCCC-ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEEeccccccc-cc--
Confidence 0112 788999 69999888876 58898887433111 100000000000 00
Q ss_pred eccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEE-eCCCCCeEEEEEecCCCcEEEEEe-CCCc
Q 001159 831 TNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGM-EDSS 906 (1135)
Q Consensus 831 ~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~-~dg~ 906 (1135)
..|....+..+..++++..+++.- +|+|.++|..+.+.+... .........+.|+| ++++++++. .++.
T Consensus 293 ------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~ 365 (567)
T 1qks_A 293 ------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNK 365 (567)
T ss_dssp ------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTE
T ss_pred ------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCe
Confidence 002133678899999887666654 699999999876433221 12344577899999 788776655 5789
Q ss_pred EEEEEcccceeeEEecC-----cCCCeEEEEEcCCCC-eEEEEc-CCCcEEEEeCCC-------CceeceeeeecCCCCC
Q 001159 907 VQIYNVRVDEVKTKLKG-----HQNRITGLAFSPTLN-ALVSSG-ADAQLCMWSIDK-------WEKLKSRFIQAPAGRQ 972 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~-----h~~~i~~l~~s~d~~-~l~s~~-~D~~i~iwd~~~-------~~~~~~~~~~~~~~~~ 972 (1135)
|.++|+.+++.+..+.- |.+.-..+ ++|++. .+++.. .+++|.++|..+ ++.+.. +... +
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~--i~~~-g-- 439 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS--FPAL-G-- 439 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE--EECS-C--
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE--EecC-C--
Confidence 99999999988776543 43322222 578754 445543 568999999987 332221 1111 1
Q ss_pred CCCCCceEEEECCCCcEEEEEe--------cCeEEEEec-CC-----c-eeeccC-----CCCCCCCCEEEEEEeeCCCE
Q 001159 973 SPLVGETKVQFHNDQTHLLVVH--------ESQISVYDS-KL-----E-CSRSWS-----PKDALPAPISSAIYSCDGLL 1032 (1135)
Q Consensus 973 ~~~~~v~~~~~s~dg~~l~~~~--------d~~v~vwd~-~~-----~-~~~~~~-----~~~~h~~~i~~~~~s~d~~~ 1032 (1135)
..-..+.++|+++++.+.. .+.|.|+|+ +. . ....+. ....-...+..+.|++||++
T Consensus 440 ---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 516 (567)
T 1qks_A 440 ---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE 516 (567)
T ss_dssp ---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred ---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence 1224688999999999854 469999999 44 1 111111 11111457899999999999
Q ss_pred EEEEe-----CCCeEEEEECCCceeeeeeCC
Q 001159 1033 VYAGF-----CDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 1033 l~~~~-----~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
++++. .++.|.|+|..|++++.++..
T Consensus 517 ~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 517 VWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 88763 379999999999999988874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-14 Score=156.75 Aligned_cols=242 Identities=10% Similarity=0.110 Sum_probs=178.6
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeC------CCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEc
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~ 912 (1135)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.+++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 56788999999999888776 7999999987 666666642 34578999995326777666543 88999999
Q ss_pred ccceeeEEec-CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEE
Q 001159 913 RVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 991 (1135)
Q Consensus 913 ~~~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 991 (1135)
.+++.+..+. .+...+.+++++++|+++++...++.|.+||... +.... +.. .++. ..+..++++++|++++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~--~~~-~~~~---~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK--FGC-SKHL---EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE--EEC-TTTC---SSEEEEEECSSSEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEE--eCC-CCcc---CCcEEEEECCCCCEEE
Confidence 5677666664 3446789999999999888888889999999653 32211 111 1111 3578999999999777
Q ss_pred EE-ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC-eEEEEECCCceeeeeeCCceeccccccCC
Q 001159 992 VV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVSN 1069 (1135)
Q Consensus 992 ~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
+. .++.|++||.+++.+..+.. .++...+..++++++|+++++...++ .|.+|+. +++.+..+..+ ..
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~--------~~ 249 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------VK 249 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------SC
T ss_pred EECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------CC
Confidence 74 58899999997776665543 22346789999999999888887776 9999996 46666655432 11
Q ss_pred CCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1070 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1070 ~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
...+.+++++| +|+++++ +.|++|++|++...
T Consensus 250 ~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 250 HAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 23466888988 6777777 67999999998653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-15 Score=163.45 Aligned_cols=263 Identities=8% Similarity=0.108 Sum_probs=179.5
Q ss_pred CCeeEEEEecCCCeEEEEE--------eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 347 SNVMSMDFHPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
..+..+++ ||++++++. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 46778888 888665543 236789999998875421 2 4588999999
Q ss_pred CCCeEEEEeCC---C--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC------------------
Q 001159 419 DGLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------------------ 475 (1135)
Q Consensus 419 d~~~las~~~d---g--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~------------------ 475 (1135)
||++||.++.+ + .|.+|++.+++... +..+.. +.+++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47778887765332 223334 99999999999 4555542
Q ss_pred ---------CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC-------eEEEEeCcCCCceeEecC
Q 001159 476 ---------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 476 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~ 539 (1135)
...|++||+.+++.+..+.. . .+..++|+| +| ++++++.++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999998887455554 4 788899987 44 777776542 44556555 333333433
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCC----CCCeEEEEECCCCeEEEEeecccCCceeE-EEecCCCCEEEEEeCCCeEEE
Q 001159 540 PGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~~~~~dg~i~i 614 (1135)
+ ..+..+ +|||++|+.++.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 444444 999999987764221 245788998 5655443334333 6775 8999 88 8888999999999
Q ss_pred EECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE-EEEEcC
Q 001159 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 662 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~iwd~~ 662 (1135)
| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 23688999999 677777777665 777765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=160.79 Aligned_cols=251 Identities=12% Similarity=0.069 Sum_probs=183.7
Q ss_pred CCceEEEEeecCCCEEEEEe-C------------------------CeEEEEECCCccEEEEEe-CCCCCeEEEEEecCC
Q 001159 841 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 894 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-d------------------------g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~sp~~ 894 (1135)
-..+.+++++|+|+++++.. + ++|.+||..+++.+..+. ++-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 56789999999999998887 4 379999999999877765 3446789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccce-eeEEe---------cCcCCCeEEEEEcC-CCCeEEEEc-CCCcEEEEeCCCCceece
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~i~~l~~s~-d~~~l~s~~-~D~~i~iwd~~~~~~~~~ 962 (1135)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+. .++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 8888888889999999986542 45555 34555789999999 788888886 6999999994 4443222
Q ss_pred eeeecCCC--CCCCCCCceEEEECCC-CcEEEE-EecCeEEEEecC-CceeeccCCCCCCCCCEEEEEEee------CCC
Q 001159 963 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1031 (1135)
Q Consensus 963 ~~~~~~~~--~~~~~~~v~~~~~s~d-g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~~~~s~------d~~ 1031 (1135)
........ ..........++++|+ +.++++ ..++.|++|+.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11110000 0001134689999999 555555 368899999994 887776643 23467888999999 444
Q ss_pred EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1032 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.+++...+..|++|+..+++.+..+.... .+...+..++++| +|+++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 33334445689999999999998775211 1224577899999 678999999999999999864
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-10 Score=144.96 Aligned_cols=583 Identities=11% Similarity=0.077 Sum_probs=339.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|+++.-.++|. |. .|+.+| +..||-.. |+.+..... .. ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGYA--------FTVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSSC--------EEEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCCc--------eEEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33 466666 55566322 112211000 00 001245799999999987654
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccC----CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC-CCC-
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 499 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~- 499 (1135)
|+.+| +..||..+++. . .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ...
T Consensus 104 gT~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 89999876532 1 2221111 188898888886 444 333 45899998776543221111 112
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
|.++...+. ..+..++.++.+..||..+.+..... ......|.++...+++...+... .+-|.+||..+++
T Consensus 175 i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQG---DQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEET---TEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCC---CCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 777776543 24555776666888987765543221 12345788888888877665432 2238999988776
Q ss_pred EEEEeecc------cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCcceEEEcCCCCEE
Q 001159 579 IKRTYSGF------RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~~~------~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l 647 (1135)
........ ....|.++...++|...+ |+.+ -|.+|+..+++........ -....|.++...++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l- 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM- 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-
Confidence 54332211 123689999988887554 4455 4888998876544332111 11246889999988865
Q ss_pred EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 001159 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
-.|+.++.|..|+..+. . +..+.....
T Consensus 324 Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp EEEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred EEEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 45777778888876433 1 111100000
Q ss_pred CCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccC
Q 001159 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~ 807 (1135)
........| .++...++|. |-+++.++-+..|+...
T Consensus 351 ---------------------------------------~~~l~~~~V-~~i~~d~~g~-lWiGt~~~Gl~~~~~~~--- 386 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVV-SCIVEDKDKN-LWIGTNDGGLNLYNPIT--- 386 (795)
T ss_dssp ---------------------------------------SSSCSCSSE-EEEEECTTSC-EEEEESSSCEEEECTTT---
T ss_pred ---------------------------------------CCCCCCCee-EEEEECCCCC-EEEEECCCCeEEEcCCC---
Confidence 000012334 7888888887 55666665676665332
Q ss_pred CCCCcccccccCeeecCCCCcceeccCCC-----CCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEe--
Q 001159 808 NPSGKATANVAPQLWQPPSGTLMTNDINE-----SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM-- 879 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~-- 879 (1135)
+......... .-. ...|.+++..++|+.|-+|. ++.|.+||..+++......
T Consensus 387 -------------------~~~~~~~~~~~~~~~~l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 387 -------------------QRFTSYTLQEDESARGIG-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp -------------------CCEEEECCC------CCS-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT
T ss_pred -------------------CcEEEEecCCCCcccCCC-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC
Confidence 1111100000 001 46799999999999444555 6789999998876543321
Q ss_pred --CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec------CcCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 880 --SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 880 --~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
.+...|.++...+ ++.+.+ |+.+ -+.+||..+++...... .....|.++...++|.+.+... + -+..
T Consensus 447 ~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~ 521 (795)
T 4a2l_A 447 SQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSV 521 (795)
T ss_dssp SCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEE
T ss_pred CCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEE
Confidence 1345799999988 666554 4454 58899988776433221 1235799999999998777665 4 4888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCC-CCCEEEEEEeeCC
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDG 1030 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~d~ 1030 (1135)
|+..+++. . ..............|.++...++|.+.+.+.+ .+..||........+....+. ...|.++..+++|
T Consensus 522 ~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g 597 (795)
T 4a2l_A 522 FKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFG 597 (795)
T ss_dssp EEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTS
T ss_pred EeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCC
Confidence 98876542 1 11000000011146788999999998777655 788899854444443322222 3468899999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1031 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1031 ~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.+.+++ ++.|..|+..+++.. .+....-++ ......-++...+ +|+ |..|+.+| +..++...
T Consensus 598 ~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 598 RLWLST--NRGISCFNPETEKFR-NFTESDGLQ----SNQFNTASYCRTS-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp CEEEEE--TTEEEEEETTTTEEE-EECGGGTCS----CSCEEEEEEEECT-TSC-EEEEETTE-EEEECGGG
T ss_pred CEEEEc--CCceEEEcCCCCcEE-EcCCcCCCc----cccCccCceeECC-CCe-EEEecCCc-eEEEcHHH
Confidence 865544 456888999877643 333221111 1112122445555 564 55556666 55666543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-15 Score=180.57 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=175.1
Q ss_pred hhccCCCcceEEEEEcCCCCeEEEE--eCCCeEEEEEeCCCCceeeeeEeecccCCEE---------EEEEe--cCCCeE
Q 001159 402 ALLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQL 468 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spd~~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~v~~s--~d~~~~ 468 (1135)
..+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-- 91 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG-- 91 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--
Confidence 3466789999999999887777777 558899999975554433 4556666666 66676 9998
Q ss_pred E-EEEEc-CCCcEEEEEcC--CCeeeeeecC-----CCCCeeEEEeeccCCccEEEEEEcC----------CeEEEEeCc
Q 001159 469 C-IVTCG-DDKMIKVWDVV--AGRKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYD 529 (1135)
Q Consensus 469 ~-l~s~~-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d----------g~i~iwd~~ 529 (1135)
. |+..+ .+..|.+|++. .......+.. |...+.+++|+|++ +.|++++.+ ..|++||+.
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECC
Confidence 4 55444 35667777765 2034455655 66788899998865 888888877 589999998
Q ss_pred CC-----CceeEec-CCCCcEEEEEEcCCCCEEEEEecCCC----CCCeEEEEECC-CC---eEEEEeecccCCceeEEE
Q 001159 530 YL-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EG---AIKRTYSGFRKRSLGVVQ 595 (1135)
Q Consensus 530 ~~-----~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~i~ 595 (1135)
+. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+.
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAE 248 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceE
Confidence 72 3344555 55667888999999999998765321 13579999999 57 34333333333 788999
Q ss_pred ecCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCC------CCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 596 FDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
|+|||+.+++++.++ .|++||+.+++.......+... ..+..++|+++++++++++. +.++||.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777788 6777777677654433322111 01456788888888888877 88888743
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-13 Score=159.30 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=143.9
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc--CCCceeEecCCCCcEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 546 (1135)
++++...+++|.++|..+++.+.++... ..+..+.++|++ +++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 7888899999999999999999888643 356688898854 899999999999999995 6666655554 345679
Q ss_pred EEEc----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc----------cCCceeEEEecCCCCEEEE-EeCCCe
Q 001159 547 MAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFLA-AGDEFQ 611 (1135)
Q Consensus 547 ~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~i~~s~~~~~l~~-~~~dg~ 611 (1135)
++|+ |||++++++.. ..+.|.++|..+.+.+..+... ....+..+..++++..++. ...+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998764 3688999999999998877632 1225677888888765554 567799
Q ss_pred EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCC
Q 001159 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 664 (1135)
|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|..++
T Consensus 322 v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999987654333222111 2467889999999987766 4788999998776
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-10 Score=144.83 Aligned_cols=535 Identities=9% Similarity=0.039 Sum_probs=319.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.++...++|. +.+ |+.+ .+..||..+++...- ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~-lWi-gT~~-Gl~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VWI-GTRD-GLSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EEE-EESS-CEEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EEE-EeCC-chheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 443 4544 588999876543210 000 0000011888988888876654
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecc-cCC-EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee-cCCCCCeeE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 502 (1135)
. . +.+..||..+++... . ..++ ... |.++...+++. +. .++.++-|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IY-IGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EE-EEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EE-EEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 458899987643211 0 0011 123 88888888886 33 3555556899998777644321 123456888
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-------CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+..... ..+..++.++-+.+||..+.+...... .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 876543 345566665558889877654332211 1235799999999888666442 2 48999988
Q ss_pred CCeEEEEeec------ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCcceEEEcCCC
Q 001159 576 EGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEG 644 (1135)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 644 (1135)
++........ .....|.++..+++|. |..|+.++-|..|+..+.... .+... -....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7765443221 1223689999998876 555666677888887654432 22211 012358888888888
Q ss_pred CEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccc
Q 001159 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+. .|+.++.|..|+..++. . ..+......
T Consensus 369 ~lW-iGt~~~Gl~~~~~~~~~-~-~~~~~~~~~----------------------------------------------- 398 (795)
T 4a2l_A 369 NLW-IGTNDGGLNLYNPITQR-F-TSYTLQEDE----------------------------------------------- 398 (795)
T ss_dssp CEE-EEESSSCEEEECTTTCC-E-EEECCC--------------------------------------------------
T ss_pred CEE-EEECCCCeEEEcCCCCc-E-EEEecCCCC-----------------------------------------------
Confidence 654 57777788888876541 1 000000000
Q ss_pred cccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecc
Q 001159 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQR 804 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~ 804 (1135)
.. . ......| .++...++|..|.+++.++-+.+|+...
T Consensus 399 ---------------------------------~~----~----~l~~~~v-~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 399 ---------------------------------SA----R----GIGSNNI-KAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp --------------------------------------------CCSCSCE-EEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred ---------------------------------cc----c----CCCCccE-EEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 00 0 0012334 7888888887455666655577775432
Q ss_pred ccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeC----
Q 001159 805 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS---- 880 (1135)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---- 880 (1135)
... ..+..... . -+ ...|.++...++|++.+... +.|.+||..+++.......
T Consensus 437 ~~~------------~~~~~~~~--------~-l~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 437 GQV------------ENFNQRNS--------Q-LV-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp CCE------------EEECTTTS--------C-CS-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred CcE------------EEeecCCC--------C-cC-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccc
Confidence 111 00000000 0 02 56799999999998776655 5689999887655332211
Q ss_pred --CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-------CcCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 881 --PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 881 --h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
+...|.++...+ ++.+.+ |+. +-|..||..+++. .+. .....|.++...++|.+.++.. . -+..
T Consensus 494 ~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~ 566 (795)
T 4a2l_A 494 PVVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYC 566 (795)
T ss_dssp BCCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEE
T ss_pred ccCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-Ccee
Confidence 235789999988 666554 444 4588999887765 222 2345799999999998777654 3 4888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCC-CCE--EEEEEee
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSC 1028 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~i--~~~~~s~ 1028 (1135)
||..+++.. ......+.. ...|.++...++|.+.+++ ++.+..|+.....+..+...++.. ..+ .++...+
T Consensus 567 ~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~ 640 (795)
T 4a2l_A 567 FNEKDKQIK---RYNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTS 640 (795)
T ss_dssp EETTTTEEE---EECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECT
T ss_pred ECCCCCcEE---EeCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECC
Confidence 998775422 122222221 1457889999999887776 466888888555555544333222 233 5677788
Q ss_pred CCCEEEEEeCCCeEEEEECC
Q 001159 1029 DGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1029 d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|++++ |+.+| +..++.+
T Consensus 641 ~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 641 VGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp TSCEEE-EETTE-EEEECGG
T ss_pred CCeEEE-ecCCc-eEEEcHH
Confidence 888555 55666 4455544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-15 Score=180.44 Aligned_cols=285 Identities=9% Similarity=-0.012 Sum_probs=188.1
Q ss_pred CCCCeeEEEEecCCCeEEEEE--eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceE---------E
Q 001159 345 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 413 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 413 (1135)
|...|..++|++++- +++++ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 566899999998864 55555 5578899999644332221 233444444 4
Q ss_pred EEEc--CCCCe-EEEEeC-CCeEEEEEeC--C-CCceeeeeEeec-----ccCCEEEEEEecCCCeEEEEEEcCC-----
Q 001159 414 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 476 (1135)
Q Consensus 414 v~~s--pd~~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~v~~s~d~~~~~l~s~~~d----- 476 (1135)
+.|+ |||+. |+.++. +..|.+|++. + +. .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5555 99999 877654 4566666665 2 33 22 3444 667889999999999 67777766
Q ss_pred -----CcEEEEEcCC------Ceeeeeec-CCCCCeeEEEeeccCCccEEEEEEcC--------CeEEEEeCc-CC---C
Q 001159 477 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 532 (1135)
Q Consensus 477 -----~~i~iwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~iwd~~-~~---~ 532 (1135)
..|++||+.+ ++ ...+. .+...+..++|+|++ ++|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999887 54 44555 666778888998854 888877755 479999998 45 2
Q ss_pred ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC-------ceeEEEecCCCCEEEE
Q 001159 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~i~~s~~~~~l~~ 605 (1135)
.......+...+..++|+|||++++++.. ++...|++||..+++.......+... .+..++|++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444678999999999995555532 33347888888777765444433221 1467889999999999
Q ss_pred EeCCCeEEEE--ECCCCceEEEEeCCCCCCCcceE-EEcCCCCEEEEEECCCc--EEEEEcCCC
Q 001159 606 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTSDNG--IKILANSDG 664 (1135)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~--i~iwd~~~~ 664 (1135)
++. +.+++| |+.+++ +..+..+. ..+..+ +++.+.-++++++.+.. |.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 555555 56665543 245555 44443334444555544 444565555
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=157.89 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=182.2
Q ss_pred CCeeEEEEecCCCeEEEEEecc------------------------ceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 347 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+.|.+++++|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4799999999997 67777666 4799999887765431
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-ceeeeeEe---------ecccCCEEEEEEec-CCCeEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 471 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~v~~s~-d~~~~~l~ 471 (1135)
...++-.....++++|+|+++++...++.|++||..... .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012345578999999999988888889999999986542 222 23 23445789999999 676 677
Q ss_pred EEc-CCCcEEEEEcCCCeeeeeecC----------CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--
Q 001159 472 TCG-DDKMIKVWDVVAGRKQYTFEG----------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1135)
Q Consensus 472 s~~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-- 538 (1135)
+.+ .++.|++|| .+++.+..+.. +-.....++++|+. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 67777777642 22348899998762 3778888889999999998777766663
Q ss_pred CCCCcEEEEEEcCCCCEEEEEec---CCCCCCeEEEEECCCCeEEEEee---cccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
.+...+.+++++| +..+.+.+. ....+..|++||..+++.+..+. ++.. ....++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 433333321 11235589999999999998874 3333 68899999999777788889999
Q ss_pred EEEECCC
Q 001159 613 KFWDMDN 619 (1135)
Q Consensus 613 ~iwd~~~ 619 (1135)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=148.78 Aligned_cols=245 Identities=11% Similarity=0.079 Sum_probs=179.0
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEe---ecccCCEEEEEEe-cCCCeEEEEEEc-CCCcEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCG-DDKMIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~v~~v~~s-~d~~~~~l~s~~-~d~~i~ 480 (1135)
++-..+.+++++|+|+++++...++.|.+||.. ++.+...... .+|...+.++++. +++. ++++.. .++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 456679999999999988888889999999987 4433311110 1344578999995 5665 555553 388999
Q ss_pred EEEcCCCeeeeeecC-CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCCCEEE
Q 001159 481 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~ 557 (1135)
+|| .+++.+..+.. +...+.++++++++ .++++...++.|.+||.+ ++....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67777776643 44578899997754 777777788999999964 33343443 3345789999999998666
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCC-eEEEEECCCCceEEEEeCCCCCCCc
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+
T Consensus 180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 6543 678999997 466666665432 12678899999998888887775 9999996 46677777655443346
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987776 67999999997543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=169.69 Aligned_cols=249 Identities=9% Similarity=0.011 Sum_probs=177.2
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCC-----eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc-
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~- 478 (1135)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 34666799999999999999876543 899999999865432 222 22367899999999 6676666655
Q ss_pred ---------------EEEEEcCCCee----eeeecCCCCCeeEEEeeccCCccEEEEEEc-----CCeEEEEeCcC----
Q 001159 479 ---------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY---- 530 (1135)
Q Consensus 479 ---------------i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~iwd~~~---- 530 (1135)
|++|++.++.. +.....|...+..+.|+|++ ++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988763 22333355667888998755 77777664 56899999986
Q ss_pred --CC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--EEEeecccC-CceeEEEecCCCCEEE
Q 001159 531 --LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 531 --~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~i~~s~~~~~l~ 604 (1135)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. .+.+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 34455555554444 48899999887764333366899999987742 344444433 3677889987777777
Q ss_pred EEeCCCe--EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEEcCCC
Q 001159 605 AAGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~ 664 (1135)
+...++. |++|++.+++.+..+..+ ...+..+.++|++..++... ..+++..||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 7888874 666787778877777765 33678889999987666442 2478999999877
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-09 Score=134.18 Aligned_cols=595 Identities=12% Similarity=0.091 Sum_probs=336.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|+++.-.++|. |- .|+.+| +..||-.+ |+.+....... ....-....|.++.-.++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~~~----~~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LW-FATEEG-LNKFDGTR--------FITYYKEEQSS----SVQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC-EE-EEESSC-EEEECSSS--------EEEECCCSSCS----SSCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC-EE-EccCCc-CccccCCc--------eEEEEcCCCCC----ccccccccccceEEEcCCCCEEEE
Confidence 35799999999996 33 356565 56667332 11121100000 000012346999999988884666
Q ss_pred EeCCCeEEEEEeCCCCceeeeeE-eec---ccCCEEEEEEec--CCCeEEEEEEcCCCcEEEEEcCCCeeeeeec-----
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLE-IDA---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE----- 494 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~-l~~---h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 494 (1135)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++-|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77774599999887532210000 000 123588888877 664 4445545568899987766433211
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-------cCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
.....|.++..... ..|..++.++-+..||..+.+..... ......|.++...+++...+... .
T Consensus 160 l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 11345777776443 35666777766888987665432211 11235789999988888766541 3
Q ss_pred eEEEEECCCCeEEEEeec------ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe-------CC-----
Q 001159 568 HLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD----- 629 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 629 (1135)
-+.+||..+++....... .....|.++...++|. |..|+..+-|.+++..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 489999887765432211 1223688898888775 5556664568889987765332211 00
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCC
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 709 (1135)
-....|.++...++|. |-.|+.++.|..++..+.. +..+......
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~-------------------------------- 354 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSYSPTQ-------------------------------- 354 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC----C--------------------------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeeccCccc--------------------------------
Confidence 1123678888888886 4456767778888765441 1111000000
Q ss_pred CCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee
Q 001159 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~ 789 (1135)
..........| .++...++|. |.
T Consensus 355 -------------------------------------------------------~~~~~l~~~~v-~~i~~d~~g~-lW 377 (781)
T 3v9f_A 355 -------------------------------------------------------MNESSLSNKVV-SSVCDDGQGK-LW 377 (781)
T ss_dssp -------------------------------------------------------CCSSCCSSSCE-EEEEECTTSC-EE
T ss_pred -------------------------------------------------------cccCCCCCcce-EEEEEcCCCC-EE
Confidence 00000012334 7888888887 55
Q ss_pred EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEEC
Q 001159 790 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 869 (1135)
Q Consensus 790 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~ 869 (1135)
+++.++-+..|+...... ..+... .. .. ...|.+++..++|.+.+...++.|..+|.
T Consensus 378 igt~~~Gl~~~~~~~~~~------------~~~~~~--------~~--~~-~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVA------------IYNKEN--------RE--LL-SNSVLCSLKDSEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp EEEBSSCEEEEETTEEEE------------ECC---------------CC-CSBEEEEEECTTSCEEEEETTEEEEEECS
T ss_pred EEeCCCcEEEEECCCCeE------------EEccCC--------CC--CC-CcceEEEEECCCCCEEEEeccCCEEEEcC
Confidence 666555566665432111 000000 00 02 57799999998888777444677999998
Q ss_pred CCccEEEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc-----CCCeEEEEEcCCCCeEEE
Q 001159 870 MTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVS 942 (1135)
Q Consensus 870 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~i~~l~~s~d~~~l~s 942 (1135)
.+++...... .....|.++...+ ++.+. .|+. +-|..||..+++........ ...|.+++..++|.+.+.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 8765433221 1346799999887 66544 4555 45889998876543322212 467999999999987776
Q ss_pred EcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCC-CCCE
Q 001159 943 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPI 1021 (1135)
Q Consensus 943 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i 1021 (1135)
...+| +..||..+++.. ......+. ....|.++...++|.+.+.+.+|-|..||........+....+. ...|
T Consensus 512 t~~~G-l~~~~~~~~~~~---~~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i 585 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVR---KFNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHI 585 (781)
T ss_dssp ESSSC-EEEECTTCCEEE---EECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCC
T ss_pred EcCCC-EEEEeCCCCeEE---EccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceE
Confidence 54455 778888765421 11111111 12568899999999988877655448888844333333222211 3467
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1022 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1022 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.++..+++|.+.+ ++.+| |..|+..+++.. .+....-++ ......-++...+ +|. |..|+.+| +..++..
T Consensus 586 ~~i~~d~~g~lW~-~t~~G-l~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 586 RAISEDKNGNIWA-STNTG-ISCYITSKKCFY-TYDHSNNIP----QGSFISGCVTKDH-NGL-IYFGSING-LCFFNPD 655 (781)
T ss_dssp CEEEECSSSCEEE-ECSSC-EEEEETTTTEEE-EECGGGTCC----SSCEEEEEEEECT-TSC-EEEEETTE-EEEECSC
T ss_pred EEEEECCCCCEEE-EcCCc-eEEEECCCCceE-EecccCCcc----ccccccCceEECC-CCE-EEEECCCc-eEEEChh
Confidence 8899888888555 44555 788898876543 332211111 1111222444555 564 55566777 5666765
Q ss_pred C
Q 001159 1102 D 1102 (1135)
Q Consensus 1102 ~ 1102 (1135)
.
T Consensus 656 ~ 656 (781)
T 3v9f_A 656 I 656 (781)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-13 Score=151.31 Aligned_cols=273 Identities=11% Similarity=0.053 Sum_probs=187.6
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..|.++.|+|++. .++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 3678889999887 455556788888883 222211 34466678999999999988888
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCeeeeeec--CCCCCe
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 500 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~--~h~~~v 500 (1135)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998865432 2224667899999999998 67776666 689999988776543332 244578
Q ss_pred eEEEeeccCCccEEEEEEc------CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 501 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.+++++|++ .++++... .+.|..||....+.. .+......+..++|+|+++.|+.+.. .++.|.+||.
T Consensus 138 ~~i~~d~~g--~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCCC--CEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 899998754 66666543 355666665543332 22222335788999999997766542 2678999998
Q ss_pred CC-CeEEEEe------ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC----CCCcceEEEcCC
Q 001159 575 SE-GAIKRTY------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKE 643 (1135)
Q Consensus 575 ~~-~~~~~~~------~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~ 643 (1135)
.+ +..+..+ .......+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 3332211 1111125778999999998888778899999998 4666777654321 114789999999
Q ss_pred CCEEEEEECCC
Q 001159 644 GSLLAVTTSDN 654 (1135)
Q Consensus 644 ~~~l~~~~~dg 654 (1135)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-13 Score=149.64 Aligned_cols=270 Identities=13% Similarity=0.075 Sum_probs=181.9
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+++|++++..++....++.++.|.-. .... +.. + ...+.+++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g~l~ 59 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQGQLF 59 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTSCEE
T ss_pred ceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCCCEE
Confidence 677888888888777778888877211 0000 111 2 4567899999999977
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEcccceeeEEec--CcCCCeE
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQNRIT 929 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~~i~ 929 (1135)
+++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+...+.
T Consensus 60 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 60 LLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 7776 78999999998887665545677899999999 78888777666 689999998876543333 3456799
Q ss_pred EEEEcCCCCeEEEEcC------CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEE
Q 001159 930 GLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVY 1001 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vw 1001 (1135)
+++++|+|+++++... .+.|..++.++++... ..... ..+..++|+|||++|+++ .++.|.+|
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 9999999998887764 2456666655544221 11111 245789999999876664 46899999
Q ss_pred ec--CCceeecc-----CCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccE
Q 001159 1002 DS--KLECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPL 1074 (1135)
Q Consensus 1002 d~--~~~~~~~~-----~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1135)
|. .+..+..+ ....+ ...+..++++++|+++++...++.|.+||. +++.+..+.... ....+...+.
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~----~~~g~~~~~~ 283 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG----RDEGHMLRST 283 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT----GGGTCSCBCC
T ss_pred EecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC----CccccccCcc
Confidence 98 33332211 11111 136788999999998887778899999998 466666554221 0001112455
Q ss_pred EEEecCCCCCEEEEEecC
Q 001159 1075 VIAPHPSEPNQIALGMSD 1092 (1135)
Q Consensus 1075 ~~~~~~~~~~~l~sg~~d 1092 (1135)
+++|+| |+..|+.++.+
T Consensus 284 ~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 284 HPQFIP-GTNQLIICSND 300 (333)
T ss_dssp EEEECT-TSCEEEEEEEC
T ss_pred eEEECC-CCCEEEEEeCc
Confidence 788887 56566555554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-13 Score=151.93 Aligned_cols=220 Identities=10% Similarity=0.093 Sum_probs=151.7
Q ss_pred ceEEEEeecCCCEEEEEe-C---Ce--EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC------------
Q 001159 843 SAACIALSKNDSYVMSAS-G---GK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED------------ 904 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-d---g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d------------ 904 (1135)
.+..++|||||++||..+ + +. |.+||+.+++.......+. +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 356889999999999886 2 33 8888998887665554333 99999999 88888877642
Q ss_pred ---------------CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC-------cEEEEeCCCCceece
Q 001159 905 ---------------SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA-------QLCMWSIDKWEKLKS 962 (1135)
Q Consensus 905 ---------------g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-------~i~iwd~~~~~~~~~ 962 (1135)
..|++||+.+++.+..+.. . .+..++|+||| +++++..+. ...||.+++++. .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-E- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-E-
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-E-
Confidence 5799999998887455554 3 78999999999 887776542 445555554332 1
Q ss_pred eeeecCCCCCCCCCCceEEEECCCCcEEEE-Eec--------CeEEEEecCCceeeccCCCCCCCCCEEE-EEEeeCCCE
Q 001159 963 RFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHE--------SQISVYDSKLECSRSWSPKDALPAPISS-AIYSCDGLL 1032 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~-~~~s~d~~~ 1032 (1135)
.+... + .+. .++|||++|+. +.+ ..|.+|| +++..... ..|...+.. ++|+ |+ +
T Consensus 212 -~l~~~-~------~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~---~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMFEK-V------SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGIL---DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEEEE-E------SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESS---TTCCSEEEEEEEET-TE-E
T ss_pred -EeccC-c------cee--eECCCCCEEEEEEccccCCccccceEEEEC-CCceEecc---ccCCcccCCccEEc-Cc-E
Confidence 11111 1 123 33999998887 432 3688888 55443322 233567886 9999 98 8
Q ss_pred EEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcE-EEEecC
Q 001159 1033 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAV-HVVEPS 1101 (1135)
Q Consensus 1033 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v-~~W~~~ 1101 (1135)
+++++.++.+++| +.+++....+.. ...+.++.++| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~~-----------~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAKG-----------RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEECS-----------SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEecC-----------CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 886655332221 13345677877 588888887765 777775
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=167.31 Aligned_cols=247 Identities=8% Similarity=-0.021 Sum_probs=172.1
Q ss_pred CCeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
..+..++|||||++++++.+.+| .|++||+.+++.+.. ......+..++|||||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--------------------~~~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--------------------VLERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--------------------EEEEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--------------------cccCcccceEEEEeCCCE
Confidence 36889999999996555444344 899999999876531 001223678999999999
Q ss_pred EEEEeCCCe----------------EEEEEeCCCCcee-eeeEeecccCCEEEEEEecCCCeEEEEEEcC-----CCcEE
Q 001159 423 LGVAFSKHI----------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIK 480 (1135)
Q Consensus 423 las~~~dg~----------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d~~i~ 480 (1135)
|+.++.++. |++|++.++.... .......|...+..+.|+|||+. |+.++. +..|+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEE
Confidence 999988765 9999998865321 11122235566889999999995 444432 67899
Q ss_pred EEEcCC------Ce-eeeeecCCCCCeeEEEeeccCCccEEEEEEc----CCeEEEEeCcCCCc--eeEecCCCC--cEE
Q 001159 481 VWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLGS--RVDYDAPGN--WCT 545 (1135)
Q Consensus 481 iwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~~--~~~~~~~~~--~i~ 545 (1135)
+||+.+ +. ....+..+...+.. .|++++ ..|+..+. ++.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999987 53 45666667666655 366654 55555443 33699999987652 234444433 688
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCc
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 621 (1135)
.++|++++.++++... ++...|++||+.+|+.++.+..+.. .+..+.++|+++.++... ..++|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8999876666666653 3345688899878888788877744 788899999987766432 45789999998877
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-14 Score=170.51 Aligned_cols=248 Identities=11% Similarity=-0.031 Sum_probs=168.5
Q ss_pred cCCCcceEEEEEcCCCCeEEEE-----eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc-
Q 001159 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~-----~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~- 478 (1135)
.+|...+.+++|||||++||.+ +.+..|++||+.+++.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4577789999999999999954 34568999999998754110 11111 126799999999 6777777766
Q ss_pred ------------EEEEEcCCCe----eeeeecCCCCCeeEEEeeccCCccEEEEEEcCC----eEEEEeCcCCCceeEec
Q 001159 479 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 ------------i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~ 538 (1135)
|++|++.++. .+.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 9999998876 333444566678899998865 7777776665 66666654443 33444
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
.+...+....+ ++|. ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44445555556 6677 555443222478999999987753 333333324367888888 66777888889988888
Q ss_pred ECC-CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC----CCcEEEEEcCCC
Q 001159 616 DMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1135)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 664 (1135)
.+. +++....+..+. ...+..++++|+++.++.... .++|.+||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 665 355566665432 235778889999987774433 478999999877
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-13 Score=144.27 Aligned_cols=252 Identities=12% Similarity=0.046 Sum_probs=187.3
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-CCe
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 928 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i 928 (1135)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456778777 8999999999999999998776 5789999999 888888 45788999999 899999988653 478
Q ss_pred EEEEEcCCCCeEEEEcC-CCcEEEEeCCCCceeceeeeecC-CCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCC
Q 001159 929 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1005 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~ 1005 (1135)
.++.+.+||+++++.+. ++.|..+|. +++.+....+... .++. .....+++.++|+++++. .++.|.+||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777877876 4554433322211 1111 234567889999999985 689999999988
Q ss_pred ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCE
Q 001159 1006 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1006 ~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1135)
+.+..+... ..+.++.+.++|.++++++.++.|..+|..+|+.+-++..... +. .....+..+...+ +|++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~---~~l~~~~~~~~~~-~G~i 226 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EG---VQLFFVAQLFPLQ-NGGL 226 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BS---CCCSEEEEEEECT-TSCE
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CC---ccccccccceEcC-CCCE
Confidence 887776542 3455678889999999998888999999999999988763211 00 0123455677777 7788
Q ss_pred EEEEecC--------CcEEEEec-CCCccccCCCCCCCCCCCCC
Q 001159 1086 IALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLPS 1120 (1135)
Q Consensus 1086 l~sg~~d--------g~v~~W~~-~~~~~~~~~~~~~~~~~~~~ 1120 (1135)
+++.... +..+++++ .+++..|+.....+-|.+.+
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 8876421 23456666 57888888877777766654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-13 Score=146.31 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=172.0
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 919 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 919 (1135)
......+++. ++++.++.. ++.|.+||..+++.+.++. .......+++++ ++++.++...++.|.+||..+++...
T Consensus 43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred CccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEE
Confidence 3456677774 344444444 7999999999999999886 456789999998 67655554489999999999999877
Q ss_pred EecCcC-----CCeEEEEEcCCCCeEEEEc-CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 920 KLKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 920 ~l~~h~-----~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
.+.... .....|++ .+++++++.. .++.|.+||..+++....... + .....++++|+|++++++
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g-----~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G-----IQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S-----SCBCCCEECTTSEEEEEB
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C-----CCccceEEcCCCCEEEEE
Confidence 766433 14667888 4555555544 488999999999875443221 1 234688999999988775
Q ss_pred e-c----------CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee
Q 001159 994 H-E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1061 (1135)
Q Consensus 994 ~-d----------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~ 1061 (1135)
. + +.|.++|. +++....+.... ......++|+||+++|+++.. .|.+||..+++......
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~---- 261 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF---- 261 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----
Confidence 3 3 68999999 565554543321 236789999999999988765 89999999987642110
Q ss_pred ccccccCCCCccEEEEecCCCCCEEEEE----ecCCcEEEEecCCCcccc
Q 001159 1062 IPTYAVSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg----~~dg~v~~W~~~~~~~~~ 1107 (1135)
.+. ....+.+++++|.+++++++. ..++.|.+|+.. ++..+
T Consensus 262 ~~~----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 262 LEF----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp BCC----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred ecC----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 110 124577899999777888887 778999999997 76444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-13 Score=145.24 Aligned_cols=240 Identities=7% Similarity=-0.021 Sum_probs=171.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.....+++|+|+|+.+++++..++.|..|+..++ ... +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence 45578899999999878888999999999999876 221 234567799999999999888
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecc-cCCEEEEEEecCCCeEEEEEE----c-------------CCCcEEEEEcCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTC----G-------------DDKMIKVWDVVA 486 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~----~-------------~d~~i~iwd~~~ 486 (1135)
+...++.|.+||..+++.........+. ...+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 8777889999999777543211111111 23467899999998 67763 2 12355555544
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc-CCCc---eeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
++ +..+..+......++|+|++ +.+++.+.++.|.+||+. .+.. ...+..+...+.+++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 44455566778899998865 667777888999999987 3332 22333344466789999999866665
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEe-cCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.++ +..++..+.+
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 4569999986 788888877654 788899 58999999888764 5556666544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=144.79 Aligned_cols=276 Identities=12% Similarity=0.032 Sum_probs=189.8
Q ss_pred ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeee
Q 001159 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 367 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 446 (1135)
.++.|.+||..+++..... +. ... -.........+++. +++++++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~--------~~n-~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FY--------RAN-GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HH--------HHH-SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhh----Hh--------hhc-CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 4789999999998765320 00 000 01122446777774 45566666678999999999987665
Q ss_pred eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC-----CCeeEEEeeccCCccEEEEEE--c
Q 001159 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA--I 519 (1135)
Q Consensus 447 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s--~ 519 (1135)
.+. .......++++++++ ++++...++.|.+||+.+++....+.... .....+++ . + ..++.+. .
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~-~~lyv~~~~~ 150 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-G-KYVYVNCWSY 150 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-T-TEEEEEECTT
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-C-CEEEEEcCCC
Confidence 333 345689999999985 66666578999999999999887765433 14556666 2 2 3444444 4
Q ss_pred CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC------CCeEEEEECCCCeEEEEeecccCCceeE
Q 001159 520 DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1135)
Q Consensus 520 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1135)
++.|.+||..+.+....+... .....++++++|++++++..+.+. .+.|.++|..+++....+..........
T Consensus 151 ~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred CCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 899999999988776665543 345678999999876665421000 2689999999999887776543336788
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEE----ECCCcEEEEEcCCCchhh
Q 001159 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 594 i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~~~~~ 668 (1135)
++++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +.+
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~ 305 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLI 305 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEE
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEE
Confidence 999999999988765 89999999877532111111123578899999 55555665 568899999987 6 444
Q ss_pred hhc
Q 001159 669 RML 671 (1135)
Q Consensus 669 ~~~ 671 (1135)
..+
T Consensus 306 ~~i 308 (328)
T 3dsm_A 306 DEF 308 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-11 Score=133.73 Aligned_cols=281 Identities=9% Similarity=-0.029 Sum_probs=194.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... . +..+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------~------------~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------P------------LPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------E------------CSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------c------------CCcccCceeeEEECCCCCEEE
Confidence 346899999999998 66665557899999987 543210 0 112446799999999999888
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-eecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1135)
+...++.|..||.. ++ ... ..+......+.++++.+++. ++++...++.|.+||. +++... ....+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999976 32 221 12223455789999999998 7777777889999998 655433 233345678889
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.++ |.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++...
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~- 217 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITE- 217 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEE-
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEE-
Confidence 88764 467776667789999998 4443322 333445788999999998666543 2668999999 666443
Q ss_pred eecc-cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 583 YSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 ~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+... ....+..++++++|+.+++...++.|..||. +++ +..+........+.++++ +++.+.++.. .+.+..++.
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence 3221 2236889999999986666657789999998 444 344433333346889999 8887766554 567777777
Q ss_pred CCC
Q 001159 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
.++
T Consensus 294 ~~~ 296 (299)
T 2z2n_A 294 IKD 296 (299)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=142.96 Aligned_cols=237 Identities=13% Similarity=0.051 Sum_probs=170.3
Q ss_pred cCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 405 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+||
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQR 96 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEEC
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEEc
Confidence 34556688999999998 7788888999999999876 33 4556777899999999998 777777788999999
Q ss_pred cCCCeeeeeecCC----CCCeeEEEeeccCCccEEEEEEc-----------------CCeEEEEeCcCCCceeEecCCCC
Q 001159 484 VVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 484 ~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~ 542 (1135)
..+++........ ...+..++++|+ |.++++.+. .+.|..++.. .....+..+..
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~ 172 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRV 172 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCC
Confidence 8888754433211 234667888774 477776321 2345555544 44444555566
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeE---EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
....++|+|+++.+++.. .++.|++|++. ++.. ...+ ......+..++++++|+.+++. ++.|.+|+..
T Consensus 173 ~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 788999999999985443 36789999987 5655 3444 2223356779999999866666 7899999987
Q ss_pred CCceEEEEeCCCCCCCcceEEE-cCCCCEEEEEECCCcEEEEEcCCC
Q 001159 619 NMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 246 -g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 246 -GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 777777775533 789999 5899999988876 4444455444
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-09 Score=131.64 Aligned_cols=537 Identities=11% Similarity=0.075 Sum_probs=312.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~la 424 (1135)
..|.++...++|..|. .|+.++.+..||..+++...- .... ... ..-....|.++.... +|.+ .
T Consensus 66 n~I~~i~~d~~g~~lW-igt~~~Gl~~~d~~~~~f~~~------~~~~----~~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW-IATQRAGLNAYNYETQSFSVY------QYNP----EDP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSEEE-EEESSSCEEEEETTTTEEEEE------CCCT----TCS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCEEE-EEeCCCCcceECCCCCeEEee------cccc----CCC--CCcccCcceEEEecCccCCCE-E
Confidence 3589999999886233 466665799999887653210 0000 000 001124688988887 6654 4
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeec------ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC---
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--- 495 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--- 495 (1135)
.++.++-|..||..+++. . .+.. ....|.++...+++. |..|+.++-|..||..+++.......
T Consensus 132 i~t~~~gl~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~ 204 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKF-T---HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQN 204 (781)
T ss_dssp EEESSSCEEEEETTTTEE-E---EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC----
T ss_pred EEECCCCeeEEECCCCeE-E---eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCC
Confidence 565444588899876432 1 1211 124588888888775 44455565688999877654322110
Q ss_pred ----CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-------cCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 496 ----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 ----h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
....|.++.... +|. |..|+.+ -+.+||..+....... ......|.++...++|...+...
T Consensus 205 ~~~l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~---- 276 (781)
T 3v9f_A 205 PNSLPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE---- 276 (781)
T ss_dssp ----CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES----
T ss_pred cccCCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC----
Confidence 134688887644 333 5555555 6888987654432211 12245789999988887655431
Q ss_pred CCCeEEEEECCCCeEEEEee-------------cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe----
Q 001159 565 GESHLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---- 627 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~-------------~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 627 (1135)
.+-|.++|..++....... +-....|.++..+++|. |..|+.++-|..++...........
T Consensus 277 -~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 354 (781)
T 3v9f_A 277 -LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ 354 (781)
T ss_dssp -SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred -CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc
Confidence 2348899988765432211 11223688998888876 5566666678889887654332211
Q ss_pred ---CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccccc
Q 001159 628 ---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 628 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 704 (1135)
..-....|.++...++|.+. .|+.++.|..|+..++. . ..+.. .
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~-~-~~~~~-~----------------------------- 401 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV-A-IYNKE-N----------------------------- 401 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE-E-ECC---------------------------------
T ss_pred cccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe-E-EEccC-C-----------------------------
Confidence 11112358888888887654 56666678888865431 0 00000 0
Q ss_pred ccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC
Q 001159 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d 784 (1135)
.......| .++...++
T Consensus 402 ---------------------------------------------------------------~~~~~~~v-~~i~~d~~ 417 (781)
T 3v9f_A 402 ---------------------------------------------------------------RELLSNSV-LCSLKDSE 417 (781)
T ss_dssp -----------------------------------------------------------------CCCSBE-EEEEECTT
T ss_pred ---------------------------------------------------------------CCCCCcce-EEEEECCC
Confidence 00012334 77777777
Q ss_pred CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeE
Q 001159 785 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKV 864 (1135)
Q Consensus 785 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i 864 (1135)
|. |.+++.++-+..++.. ++......... .. ...|.+++..++|++.+... +.|
T Consensus 418 g~-lWigt~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl 471 (781)
T 3v9f_A 418 GN-LWFGTYLGNISYYNTR----------------------LKKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGV 471 (781)
T ss_dssp SC-EEEEETTEEEEEECSS----------------------SCEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEE
T ss_pred CC-EEEEeccCCEEEEcCC----------------------CCcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-Cce
Confidence 77 5555554556655432 22211111000 02 56789999988888666544 679
Q ss_pred EEEECCCccEEEEEeCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC----cCCCeEEEEEcC
Q 001159 865 SLFNMMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG----HQNRITGLAFSP 935 (1135)
Q Consensus 865 ~vwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~i~~l~~s~ 935 (1135)
..+|..+++........ ...|.+++..+ ++.+.+ |+.++-|..||..+++.. .+.. ....|.++...+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS 548 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECT
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC
Confidence 99998876654333222 35799999988 666554 555444888988766533 3321 235689999999
Q ss_pred CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCC
Q 001159 936 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKD 1015 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~ 1015 (1135)
+|.+.++.. +|.|..||..+++.. ......+-. ...+.++...++|.+.+++.+ .|..++.....+..+...+
T Consensus 549 ~g~lWi~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~~~~~~d 621 (781)
T 3v9f_A 549 KGQMWLATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWASTNT-GISCYITSKKCFYTYDHSN 621 (781)
T ss_dssp TSCEEEEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEECSS-CEEEEETTTTEEEEECGGG
T ss_pred CCCEEEEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEcCC-ceEEEECCCCceEEecccC
Confidence 998777665 665488888776521 122222221 135788999999988777644 4777888555555544333
Q ss_pred CCCC---CEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1016 ALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1016 ~h~~---~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+... ...++..+++|++++ |+.+| +..++.+.
T Consensus 622 Gl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 622 NIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp TCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred CccccccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 2221 235677788888555 66777 55666553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=139.58 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=166.9
Q ss_pred ceEEEEeecCCCEEEEE-e-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 843 SAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
...+++++++|++++++ . ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 77899999999977624 4 68999999866543322223345688999999 777666555 88999999876543 33
Q ss_pred ec-CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeE
Q 001159 921 LK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQI 998 (1135)
Q Consensus 921 l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v 998 (1135)
+. .....+.+++++++|+++++...++.|.+|+..+..... ...... ..+..++++++|+++++. .++.|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 32 233578999999999988888888899999765543211 111111 346789999999977764 56899
Q ss_pred EEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEe
Q 001159 999 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAP 1078 (1135)
Q Consensus 999 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
.+||..+......... +...+.+++++++|.++++...++.|.+|+..+..... +.. .....+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~---------~~~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF---------TGLNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC---------CSCSCEEEEEE
T ss_pred EEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc---------CCCCCceeEEE
Confidence 9999954443332221 13678999999999877777778999999997654332 110 11135678889
Q ss_pred cCCCCCEEEEEecCCcEEEEecCCCcc
Q 001159 1079 HPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1079 ~~~~~~~l~sg~~dg~v~~W~~~~~~~ 1105 (1135)
++ +|+++++...+++|+++++...+.
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 88 678999999999999999987653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=138.14 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=179.0
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC-cceEEEEEcCCCCeEEEEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las~~~dg~i~iwd~~~ 439 (1135)
+|++++.++.|.+||.++|+.+-+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 788999999999999989987643 22233 4688999999999988 45778999999 6
Q ss_pred CCceeeeeEeecc-cCCEEEEEEecCCCeEEEEEEcC-CCcEEEEEcCCCeeeeeecC------CCCCeeEEEeeccCCc
Q 001159 440 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 511 (1135)
Q Consensus 440 ~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~ 511 (1135)
++.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+| .+|+.+.++.. +......+++.+ +|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd-~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~--~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVN-MKGEVLSKTEFETGIERPHAQFRQINKNK--KG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEEC-TTSCEEEEEEECCSCSSGGGSCSCCEECT--TS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEe-CCCCEEEEEeccCCCCcccccccCceECC--CC
Confidence 76555 34433 34688999999999 7777766 77888888 47887776642 112333444444 56
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC---
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 588 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 588 (1135)
+++++...++.|.+||.+ ++.+..+... ..+.++...++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 7777777654 34556778899999988753 56899999999999999975421
Q ss_pred --CceeEEEecCCCCEEEEEeCC--------CeEEEEEC-CCCceEEEEeCCCCCCCcceEE
Q 001159 589 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 589 --~~v~~i~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
..+..+...++|+.+++.... +..+++.+ .+++.+.++........+.+++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136788889999988887421 23355655 4688888887766666666654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-11 Score=130.03 Aligned_cols=278 Identities=9% Similarity=0.084 Sum_probs=188.2
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .++++.++|+..++...++.|..|+.. +......... + ...+.+++++++
T Consensus 15 ~~~-~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~~ 67 (299)
T 2z2n_A 15 TGP-YGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISSD 67 (299)
T ss_dssp CCE-EEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECTT
T ss_pred CCc-cceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECCC
Confidence 456 899999999976666657888887532 2211111111 2 567889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCccEEEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-EecCcCCCe
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 928 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i 928 (1135)
|++.++.. ++.|..||.. ++. ..+. .....+.++++++ +++++++...++.|..||. +++... .+..+...+
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 99888776 7889999986 333 3332 3456789999999 7888877777889999998 555432 233345678
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCCce
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1007 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1007 (1135)
.++++.++|+++++...++.|..||. +++... .... ... ..+..++++++|.++++. .++.|.+||.++..
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 215 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TPA---SGPVGITKGNDDALWFVEIIGNKIGRITTSGEI 215 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CCC---CcceeEEECCCCCEEEEccCCceEEEECCCCcE
Confidence 99999999998888877889999998 554321 1111 111 356799999999977765 47889999994443
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
. .+.. ..+...+.+++++++|+++++...++.|.+||. +++.. .+... .....+.++.+ + ++++.+
T Consensus 216 ~-~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~--------~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 216 T-EFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQ--------IKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp E-EEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECS--------SSSCCEEEEEE-C-SSCEEE
T ss_pred E-EEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCC--------CCCCccceEEe-c-CCCEEE
Confidence 2 2211 123567899999999997776667899999998 45432 22111 11134566777 5 677666
Q ss_pred EEecCCcEEEEecCCCc
Q 001159 1088 LGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~~~ 1104 (1135)
+.. .+.|..++..+.+
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 6778888876643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-13 Score=164.32 Aligned_cols=248 Identities=8% Similarity=-0.088 Sum_probs=162.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEec----cceEEEEEcCCcccc-ccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTN----VGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~----dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
|...+.+++|||||++++++.+. +..|++||+.+++.+ .. .+.+. ....++|+||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 34479999999999965554433 358999999998764 11 01111 1267999999
Q ss_pred CCeEEEEeCCCe-------------EEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC----cEEE
Q 001159 420 GLMLGVAFSKHI-------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKV 481 (1135)
Q Consensus 420 ~~~las~~~dg~-------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~----~i~i 481 (1135)
|+.|+.++.|.. |++|++.++... ........|...+.++.|+|||+. |+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999887532 122223345668999999999994 55444444 6777
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE---cCCeEEEEeCcCCCc---eeEecCC-CCcEEEEEEcCCCC
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGT 554 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~~~~ 554 (1135)
||..++. ...+..+...+....+ ++ |.+++... .++.|.+||+.+.+. ...+..+ ...+..++++ ++.
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~--g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WK--DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ET--TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cC--CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 7655554 4455556666666665 33 35444443 358899999987653 2333333 4467888887 555
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCce
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1135)
.+++... ++...|.++++ +++..+.+..+....+..++++++++.++... ..++|++||+.+++.
T Consensus 332 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLK--DATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEE--TTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5666543 22334445554 35566666665344677888999998777432 457899999998774
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-11 Score=134.57 Aligned_cols=274 Identities=9% Similarity=-0.007 Sum_probs=182.0
Q ss_pred EEecCCCeEEEEEe-ccc---eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe-
Q 001159 353 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 427 (1135)
Q Consensus 353 ~~sp~g~~lla~g~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~- 427 (1135)
...|++++++++-. ..+ .|.+||..+++.+.+ +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577765444332 233 889999998876542 1112223 899999999999886
Q ss_pred ---------CCCeEEEEEeCCCCceeeeeEee--cc---cCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeee
Q 001159 428 ---------SKHIVHLYTYNPTGELRQHLEID--AH---VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 428 ---------~dg~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~ 491 (1135)
.++.|.+||..+.+.+.... +. .+ ......++|+|||+ +|+.+. .++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876554321 11 00 12345899999999 455544 357899999 9999887
Q ss_pred e-ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-----CCCCc-EEEEEEcCCCCEEEEEecCCC
Q 001159 492 T-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 492 ~-~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+ +.. .+ ++.+.|.+. ..+++.+.||.+.++|. +++...... ..... .....+.+++..++..+.
T Consensus 162 ~~i~~-~~---~~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSS-PT---CYHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCC-Cc---eEEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 642 22 234445543 46677888999999999 665542221 11112 233456676665554432
Q ss_pred CCCeEEEEECCCCe--EEEEeeccc---------CCceeEEEecCCCCEEEEEeC----------CCeEEEEECCCCceE
Q 001159 565 GESHLVEWNESEGA--IKRTYSGFR---------KRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNML 623 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~--~~~~~~~~~---------~~~v~~i~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 623 (1135)
.+.+.+.|..++. .+..+.... ......+.+++++++++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 5679999987553 233332110 112344789999998888653 357999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~ 664 (1135)
.++.... ...+++|+|||+ +++++. .++.|.+||..++
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9997543 468999999999 777776 4899999999988
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=161.73 Aligned_cols=247 Identities=10% Similarity=0.036 Sum_probs=164.0
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCC-----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455578999999999999988654 4699999999875431 112222357899999 8 5555555443
Q ss_pred ------------EEEEEcCCCee----eeeecCCCCCeeEEEeeccCCccEEEEEEcCC-----eEEEEeCcCC--Ccee
Q 001159 479 ------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 535 (1135)
Q Consensus 479 ------------i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~--~~~~ 535 (1135)
|++|++.++.. +.....+...+..+.|+|++ ++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999987652 22223344458888897754 7787777544 8999999876 3134
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEE
Q 001159 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 614 (1135)
.+..+...+... ++|+|+.|+..+.....++.|.+||+.++ .....+..+....+..++++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 444444444444 34899999887654334678999999875 23333333333357777777 5566777888888777
Q ss_pred EECC-CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEEcCCC
Q 001159 615 WDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~ 664 (1135)
|.++ +++....+..+. ...+..+.++|+++.++... ..++|.+||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455666665432 23578889999988666332 2478999999877
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-12 Score=136.38 Aligned_cols=240 Identities=8% Similarity=-0.057 Sum_probs=167.3
Q ss_pred CeeEEEEecCCCeEEE-EEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 348 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
...+++++|+|+ +++ +.+.++.|.+|+..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999998 666 556788999999765442210 11233567889999999966665
Q ss_pred eCCCeEEEEEeCCCCceeeeeEee-cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEe
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1135)
. ++.|.+||..+.... .+. .....+.+++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765322 122 2335689999999998 7777777889999986555433322233346788888
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
++++ .++++...++.|.+||................+.+++++++|...++.. .++.|.+||............
T Consensus 158 ~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DNSG--NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CTTC--CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eCCC--CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 7744 6777777789999999876554433233336788999999996666553 367799999876544332222
Q ss_pred ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+. ..+..++++++|+.+++...++.|+++++...+
T Consensus 232 ~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 GL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 22 268899999999988888889999999987654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-12 Score=140.64 Aligned_cols=281 Identities=10% Similarity=-0.001 Sum_probs=186.5
Q ss_pred EEecCCcceeEecc-----cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 780 IYTNSGLSLLALAS-----NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
...|+++.+++... ++.+.+.| ..+++++...-.+ ..+ . +++||||+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD----------------------~~t~~v~~~I~vG----~~P-~-va~spDG~ 90 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVID----------------------GEAGRVIGMIDGG----FLP-N-PVVADDGS 90 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEE----------------------TTTTEEEEEEEEC----SSC-E-EEECTTSS
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEE----------------------CCCCeEEEEEECC----CCC-c-EEECCCCC
Confidence 34678887777765 45666664 4444444333222 333 3 99999999
Q ss_pred EEEEEe-----------CCeEEEEECCCccEEEEEeCCC-------CCeEEEEEecCCCcEEEEEeC--CCcEEEEEccc
Q 001159 855 YVMSAS-----------GGKVSLFNMMTFKVMTMFMSPP-------PAATFLAFHPQDNNIIAIGME--DSSVQIYNVRV 914 (1135)
Q Consensus 855 ~la~~~-----------dg~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~ 914 (1135)
++.+++ ++.|.+||..+++.+.++.-.. .....++|+| ||++|+++.. ++.|.++|+.+
T Consensus 91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTT
T ss_pred EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCC
Confidence 887764 4679999999999998875322 2456799999 8888887763 68999999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC-CceeceeeeecCCCCCCCCCCc-eEEEE-CCCCcEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGE-TKVQF-HNDQTHLL 991 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~dg~~l~ 991 (1135)
++.+.++.... . ...+....+.+++.+.||.+.+.++.+ ++..... ..... ....++ ....| .++|++++
T Consensus 170 ~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~ 242 (386)
T 3sjl_D 170 KAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVW 242 (386)
T ss_dssp TEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEE
T ss_pred CcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEE
Confidence 99998885322 1 233444556777888899999999876 4432111 01100 000122 22466 47888888
Q ss_pred EEecCeEEEEecCCce---eeccCCC-------CCCCCCEEEEEEeeCCCEEEEEeC----------CCeEEEEECCCce
Q 001159 992 VVHESQISVYDSKLEC---SRSWSPK-------DALPAPISSAIYSCDGLLVYAGFC----------DGAIGVFDAETLR 1051 (1135)
Q Consensus 992 ~~~d~~v~vwd~~~~~---~~~~~~~-------~~h~~~i~~~~~s~d~~~l~~~~~----------dg~I~vwd~~~~~ 1051 (1135)
++.++.|.+.|..+.. +..+... .-.......++++++++.|+.... .+.|.+.|+.+++
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 8888999999994332 2222100 000123345788999998887643 2579999999999
Q ss_pred eeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEE-ecCCcEEEEecCCCccccC
Q 001159 1052 FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALG-MSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg-~~dg~v~~W~~~~~~~~~~ 1108 (1135)
.+.++... ..+..+.+++ |++ +|+++ ..++.|.++|..+++..-.
T Consensus 323 v~~~i~vg-----------~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 323 RLAKFEMG-----------HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEEE-----------EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEEECC-----------CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 99988744 2344788888 554 66664 4589999999999884433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-11 Score=135.58 Aligned_cols=239 Identities=13% Similarity=0.028 Sum_probs=163.3
Q ss_pred EEEeecCCCEEEEEe-----------CCeEEEEECCCccEEEEEeCC-------CCCeEEEEEecCCCcEEEEEeC--CC
Q 001159 846 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 905 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~lasg~~--dg 905 (1135)
.+++||||++++++. ++.|.+||..+++.+.++... ......++|+| ||++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998884 467999999999888877532 12345899999 8898888874 57
Q ss_pred cEEEEEcccceeeEE-ecCcCCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceeceeeeec-CCCCCCCCCCceEEE
Q 001159 906 SVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGRQSPLVGETKVQ 982 (1135)
Q Consensus 906 ~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~ 982 (1135)
.|.++| .+++.+.. +... + ++.+.|++ +.+++.+.||.+.++|. +++......... ..+.. .-.....
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99998877 6532 2 24455665 46677788999999999 776442111000 01100 1112345
Q ss_pred ECCCCcE-EEEEecCeEEEEecCCce---eeccCCCC-------CCCCCEEEEEEeeCCCEEEEEeC----------CCe
Q 001159 983 FHNDQTH-LLVVHESQISVYDSKLEC---SRSWSPKD-------ALPAPISSAIYSCDGLLVYAGFC----------DGA 1041 (1135)
Q Consensus 983 ~s~dg~~-l~~~~d~~v~vwd~~~~~---~~~~~~~~-------~h~~~i~~~~~s~d~~~l~~~~~----------dg~ 1041 (1135)
+.+++.. ++++..+.+.+.|..... +..+.... -.......+++++|++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6676654 444667889999983221 12221100 01223445889999998877653 357
Q ss_pred EEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEEecCCCccc
Q 001159 1042 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAELK 1106 (1135)
Q Consensus 1042 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W~~~~~~~~ 1106 (1135)
|.++|+.+++.+.++... ..+.++.|+| ||+ +++++. .+++|.+||+.+++..
T Consensus 300 V~VID~~t~~vv~~i~~g-----------~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG-----------HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCEEEEEEECC-----------CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999999999999888533 2456889999 677 777777 5899999999988744
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=134.50 Aligned_cols=312 Identities=7% Similarity=-0.066 Sum_probs=199.1
Q ss_pred ccCCccEEEEEEc-----CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecC------CCCCCeEEEEECC
Q 001159 507 HKESIQFIFSTAI-----DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNES 575 (1135)
Q Consensus 507 ~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~ 575 (1135)
|.+++..++.... ++.|.+.|..+.+.+..+.....+ . ++++|||++++++... ++.++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3445577777765 689999999998888777655555 4 9999999999876420 0125679999999
Q ss_pred CCeEEEEeeccc------CCceeEEEecCCCCEEEEEeC--CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE
Q 001159 576 EGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 576 ~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 647 (1135)
+++.+..+.... +.....+.|+|||++++++.. ++.|.++|+.+++.+.++...+ . ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeecCCCcee
Confidence 999998876432 113456899999999998863 6899999999999999996532 1 22333345677
Q ss_pred EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 001159 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++.+.||.+.+.++.+...... ... .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~---~~~-~-------------------------------------------------- 218 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEI---THT-E-------------------------------------------------- 218 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEE---EEC-C--------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEE---eec-c--------------------------------------------------
Confidence 7888899999998866212210 000 0
Q ss_pred CCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEE-ecCCcceeEecccceeeeEEecccc
Q 001159 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIY-TNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
+.+.. ...+.....| .++|++++ .+.+|.+.+.|+....
T Consensus 219 ---------------------~~~~~------------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 219 ---------------------VFHPE------------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp ---------------------CCSCT------------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred ---------------------eeccc------------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence 00000 0000011233 35665444 3446777777654322
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-----------CCeEEEEECCCccEE
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVM 875 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~ 875 (1135)
...... |++.+...+ ..+ -. ......++++++++.+.+.. .++|.+.|+.+++.+
T Consensus 259 ~~v~~~---------~~~~~~~~~---~~g-~~-p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 259 AKFLPA---------VEALTEAER---ADG-WR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp CEECCC---------EESSCHHHH---HTT-EE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred ceeecc---------eeccccccc---ccc-cc-CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 111000 010000000 000 00 22334578899999888764 146999999999999
Q ss_pred EEEeCCCCCeEEEEEecCCCc-EEEEE-eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC
Q 001159 876 TMFMSPPPAATFLAFHPQDNN-IIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 876 ~~~~~h~~~v~~l~~sp~~~~-~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 936 (1135)
+.+... ..+..|+|++ |++ +|+++ ..++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 325 ~~i~vg-~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 325 AKFEMG-HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEE-EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEECC-CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 998632 3688999999 665 66665 45899999999999999888643 33456777776
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-10 Score=125.40 Aligned_cols=278 Identities=10% Similarity=-0.006 Sum_probs=191.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
....+.++++.++|+ ++++...++.|.+||.. ++... + . +..+...+.++++.++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---~------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---E------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---E------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---E------------CCCCCCcceeEEECCCCCEEE
Confidence 346899999999998 66666678899999987 44321 0 0 122346789999999999888
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-eecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1135)
+...++.|..||.. ++. . ...+......+.++++.++|. ++++...++.|..||.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 443 2 112233446789999999998 67777778899999977 55442 233345678888
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.+++ .+.++...++.|..||. +++... ........+..++++++|+..++.. ..+.|.+||. ++.....
T Consensus 152 ~~d~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSDN--ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTTS--SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCCC--CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 887654 66666666789999988 333322 2223445788999999997666543 2567999998 5554433
Q ss_pred -eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 583 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 -~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+.... ..+.+++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPN-ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCC-CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222 26788999999986666666789999998 44433 333332334678999999998666554 4 6766664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=152.63 Aligned_cols=245 Identities=8% Similarity=-0.030 Sum_probs=158.7
Q ss_pred CCeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
..+..++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|||| +.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence 36889999999996555544333 699999999876431 011222357899999 99
Q ss_pred EEEEeCCCe--------------EEEEEeCCCCcee-eeeEeecccCCEEEEEEecCCCeEEEEEEcC-----CCcEEEE
Q 001159 423 LGVAFSKHI--------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVW 482 (1135)
Q Consensus 423 las~~~dg~--------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d~~i~iw 482 (1135)
|+.++.++. |++|++.++.... .......+...+..+.|+|||+. |+..+. ...|++|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEE
Confidence 999887654 8899987765321 11122223346899999999994 444443 3489999
Q ss_pred EcCCC--eeeeeecCCCCCeeEEEeeccCCccEEEEEEc----CCeEEEEeCcCCC-c-eeEecCCCCcEEEEEEcCCCC
Q 001159 483 DVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-S-RVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 483 d~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
|+.++ ++...+..+...+.... .|++ +.|+..+. ++.|.+||+.+.. . ...+..+...+..++++ ++.
T Consensus 300 d~~~~~~~~~~~l~~~~~~~~~~~-~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~ 375 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPDLKAQWDFV-DGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR 375 (741)
T ss_dssp EEETTEECCCEEEECSSSSCEEEE-EEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred ECCCCCCcccEEecCCCCceEEEE-eccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence 99887 31455655655555553 3543 66766665 4559999988742 3 33344444566677777 444
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE-e---CCCeEEEEECCCCc
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNMN 621 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~---~dg~i~iwd~~~~~ 621 (1135)
.+++... ++...|++++. ++...+.+..+....+..+.++|+++.++.. + ..++|++||+.+++
T Consensus 376 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 376 LFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5555543 23344555665 4566666665434478889999998766532 2 45789999999876
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-10 Score=120.96 Aligned_cols=276 Identities=9% Similarity=0.044 Sum_probs=185.9
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .++++.++|+..++...++.|.+|+.. +......... + ...+..++++++
T Consensus 20 ~~p-~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~~ 72 (300)
T 2qc5_A 20 SGP-YGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSSL 72 (300)
T ss_dssp CCE-EEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECTT
T ss_pred CCc-ceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECCC
Confidence 445 899999999977766667888887532 1111111111 2 467889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCccEEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-EecCcCCCeE
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRIT 929 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i~ 929 (1135)
|++.++.. ++.|..||.. ++.... +......+.++++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99877766 6889999988 554322 222446789999999 78887777668899999987 55442 2333456789
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCCcee
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECS 1008 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~ 1008 (1135)
++++.++|+++++...++.|..++. +++... .... ... ..+..++++++|.++++. ..+.|.+|+.++...
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~ 221 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITTTGEIS 221 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcCCCcEE
Confidence 9999999998888777888999998 444221 1111 111 357899999999877775 456899999855443
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..... .+...+.+++++++|++.++...++.|..|+. +++.. .+... .....+.++...+ +|++.++
T Consensus 222 ~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~--------~~~~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 222 EYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ--------TENAEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC--------STTCCCCCEEECT-TSCEEEE
T ss_pred EEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC--------ccCCccceeEeCC-CCCEEEE
Confidence 32221 22567899999999997776666799999998 45443 22111 0113345677777 5676665
Q ss_pred EecCCcEEEEecC
Q 001159 1089 GMSDGAVHVVEPS 1101 (1135)
Q Consensus 1089 g~~dg~v~~W~~~ 1101 (1135)
.. . .|..++..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 54 4 77777653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-11 Score=134.42 Aligned_cols=278 Identities=10% Similarity=0.095 Sum_probs=188.0
Q ss_pred cCCCeEEEEEecc----ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe----
Q 001159 356 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 427 (1135)
Q Consensus 356 p~g~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~---- 427 (1135)
|++++++++...+ +.|.+.|..+++.+.+ +.--..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666666665544 7999999999887654 1112234 799999999988886
Q ss_pred ------CCCeEEEEEeCCCCceeeeeEee--c---ccCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeeeeec
Q 001159 428 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 494 (1135)
.++.|.++|..+.+.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665332 21 0 0123456899999994 44443 36899999999999988876
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE----ecCCCCc-EEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
-.. . ....|.+. ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 23334433 5677788899988888844433321 1111111 123567899888777653 5689
Q ss_pred EEEECCCCeEE--EEeecc---------cCCceeEEEecCCCCEEEEEeC----------CCeEEEEECCCCceEEEEeC
Q 001159 570 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~i~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 628 (1135)
.+.|...+... ..+... .......++++++++++++... ++.|.+.|..+.+.+.++..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111110 0001223789999988877642 35799999999999999875
Q ss_pred CCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEEcCCCchhhhh
Q 001159 629 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 670 (1135)
.. ....++|+|||+ ++++.. .++.|.++|..++ +.++.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~t 408 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRS 408 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEE
Confidence 43 368999999999 888887 5899999999998 44444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-11 Score=132.14 Aligned_cols=258 Identities=14% Similarity=0.072 Sum_probs=169.7
Q ss_pred cCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-----------CCeEEEEECCCccEEEEEeCC-------CCC
Q 001159 823 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPA 884 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~h-------~~~ 884 (1135)
|..+++++...-.+ ..+ .+++||||++++++. ++.|.++|..+++.+.++.-. ...
T Consensus 105 D~~t~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 105 DGSTGRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY 178 (426)
T ss_dssp ETTTTEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred ECCCCEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence 44555544433323 333 899999999888774 467999999999999887532 234
Q ss_pred eEEEEEecCCCcEEEEEeC--CCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceec
Q 001159 885 ATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
...++|+| |+++|+++.. ++.|.+.|+.+++.+.++.--. . ....|++ ..+++.+.||.+.+.+..+++...
T Consensus 179 P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 179 QWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKV 253 (426)
T ss_dssp GGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred cceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEE
Confidence 56799999 8888888764 5789999999999888876421 1 2333443 555666777877777775544321
Q ss_pred eeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeec---cCCCC----C---CCCCEEEEEEeeCC
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRS---WSPKD----A---LPAPISSAIYSCDG 1030 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~---~~~~~----~---h~~~i~~~~~s~d~ 1030 (1135)
... ....-... .....+.|++++..++. +..+.|.+.|.....+.. +.... . .......++|++|+
T Consensus 254 ~~~-~~~~v~~~--p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 254 TNT-EVFHTEDE--LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp EEC-CCCSCTTS--CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred Eee-eeeccCCC--ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 100 00100000 01124578999887666 567889999983332211 11000 0 01112236899999
Q ss_pred CEEEEEeC----------CCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEE
Q 001159 1031 LLVYAGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVV 1098 (1135)
Q Consensus 1031 ~~l~~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W 1098 (1135)
++++++.. ++.|.|+|..+++.+.++... ..+..+.++| ||+ +++++. .++.|.++
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-----------~~P~gia~sp-Dg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-----------HEIDSINVSQ-DAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-----------CCcCeEEEcc-CCCEEEEEEcCCCCeEEEE
Confidence 98777643 357999999999999988643 2456789999 677 888877 59999999
Q ss_pred ecCCCccc
Q 001159 1099 EPSDAELK 1106 (1135)
Q Consensus 1099 ~~~~~~~~ 1106 (1135)
|+.+.+..
T Consensus 399 D~~t~kvv 406 (426)
T 3c75_H 399 DAATGEEL 406 (426)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEE
Confidence 99998843
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-10 Score=126.36 Aligned_cols=243 Identities=12% Similarity=0.050 Sum_probs=164.9
Q ss_pred CcceEEEEEcCCCCeEEE-------EeCCCeEEEEEeCCCCceeeee-EeecccCCEEEEEEecC-CCeEEEEEEcCCCc
Q 001159 408 AISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKM 478 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las-------~~~dg~i~iwd~~~~~~~~~~~-~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~ 478 (1135)
-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ +. ++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCC
Confidence 345789999999988887 5778899999988765422100 00125567999999999 65 445444 447
Q ss_pred EEEEEcCCCeeeee-ecC----CCCCeeEEEeeccCCccEEEEEEcC---------------CeEEEEeCcCCCceeEec
Q 001159 479 IKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 i~iwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~ 538 (1135)
|.+||.. ++.... ... ....+.++++.++ |.+.++...+ +.|..||.. ++ ...+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEec
Confidence 9999987 665433 221 1235788998775 4666666554 567777655 33 22222
Q ss_pred CCCCcEEEEEEc----CCCCEEEEEecCCCCCCeEEEEECC-CCeE-----EEEeecccCCceeEEEecCCCCEEEEEeC
Q 001159 539 APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGAI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 539 ~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 608 (1135)
........++++ ++++.++.+.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 233356788999 99987766542 36789999976 4542 22333332025778999999988888878
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCC
Q 001159 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 663 (1135)
++.|.+||..+++.+..+..+. ..+.+++|+++++.|.++ ..++.|..|+...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999998777777666543 368899999999955544 4568899998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-10 Score=126.09 Aligned_cols=244 Identities=10% Similarity=0.058 Sum_probs=162.8
Q ss_pred CCeeEEEEecCCCeEEEE-------EeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 347 SNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
....+++|+++|+ ++++ +..++.|.+||..+++.... .. + ...++...+.+++++++
T Consensus 18 ~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~-------~--~~~~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK-------P--EVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC-------C--EETTEECCEEEEEECSS
T ss_pred CCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee-------c--ccCCCCCCCceEEEecC
Confidence 4678999999997 6776 56788999999887764321 00 0 01134567899999999
Q ss_pred -CCeEEEEeCCCeEEEEEeCCCCceee-eeEeec-ccCCEEEEEEecCCCeEEEEEEcCC---------------CcEEE
Q 001159 420 -GLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIKV 481 (1135)
Q Consensus 420 -~~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d---------------~~i~i 481 (1135)
|+++++. ..+.|.+||.. ++.... .....+ ....+.++++.++|. ++++...+ +.|..
T Consensus 82 ~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEE
Confidence 7655554 44479999988 543221 100001 123588999999997 56665544 56777
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEee----ccCCccEEEEE-EcCCeEEEEeCcC-CCc-----eeEecCCC-CcEEEEEE
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPH----HKESIQFIFST-AIDGKIKAWLYDY-LGS-----RVDYDAPG-NWCTMMAY 549 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~----~~~~~~~l~s~-s~dg~i~iwd~~~-~~~-----~~~~~~~~-~~i~~~~~ 549 (1135)
||.. ++... +..+......++++ ++ ++.++.+ ..++.|.+||++. +.. ...+..+. ..+..+++
T Consensus 158 ~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~d--g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 158 FTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGR--PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp ECTT-SCEEE-EEEEESSEEEEEEEECTTSC--EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred ECCC-CCEEE-eccCCCCcceEEEecccCCC--CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 7755 55433 22334456788887 54 4555444 5689999999863 221 11223333 56788999
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE-eCCCeEEEEECCC
Q 001159 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDN 619 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1135)
+++|+..++... ++.|.+||..+++.+..+..+.. .+.+++|+++++.|+++ ..++.|..|++..
T Consensus 234 d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999988777643 66899999988887777766544 78899999999966554 4668899999864
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-10 Score=127.11 Aligned_cols=252 Identities=12% Similarity=0.021 Sum_probs=166.1
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~ 917 (1135)
-.....++++++|+++++.. ++.|++||..++........ ..... ++|+| +++.|+++..++ .|.+|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34678999999999766665 68999999998877665554 33334 99999 788888888766 799998876654
Q ss_pred eEEe----cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 918 KTKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 918 ~~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
...+ ..+...+.+++++|++..|..+..++.|+.||..++........ ...+... ..+...++|+|++..|.++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~~g~~~-~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-ELSGSLG-TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CCCSCCC-CSSCCEEEEETTTTEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cccCCCC-CCccccEEEeCCCCEEEEE
Confidence 4444 32556788999999544555577788999999987653211000 0111110 0111399999965544443
Q ss_pred --ecCeEEEEecCCceeeccCCCC---C---------CCCCEEEEEEeeCCCEEEEEe-CCCeEEEEECCCceeeeeeCC
Q 001159 994 --HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 994 --~d~~v~vwd~~~~~~~~~~~~~---~---------h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.++.|+.|+..+.... +.... + .-.....++++++|+++++-+ .+++|+.|++.+|..... ..
T Consensus 285 d~~~~~I~~~~~~g~~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~-~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV-AG 362 (409)
T ss_dssp ETTTTEEEEECTTCCEEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE-EE
T ss_pred eCCCCEEEEEecCCCEEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE-eC
Confidence 5788999998654222 11110 0 023478999999999888777 889999999888875432 21
Q ss_pred ceecc---cc--ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1059 SAYIP---TY--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1059 ~~~~~---~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
+.... .+ ....-..+..+++++ +++++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 10000 00 001124577899999 5788888888888988765
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-06 Score=100.14 Aligned_cols=531 Identities=10% Similarity=-0.026 Sum_probs=289.4
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
+|+.+ ....|+..++.+..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 55678999998654221 11122 2346889999997775 556666788999999765443333332334567
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.+++.+.. +++.++-...+.|.+.+++...........-.....+++.|....|+..-. ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 88887653 256666667789999998765444434344456789999997667766532 125678888876443332
Q ss_pred EeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
... .- .....++++++++.|+.+. ..+.|...+++.... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~-~~-~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP-NV-GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC-SC-SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC-CC-CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 232 22 2577899999877777664 567899999876544 333322 22346777765 44444544578888888
Q ss_pred cCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc-ccCCC--C-ccccc
Q 001159 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL-GTIDG--S-RLVDV 736 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~ 736 (1135)
..++.. ...+........ .+.. +.+... +....... .+++. . ..+.+
T Consensus 235 k~tg~~-~~~l~~~~~~p~------------~i~v------------~~~~~q----~~~n~C~~~ng~C~~~C~~~~~~ 285 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDYVM------------DILV------------FHSSRQ----SGWNECASSNGHCSHLCLAVPVG 285 (628)
T ss_dssp TTTCCS-CEEEECSCCSCC------------EEEE------------ECGGGS----CCCCTTTTTGGGCSSEEEEETTT
T ss_pred CCCCCc-eEEEecCCCCcc------------eeee------------eeeccc----ccceEeccCCCCcchhhhcCCCC
Confidence 777632 222221110000 0000 000000 00000000 00000 0 00000
Q ss_pred ccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccccc
Q 001159 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
.+...+..+.. + ..... +|.. + ...|+.+. ...|+-..+..
T Consensus 286 ~~~C~C~~g~~----l------------------~~d~~-~C~~--~-~~~Ll~s~-~~~i~~i~l~~------------ 326 (628)
T 4a0p_A 286 GFVCGCPAHYS----L------------------NADNR-TCSA--P-TTFLLFSQ-KSAINRMVIDE------------ 326 (628)
T ss_dssp EEEEECSTTCE----E------------------CTTSS-CEEC--C-SSEEEEEE-TTEEEEECCCT------------
T ss_pred CeeEEcCCCcE----e------------------cccCC-cCcc--c-cceeeeec-cceEEEEeccc------------
Confidence 00000000000 0 00000 1111 1 12222222 22333222110
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC------CCCCeEEE
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFL 888 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~------h~~~v~~l 888 (1135)
...........+ -..+.+++|.+.+..|..+. .+.|+.+++........+.. ....+..+
T Consensus 327 --------~~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~gl 394 (628)
T 4a0p_A 327 --------QQSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDL 394 (628)
T ss_dssp --------TCCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEE
T ss_pred --------ccCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceE
Confidence 000001111111 45688999999888888776 58899998875443333322 23468899
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcC-CCCeEEEEcCCC--cEEEEeCCCCceeceee
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRF 964 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~-d~~~l~s~~~D~--~i~iwd~~~~~~~~~~~ 964 (1135)
|+....+++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++++-.... .|...+++..... . .
T Consensus 395 AvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~-~-l 471 (628)
T 4a0p_A 395 SIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE-V-L 471 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE-E-E
T ss_pred EeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE-E-E
Confidence 9998444555566677899999986 4444343 34456789999999 555555543332 4666666543321 1 1
Q ss_pred eecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeE
Q 001159 965 IQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 965 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I 1042 (1135)
+.. . ......++++++++.|..+ ..+.|...++++.....+... ......++++.. +.++++-...+.|
T Consensus 472 ~~~-~-----l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i 542 (628)
T 4a0p_A 472 FFS-G-----LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMI 542 (628)
T ss_dssp ECS-S-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEE
T ss_pred Eec-c-----CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeE
Confidence 111 1 1345899999998888775 457899999855554444321 133456777755 5666666677889
Q ss_pred EEEECCCceeeeeeC
Q 001159 1043 GVFDAETLRFRCRIG 1057 (1135)
Q Consensus 1043 ~vwd~~~~~~~~~~~ 1057 (1135)
...|..+|+....+.
T Consensus 543 ~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 543 EKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEETTSSSCCEEEE
T ss_pred EEEECcCCCCcEEEe
Confidence 999988887554443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-10 Score=126.34 Aligned_cols=240 Identities=10% Similarity=-0.001 Sum_probs=163.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
.....++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999997 778777789999999987654321 111 22233 9999999999998
Q ss_pred eCCC--eEEEEEeCCCCceeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee----ecCCCCC
Q 001159 427 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 499 (1135)
Q Consensus 427 ~~dg--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 499 (1135)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 788998877654332211112 445678999999655 344466788999999887764322 2222222
Q ss_pred e--eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---------------CcEEEEEEcCCCCEEEEEecC
Q 001159 500 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------NWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 500 v--~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
- ..++|+|.. +.++++-..++.|+.|+.+.. ...+.+.. .....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998853 366777777899999987643 22222221 3478999999999555543
Q ss_pred CCCCCeEEEEECCCCeEEEEeeccc--------------CCceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
..++.|+.|++.++... .+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 03778999998777743 343330 114778999999877777778888888765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-10 Score=139.39 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=165.2
Q ss_pred CCCeeEEEEecCCCeEEEEEecc----ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcc--eEEEEEcCC
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VNRCVWGPD 419 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~spd 419 (1135)
...+..++|||||++++.+.+.. ..|+|||+.+|+.+.. +... ...++|+ |
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----------------------~~~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----------------------PLKDVKFSGISWL-G 184 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----------------------EEEEEESCCCEEE-T
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc----------------------ccCCceeccEEEe-C
Confidence 34688999999999655544333 4799999999875431 1112 3578999 9
Q ss_pred CCeEEEEeCCC-------------eEEEEEeCCCCcee-eeeEeec-ccCCEEEEEEecCCCeEEEEEEc--CCCcEEEE
Q 001159 420 GLMLGVAFSKH-------------IVHLYTYNPTGELR-QHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVW 482 (1135)
Q Consensus 420 ~~~las~~~dg-------------~i~iwd~~~~~~~~-~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iw 482 (1135)
|+.|+.++.+. .|++|++.++..-. .+..... |...+.++.|+|||+.+++.+.. .+..|++|
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVK 264 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE
Confidence 99999998774 39999998764321 1112223 45567899999999963332222 23589999
Q ss_pred EcCCCe-eeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEE
Q 001159 483 DVVAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 483 d~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
|+.++. ....+..+....... +++.++ .+++....+ +.|..+|+.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 998764 455666666666554 444432 445555443 6799999987654 234555555554 889999998
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC----CeEEEEECCCCceE
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 623 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1135)
+..... ++...|++||+..+ ..+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 877642 33457999998754 4455544333357777888888777665444 88999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-10 Score=120.74 Aligned_cols=228 Identities=8% Similarity=0.082 Sum_probs=154.2
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
-.-+..|+|++..++++...++.|..||..+++... ......+.+++++|+|+++++ .
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~-~ 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVAT-I 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEE-E
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEE-E
Confidence 456889999777788888888999999998765421 113457999999999995554 3
Q ss_pred CCCeEEEEEeCCCCceeeeeEeec--ccCCEEEEEEecCCCeEEEEEE-cC--------CCcEEEEEcCCCeeeeeecCC
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~~~~~h 496 (1135)
++.|.+||..+++.. ....... ....+.+++++|+|+ ++++. +. ...-.||.+.....+..+..+
T Consensus 72 -~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 147 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ 147 (297)
T ss_dssp -TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred -CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence 567999999876432 1111111 123588999999998 44443 22 133455555432222333334
Q ss_pred CCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCc--CCCce-----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 497 EAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.++|+|++ +.+ ++.+.++.|.+||++ ++... ..+......+..++++++|++.++... .+.
T Consensus 148 ~~~pngi~~spdg--~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~~ 221 (297)
T 3g4e_A 148 VDISNGLDWSLDH--KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GGR 221 (297)
T ss_dssp ESBEEEEEECTTS--CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TTE
T ss_pred cccccceEEcCCC--CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CCE
Confidence 4456789998865 544 566678999999974 33221 122223356789999999987666542 567
Q ss_pred EEEEECCCCeEEEEeecccCCceeEEEec-CCCCEEEEEeC
Q 001159 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~~~~~ 608 (1135)
|..||..+|+.+..+..+.. .+++++|. |+++.|+.++.
T Consensus 222 v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 99999999999988887654 78999998 88887776553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-10 Score=126.30 Aligned_cols=271 Identities=10% Similarity=0.013 Sum_probs=173.7
Q ss_pred CCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 347 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
..+..++++|+|+ ++++.. .++.+.||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2343667766544322 111111 01234667899999999998776
Q ss_pred EEeC-----CCeEEEEEeCCCCceeeeeEee----cccCCEEEEEEecCCCeEEEEEEc---CCCcEEEEEcCCCeeeee
Q 001159 425 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 s~~~-----dg~i~iwd~~~~~~~~~~~~l~----~h~~~v~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 492 (1135)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999987644422 221 12235689999987653 455655 688999999999988777
Q ss_pred ecCCCCCee-EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 493 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 ~~~h~~~v~-~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++|+||++.|+++... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765532211 122333 346677777888877663 135789999999999887541 335655
Q ss_pred EECC---CCe-----EEE--EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 572 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ ....+.+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1112222 3456899999998888888999999999566643333321 23357899999
Q ss_pred CCCCEEEEEECCC
Q 001159 642 KEGSLLAVTTSDN 654 (1135)
Q Consensus 642 ~~~~~l~~~~~dg 654 (1135)
+++.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9988777766543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-09 Score=114.62 Aligned_cols=230 Identities=11% Similarity=0.005 Sum_probs=156.5
Q ss_pred CCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+....-+..|+|++. ++++...++.|..||..++.. . .+ .....+.+++++++|+ ++++. ++.|.+||..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~---~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q---RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E---EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E---EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 334466889999655 556666788999999987653 1 22 2456799999999998 55543 5689999998
Q ss_pred CCeeeeeecC----CCCCeeEEEeeccCCccEEEEEEcC---------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCC
Q 001159 486 AGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 486 ~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 552 (1135)
+++....... ....++.++++|++ .+.++...+ ..-.+|.++.......+.........++|+||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 8875432221 12347788887754 655544321 33455555543333333333345688999999
Q ss_pred CCEEEEEecCCCCCCeEEEEEC--CCCeEE-----EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001159 553 GTRLFSCGTSKEGESHLVEWNE--SEGAIK-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~--~~~~~~-----~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
++.|+.+.. ..+.|.+|++ .+|... ..+..... ....++++++|+..++....+.|.+||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876643 3678999987 455432 22222222 577899999998888877888999999999999988
Q ss_pred EeCCCCCCCcceEEEc-CCCCEEEEEECC
Q 001159 626 VDADGGLPASPRLRFN-KEGSLLAVTTSD 653 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 653 (1135)
+..+.. .+++++|. |+++.|.+++..
T Consensus 236 i~~p~~--~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLPVD--KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECSSS--BEEEEEEESGGGCEEEEEEBC
T ss_pred EECCCC--CceEEEEeCCCCCEEEEEcCC
Confidence 876533 68999998 888877766653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-10 Score=127.38 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=134.3
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCcc-----------EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-----------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 909 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~i 909 (1135)
...+..+++++...++++|+...+.+|++++.. ..... .+.. |++|+| ++.+|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 456889999999999999997788889976543 11223 3555 999999 56888888 8899999
Q ss_pred EEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcE
Q 001159 910 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989 (1135)
Q Consensus 910 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 989 (1135)
||+.+.........|..++.++.+.+.. +++++.||.|.+||++.+.... +. ..|++++|||+| .
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-L 175 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-E
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-e
Confidence 9998766556677788889998887653 8889999999999999876421 11 468999999999 4
Q ss_pred EEEEecCeEEEEecCCce---eeccCC------CCCCCCCEEEEEEeeCCCEEEE
Q 001159 990 LLVVHESQISVYDSKLEC---SRSWSP------KDALPAPISSAIYSCDGLLVYA 1035 (1135)
Q Consensus 990 l~~~~d~~v~vwd~~~~~---~~~~~~------~~~h~~~i~~~~~s~d~~~l~~ 1035 (1135)
.+...||.+++|+..+.. ...+.. +.+|...|.++.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 444789999999984444 333421 1246789999999999999886
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=126.02 Aligned_cols=183 Identities=9% Similarity=0.071 Sum_probs=135.2
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.++.+++++... ++++|+.+ .+.+|++..........- ..+.......+.. |++++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~---------~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDS---------TPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSS---------CCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcccc---------ccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 699999999998 67778776 555699765431110000 0000001223556 999999 99999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.|++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998865433 45567888988887754 27788899999999999887653 456899999998
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCc--eeEe------c---CCCCcEEEEEEcCCCCEEEEEe
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.+ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 64 68899999999998877664 4444 2 3678999999999999988654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-06 Score=99.99 Aligned_cols=522 Identities=10% Similarity=0.006 Sum_probs=269.3
Q ss_pred CCCeEEEEEeCCCC-ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-eeeecCCCCCeeEEEe
Q 001159 428 SKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~i~~ 505 (1135)
....|+..++.... ... .+...-..+..++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567888877542 111 12223445789999997774 445555678899999765432 2233333356888999
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
.+.. +.+.++-...+.|.+.+++...........-.....+++.|.+.+|+.... .....|...++. |.....+..
T Consensus 92 D~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~d-G~~~~~l~~ 167 (619)
T 3s94_A 92 DWLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMD-GSSRFIIIN 167 (619)
T ss_dssp ETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETT-SCSCEEEEC
T ss_pred EecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECC-CCceEEEEe
Confidence 8753 256666667899999998865544444344456778999998777765532 124567777765 333333322
Q ss_pred ccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..-.....++++++++.|+.+. ..+.|...+++........... .....++++..+ .+.++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2222567899999877776654 5678999998764443333211 123467788765 44444445778888888777
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc-ccCCCC---ccccc-ccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL-GTIDGS---RLVDV-KPR 739 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~-~~~ 739 (1135)
.. ...+........ .+. .+.+..... ....... .+++.. ..+.. .+-
T Consensus 245 ~~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~---~~n~C~~~ng~Cs~lCl~~~~~~~~~ 296 (619)
T 3s94_A 245 EG-LREIHSDIFSPM------------DIH------------AFSQQRQPN---ATNPCGIDNGGCSHLCLMSPVKPFYQ 296 (619)
T ss_dssp CC-CEECCSCCCCCS------------EEE------------ECCGGGSCC---CCCTTTTTGGGCSSEEEECSSTTSEE
T ss_pred cc-cEEEecCCCCCc------------EEE------------EEccccCCC---ccccccCCCCcccceEECCCCCCCce
Confidence 32 222211100000 000 000000000 0000000 000000 00000 000
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccC
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 819 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 819 (1135)
..+..+.. +. . ... +|.. ....+|+. +..+.|+..++...
T Consensus 297 C~C~~g~~----l~--------------~----d~~-~C~~--~~~~~Ll~-~~~~~i~~i~l~~~-------------- 336 (619)
T 3s94_A 297 CACPTGVK----LL--------------E----NGK-TCKD--GATELLLL-ARRTDLRRISLDTP-------------- 336 (619)
T ss_dssp EECCTTCC----BC--------------T----TSS-CBCS--SCSEEEEE-EESSCEEEEESSST--------------
T ss_pred EeCCchhe----ec--------------c----cCc-ccCC--CCceEEEE-EcccceEEEecCCC--------------
Confidence 00000000 00 0 000 0000 00111222 22333443333211
Q ss_pred eeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcE
Q 001159 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 897 (1135)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 897 (1135)
..........+ -..+.+++|.+.+..|..++ .+.|+.+++........+...-.....+|+.+.++++
T Consensus 337 ------~~~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~l 406 (619)
T 3s94_A 337 ------DFTDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNL 406 (619)
T ss_dssp ------TCCCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred ------ccceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcE
Confidence 00111111122 45578899999777777766 6889999987654433343334567789998745555
Q ss_pred EEEEeCCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEc--CCCcEEEEeCCCCceeceeeeecCCCCCCC
Q 001159 898 IAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 974 (1135)
Q Consensus 898 lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
..+-+..+.|.+.++.... ...+ ...-....+|++.|....|..+. ....|...+++..... ..... .
T Consensus 407 Y~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~~---~--- 477 (619)
T 3s94_A 407 YWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVNT---S--- 477 (619)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEECS---S---
T ss_pred EEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEeC---C---
Confidence 5555567899999987543 3333 33345689999999744444443 2356766676653321 11111 1
Q ss_pred CCCceEEEECCCCcEEEEE--ecCeEEEEecCCceeeccC-CCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 975 LVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWS-PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 975 ~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~-~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
......++++++++.|..+ ..+.|..+++.+.....+. ....|. .++++..+ .++++-...+.|...+..+|.
T Consensus 478 l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P---~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 478 LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHI---FGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSS---CCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCc---EEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 1356799999988777775 4577888888554433332 112223 34555443 445555566778888888873
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-10 Score=136.54 Aligned_cols=244 Identities=11% Similarity=0.131 Sum_probs=161.3
Q ss_pred CCCcceEEEEEcCCCCeEEEEe-----CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC---
Q 001159 406 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--- 477 (1135)
+|...+..++|||||++||.+. .+..|++||+.+++.+.. .+.+. ....++|+ |++ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCC--EEEEEEecCccc
Confidence 4666899999999999999653 235799999999875432 12111 13568999 999 566555553
Q ss_pred ----------cEEEEEcCCCee----eeeecC-CCCCeeEEEeeccCCccEEEEEEc----CCeEEEEeCcCCC-ceeEe
Q 001159 478 ----------MIKVWDVVAGRK----QYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 537 (1135)
Q Consensus 478 ----------~i~iwd~~~~~~----~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~ 537 (1135)
.|++|++.++.. +..... |...+.++.++|++ ++|+.... ++.|++||+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987643 333333 44557788887765 66644332 2589999998764 34455
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--EEEeecccCCceeEEEecCCCCEEEEEeC-CC--eE
Q 001159 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 612 (1135)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg--~i 612 (1135)
..+....... ++++|..|+..+......+.|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555544444 6778887776653322357899999988654 345555555 333 78889998887664 43 68
Q ss_pred EEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC----CcEEEEEcCCC
Q 001159 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 664 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~ 664 (1135)
++|++..+ ....+.... ...+..+.+++++..++....+ +++..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998854 445554332 2245667778888777666544 78999998776
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-09 Score=116.44 Aligned_cols=224 Identities=13% Similarity=0.011 Sum_probs=150.0
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
-..+++|+|+++.+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 356789999877788888888999999998765321 1 123469999999999987765
Q ss_pred CCCeEEEEEeCCCCceeeeeEee-cc-cCCEEEEEEecCCCeEEEEEEcC------CCcEEEEEcCCCeeeeeecCCCCC
Q 001159 428 SKHIVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~-~h-~~~v~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
.+ .|.+||..+++... ..... +. ...+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999988765321 11111 11 23589999999998 4444332 24455555 55543 33233345
Q ss_pred eeEEEeeccCCccEE-EEEEcCCeEEEEeCc--CC-Cc-----eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 500 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
...++|+|++ +.+ ++.+.++.|.+||++ ++ .. ...+......+..++++++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6788998754 555 444567899999986 43 21 112222345678899999998776653 256799
Q ss_pred EEECCCCeEEEEeecccCCceeEEEec-CCCCEEEEEeC
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~~~~~ 608 (1135)
+||. +++.+..+..+.. .+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 9998 6777777776554 68999998 88887766543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-09 Score=121.22 Aligned_cols=269 Identities=9% Similarity=0.043 Sum_probs=163.8
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc------cCCceeEEEecCCCCEEEEEeC-----CC
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAGD-----EF 610 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~i~~s~~~~~l~~~~~-----dg 610 (1135)
..+..++++++|+.+++.....++..+|...+ +++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 57889999999998887642111112444444 5553 333211 1126889999999876665433 57
Q ss_pred eEEEEECCCCceEEEEeCCCC----CCCcceEEEcCCCCEE-EEEE---CCCcEEEEEcCCCchhhhhccccccccccCC
Q 001159 611 QIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLL-AVTT---SDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
.|.+||+.+++.+..+..... ...+..+++++++..+ ++.. .++.|.+||..++ +..+.+.+|.....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~--- 169 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAP--- 169 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSC---
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccc---
Confidence 899999999998877764321 1246899999865444 4444 5789999998877 33332222110000
Q ss_pred CCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCcccee
Q 001159 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1135)
Q Consensus 683 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~ 762 (1135)
T Consensus 170 -------------------------------------------------------------------------------- 169 (343)
T 2qe8_A 170 -------------------------------------------------------------------------------- 169 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC
Q 001159 763 ALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 842 (1135)
....+.++|..+.+...+|.++.| ..
T Consensus 170 --------------~~~~~~~~g~~~~~~~~~g~~~~~----------------------------------------~~ 195 (343)
T 2qe8_A 170 --------------EDIDLVIDGVPVQIGQPDGTVIRP----------------------------------------HL 195 (343)
T ss_dssp --------------CSCCCEETTEECBEECTTSCEECC----------------------------------------CC
T ss_pred --------------cccceeECCEEEEeccCCCceece----------------------------------------ec
Confidence 001122344444444445554444 22
Q ss_pred ceEEEEeecCCCEEEEEe-C-CeEEEEECC---Ccc-----EEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001159 843 SAACIALSKNDSYVMSAS-G-GKVSLFNMM---TFK-----VMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 910 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-d-g~i~vwd~~---~~~-----~~~--~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iw 910 (1135)
.+..++++|||+.|+++. . ..+..++.. .+. ... ...++......+++++ +|.++++...++.|.+|
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~ 274 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVI 274 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEE
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEE
Confidence 356788899988888776 3 355555432 110 000 1112344567799999 78888888889999999
Q ss_pred EcccceeeEEecC-cCCCeEEEEEcCCCCeEEEEcCCCcEEEE
Q 001159 911 NVRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMW 952 (1135)
Q Consensus 911 d~~~~~~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iw 952 (1135)
|..+++....... +...+++++|.++++++++.+..+.+.+|
T Consensus 275 d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 275 TSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 9856664333322 24568999999999988888765544333
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-09 Score=115.71 Aligned_cols=224 Identities=11% Similarity=0.015 Sum_probs=144.8
Q ss_pred EEEEEecCCcce-eEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
.+.+|+|++..+ ++...++.|..|+.. ++..... . . ...+.+++++++|++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~--~---~-~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLA----------------------SGRKTVH--A---L-PFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETT----------------------TTEEEEE--E---C-SSCEEEEEEEETTEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECC----------------------CCcEEEE--E---C-CCcceEEEEeCCCeE
Confidence 678899985544 444457778777543 2222111 1 1 456889999999998
Q ss_pred EEEEeCCeEEEEECCCccEEEEEeC----CCCCeEEEEEecCCCcEEEEEeC------CCcEEEEEcccceeeEEecCcC
Q 001159 856 VMSASGGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGME------DSSVQIYNVRVDEVKTKLKGHQ 925 (1135)
Q Consensus 856 la~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h~ 925 (1135)
+++. ++.|.+||..+++....... ....+..++++| +|+++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 45599999988876433221 123588999999 7776665432 24555555 55543 333344
Q ss_pred CCeEEEEEcCCCCeEE-EEcCCCcEEEEeCC--CC-ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEE
Q 001159 926 NRITGLAFSPTLNALV-SSGADAQLCMWSID--KW-EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISV 1000 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~v 1000 (1135)
....+++|+||++.|+ +.+.++.|.+|++. ++ +......+....... ..+..++++++|.++++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 5578999999998664 44567889999986 54 321111121111111 345689999999887775 4688999
Q ss_pred EecCCceeeccCCCCCCCCCEEEEEEe-eCCCEEEEEeCC
Q 001159 1001 YDSKLECSRSWSPKDALPAPISSAIYS-CDGLLVYAGFCD 1039 (1135)
Q Consensus 1001 wd~~~~~~~~~~~~~~h~~~i~~~~~s-~d~~~l~~~~~d 1039 (1135)
|+.+++.+..+... ...+++++|+ +|++.|++++..
T Consensus 256 ~d~~g~~~~~i~~~---~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECCCCCEEEEEECC---CCCcEEEEEecCCCCEEEEEecC
Confidence 99976666555432 4569999999 898877655443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-09 Score=117.52 Aligned_cols=230 Identities=11% Similarity=0.038 Sum_probs=155.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
.......+.|+|+|+.+++++..++.|..|+.. ++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 445678899999999888888889999999974 43211 223556789999999999777
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecc-cCCEEEEEEecCCCeEEEEE----EcC-------------CCcEEEEEcCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 486 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s----~~~-------------d~~i~iwd~~~ 486 (1135)
+...++.|.+|+.+ ++.........+. ...+.++++.++|. +++| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 66667889999986 4322111111111 13467899999998 6665 332 25677788766
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
++..... .......++|+|++ ..|+.+... +.|.+|++..... .............++++++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654333 34456789998865 667666654 7899999875431 111122233455788999999544
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCe
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~ 611 (1135)
+. .+.|.+|+. +++.+..+.... .+.+++|+++++.|+.++.++.
T Consensus 255 ~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred ec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence 43 224999998 577777777654 4788999999998888877643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-09 Score=129.52 Aligned_cols=138 Identities=9% Similarity=0.009 Sum_probs=89.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCc----------E-EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW----------C-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 57888888999999999999888776543221 0 11222 3456777653 789999999999999
Q ss_pred EEeecc-cCCceeEEEecC--CCCEEEEEe------CCCeEEEEECCCCceEEEEeCCCC--------------------
Q 001159 581 RTYSGF-RKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVDADGG-------------------- 631 (1135)
Q Consensus 581 ~~~~~~-~~~~v~~i~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 631 (1135)
..+... .......+..+| .+..+++++ .+|.|+.||..+|+.+..+.....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 888763 110111111122 133455543 378999999999999887753110
Q ss_pred ---------CCCcceEEEcCCCCEEEEEECCCc
Q 001159 632 ---------LPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 632 ---------~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
......++++|++.++++++.++.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~ 257 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGS 257 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCC
Confidence 001135788888888888887764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-09 Score=128.21 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=130.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCC----------e-eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..|+.++.|+.+..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 5667777899999999999998877643211 1 12222 2268888999999999999999988776
Q ss_pred cCC-C----CcEEE-EEEcCCCCEEEEEecCCC--CCCeEEEEECCCCeEEEEeecccCC--------------------
Q 001159 538 DAP-G----NWCTM-MAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR-------------------- 589 (1135)
Q Consensus 538 ~~~-~----~~i~~-~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~-------------------- 589 (1135)
... . ..+.+ ... .+..+++++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 2 11111 111 2345555442111 2688999999999999887653211
Q ss_pred -----------ceeEEEecCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEeCCCCC-------
Q 001159 590 -----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL------- 632 (1135)
Q Consensus 590 -----------~v~~i~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~------- 632 (1135)
....++++++++.++.+..++ .|..+|..+++.+..++...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 113578889999999887664 5999999999999888753221
Q ss_pred CCcceEEEcCCC---CEEEEEECCCcEEEEEcCCCc
Q 001159 633 PASPRLRFNKEG---SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 633 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.....+....+| ..++.++.+|.+.++|..+++
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 112222333467 688999999999999999993
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-09 Score=118.91 Aligned_cols=278 Identities=8% Similarity=-0.051 Sum_probs=177.2
Q ss_pred ccccCCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEe---------ccceEEEEEcCCccccccCCceeeccccccc
Q 001159 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1135)
.+..+|..+.+.+.++. ...+ .+.|||||++++++.+ .++.|.+||+.+++.+.+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v-----~~--- 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-----PD--- 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-----TT---
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC-----CC---
Confidence 34456777888888888 4444 8999999997665542 478999999999987654100 00
Q ss_pred chhhhhccCCCcceEEEEEcCCCCeEEEEeC--CCeEEE--EEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEE
Q 001159 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHL--YTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473 (1135)
Q Consensus 398 ~~~~~~~~~h~~~V~~v~~spd~~~las~~~--dg~i~i--wd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~ 473 (1135)
..... .......+++||||++|+++.. +..+.+ +|+.+ +. .+.- .+. +.+.|+++. .+++.
T Consensus 117 --~~~~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~---~i~v-~~~---~~~~p~g~~-~~~~~ 181 (368)
T 1mda_H 117 --APRFS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQ---LTKS-ASC---FHIHPGAAA-THYLG 181 (368)
T ss_dssp --SCSCC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EE---EEEC-SSC---CCCEEEETT-EEECC
T ss_pred --ccccc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ce---EEEC-CCc---eEEccCCCe-EEEEE
Confidence 00000 0123557999999999999874 467888 88876 22 2221 111 234566665 45677
Q ss_pred cCCCcEEEEEcCC-----Ceeee----eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee--EecCC--
Q 001159 474 GDDKMIKVWDVVA-----GRKQY----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAP-- 540 (1135)
Q Consensus 474 ~~d~~i~iwd~~~-----~~~~~----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~-- 540 (1135)
+.|+.+.+.|+.+ ++... .+.-...+. . .+.+ ..++..+. +.+.+.|........ .+...
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~ 254 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNES 254 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCT
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEeccc
Confidence 7788888889887 44331 111122333 2 3333 45555555 899999986543221 11111
Q ss_pred -----CC---cEEEEEEcCCCCEEEEEecCCCC-----CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEE
Q 001159 541 -----GN---WCTMMAYSADGTRLFSCGTSKEG-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAA 606 (1135)
Q Consensus 541 -----~~---~i~~~~~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~ 606 (1135)
.. ....++++||++.++++.....+ ...+.++|..+++.+..+.... ....++|++||+ .+++.
T Consensus 255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEE
T ss_pred cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEc
Confidence 10 11126899999998875420001 1235699999999998887654 478899999997 45666
Q ss_pred e-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 607 G-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 607 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 333 ~~~~~~VsVID~~t~kvv~~I~vg~~---P~~i~~~~ 366 (368)
T 1mda_H 333 SAGTEVLDIYDAASDQDQSSVELDKG---PESLSVQN 366 (368)
T ss_dssp ETTTTEEEEEESSSCEEEEECCCCSC---CCEEECCC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCC---CCEEEeec
Confidence 6 599999999999999999975533 35666554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-09 Score=119.70 Aligned_cols=273 Identities=16% Similarity=0.108 Sum_probs=172.2
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEe-c-CCCCEEEEEe------------------CCC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG------------------DEF 610 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~-s-~~~~~l~~~~------------------~dg 610 (1135)
+||++++.+.. .+..|.+.|+.+.+....+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48999998653 36789999999999888665444446778887 5 9999999985 345
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCC
Q 001159 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+.|..+.+.+..+...+. ...++++|+|+++++.+.+.. .+ ..+......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se-------~~-~~i~~~~~~---------------- 228 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSE-------KG-MTLPEMTAA---------------- 228 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTT-------CC-SSHHHHTCC----------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcc-------cC-cchhhcccc----------------
Confidence 799999999999988875432 367889999999999887532 11 000000000
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcc
Q 001159 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 770 (1135)
.-..+.+.+...
T Consensus 229 ----------------------------------------------------~~d~v~V~~~~~---------------- 240 (595)
T 1fwx_A 229 ----------------------------------------------------EMDHIVVFNIAE---------------- 240 (595)
T ss_dssp ----------------------------------------------------SEEEEEEEEHHH----------------
T ss_pred ----------------------------------------------------ccceEEEeeccc----------------
Confidence 001111111110
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
...+.++|++... +.+.+.|....+ +......++. .....++.++
T Consensus 241 -------~~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ipv----g~~PhGv~~s 285 (595)
T 1fwx_A 241 -------IEKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIPI----ANNPHGCNMA 285 (595)
T ss_dssp -------HHHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEEE----ESSCCCEEEC
T ss_pred -------eeEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEec----CCCceEEEEc
Confidence 0011233332222 224554433210 1110001111 3344579999
Q ss_pred cCCCEEEEEe--CCeEEEEECCCcc------------EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc--
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-- 914 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-- 914 (1135)
|||+++++++ +++|.++|+.+.+ ....+. -......++|+| +|....+...|++|.+||+.+
T Consensus 286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHH
T ss_pred CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhh
Confidence 9999999987 6899999999763 333332 345688999999 775555667899999999987
Q ss_pred --------ceeeEEecCcCCCe-----EEEEEcCCCCeEEEEcC---CCc----------EEEEeCCCCc
Q 001159 915 --------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSGA---DAQ----------LCMWSIDKWE 958 (1135)
Q Consensus 915 --------~~~~~~l~~h~~~i-----~~l~~s~d~~~l~s~~~---D~~----------i~iwd~~~~~ 958 (1135)
.+.+..+..|-.+- .++.++|||++|+++.. |+. -.++|++.++
T Consensus 364 ~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 364 RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 45667776654321 23456899999998753 543 2889996655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-08 Score=110.84 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=154.4
Q ss_pred CCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 406 DAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.........+|+|+|+ ++++...++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3455677899999999 56666678899999884 33 22 3444667799999999998 6666666788999997
Q ss_pred CCCeeeeeecCC-----CCCeeEEEeeccCCccEEEE----EEc-------------CCeEEEEeCcCCCceeEecCCCC
Q 001159 485 VAGRKQYTFEGH-----EAPVYSVCPHHKESIQFIFS----TAI-------------DGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 485 ~~~~~~~~~~~h-----~~~v~~i~~~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~ 542 (1135)
. ++.. .+..+ ...+..+++.++ |.+.++ |.. .+.|..||..+++..... ...
T Consensus 115 ~-g~~~-~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 115 D-GQAH-LLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp T-SCEE-EEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred C-CCEE-EEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 5 5532 22211 134667888764 467765 322 256777776555544332 334
Q ss_pred cEEEEEEcCCCCEEEEEecCC--CCCCeEEEEECCCCeEE--EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 543 WCTMMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
....++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+. .+++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 567899999999888765310 01267999998765421 1221111224556889999984 444444 4999998
Q ss_pred CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.++.+..+.... .+.+++|+++++.|..++.++..+
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 477777776543 478999999999888888764333
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-08 Score=124.04 Aligned_cols=201 Identities=11% Similarity=0.086 Sum_probs=127.4
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC----------CE-EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----------GV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----------~v-~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+.+++.++.|.-+|..+|+.+-.. ..+.. .+ ..+++ ++. .++.++.|+.|..+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 567777778888999999988765422 11110 01 11222 244 57888899999999999999
Q ss_pred eeeeecCC--CCCeeEEEeecc-CCccEEEEEE------cCCeEEEEeCcCCCceeEecCCC------------------
Q 001159 489 KQYTFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG------------------ 541 (1135)
Q Consensus 489 ~~~~~~~h--~~~v~~i~~~~~-~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~------------------ 541 (1135)
.+..+... ......+...|. .+ ..++.++ .+|.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98776542 111111111110 02 3444443 37899999999999877654210
Q ss_pred -------------CcEEEEEEcCCCCEEEEEecCCC-----------CC----CeEEEEECCCCeEEEEeecccC-----
Q 001159 542 -------------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK----- 588 (1135)
Q Consensus 542 -------------~~i~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~----- 588 (1135)
.....++++|++..++.+..+.. ++ +.|..+|..+|+.+..+.....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 00125788898888888764210 01 2499999999999998875311
Q ss_pred ---CceeEEEecCCCC---EEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 589 ---RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 589 ---~~v~~i~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..........+|+ .++.++.+|.++++|..+|+++.....
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI 347 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence 0111122223554 788899999999999999999866543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-07 Score=107.21 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=100.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCC---------CCCeeE-EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~-i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 538 (1135)
.++.++.++.|..+|..+|+.+..+... ...+.+ +.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 5777888999999999999988766542 122322 222 22678889999999999999988877665
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc----eeEEEecCCCCEEEEEeCCCeEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~i~~s~~~~~l~~~~~dg~i~i 614 (1135)
............ +..+++++. ++.|..+|..+|+.+..+....... ....... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221112222 345666543 7789999999999988876543210 0112222 457888888999999
Q ss_pred EECCCCceEEEEeC
Q 001159 615 WDMDNMNMLTTVDA 628 (1135)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1135)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988777654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-09 Score=117.34 Aligned_cols=222 Identities=7% Similarity=-0.089 Sum_probs=144.5
Q ss_pred eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe----------CCCcEEEEEcccceeeEEecCc-------C
Q 001159 863 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKLKGH-------Q 925 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~h-------~ 925 (1135)
+|.++|..+++.+.++.....+ .++|+| |+++++++. .++.|.+||+.+++.+.++..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8999999999999999765555 799999 788887776 3789999999999999888643 1
Q ss_pred CCeEEEEEcCCCCeEEEEcC--CCcEEE--EeCCCCceeceeeeecCCC-CCCCCCCceEEEE-----------------
Q 001159 926 NRITGLAFSPTLNALVSSGA--DAQLCM--WSIDKWEKLKSRFIQAPAG-RQSPLVGETKVQF----------------- 983 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~~--D~~i~i--wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~----------------- 983 (1135)
.....++|||||++|+.+.. +..+.+ +|..+ ... +..... +......-..+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~--i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL--TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE--EECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE--EECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34668999999999998864 456888 99876 111 111000 0000000011122
Q ss_pred --------------------CCCCcE-EEEEecCeEEEEecCCc---eeeccCCCC------C-CCCCEEEEEEeeCCCE
Q 001159 984 --------------------HNDQTH-LLVVHESQISVYDSKLE---CSRSWSPKD------A-LPAPISSAIYSCDGLL 1032 (1135)
Q Consensus 984 --------------------s~dg~~-l~~~~d~~v~vwd~~~~---~~~~~~~~~------~-h~~~i~~~~~s~d~~~ 1032 (1135)
++++.. ++++. +.|.+.|.... .+..+.... + +......++|++|+++
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 223332 33344 66777776321 222221110 0 0111112689999998
Q ss_pred EEEEeC-C--------CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEEecC
Q 001159 1033 VYAGFC-D--------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPS 1101 (1135)
Q Consensus 1033 l~~~~~-d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W~~~ 1101 (1135)
++++.. + +.+.++|+.+++.+.++... ..+.++.++| ||+ ++++.. .+++|.++|+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-----------~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-----------HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-----------CCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 887643 2 35679999999999887644 2456899999 555 667777 59999999999
Q ss_pred CCcc
Q 001159 1102 DAEL 1105 (1135)
Q Consensus 1102 ~~~~ 1105 (1135)
+.+.
T Consensus 346 t~kv 349 (368)
T 1mda_H 346 SDQD 349 (368)
T ss_dssp SCEE
T ss_pred CCcE
Confidence 9873
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-08 Score=120.04 Aligned_cols=279 Identities=9% Similarity=0.030 Sum_probs=177.0
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+++++.++.|.-+|..+|+.+ |................+. ....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~~~~~-~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTGFKGCCDV-VNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGGGGSSSCS-CCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEE-------EEEcCCCCccccccccccC-CCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 455667889999999999875 3222111000000000000 0011222 56788888999999999999998
Q ss_pred ceeeeeEeecc-c----CCEEEEEEecCCCeEEEEEEc------CCCcEEEEEcCCCeeeeeecCCCCC-----------
Q 001159 442 ELRQHLEIDAH-V----GGVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEGHEAP----------- 499 (1135)
Q Consensus 442 ~~~~~~~l~~h-~----~~v~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~----------- 499 (1135)
.+-. +..+ . ..+.+.-...++ .++.++ .++.|+.+|..+|+.+.++......
T Consensus 150 ~~W~---~~~~~~~~~~~~~~~~p~v~~~---~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 150 EVWH---QNTFEGQKGSLTITGAPRVFKG---KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp EEEE---EETTTTCCSSCBCCSCCEEETT---EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred EEee---ecCCcCcCcCcccccCcEEECC---EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 6543 2222 1 112111111234 344443 2799999999999998777532211
Q ss_pred ---------------------eeEEEeeccCCccEEEEEEcCC-------------------eEEEEeCcCCCceeEecC
Q 001159 500 ---------------------VYSVCPHHKESIQFIFSTAIDG-------------------KIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 500 ---------------------v~~i~~~~~~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~ 539 (1135)
...++++|.. ..++.++.++ .|..+|.++++.+..+..
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~--~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAEL--NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccCceeEeCCCcccccceeEcCCC--CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 1245566654 6777777664 599999999988876554
Q ss_pred CCC---------cEEEEEEcCCC---CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC----------ce------
Q 001159 540 PGN---------WCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----------SL------ 591 (1135)
Q Consensus 540 ~~~---------~i~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----------~v------ 591 (1135)
... ....+....+| ..++.+. .++.++++|..+|+.+..+...... .+
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAP----KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEEC----CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 211 12223333467 4566654 4889999999999998776532110 01
Q ss_pred ------------------eEEEecCCCCEEEEEeC-------------------------------------------CC
Q 001159 592 ------------------GVVQFDTTRNRFLAAGD-------------------------------------------EF 610 (1135)
Q Consensus 592 ------------------~~i~~s~~~~~l~~~~~-------------------------------------------dg 610 (1135)
..++++|++..+++... .|
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 14678999888887543 27
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.|..||+.+++.+..+.... .+....+..++.++++++.||.+++||..+++
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 89999999999988886532 34555667778889999999999999999993
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-08 Score=108.85 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=147.7
Q ss_pred cCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-
Q 001159 783 NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 860 (1135)
Q Consensus 783 ~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~- 860 (1135)
.++++|++.+. ++.|.++|+.+....+.-..+- + ..++.. -.+ ......+..+||| +++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i-------e--~~~~~~--~~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI-------E--PEEVKK--VSG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE-------C--HHHHHH--HHC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee-------c--hhhccc--ccC----CCcccceeECCCe-EEEEcCC
Confidence 67777776655 7889999876433222111000 0 000000 000 2234567888999 555543
Q ss_pred C------CeEEEEECCCccEEEEEeCCCC---CeEEEEEecCCCcEEEEEe-------------------CCCcEEEEEc
Q 001159 861 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 912 (1135)
Q Consensus 861 d------g~i~vwd~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~ 912 (1135)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999863222 133578899 888888774 3689999999
Q ss_pred ccceeeEEecCc--CCCeEEEEE--cCCCCeEEEEc------CCCcEEEEeCCCCceeceeeeecCC----CCCC-----
Q 001159 913 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPA----GRQS----- 973 (1135)
Q Consensus 913 ~~~~~~~~l~~h--~~~i~~l~~--s~d~~~l~s~~------~D~~i~iwd~~~~~~~~~~~~~~~~----~~~~----- 973 (1135)
.+++.+.++..- ......|.| +|+++++..++ .+++|.+|..+.++-.....+.... +...
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 234556666 99999887776 4568887766554321111111110 0000
Q ss_pred ---CCCCceEEEECCCCcEEEEE--ecCeEEEEec-C---CceeeccCCCCC-----C------CCCEEEEEEeeCCCEE
Q 001159 974 ---PLVGETKVQFHNDQTHLLVV--HESQISVYDS-K---LECSRSWSPKDA-----L------PAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 974 ---~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~-~---~~~~~~~~~~~~-----h------~~~i~~~~~s~d~~~l 1033 (1135)
.......+.+|+||++|.++ ..+.|.+||+ . .+.+..+..... | ...-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 01346889999999999996 4689999998 2 233333322100 0 1124678999999999
Q ss_pred EEEe
Q 001159 1034 YAGF 1037 (1135)
Q Consensus 1034 ~~~~ 1037 (1135)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=118.18 Aligned_cols=295 Identities=10% Similarity=-0.015 Sum_probs=180.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..+..++.++.|..|| .+++...........+.++...+++... .++ .+ |..+|. +++.+..+..... ..
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t-----~~-l~~~d~-~g~~~~~~~~~~~-~~ 100 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGS-----DK-VYAINP-DGTEKWRFDTKKA-IV 100 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSS-----CE-EEEECC-CGGGGGGSCC------
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-Eec-----Cc-EEEECC-CCcEEEEEECCCC-cc
Confidence 4577777888899999 7666655544444456777777777544 443 23 888886 6665544433222 22
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
....+. +..++.++.++.|..+|.. ++.......... .+.++...+++. +..++.++.+..+|.. +. ....+
T Consensus 101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-~~~~~ 172 (330)
T 3hxj_A 101 SDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-EKWRF 172 (330)
T ss_dssp CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-SC-EEEEE
T ss_pred cCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-EeEEE
Confidence 223333 5678888889999999998 777766654432 466777777776 5557778899999876 52 11111
Q ss_pred cccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccc
Q 001159 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~ 751 (1135)
...
T Consensus 173 ~~~----------------------------------------------------------------------------- 175 (330)
T 3hxj_A 173 KTN----------------------------------------------------------------------------- 175 (330)
T ss_dssp ECS-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred cCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCccee
Q 001159 752 IPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT 831 (1135)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1135)
...+ .++.+.++|. +.+++ +.+..++ . ++....
T Consensus 176 --------------------~~~~-~~~~~d~~g~-l~v~t--~~l~~~d-~----------------------~g~~~~ 208 (330)
T 3hxj_A 176 --------------------DAIT-SAASIGKDGT-IYFGS--DKVYAIN-P----------------------DGTEKW 208 (330)
T ss_dssp --------------------SCCC-SCCEECTTCC-EEEES--SSEEEEC-T----------------------TSCEEE
T ss_pred --------------------CCce-eeeEEcCCCE-EEEEe--CEEEEEC-C----------------------CCcEEE
Confidence 0001 2333444554 33333 4455543 1 111111
Q ss_pred ccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 832 NDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 832 ~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
.... . ...+.+++++++|.+.+...++.|..+|. +++.+..+......+.++.+.+ ++ .|..++.+|.|..+|
T Consensus 209 ~~~~---~-~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 209 NFYA---G-YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp EECC---S-SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEEC
T ss_pred EEcc---C-CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEEC
Confidence 1111 1 34567788888887666555788888874 5666666665555555666765 45 466688888899999
Q ss_pred cccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 912 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 912 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
. +++.+..+......+.++...++|.+ ..++.+|.+.+...+..
T Consensus 282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 282 P-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp T-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred C-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 6 67777776655667888888788865 45788999998876653
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-05 Score=91.02 Aligned_cols=207 Identities=11% Similarity=-0.004 Sum_probs=119.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
.-..+.+++|++.+..++.+-...+.|..++++....... ++...-.....+++.+.+..|.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly 99 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLY 99 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEE
Confidence 3456889999997776776666678898888875421110 0122224688999999666555
Q ss_pred EE-eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEE-cCCCcEEEEEcCCCeeeeee-cCCCCCee
Q 001159 425 VA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVY 501 (1135)
Q Consensus 425 s~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 501 (1135)
.+ ...+.|.+.++++..... .+...-.....|++.|.+.. +++|- +..+.|...++. |.....+ ...-...+
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 54 567899999988643211 12233345678999998664 33333 334677777754 3333333 22334578
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++.+.. +.+.++-...+.|...|++.................+++..+ .|+.+.. ..+.|...|..+|+..
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 89998754 244455556678888888754333322222223346676554 5555432 3667888888776543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-07 Score=104.79 Aligned_cols=256 Identities=11% Similarity=0.071 Sum_probs=163.2
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+.+++.++.|..+|..+|+.+-+ ..... .....++ . .+..+++++.++.|..+|..+++
T Consensus 106 v~v~~~~g~l~a~d~~tG~~~W~-------~~~~~--------~~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 106 VYIGSEKAQVYALNTSDGTVAWQ-------TKVAG--------EALSRPV----V--SDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEEETTSEEEEEETTTCCEEEE-------EECSS--------CCCSCCE----E--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEE-------EeCCC--------ceEcCCE----E--ECCEEEEEcCCCeEEEEECCCCc
Confidence 55677899999999999976532 11100 0011111 1 24578888899999999999887
Q ss_pred ceeeeeEeecccCCE------EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC----ee---EEEeecc
Q 001159 442 ELRQHLEIDAHVGGV------NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----VY---SVCPHHK 508 (1135)
Q Consensus 442 ~~~~~~~l~~h~~~v------~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~---~i~~~~~ 508 (1135)
.+... .... .+ ...... + . .++.++.++.|..+|..+|+.+......... +. .+...|.
T Consensus 165 ~~W~~---~~~~-~~~~~~~~~~~~~~-~-~--~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~ 236 (376)
T 3q7m_A 165 VKWTV---NLDM-PSLSLRGESAPTTA-F-G--AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV 236 (376)
T ss_dssp EEEEE---ECCC------CCCCCCEEE-T-T--EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE
T ss_pred EEEEE---eCCC-CceeecCCCCcEEE-C-C--EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE
Confidence 65422 1111 11 112222 3 3 5777888999999999999988766532110 00 0111111
Q ss_pred CCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC
Q 001159 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
-.+..++.++.++.+..+|..+++........ ....+.. ++..++.+.. ++.|..+|..+|+.+........
T Consensus 237 ~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~~ 308 (376)
T 3q7m_A 237 VVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLLH 308 (376)
T ss_dssp EETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTTT
T ss_pred EECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccCC
Confidence 12257888889999999999988877665432 2334433 3556666653 67899999999999887763222
Q ss_pred CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc-eEEEcCCCCEEEEEECCCcEEEEE
Q 001159 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 589 ~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
..+...... +..+++++.+|.|+++|..+++.+........ .+. .... .+..|++++.+|.|..|+
T Consensus 309 ~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~--~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 309 RLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS--GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTT--CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 123333332 57889999999999999999999888775322 222 2222 245788899999999886
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.2e-10 Score=125.68 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=113.3
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
++..+++++.||.|+.||..+|+.+. .+.. +.+.+..+..++. .+++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67889999999999999999998665 3333 4455555667776 677888999999999999988777654321
Q ss_pred CeeEEEeeccC-CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 499 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 499 ~v~~i~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
... ..+|.- .+..+++++.|+.++.||..+++.+..+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 111111 23578889999999999999988877665543 2345668888888764 788999999999
Q ss_pred eEEEEeecccCCceeEEEecCCC---CEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+.+..+.... .....++.+. ..+++++.||.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9877665321 1223344432 5677888999999999999998887764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=0.00045 Score=87.48 Aligned_cols=576 Identities=9% Similarity=0.050 Sum_probs=281.0
Q ss_pred eEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----CCeEEE
Q 001159 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 425 (1135)
Q Consensus 350 ~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~~~las 425 (1135)
.++++-.+| +++.|+..|.=.+|.+.....-....+.+-+ .+ ..-++|.+++.... ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 566666666 5778888888888887654221000000000 01 23467777776432 234554
Q ss_pred Ee---CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec---CCCeEEEEEEcCCCcEEEEEcCCCeeeeee--cCCC
Q 001159 426 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHE 497 (1135)
Q Consensus 426 ~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~ 497 (1135)
++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+....+.+ .|+.+.. ..+... .+-.
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNG-EEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEET-TEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeC-Cccccccccccc
Confidence 43 467888875433221111112332 24566665432 233 5666665655 4555422 222222 1111
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+.+..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111222111111 2232222 2346666665444444554433 3566666543 4555553 35677777766
Q ss_pred CeEEEEeecccCCceeEEEecCC------CCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCcceEEEc--CCCCEE
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN--KEGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l 647 (1135)
+++....+..-...|.|+++.+. +.+++.|.. |++|+|+++.+.+.+........ ....++.+. ....+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 65433222222337999998863 368888886 99999999998877766554321 123444433 234578
Q ss_pred EEEECCCcEEEEEcC--CCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc
Q 001159 648 AVTTSDNGIKILANS--DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
..|-.||.+.-+.+. ++ .+... . ....|.. |.. +..+
T Consensus 621 ~igl~dG~l~~~~~d~~tg-~l~d~----r-----------------~~~LG~~------------------pv~-L~~~ 659 (1158)
T 3ei3_A 621 LCALGDGALFYFGLNIETG-LLSDR----K-----------------KVTLGTQ------------------PTV-LRTF 659 (1158)
T ss_dssp EEEETTSEEEEEEECTTTC-CEEEE----E-----------------EEECCSS------------------CCE-EEEE
T ss_pred EEEeCCCeEEEEEEcCCCC-ccccc----e-----------------eEEcCCC------------------ceE-EEEE
Confidence 889999998766553 22 11100 0 0000100 000 0000
Q ss_pred ccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCC--cceeEecccceeeeEEec
Q 001159 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSG--LSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg--~~l~~~~~dg~i~iw~~~ 803 (1135)
.. .+...+.+.++....++.... ......+.. ..+.....|+... .-++..+ ++.++|..+.
T Consensus 660 ~~------~~~~~V~a~s~rp~liy~~~~-----~l~~s~l~~----~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~ 723 (1158)
T 3ei3_A 660 RS------LSTTNVFACSDRPTVIYSSNH-----KLVFSNVNL----KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTID 723 (1158)
T ss_dssp ES------SSCEEEEEESSSCEEEEESSS-----SEEEEEBSS----SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEEC
T ss_pred ee------CCceeEEEECCCCEEEEEcCC-----ceEEeccCh----HHhceEeccCcccCCCcEEEEc-CCceEEEEec
Confidence 00 000111111121111111110 011101100 0110222343221 1133333 4457776653
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-----------------------
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----------------------- 860 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~----------------------- 860 (1135)
... ......++- ...+..++++|+.+.++++.
T Consensus 724 ~~~---------------------~~~~~~ipL----~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1158)
T 3ei3_A 724 EIQ---------------------KLHIRTVPL----YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 778 (1158)
T ss_dssp CSS---------------------SEEEEEEEC----SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHC
T ss_pred ccC---------------------CeeEEEEeC----CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhh
Confidence 210 000000111 33445555555544333221
Q ss_pred ---------------------------CCeEEEEECCCccEEEEEeCC-CCCeEEEEE---ecCCCcEEEEEe-------
Q 001159 861 ---------------------------GGKVSLFNMMTFKVMTMFMSP-PPAATFLAF---HPQDNNIIAIGM------- 902 (1135)
Q Consensus 861 ---------------------------dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~---sp~~~~~lasg~------- 902 (1135)
.+.|++.|..+++.+..+.-. ...+.+++. ..+...+|++|+
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 779 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp SEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred hhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 134788888888877766533 334555553 332357898887
Q ss_pred ---CCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc
Q 001159 903 ---EDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 978 (1135)
Q Consensus 903 ---~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 978 (1135)
..|.|++|++..+++.... ....++|++|+-- +|++||.. ..+|++|++...+.+...+ . .. ..+
T Consensus 859 ~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~-~~------~~i 927 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-N-HY------NNI 927 (1158)
T ss_dssp SSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-E-EC------CCS
T ss_pred CCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-e-cc------ccE
Confidence 3488999999755432221 1346789998754 45555544 4689999998765333111 1 01 112
Q ss_pred eEEEECCCCcEEEEEe-cCeEEEE--ecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 979 TKVQFHNDQTHLLVVH-ESQISVY--DSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~~~-d~~v~vw--d~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
..+.....+.+++++. -..|.++ +.....+..+. .+.+...++++.|-.++ .++.+..+|.|.+...+.
T Consensus 928 ~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 928 MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 3333334567777763 3445554 44333333322 23446789999997665 566689999999998765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6.5e-08 Score=109.87 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=161.6
Q ss_pred cCCCEEEEEe--CCeEEEEECCCccEEEEEeCC-CCCeEEEEE-e-cCCCcEEEEEe------------------CCCcE
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAF-H-PQDNNIIAIGM------------------EDSSV 907 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~-s-p~~~~~lasg~------------------~dg~v 907 (1135)
+||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999999887 578999999999988866533 356889998 5 8 788888774 34689
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC--------------------------------------cE
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA--------------------------------------QL 949 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~--------------------------------------~i 949 (1135)
.+.|..+.+.+..+.--. ....++++|||+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888776322 457789999999999888553 36
Q ss_pred EEEeCCC--CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecC-Cc------------eeeccC
Q 001159 950 CMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSK-LE------------CSRSWS 1012 (1135)
Q Consensus 950 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~-~~------------~~~~~~ 1012 (1135)
.+.|..+ ++.. ...+... ....++.++|||++++++ .+.+|.++|+. .+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 6666666 2210 1112221 234689999999999996 57899999994 32 222222
Q ss_pred CCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC----------ceeeeeeCCceeccccccCCCCccEEEEecCCC
Q 001159 1013 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1013 ~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1135)
. ......++|++||...++.-.|+.|.+||+++ ...+.++..+. .|.+ .....+...+| |
T Consensus 329 v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpGh----~~~~~g~t~~~-D 398 (595)
T 1fwx_A 329 L----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGH----LKTVMGETLDA-T 398 (595)
T ss_dssp C----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEE----EEETTTTSTTC-C
T ss_pred C----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-cccc----ceeccceEeCC-C
Confidence 2 45678999999995455667899999999987 45566665442 1111 01112234456 8
Q ss_pred CCEEEEEecCC--cE-----------EEEecCCCc
Q 001159 1083 PNQIALGMSDG--AV-----------HVVEPSDAE 1104 (1135)
Q Consensus 1083 ~~~l~sg~~dg--~v-----------~~W~~~~~~ 1104 (1135)
|++|+++..-. .+ .++|++.++
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 89998866532 23 889997766
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-07 Score=102.78 Aligned_cols=239 Identities=14% Similarity=0.138 Sum_probs=151.4
Q ss_pred EEe--cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCC-CcceEEEEEcCCCCeEEEEeCC
Q 001159 353 DFH--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGPDGLMLGVAFSK 429 (1135)
Q Consensus 353 ~~s--p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spd~~~las~~~d 429 (1135)
.++ ++++++++.|-.++.|.|+|+.+....- ++-+. ..+..+.... ...-..+..+|+| .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p----~~~k~-----ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP----KIIKV-----IEPEEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC----EEEEE-----ECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc----eeeee-----echhhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 337 8999888889899999999987441100 00000 0001111111 1245567889999 66666554
Q ss_pred ------CeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEc-------------------CCCcEEEEE
Q 001159 430 ------HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWD 483 (1135)
Q Consensus 430 ------g~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~-------------------~d~~i~iwd 483 (1135)
|.|.++|..+.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred cCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 789999999987665332 11222 2234588899999 677764 478999999
Q ss_pred cCCCeeeeeecCC-C-CCeeEEEeeccCCccEEEEEE------cCCeEEEEeCcCCCce--eEe--cCC-----------
Q 001159 484 VVAGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSR--VDY--DAP----------- 540 (1135)
Q Consensus 484 ~~~~~~~~~~~~h-~-~~v~~i~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~--~~~--~~~----------- 540 (1135)
+.+++.+.++... . .....+.|..++++.+++.++ .+++|.+|..+.+... ..+ ...
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 9999888887643 1 233455553333446766665 5678888766542211 111 100
Q ss_pred -----CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC---CCeEEEEeecccC---------C----ceeEEEecCC
Q 001159 541 -----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES---EGAIKRTYSGFRK---------R----SLGVVQFDTT 599 (1135)
Q Consensus 541 -----~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~---------~----~v~~i~~s~~ 599 (1135)
......+.+|+||++|+++.. +.+.|.++|+. +.+.+..+..... . .-..+.++||
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred ccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 235678999999999998764 56789999985 3455555543210 0 2466899999
Q ss_pred CCEEEEEe
Q 001159 600 RNRFLAAG 607 (1135)
Q Consensus 600 ~~~l~~~~ 607 (1135)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-08 Score=107.77 Aligned_cols=265 Identities=12% Similarity=0.022 Sum_probs=171.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..+.++...++|. ++ .|+.+ |..+|. +++.+... ...........+. +..|.++
T Consensus 60 ~~~~~~~~~~~g~-l~-v~t~~--l~~~d~-~g~~~~~~-------------------~~~~~~~~~~~~~--~~~l~v~ 113 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IY-FGSDK--VYAINP-DGTEKWRF-------------------DTKKAIVSDFTIF--EDILYVT 113 (330)
T ss_dssp EEEECCEETTTTE-EC-CSSCE--EEEECC-CGGGGGGS-------------------CC-----CCEEEE--TTEEEEE
T ss_pred CcccceEEecCCc-EE-EecCc--EEEECC-CCcEEEEE-------------------ECCCCcccCceEE--CCEEEEE
Confidence 3457777778885 44 35544 888886 55543221 1111112222232 5567778
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
+.++.|..+|.. ++... ....+...+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...
T Consensus 114 t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 114 SMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp CTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred ecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 888999999988 55433 3333444566677777776 5667778999999988 88777766555566666654
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
+ ++. +..++ +.+..+| .+++...........+.++...++|...+... ++.|..+| .++..+..+...
T Consensus 186 ~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~-~~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 K--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAIN-PDGTEKWRFKTG 253 (330)
T ss_dssp T--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEEC-TTSCEEEEEECS
T ss_pred C--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEEC-CCCCEeEEeeCC
Confidence 3 334 44555 8889999 66666666665556678888888886655432 56688887 466666666644
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.. .+..+.+.+++ .|+.++.+|.|..+|. +++.+..+.... ..+.++...+++. |..++.+|.+.+.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 33 34455565555 5777888889999996 677777766543 2567788878876 55688999999877543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=0.00038 Score=82.55 Aligned_cols=490 Identities=9% Similarity=-0.014 Sum_probs=259.0
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE-eCCCeEEEEEeC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~-~~dg~i~iwd~~ 438 (1135)
.|+++ ..+.|+.-++.+....... ....-..+..|+|++.+..|..+ ..++.|..++++
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~------------------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAI------------------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEEC------------------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEE------------------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 35554 3568888898765321110 01123457899999976666555 457889999987
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s 518 (1135)
...... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.|.. ..|+-..
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~--G~lY~tD 141 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE--GFMYWTE 141 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT--TEEEEEE
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC--CeEEEeC
Confidence 643221 22222235678999887765 45566667899999976443222222334456899998864 3444443
Q ss_pred --cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEe
Q 001159 519 --IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596 (1135)
Q Consensus 519 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~ 596 (1135)
..+.|...+++........ ........+++++++..|+.+-. +.+.|...|+..... ..+..... ....+++
T Consensus 142 ~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav 215 (628)
T 4a0p_A 142 WGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQ 215 (628)
T ss_dssp CSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEE
T ss_pred CCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEE
Confidence 2567888887755443333 34557889999999888887753 467899999875433 33333222 3456776
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE-cCCCCEEEEEECCCcEEEEEcCCCchhhhhccccc
Q 001159 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 597 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 675 (1135)
.. +..+++-...+.|...|..+++....+..... ....+.. ++..+. + .+ ++.. ..+.
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~n------------~C~~-~ng~- 274 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-WN------------ECAS-SNGH- 274 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-CC------------TTTT-TGGG-
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-ce------------Eecc-CCCC-
Confidence 64 34444444678898889877776666653221 2233322 221110 0 00 0000 0000
Q ss_pred cccccCCCCCCCCCCcccccC-CCcccc-ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccC
Q 001159 676 MDKNRCPSEPISSKPLTINAL-GPASNV-SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIP 753 (1135)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~ 753 (1135)
+...++... |+..-. ..-+.+.++. .. ..+...+++.+....|+...+.
T Consensus 275 ------------C~~~C~~~~~~~~~C~C~~g~~l~~d~----------------~~-C~~~~~~Ll~s~~~~i~~i~l~ 325 (628)
T 4a0p_A 275 ------------CSHLCLAVPVGGFVCGCPAHYSLNADN----------------RT-CSAPTTFLLFSQKSAINRMVID 325 (628)
T ss_dssp ------------CSSEEEEETTTEEEEECSTTCEECTTS----------------SC-EECCSSEEEEEETTEEEEECCC
T ss_pred ------------cchhhhcCCCCCeeEEcCCCcEecccC----------------Cc-CccccceeeeeccceEEEEecc
Confidence 000011000 000000 0000000000 00 0111233444444455444443
Q ss_pred CcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceec
Q 001159 754 DISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 832 (1135)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
..... ...++. ..-..+ ..++|.+....|+.... .+.|+.+++..... ..++..
T Consensus 326 ~~~~~----~~~l~~-~~~~~~-~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~ 380 (628)
T 4a0p_A 326 EQQSP----DIILPI-HSLRNV-RAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVS 380 (628)
T ss_dssp TTCCC----CEECCC-TTCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC-
T ss_pred cccCc----eEEEEe-hhcCCc-eEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEc
Confidence 21110 011111 122345 78999987666665543 56666654321100 001100
Q ss_pred cCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCC--cE
Q 001159 833 DINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SV 907 (1135)
Q Consensus 833 ~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg--~v 907 (1135)
...+... ...+..+|+...++.|..++ .+.|.+.++. ++....+ .........+++.|..|.++.+-.... .|
T Consensus 381 ~~~~~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I 458 (628)
T 4a0p_A 381 SVPSQNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKI 458 (628)
T ss_dssp --------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEE
T ss_pred ccccccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeE
Confidence 0000001 34678999999888777665 5889999986 4444444 334567899999995555554433222 56
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEE-cCCCcEEEEeCCCCc
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWE 958 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iwd~~~~~ 958 (1135)
...+++...........-...++|++.++++.|..+ +..+.|...+++...
T Consensus 459 ~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 459 ERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 666665333222233334567899999987666655 456789999986543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.4e-06 Score=86.70 Aligned_cols=223 Identities=10% Similarity=0.029 Sum_probs=144.9
Q ss_pred cceEEEEEcCCCCeEEEE-eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
..+..++|++++..|..+ ..++.|..+++.+..... .+.........+++.+++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999977666555 457899999998654221 22222346789999998764 4556666789999997643
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
...............++++|.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 3222222222456888998754 34444443 468888887654333222233456789999999888877653
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
+.+.|.++|.........+.+.. ....++.. +..++.+. ..+.|.++|..+++.+..+..... .....+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecCc
Confidence 46789999987654443333322 33456654 45555544 668999999999999888864321 23578888887
Q ss_pred CC
Q 001159 644 GS 645 (1135)
Q Consensus 644 ~~ 645 (1135)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.1e-07 Score=108.23 Aligned_cols=191 Identities=11% Similarity=0.077 Sum_probs=126.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCC----------e-eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4666677889999999999998877543211 0 11122 2257888899999999999999988766
Q ss_pred cCCC----CcEEE-EEEcCCCCEEEEEecCC--CCCCeEEEEECCCCeEEEEeecccC----------------------
Q 001159 538 DAPG----NWCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1135)
Q Consensus 538 ~~~~----~~i~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1135)
.... ..+.+ ..+ .+..++++.... ..++.|+.+|..+|+.+..+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 111 133455543211 1258899999999999988863210
Q ss_pred --------CceeEEEecCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEeCCCCC-------CC
Q 001159 589 --------RSLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL-------PA 634 (1135)
Q Consensus 589 --------~~v~~i~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~ 634 (1135)
.....++++++...++.++.++ .|..+|..+++.+..++...+. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888998887766 3999999999999888753221 11
Q ss_pred cceEEEcCCCC---EEEEEECCCcEEEEEcCCCc
Q 001159 635 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 635 v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.....+..+|+ .++.++.+|.+.++|..+++
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 22222333665 68889999999999999994
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.6e-10 Score=123.16 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC
Q 001159 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 973 (1135)
Q Consensus 894 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 973 (1135)
++..|++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||.++++.+-.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~----- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP----- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-----
Confidence 456888999999999999999999988876 5666666777888888889999999999988875322111100
Q ss_pred CCCCc-eEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 974 PLVGE-TKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 974 ~~~~v-~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
..+ ...++..++ .+++ +.++.|+.||. +++.+..+... . ...++|++..+++++.|+.|+.||..+|
T Consensus 81 --~~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 --ELVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp --HHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSS
T ss_pred --cccccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEEEEEECCCC
Confidence 000 011112333 4455 67899999999 67776554332 1 2456678889999999999999999999
Q ss_pred eeeeeeCCceeccccccCCCCccEEEEecCC--CCCEEEEEecCCcEEEEecCCCccccCCC
Q 001159 1051 RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS--EPNQIALGMSDGAVHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~v~~W~~~~~~~~~~~~ 1110 (1135)
+.+-++..... . ...+.++ -...+++++.||.|+.||..+++..|...
T Consensus 151 ~~~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 151 ELRWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SCCCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CEEEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 87765542211 0 0111110 01467778999999999999999888643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-06 Score=104.74 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=72.8
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCc----------E-EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW----------C-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|..+|..+++.+..+...... + ..+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 57888888999999999998888776543221 0 11222 2456666653 789999999999999
Q ss_pred EEeecccCCceeEEEecC--CCCEEEEEeC------CCeEEEEECCCCceEEEEeC
Q 001159 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAGD------EFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..+..........+..+| .+..++++.. +|.|+.+|..+|+.+..+..
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 888753210000011111 1345555543 58999999999999988864
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-06 Score=88.22 Aligned_cols=205 Identities=9% Similarity=0.027 Sum_probs=132.7
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 919 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 919 (1135)
..+..+++++++..|..+. ++.|.++++.+......+.........++++|+++.+.++-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4567899999888777776 68999999987654433433335789999999334555555567899999987543222
Q ss_pred EecCcCCCeEEEEEcCCCCeEEEEcC---CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--e
Q 001159 920 KLKGHQNRITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 994 (1135)
Q Consensus 920 ~l~~h~~~i~~l~~s~d~~~l~s~~~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 994 (1135)
...........++++|++..|..+.. .+.|..++++.... . .+... + ......++++++++.|.++ .
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~--~~~~~-~----~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R--ILAQD-N----LGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E--EEECT-T----CSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E--EEEEC-C----CCCCcEEEEcCCCCEEEEEECC
Confidence 22222246789999997665554443 36788888765331 1 11111 1 1346789999998877764 4
Q ss_pred cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 995 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 995 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.+.|.++|..+.....+... ......+++. ++.++++....+.|.++|..+++.+.++..
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCEEEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 67899999954443333221 2234566654 344444444568999999999999888763
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-06 Score=89.99 Aligned_cols=212 Identities=11% Similarity=0.017 Sum_probs=143.5
Q ss_pred CceEEEEeecCCCEEEEEe---CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 842 ESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
.....++|++|+.+.++.+ +++|.++|+.+++.+..+.-.. .....++++. +++.++.-.++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcE
Confidence 3467899999876555544 4789999999999999876322 2334566653 45555555689999999999999
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
+.++..-... ...+++||+.|+.+..++.|.++|..+.+......+.. ++
T Consensus 99 ~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~---------------------------~~- 148 (266)
T 2iwa_A 99 IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY---------------------------NG- 148 (266)
T ss_dssp EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE---------------------------TT-
T ss_pred EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC---------------------------CC-
Confidence 9888632122 23456688877777778899999998866332211110 00
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccc---cccCCCCccE
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT---YAVSNTAHPL 1074 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1074 (1135)
+. -..+..+.|. +|+..+....++.|.+.|..+++.+.++......+. ........+.
T Consensus 149 --------~p----------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~n 209 (266)
T 2iwa_A 149 --------HR----------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLN 209 (266)
T ss_dssp --------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEE
T ss_pred --------cc----------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceE
Confidence 00 1235677777 776555555688999999999999999875422111 1011124557
Q ss_pred EEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1075 VIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1075 ~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.++|+|+...+++++...+.|++-++....
T Consensus 210 GIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 210 GIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 899999666788888899999999987643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.73 E-value=0.002 Score=79.46 Aligned_cols=572 Identities=12% Similarity=0.098 Sum_probs=299.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|+++.-..+|. +. .|+.+| +..||-..-+... . . .......|.++.-..+| .|-+
T Consensus 21 ~n~V~~I~qD~~G~-lW-igT~~G-L~ryDG~~~~~~~--------~-------~---~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IW-IGSNKG-LFSYDGYSTQQHF--------T-------Y---GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSC-EE-EEESSC-EEEECSSCEEECS--------C-------T---TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCC-EE-EEECCC-ccccCCCceEEEE--------c-------c---CCCCCceEEEEEEcCCC-cEEE
Confidence 35799999999996 33 355566 5556632211100 0 0 01123568888877766 4556
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec-----CCCCCe
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v 500 (1135)
|+.+| +..||..+..-.. ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66665 7899987743211 11112335777754 3553 3444444 6888897766543 221 123457
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecC----CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.++.... +|. |..|+.+ -+..++..+...... ... ....|.++...+++..|..+. ++-+..+|..
T Consensus 149 ~~i~~d~--~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETT
T ss_pred EEEEEcC--CCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCC
Confidence 7776543 334 4445554 466777655432211 111 122488888887777555554 2248889988
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CCCCcceEEEcCCCCEEEE
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~ 649 (1135)
+++... +.......|.++....+|...+ |+.+ -+.+++..+++.. .+.... ....|.++....+|.+-+
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 294 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL- 294 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence 776432 2221222588888887776555 4444 4788888765443 222110 113477777777776444
Q ss_pred EECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCC
Q 001159 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1135)
Q Consensus 650 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1135)
|+..| +.++..... .+......
T Consensus 295 GT~~G-l~~~~~~~~---~~~~~~~~------------------------------------------------------ 316 (758)
T 3ott_A 295 GTDYG-ISLSRYNSA---LQFIPISQ------------------------------------------------------ 316 (758)
T ss_dssp EESSS-EEEECCCC----CEEEEHHH------------------------------------------------------
T ss_pred EeCCc-ccccccCCc---eeEEeccc------------------------------------------------------
Confidence 55555 444322111 00000000
Q ss_pred CCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCC
Q 001159 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 809 (1135)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 809 (1135)
. ........| .++....+|. |-+++.+|.. .++......
T Consensus 317 ----------------------~--------------~~~~~~~~v-~~i~~D~~g~-lWiGt~~Gl~-~~~~~~~~~-- 355 (758)
T 3ott_A 317 ----------------------I--------------TGTGDGNQF-YSLFRDSKGF-YWFGGANGLI-RFTDPAGER-- 355 (758)
T ss_dssp ----------------------H--------------SCSCCCCBE-EEEEECTTCC-EEEEETTEEE-EESCTTSSC--
T ss_pred ----------------------C--------------CCCCCCceE-EEEEEcCCCC-EEEeeCCcce-eeccccccc--
Confidence 0 000011234 6777777777 4444455533 333211000
Q ss_pred CCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEe-C-----CCC
Q 001159 810 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-S-----PPP 883 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~-----h~~ 883 (1135)
.....+...... ..+ . ...|.++...++|++-+.. ++-|..+|..+++...... . ...
T Consensus 356 -------~~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (758)
T 3ott_A 356 -------HDAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTN 419 (758)
T ss_dssp -------CCCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSS
T ss_pred -------ceeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCc
Confidence 000001100000 000 1 4568899988888866544 6689999998875543221 1 124
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccc------eee--EEec---C-cCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD------EVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------~~~--~~l~---~-h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
.|.++...+ ++. |-.|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-+..
T Consensus 420 ~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 420 WTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEE
T ss_pred eEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEE
Confidence 588888776 554 445776666888886531 111 1111 1 1235899999999998874444455888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCC
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGL 1031 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~ 1031 (1135)
+|..+++... +. ..+ ......+.++....+|.+.+.+. +.+..|+........+....--...|.++... +|
T Consensus 498 ~d~~~~~~~~---~~-~~~-~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g- 569 (758)
T 3ott_A 498 INPRTREVTK---LF-ADE-LTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KN- 569 (758)
T ss_dssp EETTTTEEEE---EC-TTT-SCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TT-
T ss_pred EeCCCCceEE---ec-CCC-cCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CC-
Confidence 9987765221 11 111 00013567888888998887764 56888887433333332110013568888763 55
Q ss_pred EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1032 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.|..++.+| |..||..+.+... +. .+.. ... ...+...+| .|..|+.+|- ..++...
T Consensus 570 ~lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~----~~~--~~~~~~~~G-~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 570 SIWVSTTNG-LWIIDRKTMDARQ-QN----MTNK----RFT--SLLFDPKED-CVYLGGADGF-GISHSNL 626 (758)
T ss_dssp EEEEEESSC-EEEEETTTCCEEE-C------CCC----CCS--EEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred CEEEECCCC-eEEEcCCCceeEE-ec----CCCC----cee--eeEEECCCC-cEEEecCCce-EEEChhh
Confidence 466666555 7888988776542 11 1111 111 223333255 6777777774 5556554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-06 Score=98.18 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=71.0
Q ss_pred cEEEEEEc-CCeEEEEeC-cCCCceeEecCCCCc-----------EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 512 ~~l~s~s~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.|..+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 46666777 788888998 788877665443210 011222 2456666643 7889999999999
Q ss_pred EEEEeecccC---Ccee-EEEecCCCCEEEEEeC------CCeEEEEECCCCceEEEEeCC
Q 001159 579 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~~~---~~v~-~i~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..+..... ..+. .... .+..+++++. ++.|+.+|..+++.+..+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 9987764321 0111 1111 1345666654 799999999999999887643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-06 Score=86.28 Aligned_cols=203 Identities=13% Similarity=0.040 Sum_probs=132.3
Q ss_pred CCceEEEEeecCCCEEEEEe-CC--eEEEEECCCccEEEEEeCCCCCeE--EEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 841 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~h~~~v~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
......+.|+ ++.+..+++ +| .|+++|+++++.+..+.-.. ... .+++. ++++.+....++.+.+||..+.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccC
Confidence 4456789998 676656555 55 89999999999999886433 333 35554 3445454556899999999999
Q ss_pred eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec
Q 001159 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 995 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 995 (1135)
+.+.++.... .-.++ ++|++.|+.+..++.|.++|..+.+......+.. +
T Consensus 118 ~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~------------------~--------- 167 (262)
T 3nol_A 118 RQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA------------------H--------- 167 (262)
T ss_dssp CEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEE------------------T---------
T ss_pred cEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc------------------C---------
Confidence 9999887432 22344 4577777776667789999998876433211100 0
Q ss_pred CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceecccc--ccCCCCcc
Q 001159 996 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY--AVSNTAHP 1073 (1135)
Q Consensus 996 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 1073 (1135)
++. -..++.+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .......+
T Consensus 168 ---------g~~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 168 ---------GEE----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp ---------TEE----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred ---------Ccc----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 000 1234456665 7776665557889999999999999999876433321 11122345
Q ss_pred EEEEecCCCCCEEEEEecCCcEEE
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~ 1097 (1135)
-.++|+|+..++++||-.=-.++-
T Consensus 228 NGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCceEE
Confidence 689999966666667655444433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-05 Score=94.93 Aligned_cols=112 Identities=9% Similarity=-0.006 Sum_probs=72.5
Q ss_pred cEEEEEEc-CCeEEEEeC-cCCCceeEecCCCCc-----------EEEEEEcCCCCE----EEEEecCCCCCCeEEEEEC
Q 001159 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTR----LFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 512 ~~l~s~s~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~----l~~~~~~~~~~~~i~~wd~ 574 (1135)
..++.++. ++.|..+|. .+++.+..+...... ...++++|.+.. +++++. ++.|+.+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 46777777 888888998 788877766543221 123455443333 666653 788999999
Q ss_pred CCCeEEEEeecccC---Ccee-EEEecCCCCEEEEEe------CCCeEEEEECCCCceEEEEeCC
Q 001159 575 SEGAIKRTYSGFRK---RSLG-VVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~---~~v~-~i~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+|+.+........ ..+. ...+. + ..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 99999987754321 0111 11111 3 4566554 3799999999999999887643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=0.0041 Score=78.78 Aligned_cols=605 Identities=9% Similarity=0.029 Sum_probs=305.2
Q ss_pred eeEEeecCCCCeeEEEEecCC----CeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQ----QTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g----~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+.++..-++|..++.-... ..++++++ .+|.+++..-.-+-.... . . .+. .-..+
T Consensus 366 ~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~-~----------~-----~l~-gv~~i 428 (1158)
T 3ei3_A 366 VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA-S----------I-----DLP-GIKGL 428 (1158)
T ss_dssp EEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE-E----------E-----CCC-SCCEE
T ss_pred EeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE-e----------e-----cCC-CccEE
Confidence 456777777899999886432 34555543 567888776432211110 0 0 022 22456
Q ss_pred EEEEEc---CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeeccc---CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 412 NRCVWG---PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 412 ~~v~~s---pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~---~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+.+... ....+|+.+..+.+ .|+.+... .+... ...+.. ..+.+-.+ .++ .++=.. ...|++.+..
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l-~~~---~ivQVt-~~~Irli~~~ 500 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNV-AHQ---QLIQIT-SASVRLVSQE 500 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEE-TTT---EEEEEE-SSCEEEEESS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEc-CCC---eEEEEe-cCEEEEEECC
Confidence 666543 24568877777666 56665432 22211 111111 11211111 222 233222 2356777766
Q ss_pred CCeeeeeecCC-CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcCC------CCEEE
Q 001159 486 AGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSAD------GTRLF 557 (1135)
Q Consensus 486 ~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~------~~~l~ 557 (1135)
.+..+..+... ...|...+.+. ..++.++ .+.+.++.++.++... ....-...|.|+++.+. +++++
T Consensus 501 ~~~~~~~w~~p~~~~I~~As~n~----~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~a 575 (1158)
T 3ei3_A 501 PKALVSEWKEPQAKNISVASCNS----SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCA 575 (1158)
T ss_dssp SCCEEEEECCTTCCCCCEEEECS----SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEE
T ss_pred CCeEEEEEECCCCCEEEEEEeCC----CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEE
Confidence 55566666533 33566666432 3555554 6788888776543211 11112457999999763 36777
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec--CCCCEEEEEeCCCeEEEEEC--CCCceEEEEeCCCCCC
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLP 633 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s--~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~ 633 (1135)
+|.. .+++++++++.+.+.+....-.......++.+. ....++..|-.||.+..+.+ .+++....-...-+..
T Consensus 576 Vg~~---~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~ 652 (1158)
T 3ei3_A 576 IGLW---TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQ 652 (1158)
T ss_dssp EEET---TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSS
T ss_pred EEEC---CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCC
Confidence 7763 378999999998776654433221123333332 23357788889998866554 4455443311111122
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 713 (1135)
++.-..+...+..-+.+..+.-..++..+.. -.+..+....
T Consensus 653 pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~~~~-------------------------------------- 693 (1158)
T 3ei3_A 653 PTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVNLKE-------------------------------------- 693 (1158)
T ss_dssp CCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBSSSC--------------------------------------
T ss_pred ceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccChHH--------------------------------------
Confidence 4544445444444444444555555543321 1111110000
Q ss_pred CCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc
Q 001159 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~ 793 (1135)
+.....| +....+++ ++...++.+++..+++.. .-..+.+.+. ..+ ..++++|+.+.++++..
T Consensus 694 -----v~~~~~F---~se~~~~g--~v~~~~~~LrI~~i~~~~-~~~~~~ipL~-----~Tp-rri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 694 -----VNYMCPL---NSDGYPDS--LALANNSTLTIGTIDEIQ-KLHIRTVPLY-----ESP-RKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp -----CCEEEEE---CCSSSTTE--EEEECSSCEEEEEECCSS-SEEEEEEECS-----SEE-EEEEEEGGGTEEEEEEE
T ss_pred -----hceEecc---CcccCCCc--EEEEcCCceEEEEecccC-CeeEEEEeCC-----CCc-eEEEEcCCCCEEEEEEE
Confidence 0000011 01112222 223334557777765432 1122223222 344 88999999887776654
Q ss_pred cceeeeEEecc-----------------------------ccCCCCCcccccccCeeecCCCCcceec-cCCCCCCCCCc
Q 001159 794 NAVHKLWKWQR-----------------------------TERNPSGKATANVAPQLWQPPSGTLMTN-DINESKPTEES 843 (1135)
Q Consensus 794 dg~i~iw~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~ 843 (1135)
+... ++... ......+.......+++.|+.+.+.+.. .+.. ...
T Consensus 757 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~----nE~ 830 (1158)
T 3ei3_A 757 RIEV--QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----NEY 830 (1158)
T ss_dssp EEEE--ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT----TEE
T ss_pred eccc--cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC----Ccc
Confidence 4311 11100 0000012222345678888887765433 3333 455
Q ss_pred eEEEEe---ecC-CCEEEEEe-----------CCeEEEEECCCccEEEEEe-CCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 844 AACIAL---SKN-DSYVMSAS-----------GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 844 i~~l~~---s~d-g~~la~~~-----------dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
+.+++. ..+ ..++++|. .|.|.+|++..+++....+ ...+.|++++-- +|++||.. ...|
T Consensus 831 ~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l 906 (1158)
T 3ei3_A 831 ALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTV 906 (1158)
T ss_dssp EEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEE
T ss_pred eEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEE
Confidence 566553 322 46888874 1569999987554332221 246778888755 35555433 4789
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
++|++...+.+..-..+-..|..+.....+.+++.|..-..|.+...+..+..-........ ...++++.|-.++
T Consensus 907 ~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~-----~~~vta~~~ld~~ 981 (1158)
T 3ei3_A 907 RLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFN-----PNWMSAVEILDDD 981 (1158)
T ss_dssp EEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCS-----CBCEEEEEEEETT
T ss_pred EEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecc-----cccEEEEEEEccC
Confidence 99999866544311111122333333335778888887777777654432211111111111 1567888887777
Q ss_pred cEEEEEecCeEEEEecCCc--------eeeccCCCCCCCCCEEEEEE---eeC---------CCEEEEEeCCCeEEEEEC
Q 001159 988 THLLVVHESQISVYDSKLE--------CSRSWSPKDALPAPISSAIY---SCD---------GLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 988 ~~l~~~~d~~v~vwd~~~~--------~~~~~~~~~~h~~~i~~~~~---s~d---------~~~l~~~~~dg~I~vwd~ 1047 (1135)
.++++-.++.+.+...... .+...... .....|+++.- .+. ...++.++.+|.|.+.-.
T Consensus 982 t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~f-hlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 982 NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLF-HLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEE-ECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEE-eCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 6666556788888876221 11111000 01456777652 222 234677788998877643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-05 Score=91.79 Aligned_cols=374 Identities=10% Similarity=0.004 Sum_probs=202.8
Q ss_pred EEEEEcC-CCcEEEEEc-CCCeeeeeecCCCC-Ce----------eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee
Q 001159 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-PV----------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 469 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~-~v----------~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 535 (1135)
.++.++. ++.|.-+|. .+|+.+.++..... .+ ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4566666 889999999 89998877653221 00 11222 22578888999999999999998887
Q ss_pred EecCCCC----cEE-EEEEcCCCCEEEEEecCC--CCCCeEEEEECCCCeEEEEeecccCC-------------------
Q 001159 536 DYDAPGN----WCT-MMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 589 (1135)
Q Consensus 536 ~~~~~~~----~i~-~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 589 (1135)
....... .+. .... .+ ..++++.... ..++.|+.+|..+|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 111 1111 13 3555544210 12678999999999999887643210
Q ss_pred ------------------ceeEEEecCCCCEEEEEeCC----------------CeEEEEECCCCceEEEEeCCCCC---
Q 001159 590 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGL--- 632 (1135)
Q Consensus 590 ------------------~v~~i~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 632 (1135)
....++++++...++.+..+ +.|..+|..+++.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00235667776777776532 36999999999999888653221
Q ss_pred -CCcce---EEEcCCCC---EEEEEECCCcEEEEEcCCCchhhhhccccc--cccccCCCCCCCCCCcccccCCCccccc
Q 001159 633 -PASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRA--MDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 633 -~~v~~---~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 703 (1135)
..+.. +....+|+ .++.++.+|.+.++|..+++.+. ...-.. .....+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w-~~~~~~~~~w~~~~---------------------- 354 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV-AEKVDPAVNVFKKV---------------------- 354 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE-EEESSTTCCSEEEE----------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe-eecccCCccccccc----------------------
Confidence 01111 22224674 67788889999999999984322 211100 000000
Q ss_pred cccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec
Q 001159 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 783 (1135)
.+. .++.+.... +... .........+.......- ..++++|
T Consensus 355 ---d~~-------------------------~g~p~~~~~------~~~~----~~~~~~~~~P~~~Gg~~w-~~~a~dp 395 (571)
T 2ad6_A 355 ---DLK-------------------------TGTPVRDPE------FATR----MDHKGTNICPSAMGFHNQ-GVDSYDP 395 (571)
T ss_dssp ---CTT-------------------------TCSEEECGG------GCCC----TTCCEEEESSCTTCSSCS-CBCEEET
T ss_pred ---ccc-------------------------CCceecccc------cCCC----CCCCceEECCCCccccCC-CCceECC
Confidence 000 000000000 0000 000001111111111112 4578899
Q ss_pred CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCe
Q 001159 784 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK 863 (1135)
Q Consensus 784 dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~ 863 (1135)
+...+++...+....++.... ....+.. . -.....+..+|.+. + ...+|.
T Consensus 396 ~~g~~yv~~~~~~~~~~~~~~------------------~~~~g~~---------~-~g~~~~~~~~~~~~-~-~~~~g~ 445 (571)
T 2ad6_A 396 ESRTLYAGLNHICMDWEPFML------------------PYRAGQF---------F-VGATLAMYPGPNGP-T-KKEMGQ 445 (571)
T ss_dssp TTTEEEEEEECEEEEEEECCC------------------CCCTTSC---------C-CCEEEEEEECTTST-T-SCCCEE
T ss_pred CCCEEEEEchhcccccccccc------------------ccccCCc---------c-ccccceeccCcccc-C-CCCCCe
Confidence 988888877765544442211 0001110 0 11111223333322 0 012578
Q ss_pred EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC-eEEEEEcCCCCeEEE
Q 001159 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVS 942 (1135)
Q Consensus 864 i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s 942 (1135)
|..||+.+++.+.++.... .+....+.. .+.++++++.||.|+.||..+|+.+..+...... -..+.+..+|+.++.
T Consensus 446 l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 446 IRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 9999999999887775332 222233333 3456777999999999999999999888643221 122445577775554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-06 Score=85.48 Aligned_cols=200 Identities=12% Similarity=0.035 Sum_probs=133.1
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCe--EEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ -. ... ..+++. ++++.+....++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 44557888873 44444445 789999999999998887 22 233 335554 345555566789999999999999
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
+.++..- ..-++++ +|++.|+.+..++.|.++|.++.+......+.. +
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~----------- 176 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------R----------- 176 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------T-----------
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------C-----------
Confidence 9998743 3334454 578888877778899999999876433211110 0
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceecccc---ccCCCCccE
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY---AVSNTAHPL 1074 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1074 (1135)
+.. -..++.+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. ........-
T Consensus 177 -------g~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 177 -------GQP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp -------TEE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred -------Ccc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 000 1234556665 7775655556889999999999999999876433221 111223456
Q ss_pred EEEecCCCCCEEEEEecCCcE
Q 001159 1075 VIAPHPSEPNQIALGMSDGAV 1095 (1135)
Q Consensus 1075 ~~~~~~~~~~~l~sg~~dg~v 1095 (1135)
.++|+|+..++++||-.=-.+
T Consensus 239 GIA~dp~~~rlfVTGK~Wp~~ 259 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGKLWPRL 259 (268)
T ss_dssp EEEECTTTCCEEEEETTCSEE
T ss_pred EEEEcCCCCEEEEeCCCCCce
Confidence 899999777788887654443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-05 Score=91.96 Aligned_cols=192 Identities=11% Similarity=0.045 Sum_probs=119.7
Q ss_pred EEEEcCCCcEEEEEcCCCeeeeeecCCCCCe---------eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC
Q 001159 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 540 (1135)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4444443349999999999987775432210 11122 1257888899999999999999988765543
Q ss_pred CC----cEE-EEEEcC---CCC-EEEEEecCC--CCCCeEEEEECCCCeEEEEeecccC---------------------
Q 001159 541 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 588 (1135)
Q Consensus 541 ~~----~i~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1135)
.. .+. ...+.. +++ .++++.... ..++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 455543211 1367899999999999887653210
Q ss_pred -------------------CceeEEEecCCCCEEEEEeC--------------------C----CeEEEEECCCCceEEE
Q 001159 589 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 589 -------------------~~v~~i~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1135)
..-...+++|+...++.+.. | +.|..+|..+++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123566777778887653 2 5899999999999988
Q ss_pred EeCCCCC----CCcc-eEEEc---CCCC---EEEEEECCCcEEEEEcCCCc
Q 001159 626 VDADGGL----PASP-RLRFN---KEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 626 ~~~~~~~----~~v~-~~~~~---~~~~---~l~~~~~dg~i~iwd~~~~~ 665 (1135)
++...+. ..+. -+.+. .+|+ .++.++.+|.+.++|..+++
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 8653221 0111 12222 4674 78889999999999999994
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-06 Score=84.24 Aligned_cols=197 Identities=8% Similarity=0.008 Sum_probs=137.6
Q ss_pred CEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 455 GVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
....++|++|+. ++++.+ .++.|.+.|+.+++.+.++.-.. .....+++. ++ ...++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~--Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~-~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAENDT--LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NE-KLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECSTTE--EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCCCe--EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CC-EEEEEEecCCEEEEEECCCC
Confidence 367899999864 455544 36899999999999988865222 222345554 22 44455556899999999988
Q ss_pred CceeEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC-C---ceeEEEecCCCCEEEEE
Q 001159 532 GSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-R---SLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 532 ~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~---~v~~i~~s~~~~~l~~~ 606 (1135)
+.+..+... .. ...+++||+.++++. +.+.|.++|..+.+.+..+..... . .++.+.|. ++..++..
T Consensus 97 ~v~~~i~~g~~~---g~glt~Dg~~l~vs~----gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 97 SNIKNFTHQMKD---GWGLATDGKILYGSD----GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp EEEEEEECCSSS---CCEEEECSSSEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred cEEEEEECCCCC---eEEEEECCCEEEEEC----CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence 877777544 22 233566888888653 377999999999998888774321 1 25567777 66444444
Q ss_pred eCCCeEEEEECCCCceEEEEeCCC-----------CCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCC
Q 001159 607 GDEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~ 664 (1135)
..++.|.+.|..+++.+..+...+ .....+.++|+|+++.++ ++...+.+.+.++...
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 467899999999999999987531 112458999999887555 5556788888887544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-05 Score=91.06 Aligned_cols=166 Identities=12% Similarity=0.145 Sum_probs=102.8
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEEcccceeeEEecCcCC----------CeEEEEEc-CCC--
Q 001159 887 FLAFHPQDNNIIAIGMED----------------SSVQIYNVRVDEVKTKLKGHQN----------RITGLAFS-PTL-- 937 (1135)
Q Consensus 887 ~l~~sp~~~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~h~~----------~i~~l~~s-~d~-- 937 (1135)
.+++.+ ...+++.++.+ +.|..+|..+|+.+..++.... ++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55667767655 3799999999999877653211 121 2222 567
Q ss_pred -CeEEEEcCCCcEEEEeCCCCceeceeeeec----------CCCCC---------------------CCCCCceEEEECC
Q 001159 938 -NALVSSGADAQLCMWSIDKWEKLKSRFIQA----------PAGRQ---------------------SPLVGETKVQFHN 985 (1135)
Q Consensus 938 -~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~v~~~~~s~ 985 (1135)
+.++.++.+|.+.+.|..+++.+-...... ..+.. .....-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999998654332211 00000 0000112467788
Q ss_pred CCcEEEEE----------------------------------------ecCeEEEEec-CCceeeccCCCCCCCCCEEEE
Q 001159 986 DQTHLLVV----------------------------------------HESQISVYDS-KLECSRSWSPKDALPAPISSA 1024 (1135)
Q Consensus 986 dg~~l~~~----------------------------------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~ 1024 (1135)
+.+++++. ..+.|..||+ +++.+...... .++.+-
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g 478 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGG 478 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSB
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCc
Confidence 77766552 1256777777 66655443211 111111
Q ss_pred EEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 1025 IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 1025 ~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.+...+.+++.++.||.++.||.++|+.+-++..
T Consensus 479 ~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 479 TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 2334677788899999999999999999987753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-06 Score=101.20 Aligned_cols=248 Identities=12% Similarity=0.053 Sum_probs=137.0
Q ss_pred CeeEEEEe-cCCCeEEEEEeccc----eEEEEEcCCc-cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 348 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 348 ~V~~v~~s-p~g~~lla~g~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
.+...+|| |||++++++.+.+| .|+++|+.++ +.+.. . + ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 67889999 99996665555444 4999999988 63211 0 1 11234689999999
Q ss_pred eEEEEeCC-----CeEEEEEeCCCCceeeeeEee-cccCCEEEEEEecCCCeEEEEEEc-CCCcEEEEEcCCCe-ee--e
Q 001159 422 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 491 (1135)
Q Consensus 422 ~las~~~d-----g~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 491 (1135)
.|+....+ ..|.++++.++..... ..+. .+......+.|+|||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 98888765 2588888877542211 1222 233456788999999963333322 34578889988752 12 3
Q ss_pred ee-cCCCCCeeEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCceeE-ecCCCC--cEEEEEEcCCCCEEEEEecCC
Q 001159 492 TF-EGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 492 ~~-~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
.+ ........++.|+.. +.+++....+ ..|..+|+.+...... +..+.. .+..+.+ ++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~g--~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHGT--SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEETT--TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeeeC--CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 33 334455566654432 1344444443 3566667654222222 222333 4455555 4566665442 2
Q ss_pred CCCCeEEEEEC-------CCCeEEEEeecccCCceeEEEe----cCCCCE-EEEEeC---CCeEEEEECCCCce
Q 001159 564 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRNR-FLAAGD---EFQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~i~~----s~~~~~-l~~~~~---dg~i~iwd~~~~~~ 622 (1135)
++...|+++|+ .+++..+.+.......+..+.+ ++++.. +++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34556788886 3443133333222112233322 345543 444332 24677888877663
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.58 E-value=0.0048 Score=76.05 Aligned_cols=529 Identities=10% Similarity=0.043 Sum_probs=272.9
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.++.-..+|. |. .|+.+| +..||..+.+.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~-lW-igT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LY-MGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-EE-EEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-EE-EEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34689988888885 44 455554 78899876532210 0011234777654 344 5666
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEe-e-cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCC----CC
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEI-D-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH----EA 498 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l-~-~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h----~~ 498 (1135)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -|..+|..+++.... .... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 58888987653221 1000 0 1134688888877776 333 4444 477888776654321 1111 22
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|.++.... ++..|..|+. +-+..+|..+.+...........|.++....+|...+.. . . -+.+++..++.
T Consensus 192 ~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSC
T ss_pred eeEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCc
Confidence 477776544 3355555554 457778876543322212223468888888888766643 1 2 38888887665
Q ss_pred EEEEeec------ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe-----CCCCCCCcceEEEcCCCCEE
Q 001159 579 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----ADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l 647 (1135)
....... -....|.++..+.+|.. ..|+..| +.++.... ....+. .......|.++.-..+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 11225888888877764 4455556 54443322 112221 01112357777777777655
Q ss_pred EEEECCCcEEEEEcCCCch-hhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 648 AVTTSDNGIKILANSDGVR-LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+ |+.+ .+..++..++.. .+..+.
T Consensus 339 i-Gt~~-Gl~~~~~~~~~~~~~~~~~------------------------------------------------------ 362 (758)
T 3ott_A 339 F-GGAN-GLIRFTDPAGERHDAIWYR------------------------------------------------------ 362 (758)
T ss_dssp E-EETT-EEEEESCTTSSCCCCEEEC------------------------------------------------------
T ss_pred E-eeCC-cceeecccccccceeEEec------------------------------------------------------
Confidence 5 4554 455555443210 000000
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
.... ........| .++.-..+|. |-+++. +-+..|+.....
T Consensus 363 -------------------------~~~~-----------~~~l~~~~v-~~i~~d~~g~-lWigt~-~GL~~~~~~~~~ 403 (758)
T 3ott_A 363 -------------------------MGDK-----------TYPLSHNRI-RHIYEDKEQQ-LWIATD-GSINRYDYATRQ 403 (758)
T ss_dssp -------------------------TTCS-----------SSCCSCSCE-EEEEECTTSC-EEEEET-TEEEEEETTTTE
T ss_pred -------------------------cCCc-----------CCCCCCCce-EEEEECCCCC-EEEEeC-CcHhhcCcCCCc
Confidence 0000 000011234 6777777776 444443 346666543211
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCc-----cEE---EEE
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TMF 878 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~-----~~~---~~~ 878 (1135)
. ..+.... ...... ...|.++...++|++.+....+-|.++|..+. ... ..+
T Consensus 404 ~------------~~~~~~~-------~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 463 (758)
T 3ott_A 404 F------------IHYNIVD-------NTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNY 463 (758)
T ss_dssp E------------EEEEEEC-------CC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEE
T ss_pred E------------EEeecCC-------CcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccc
Confidence 1 0000000 000001 45688888888887666444667888886531 111 122
Q ss_pred e---C-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC---cCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 879 M---S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 879 ~---~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
. + ....|.++...+ ++.+-+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..
T Consensus 464 ~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~ 540 (758)
T 3ott_A 464 SVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMR 540 (758)
T ss_dssp CGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEE
T ss_pred ccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEE
Confidence 1 1 223588999888 666655333344588899887764432111 12468889888888877654 445 888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEe-eCC
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDG 1030 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s-~d~ 1030 (1135)
++..++.... .. ..+-. ...|.++... +|.+.+++ ++.+..+|........+... ...+....+. ++|
T Consensus 541 ~~~~~~~~~~---~~-~~gl~--~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G 609 (758)
T 3ott_A 541 INPKDESQQS---IS-FGSFS--NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKED 609 (758)
T ss_dssp ECC--CCCCB---CC-CCC-----CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C---CCCCSEEEEETTTT
T ss_pred EecCCCceEE---ec-ccCCC--ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC---CCceeeeEEECCCC
Confidence 8877654211 11 11111 1346777664 66655555 45588888844333333221 1223344444 466
Q ss_pred CEEEEEeCCCeEEEEECC
Q 001159 1031 LLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1031 ~~l~~~~~dg~I~vwd~~ 1048 (1135)
. |+.|+.+|.+ .++.+
T Consensus 610 ~-l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 610 C-VYLGGADGFG-ISHSN 625 (758)
T ss_dssp E-EEEECBSEEE-EEEC-
T ss_pred c-EEEecCCceE-EEChh
Confidence 5 6667777754 55554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-06 Score=84.37 Aligned_cols=194 Identities=8% Similarity=0.049 Sum_probs=128.2
Q ss_pred EEEEEecCCcceeEecccc--eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
..+.|+ ++..+.+.+.+| .|+.+ |+.++++...... ........+.+++.
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~v----------------------D~~Tgkv~~~~~l-----~~~~FgeGit~~g~ 97 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKV----------------------DIESGKTLQQIEL-----GKRYFGEGISDWKD 97 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEE----------------------CTTTCCEEEEEEC-----CTTCCEEEEEEETT
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEE----------------------ECCCCcEEEEEec-----CCccceeEEEEeCC
Confidence 788888 666555555544 67666 5555554443221 22222333333556
Q ss_pred EEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CC
Q 001159 855 YVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NR 927 (1135)
Q Consensus 855 ~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~ 927 (1135)
.|.... ++.+.++|..+++.+.++.... ....+++ +++.|+....+++|.++|..+.+.+..+.-.. ..
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~ 173 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE 173 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence 666665 7999999999999999997533 2234445 55666666667889999999988887765321 33
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC----CCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 928 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 928 i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
+..+.|. +|+..|..-.+..|.+.|..+++......+..+... .....-.+.+||+|+++.|.+++..-=++|.+
T Consensus 174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 174 LNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred cceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 5568886 788777777788999999999997665544322211 11113458899999999988877665566655
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-05 Score=88.20 Aligned_cols=237 Identities=13% Similarity=0.043 Sum_probs=147.0
Q ss_pred ceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeC-C-------------------CCCeEEEEEecCCCcEEEEE
Q 001159 843 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-P-------------------PPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-h-------------------~~~v~~l~~sp~~~~~lasg 901 (1135)
...+++++++|+++.++. ++.|..||..+++.. .+.. . ...+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 346788999999666666 789999998765543 2221 0 135788999973444 5555
Q ss_pred eCCCcEEEEEcccceeeEEec----C-cCCCeEEEEEcC-CCCeEEEEcC-----------------CCcEEEEeCCCCc
Q 001159 902 MEDSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWE 958 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~i~~l~~s~-d~~~l~s~~~-----------------D~~i~iwd~~~~~ 958 (1135)
...+.|..+|..+++. ..+. + .......+++.+ +|.++++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688888776542 2222 1 123478899999 9988877543 3668888887665
Q ss_pred eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecCCc---eeeccCCCCCCCCCEEEEEEeeCCCEE
Q 001159 959 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE---CSRSWSPKDALPAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~---~~~~~~~~~~h~~~i~~~~~s~d~~~l 1033 (1135)
... ..... .....++|+|||++|.++ ..+.|.+|++.+. ....+... .+ ...++++++|++.
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFW 243 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEE
Confidence 221 11111 234689999999977664 4688999998432 11111111 23 6789999999976
Q ss_pred EEEeC----------CCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1034 YAGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1034 ~~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
++... .+.|..+|.. |+.+..+.... +.. ...+.++++. +++++++....+.|..+++...
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~~--~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PFA--GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TTT--TSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred EEecCcccccccCCCccEEEEECCC-CCEEEEEECCC----CCc--cccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 66544 4678888875 77776654321 100 1223344442 5667777777889999998654
Q ss_pred c
Q 001159 1104 E 1104 (1135)
Q Consensus 1104 ~ 1104 (1135)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-05 Score=87.52 Aligned_cols=250 Identities=9% Similarity=0.026 Sum_probs=145.9
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCC------CCCCCCceEEEEee
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE------SKPTEESAACIALS 850 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~i~~l~~s 850 (1135)
.++++.++|+.+.+...++.|..|+...... ..|.............+ ... ...+..++++
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~p~gi~~~ 88 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPL-CGRTYDISYN 88 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHH-HCCEEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhcccc-CCCCceEEEc
Confidence 6788999998788877788888775432111 00100000000000000 000 2347889999
Q ss_pred c-CCCEEEEEeCCeEEEEECCCccEEEEEeC-----CCCCeEEEEEecCCCcEEEEEeC-----------------CCcE
Q 001159 851 K-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME-----------------DSSV 907 (1135)
Q Consensus 851 ~-dg~~la~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~lasg~~-----------------dg~v 907 (1135)
+ +|+++++...+.|..+|..+++. ..+.. .......+++.+.+|++.++-.. ++.|
T Consensus 89 ~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 89 LQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred CCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 8 66554443456688899876543 22221 12346889999823455554322 3678
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEE-EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
..||..+++...... .......|+|++|+++|. +-...+.|.++++.....-....+.... . ...+++.++
T Consensus 168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d~~ 239 (322)
T 2fp8_A 168 IKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRNAD 239 (322)
T ss_dssp EEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEECTT
T ss_pred EEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEECCC
Confidence 899987776433222 223456899999998554 4466788999998853211111111111 2 567999999
Q ss_pred CcEEEEE-e----------cCeEEEEecCCceeeccCCCCCC-CCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 987 QTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 987 g~~l~~~-~----------d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
|+++++. . .+.|..+|..++.+..+....+. ...++++++ .+++++++...++.|.++++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 9977774 3 36688888877766655443221 234666766 5677666666788999999864
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00019 Score=84.49 Aligned_cols=204 Identities=10% Similarity=-0.025 Sum_probs=122.7
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCC-------EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~-------v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+..+.+++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|.-+|..+|+.+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 3445555554448888998887654221 1110000 012223 233 577778899999999999998876
Q ss_pred ecCCCC----Cee-EEEeecc-CCcc-EEEEEE------cCCeEEEEeCcCCCceeEecCCCCcE---------------
Q 001159 493 FEGHEA----PVY-SVCPHHK-ESIQ-FIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWC--------------- 544 (1135)
Q Consensus 493 ~~~h~~----~v~-~i~~~~~-~~~~-~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~i--------------- 544 (1135)
...... .+. +..+... .+|+ .++.++ .++.|..+|..+++.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 643221 111 1111111 1222 566655 37899999999988776543321000
Q ss_pred --------------------------EEEEEcCCCCEEEEEecCC----------CC----------CCeEEEEECCCCe
Q 001159 545 --------------------------TMMAYSADGTRLFSCGTSK----------EG----------ESHLVEWNESEGA 578 (1135)
Q Consensus 545 --------------------------~~~~~s~~~~~l~~~~~~~----------~~----------~~~i~~wd~~~~~ 578 (1135)
..++++|+...++.+..+. .+ .+.|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 1356677777777665310 11 2689999999999
Q ss_pred EEEEeecc-cC--------CceeEEEec-CCCC---EEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 579 IKRTYSGF-RK--------RSLGVVQFD-TTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~-~~--------~~v~~i~~s-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..++.. ++ .++. +... .+|+ .++.++.+|.++++|..+++.+......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 99988642 11 0111 2221 4664 6778999999999999999999887654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-05 Score=78.99 Aligned_cols=207 Identities=13% Similarity=0.075 Sum_probs=135.5
Q ss_pred CCceEEEEeecCCCEEEEEe-C--CeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001159 841 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
......+.|+. +.+..+.+ + ..|+++|+.+++.+..+.-.... -..+++. ++++......++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 55667899986 55555554 3 48999999999999988644322 2345554 34555556678999999999999
Q ss_pred eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 917 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 917 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
.+.++.... .-.+++ +|++.|+.+..++.|.++|..+.+......+.. +
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~---------------------------~- 145 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA---------------------------G- 145 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE---------------------------T-
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc---------------------------C-
Confidence 999987432 334554 577777766678889999999876433211110 0
Q ss_pred eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccc---cCCCCcc
Q 001159 997 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA---VSNTAHP 1073 (1135)
Q Consensus 997 ~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 1073 (1135)
+.. -..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+... ......+
T Consensus 146 --------g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 146 --------GRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp --------TEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred --------Ccc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 000 1234455554 77766655567899999999999999998765433321 1122345
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
-.++++|...++++||-.=-.++--.+
T Consensus 207 NGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 689999976677777766555444333
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.9e-05 Score=79.69 Aligned_cols=242 Identities=10% Similarity=-0.000 Sum_probs=145.0
Q ss_pred CCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceE
Q 001159 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 333 d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
+..+.+.+..+........++|+|+|+ ++++-..++.|..||..++.. . .+ .......
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~-~-----~~---------------~~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQ-I-----HA---------------TVEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEE-E-----EE---------------ECSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCceE-E-----EE---------------eCCCCce
Confidence 345566777776556788999999998 777766788999999775321 1 01 1123588
Q ss_pred EEEEcCCCCeEEEEeCC-C-eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-
Q 001159 413 RCVWGPDGLMLGVAFSK-H-IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 489 (1135)
Q Consensus 413 ~v~~spd~~~las~~~d-g-~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~- 489 (1135)
.++++++|+++++.... + .|..+|..+++.. ....+ ........++..+++. .+++-..++.|.++|..+++.
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976655433 2 4666777766532 22122 1222344555555554 556666688999999776531
Q ss_pred eeee---------cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 490 QYTF---------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 490 ~~~~---------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+... ...-...+.+ ++++ +.++++-...+.|..|+++.... ...+. .......++++++|++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEE
Confidence 2110 0111233445 5543 13455556678999999875211 11111 112345688999998655
Q ss_pred EEecCCCCCCeEEEEECCCCeEEE--EeecccCCceeEEEec---CCCCEEEEEeCCC
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDEF 610 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~i~~s---~~~~~l~~~~~dg 610 (1135)
+.. ..+.|.++|.. |+... .+.... ....+++|. ++++.|+.++..+
T Consensus 228 a~~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 228 ATH----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECB----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EeC----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCCC
Confidence 543 25679999975 65533 222221 257889998 8888777765443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.2e-06 Score=82.27 Aligned_cols=193 Identities=7% Similarity=-0.072 Sum_probs=126.9
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..+.|+ ++...++.+.+|.|+.+ |+.++++....+.. ......+++ +++.|
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~i----------------------D~~Tgkv~~~~l~~----~~FgeGit~--~g~~L 108 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQL----------------------SLESAQPVWMERLG----NIFAEGLAS--DGERL 108 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEC----------------------CSSCSSCSEEEECT----TCCEEEEEE--CSSCE
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEE----------------------ECCCCcEEeEECCC----CcceeEEEE--eCCEE
Confidence 678887 35555666667787776 44555554443111 222233444 45555
Q ss_pred EEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CCeE
Q 001159 857 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NRIT 929 (1135)
Q Consensus 857 a~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~i~ 929 (1135)
.... ++.+.+||..+++.+.++.... .-..++ + +++.|+.+..+++|.++|..+.+.+..+.-.. ..++
T Consensus 109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp EEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 5555 8999999999999999998532 223444 4 56677777778999999999998887765322 2456
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC---C--CCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---G--RQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---~--~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
.|.|. +|+..|..-.+..|.+.|..+++.+....+..+. . ......-.+.+|++|+++.|++++..-=++|.+
T Consensus 185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 78887 8887777777889999999999977665443211 0 111113458899999988887766554445544
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-05 Score=94.88 Aligned_cols=279 Identities=9% Similarity=0.006 Sum_probs=156.0
Q ss_pred eEEEEec-CCCeEEEEEeccc-----------eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 350 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 350 ~~v~~sp-~g~~lla~g~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.++++.| +|+ +++.|+.++ .+.+||..+++..... . ....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~------------~----~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT------------V----TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE------------E----EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc------------c----cCCCCCCccccccCC
Confidence 3677888 776 777776432 6889998877543210 0 011233344567888
Q ss_pred CCCCeEEEEeC-CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CC-----CcEEEEEcCCCeee
Q 001159 418 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRKQ 490 (1135)
Q Consensus 418 pd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 490 (1135)
++|+++++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++-.
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 5589999998753221 11221111 123455667888 777787 44 57999999887643
Q ss_pred eee----cC-CCCCeeEEEeeccCCccEEEEEEcC---------CeEEEEeCcCCCceeEecCC---------CCcEEEE
Q 001159 491 YTF----EG-HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAP---------GNWCTMM 547 (1135)
Q Consensus 491 ~~~----~~-h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~---------~~~i~~~ 547 (1135)
..- .. ....-. ..+. .++..++.++.+ ..+..||..+.......... ...-.++
T Consensus 328 ~~~~~~~~p~~~~~~~-~~~~--~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQ-GLYR--SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EETTSCSGGGCCCCTT-GGGT--TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eCCCcccccccccccc-ceee--cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 320 00 000000 0111 122344445444 45678888766533322111 1122444
Q ss_pred EEcC-CCCEEEEEecCCCC----CC---eEEEEECCCCeEEEEe--ecccCCceeEEEecCCCCEEEEEeCC--------
Q 001159 548 AYSA-DGTRLFSCGTSKEG----ES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE-------- 609 (1135)
Q Consensus 548 ~~s~-~~~~l~~~~~~~~~----~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~i~~s~~~~~l~~~~~d-------- 609 (1135)
.|.. +++.++.|+.+... .. .|.+||..+....... .......-.+.+..++++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4543 66666776642110 11 6888998877654433 22222123445667899999998754
Q ss_pred ---CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 610 ---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 610 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
..+.+||..+.+....-..........+..+.+++++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987654332111111112234566789999999985
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00011 Score=79.34 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=138.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCC-cEEEEEcCC
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 486 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~-~i~iwd~~~ 486 (1135)
.....++|+++|+++++-..++.|..||..+. ... .+ ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45778999999997777768899999987753 221 11 2234688999999998 444443 333 477778777
Q ss_pred CeeeeeecC-CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-e-------c--CCCCcEEEEEEcCCCCE
Q 001159 487 GRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 487 ~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~~~~~ 555 (1135)
++....... .......++..+ ++..+++...++.|..+|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 765432221 122234444432 224444444688888888764321111 0 0 111234455 788888
Q ss_pred EEEEecCCCCCCeEEEEECCC-CeE--EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
|+.+.. ..+.|..+++.. ++. ...+... . ....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999874 332 1222111 1 34558899999877776677899999976 5553322222222
Q ss_pred CCcceEEEc---CCCCEEEEEECC
Q 001159 633 PASPRLRFN---KEGSLLAVTTSD 653 (1135)
Q Consensus 633 ~~v~~~~~~---~~~~~l~~~~~d 653 (1135)
....+++|. |+++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888777776654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-05 Score=76.09 Aligned_cols=194 Identities=10% Similarity=0.064 Sum_probs=127.3
Q ss_pred EEEEEecCCcceeEeccc--ceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTNSGLSLLALASN--AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
..+.|+. +....+.+.. +.|+.+| +.++++...... ........+..++.
T Consensus 24 qGL~~~~-~~LyestG~~g~S~v~~vD----------------------~~tgkv~~~~~l-----~~~~fgeGi~~~~~ 75 (243)
T 3mbr_X 24 EGLFYLR-GHLYESTGETGRSSVRKVD----------------------LETGRILQRAEV-----PPPYFGAGIVAWRD 75 (243)
T ss_dssp EEEEEET-TEEEEEECCTTSCEEEEEE----------------------TTTCCEEEEEEC-----CTTCCEEEEEEETT
T ss_pred ccEEEEC-CEEEEECCCCCCceEEEEE----------------------CCCCCEEEEEeC-----CCCcceeEEEEeCC
Confidence 7889886 5544555544 3677664 455554433211 12222233333456
Q ss_pred EEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CC
Q 001159 855 YVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NR 927 (1135)
Q Consensus 855 ~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~ 927 (1135)
.|.... ++.+.++|..+.+.+.++...... ..+ .+ ++..|+++..++.|.++|..+.+.+.++.-.. ..
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--ee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 565555 899999999999999999854322 334 45 45566666678899999999998887765322 24
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCC-----CCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 928 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 928 i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
++.|.+. +|+..+..-.+..|.+.|..+++.+....+..+.... ....-.+.+|++|+++.|.+++..-=++|.
T Consensus 152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~ 230 (243)
T 3mbr_X 152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE 230 (243)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence 5677776 7777777767889999999999977765554332211 111345789999999888887666556665
Q ss_pred c
Q 001159 1003 S 1003 (1135)
Q Consensus 1003 ~ 1003 (1135)
+
T Consensus 231 v 231 (243)
T 3mbr_X 231 I 231 (243)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00029 Score=77.36 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=149.9
Q ss_pred ceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec
Q 001159 843 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345666656 445666666678888987665544443 344588999998455555555567889999988665444343
Q ss_pred CcCCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ec-CeE
Q 001159 923 GHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HE-SQI 998 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d-~~v 998 (1135)
.......++++.+.+ .++++-...+.|.+.+++..... ..+. .+ . .....++++|.+..|..+ .. +.|
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~--~l~~--~~-l---~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLLW--QS-L---EKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEC--TT-C---SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE--EEEe--CC-C---CCcceEEEecCcCeEEEeccCCCCEE
Confidence 333456889999754 55566667788999998764321 1111 11 1 345899999977777664 33 678
Q ss_pred EEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEE
Q 001159 999 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1077 (1135)
Q Consensus 999 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1135)
..++.++.....+.... ......+++++++..|+.+ ...+.|..++++.......+... ...+.+++
T Consensus 185 ~r~~~dG~~~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gia 252 (349)
T 3v64_C 185 EASSMDGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAIT 252 (349)
T ss_dssp EEEETTSCSCEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEE
T ss_pred EEEeCCCCCcEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEE
Confidence 88888665444433211 3456899999877665554 55678999998754322222211 13455566
Q ss_pred ecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1078 PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1078 ~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.. ++.++++-...+.|...+..+++
T Consensus 253 v~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 253 VF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EE--CCEEEEecCCCCeEEEEEccCCC
Confidence 63 44667776677888888855554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00029 Score=76.24 Aligned_cols=208 Identities=10% Similarity=-0.021 Sum_probs=132.5
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCC---ccEEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMT---FKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~---~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
...+..++|++++..|..++ ++.|..+++.+ +..... +...-.....+++++.++++.++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 45678999999887777776 58999999876 122222 3323345688999873555555556678999999875
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC--CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
......+........++++.|++..|..+... +.|...+++..... .+.... ......++++++++.|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~---~~~~~~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTEN-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---EEECSS-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE---EEEECC-----CCCceEEEEeccCCEEEE
Confidence 44333333344568999999876655555433 67888887653311 111111 134679999998887777
Q ss_pred E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 993 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
+ ..+.|..+|..+.....+............+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 4678999999654443332211112345678885 46666677778899999988887665553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00089 Score=73.40 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=151.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
+..+|.+..+++ .++++ ....|+..++....... +......+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677766744 35543 24567777776543211 11123347899999866666555
Q ss_pred -eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEe
Q 001159 427 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 -~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1135)
...+.|..+++.+..... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 457889999988754222 22222234578999986664 4566666789999997654333333333456788999
Q ss_pred eccCCccEEEEEEcC-CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 506 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+|.. +.++++-... +.|..++++...........-.....+++++++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 3455555555 78888887754433333333456789999998888887643 46789999986433322232
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45667773 34444555567788888866666655554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00061 Score=75.92 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=152.0
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE-
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~- 426 (1135)
.-.|.+..+.+ .++++ ....|+..++.++.... +......+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 34566666644 34443 24578888877653221 11233457899999866655554
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
...+.|..+++.+..... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 457789999988754221 12222234567899886664 45566667788888876443333333334567889998
Q ss_pred ccCCccEEEEEEcC-CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 507 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
|.. +.++++-... +.|..++++...........-.....++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 764 2444554444 78888888755444444444456889999998888887643 467899999864333222322
Q ss_pred ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
... ....+++. .+..+++-...+.|..++..+++.+..+..
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 45667773 344555555778888888777776666653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0018 Score=70.33 Aligned_cols=278 Identities=9% Similarity=0.014 Sum_probs=151.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...+.+|.|.+++. ++++| ..|.| +...+.|+. |..... ........+.+|.|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE-
Confidence 34799999988876 56655 45654 333444431 111000 0112345688999986 44444
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCCCCCeeEEE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVC 504 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~ 504 (1135)
++.++.|.. ..+.++..........+...+..+.+.+++. .++.+. ++.|.. ....|+.-.. ...+...+..++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEE
Confidence 456664433 4444554442211112345678888887775 555554 554432 1123432222 234556788888
Q ss_pred eeccCCccEEEEEEcCCeE-EEEeCcCCCcee-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 505 PHHKESIQFIFSTAIDGKI-KAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i-~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.+. +.+++.+ .+|.+ +-+|-. +..-. .-......+..+++.++++.++++. ++.+++.+...|+.-..
T Consensus 170 ~~~~--~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 170 RSPS--GEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGE 240 (327)
T ss_dssp ECTT--SCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECC
T ss_pred EcCC--CcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEe
Confidence 8774 3556555 44444 333321 11111 1223445788899999988776552 56676664332433222
Q ss_pred eecc---cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001159 583 YSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 583 ~~~~---~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 658 (1135)
+... ....+..+.+.+++..++++ .+|.| ++..+.++.-..+... .....++++.|.+++ .+++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 2211 11247888898877665555 56766 4556666665555422 112357889887555 4666778888776
Q ss_pred EE
Q 001159 659 LA 660 (1135)
Q Consensus 659 wd 660 (1135)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 65
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00015 Score=74.14 Aligned_cols=202 Identities=11% Similarity=0.090 Sum_probs=131.9
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -....-.+++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 46799999999877666544 6889999998 888888742 235688899998 777766655678899998875432
Q ss_pred ---eEEec------CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC---Cceeceeeeec--CCCCCCCCCCceEEEE
Q 001159 918 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQA--PAGRQSPLVGETKVQF 983 (1135)
Q Consensus 918 ---~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~--~~~~~~~~~~v~~~~~ 983 (1135)
+.... .......+|+|+|+++.|.++.......+|.++. ...+. .... ..+ .........+++
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~--i~~~~~~~~-~~~~~d~S~l~~ 180 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH--ISKDKALQR-QFTLDDVSGAEF 180 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE--EEECHHHHH-TCCSSCCCEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee--eecchhhcc-ccccCCceeEEE
Confidence 22221 1234568999999998777777655556665541 11011 1100 000 001145689999
Q ss_pred CCCCcEEEE-E-ecCeEEEEecCCceeeccCCCCCC------CCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 984 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 984 s~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|....+.+ + ..+.+.++|.+++.+..+....+. -..-..|+|.++|+++++ ++-+.+++|.-.
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred cCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 998877666 4 457788899977765554433221 124578999999985554 677777777644
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00029 Score=78.56 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=148.1
Q ss_pred EEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 845 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
.|.+..+ ..+|+.+....|+.+++.+......+. .......++|++.++.++++-...+.|+.+++..+.....+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3445445 445666666789999988765544443 34468899999845555555556788999998876544444333
Q ss_pred CCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe--c-CeEEE
Q 001159 925 QNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--E-SQISV 1000 (1135)
Q Consensus 925 ~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d-~~v~v 1000 (1135)
.....+|++.+.+ .++++-...+.|.+.+++..... ..+. .+ . .....++++|.+..|+.+. . +.|..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--~l~~--~~-l---~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLLW--QS-L---EKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--EEEC--SS-C---SCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--Eeec--CC-C---CCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 3456789998754 45556666778888888754311 1111 11 1 3468999999887777753 3 67888
Q ss_pred EecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1001 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 wd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
++..+.....+.... ......++|+|++..|+.+ +..+.|..++++.......+... ...+.+++..
T Consensus 230 ~~~dG~~~~~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~----------~~~P~giav~ 297 (386)
T 3v65_B 230 SSMDGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITVF 297 (386)
T ss_dssp EETTSCSCEEEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS----------CSSEEEEEEE
T ss_pred EeCCCCCcEEEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC----------CCCceEEEEE
Confidence 888555443332211 3456899999876665544 55678999998754322222211 1345566663
Q ss_pred CCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1080 PSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1080 ~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
++.++++-...+.|..++..+++
T Consensus 298 --~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 298 --EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCC
T ss_pred --CCEEEEeeCCCCeEEEEECCCCc
Confidence 44677777777888888865554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00076 Score=68.99 Aligned_cols=201 Identities=10% Similarity=0.086 Sum_probs=129.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999988788888889999999987 66544311 122 245778888999987777
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEee------cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---CCeeeeeec--
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEID------AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFE-- 494 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~------~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~-- 494 (1135)
.-.++.+.++++.....+....... ..+.....++|+|+++. |.++.......+|.+. .+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999987765322111111 23445789999999985 3334333334444443 111122221
Q ss_pred -----CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---------CcEEEEEEcCCCCEEEEEe
Q 001159 495 -----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 495 -----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~ 560 (1135)
.+...+.+++++|.. +.+++.....+.+.++|.+. +.+..+.... .....++|.++|+..++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 134467899999975 46777777888899998764 3444333332 26689999999985555 3
Q ss_pred cCCCCCCeEEEEEC
Q 001159 561 TSKEGESHLVEWNE 574 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~ 574 (1135)
. .+.++.+..
T Consensus 242 E----~n~~y~f~~ 251 (255)
T 3qqz_A 242 E----PNRFYRFTP 251 (255)
T ss_dssp T----TTEEEEEEC
T ss_pred C----CceEEEEEe
Confidence 2 445666653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00018 Score=81.37 Aligned_cols=247 Identities=12% Similarity=0.062 Sum_probs=145.6
Q ss_pred ceEEEEeec-CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC-CC----cEEEEEcccc
Q 001159 843 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 915 (1135)
Q Consensus 843 ~i~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 915 (1135)
....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|+++.. ++ .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456789998 466666666 5889999998766543 333556688999999 7775555554 22 3444443 33
Q ss_pred eee--EEecCcCCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 916 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 916 ~~~--~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
... ..+. ......+++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 2232 133467889999 77777777778899999998765311 1111111 23578999999996666
Q ss_pred E--ecCeEEEEecCC--cee---eccCC---CCCC---------CCCEE-EEEEe--------eCCCEEEEEeCCCeEEE
Q 001159 993 V--HESQISVYDSKL--ECS---RSWSP---KDAL---------PAPIS-SAIYS--------CDGLLVYAGFCDGAIGV 1044 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~--~~~---~~~~~---~~~h---------~~~i~-~~~~s--------~d~~~l~~~~~dg~I~v 1044 (1135)
+ ..+.|..++..+ ..+ ..+.. ..+. -..-. .++.. ++|.++++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 578899988732 111 11110 0000 11123 45553 34666666667788999
Q ss_pred EECCCceeeeeeCCce-ecc---c---cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1045 FDAETLRFRCRIGPSA-YIP---T---YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1045 wd~~~~~~~~~~~~~~-~~~---~---~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
++ .+|.......... ... . .....-..|..++++|+++.++++-...+.|+..++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 4565443221100 000 0 0001113578899988556677776667788887764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00024 Score=80.39 Aligned_cols=248 Identities=8% Similarity=0.007 Sum_probs=147.8
Q ss_pred ceEEEEeecC--CCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEcccc
Q 001159 843 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 915 (1135)
Q Consensus 843 ~i~~l~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 915 (1135)
....++++|+ +..|..+. .+.|+.+|..+++.... .........++|++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 45565555 58899999987766544 33455689999999 77744443311 1 2333333222
Q ss_pred ee-eEEecCcCCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 916 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 916 ~~-~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
.. ...+. .......++++| +|.++++-..++.|+.++..++...... ..... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01222 234467789999 7777777667888999998876532211 11111 1 123479999999966664
Q ss_pred --ecCeEEEEecC--Ccee---eccCC---CCC---------CCCCEEEEEE---------eeCCCEEEEEeCCCeEEEE
Q 001159 994 --HESQISVYDSK--LECS---RSWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 994 --~d~~v~vwd~~--~~~~---~~~~~---~~~---------h~~~i~~~~~---------s~d~~~l~~~~~dg~I~vw 1045 (1135)
..+.|+.++.. ...+ ..+.. ..+ .-.....+++ .++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 46789888763 1211 11110 000 1223567999 7778777777778899999
Q ss_pred ECCCceeeeeeCCcee-----cccc---ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRFRCRIGPSAY-----IPTY---AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
+. +|... ++..... ...+ ....-..|..++++|.+++++++-...+.|+..+++
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 56443 3322110 0000 001124577899996577777777777888888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00099 Score=74.55 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=136.0
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCc----cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
...+..++|++.+..|..++ .+.|+.+++... .....+.........+++.+.++++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 56788999999877777776 688999998752 222333334456789999974455555555678999999876
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEc-C-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-A-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
......+........+|++.|.+.+|..+. . .+.|...+++...... .+.. + ......++++++++.|+.
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C----CCceEEEEEEeCCCEEEE
Confidence 544444444445689999999766555544 2 3678888887643211 1111 1 134689999998888877
Q ss_pred E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 993 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
+ ..+.|..+|+++.....+...........++++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 467899999865544443322112334567777 344566666777889999988887776654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0029 Score=68.30 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=143.3
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---Ceeee-eecCCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQY-TFEGHEA 498 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~~~~h~~ 498 (1135)
|+.+.. ..|+..|+.+..... .+ .....+..++|.+++.. ++++-..++.|..+++.. +.... .+...-.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 444433 458888988765332 22 23456889999987764 556666788999999875 12222 2322224
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
....+++.+.. +.+.++-...+.|.+.+++.................++++|.+..|+.+.. ...+.|...++. |.
T Consensus 78 ~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 78 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-GV 153 (316)
T ss_dssp CCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-SC
T ss_pred CcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-CC
Confidence 55788887643 255566677889999998754444344434457789999998777776542 113678888875 44
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
....+....-.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33333222222567899999877777655 5679999999754333333322222245677775 355555556678888
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 8887666
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0003 Score=86.29 Aligned_cols=201 Identities=5% Similarity=-0.040 Sum_probs=114.6
Q ss_pred cCCCc-ceEEEEEc-CCCCeEEEEeC-CC----eEEEEEeCCC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 405 NDAAI-SVNRCVWG-PDGLMLGVAFS-KH----IVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 405 ~~h~~-~V~~v~~s-pd~~~las~~~-dg----~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
.+|.- .+...+|| |||++||.+.. +| +|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEEC
Confidence 34553 78899999 99999987643 22 5999999998 53221 1211 1346899999985 3333333
Q ss_pred -----CcEEEEEcCCCeee--eeec-CCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCC-ce--eEec-CCC
Q 001159 477 -----KMIKVWDVVAGRKQ--YTFE-GHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDYD-APG 541 (1135)
Q Consensus 477 -----~~i~iwd~~~~~~~--~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~~-~~~ 541 (1135)
..|+++++.++... ..+. ........+.|+|++ ++|+..+. ...|.++|+.+.. .. ..+. ...
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 36888888776422 2332 223345677887754 66665552 3468888887753 22 3332 233
Q ss_pred CcEEEEEEcCCCCEEEEEecCC-CCCCeEEEEECCCC-eEEE-EeecccCCceeEEEecCCCCEE-EEEeCCCe--EEEE
Q 001159 542 NWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQ--IKFW 615 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~--i~iw 615 (1135)
....++.|+. |..|+..+... .+...|..+|+.++ .... .+....+..+..+.+. ++.| ++...++. |+++
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 3444554433 66666554321 24568888898753 3222 2332222234555554 4444 45566775 4555
Q ss_pred EC
Q 001159 616 DM 617 (1135)
Q Consensus 616 d~ 617 (1135)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.005 Score=66.74 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=112.8
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEE-EEc--cccee
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDEV 917 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~~ 917 (1135)
..+..+++.++++.++++.+|.|.. ..+.++.-... ..+...+..+++.| ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 4567788888888777776665422 12223322222 34556789999999 788877664 454444 332 23333
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
+. ......+..+++++++..++ ++.+|.+++++.+.++.-. .+... .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 23456789999999987665 4567877777533232111 11111 000013478899999999888888887
Q ss_pred EEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 001159 998 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 998 v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~ 1047 (1135)
|. +.. .+..-........+...+.++.|.++++ +++++.+|.|.-++-
T Consensus 272 i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 73 333 3333222221111234678899987666 455568898776653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.19 E-value=8e-05 Score=90.06 Aligned_cols=239 Identities=11% Similarity=0.025 Sum_probs=127.4
Q ss_pred ceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEe-CC-----CcEEEEEcc
Q 001159 843 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGM-ED-----SSVQIYNVR 913 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~-~d-----g~v~iwd~~ 913 (1135)
...++++..+|+++++|+ ++.+.+||..+.+-...-..+..+ -.++++.+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344678889999999998 468999998876433221112222 24556667 788999998 44 579999998
Q ss_pred cceeeEEe----cCcCCCeEEEEEcCCCCeEEEEcCCC---------cEEEEeCCCCceeceeeeecCC-CCCCCCCCce
Q 001159 914 VDEVKTKL----KGHQNRITGLAFSPTLNALVSSGADA---------QLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGET 979 (1135)
Q Consensus 914 ~~~~~~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~---------~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~ 979 (1135)
+++-...- ......-...++..+++.++.++.|+ .+..||..+............. +.......-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 76532210 00000000012234556656665444 4678888776532211111000 0000001224
Q ss_pred EEEECC-CCcEEEEEe-cC-----------eEEEEecCCceeeccC-CCCCCCCCEEEEEEeeCCCEEEEEeCC------
Q 001159 980 KVQFHN-DQTHLLVVH-ES-----------QISVYDSKLECSRSWS-PKDALPAPISSAIYSCDGLLVYAGFCD------ 1039 (1135)
Q Consensus 980 ~~~~s~-dg~~l~~~~-d~-----------~v~vwd~~~~~~~~~~-~~~~h~~~i~~~~~s~d~~~l~~~~~d------ 1039 (1135)
.+.|.. +++.++.++ ++ .|.+||.....-.... ........-.+++..++|+++++|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 455543 677777743 21 5778887332222221 010112222355667899999999865
Q ss_pred -----CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEec
Q 001159 1040 -----GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1040 -----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 1091 (1135)
..+.+||..+++.... .. .+. .. ...-++...| |+++++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~-~~---~~~---~R-~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQ-NP---NSI---VR-VYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEEC-CC---CSS---CC-CTTEEEEECT-TSCEEEEECC
T ss_pred CCCcccceEEEcCCCCceeec-CC---CCC---cc-ccccHhhcCC-CcEEEecCCC
Confidence 4689999988764431 11 111 11 1222334456 7889999885
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00033 Score=79.16 Aligned_cols=244 Identities=11% Similarity=0.089 Sum_probs=137.2
Q ss_pred EEEEEecC--CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTNS--GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~d--g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
..+++.|+ +..|.++...+.|+.++ +.++.+... ... ......++++++|+
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id----------------------~~~g~v~~~-~~~----~~~P~giavd~dG~ 194 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVD----------------------FVNQYVDIK-TTN----IGQCADVNFTLNGD 194 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEE----------------------TTTTEEEEE-CCC----CSCEEEEEECTTCC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEE----------------------CCCCEEEEe-ecC----CCCccEEEECCCCC
Confidence 78899984 33355554435565554 333333221 111 45688999999999
Q ss_pred EEEEEeCC----e-EEEEECCCccE-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-c-CcCC
Q 001159 855 YVMSASGG----K-VSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-K-GHQN 926 (1135)
Q Consensus 855 ~la~~~dg----~-i~vwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~-~h~~ 926 (1135)
++++...+ . +...+...+.. ...+. .......++++|+++.+.++-..++.|+.++..++.....+ . +...
T Consensus 195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 44443322 2 33333322211 11121 23345678899855666555556788999998877653332 2 1122
Q ss_pred CeEEEEEcCCCC-eEEEEcCCCcEEEEeCCC--CceeceeeeecC---CCCC------CCCCCceEEEE---------CC
Q 001159 927 RITGLAFSPTLN-ALVSSGADAQLCMWSIDK--WEKLKSRFIQAP---AGRQ------SPLVGETKVQF---------HN 985 (1135)
Q Consensus 927 ~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~--~~~~~~~~~~~~---~~~~------~~~~~v~~~~~---------s~ 985 (1135)
.-..|+|+|+++ ++++-...+.|..++.+. +.......+... .+.. ........+++ .+
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 235799999998 555556678899988763 221100111110 0100 00123567999 77
Q ss_pred CCcEEEE-EecCeEEEEecCCceeeccCCC--------------CCCCCCEEEEEEe-eCCCEEEEEeCCCeEEEEECC
Q 001159 986 DQTHLLV-VHESQISVYDSKLECSRSWSPK--------------DALPAPISSAIYS-CDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 986 dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~--------------~~h~~~i~~~~~s-~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|.++++ ..++.|+.++.++......-.. ...-.....++++ ++|.++++=..++.|+.++++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7777766 4678899998755332211100 0012346789999 677766666677888888764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00085 Score=75.86 Aligned_cols=243 Identities=9% Similarity=0.046 Sum_probs=136.9
Q ss_pred EEEEEec-CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~-dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
..++++| ++..|.+....+.|+.+++. ++.+... ... ......++++++|++
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~----------------------~~~v~~~-~~~----~~~P~~ia~d~~G~~ 192 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFE----------------------KEYVSTV-YSG----LSKVRTICWTHEADS 192 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETT----------------------TTEEEEE-ECC----CSCEEEEEECTTSSE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECC----------------------CCEEEEE-ecC----CCCcceEEEeCCCCE
Confidence 7889997 45556666554666666432 2222111 111 556789999999996
Q ss_pred EEEEe--CC----eEEEEECCCccEE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-CcCC
Q 001159 856 VMSAS--GG----KVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQN 926 (1135)
Q Consensus 856 la~~~--dg----~i~vwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~ 926 (1135)
|.++. ++ .+.+++.. +... ..+. .......++++|+++.++++-..++.|+.++..++....... +...
T Consensus 193 lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTRE-SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEGG-GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeCC-Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 66665 22 24444433 3221 2232 123457788999556666666677899999998766422222 1223
Q ss_pred CeEEEEEcCCCC-eEEEEcCCCcEEEEeCCCC--ceeceeeeecC---CCCCC------CCCCce-EEEEC--------C
Q 001159 927 RITGLAFSPTLN-ALVSSGADAQLCMWSIDKW--EKLKSRFIQAP---AGRQS------PLVGET-KVQFH--------N 985 (1135)
Q Consensus 927 ~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~--~~~~~~~~~~~---~~~~~------~~~~v~-~~~~s--------~ 985 (1135)
....|+|+|+|+ ++++-...+.|..++.+.. +......+... .+... ...... .++.. +
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~ 350 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD 350 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence 478999999999 5555567788999877642 11000111111 01000 001223 45553 4
Q ss_pred CCcEEEE-EecCeEEEEecCCceeeccCC------C--C------CCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEECC
Q 001159 986 DQTHLLV-VHESQISVYDSKLECSRSWSP------K--D------ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 986 dg~~l~~-~~d~~v~vwd~~~~~~~~~~~------~--~------~h~~~i~~~~~s~d-~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|.+.++ ...+.|+.++.++......-. . + ..-.....++++++ +.++++-..+..|+.++++
T Consensus 351 ~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 351 EYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4666555 457789888865533222110 0 0 01225789999995 6666665667788888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.09 E-value=0.005 Score=68.78 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=146.2
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC----eeeeeecCCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1135)
+|+.+ ....|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888887654322 2334567889999987764 4555566788999997652 2222333344
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567788887643 256666667889999998765554455444556889999998777776532 12467888887643
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
.........-. ....+++++++..|+.+. ..+.|..+|++..................++++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33222222222 567899998887777764 5678999998765544444432222344567773 33455555667788
Q ss_pred EEEEcCCC
Q 001159 657 KILANSDG 664 (1135)
Q Consensus 657 ~iwd~~~~ 664 (1135)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887666
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0013 Score=70.71 Aligned_cols=205 Identities=9% Similarity=0.026 Sum_probs=133.5
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCccEE-EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 918 (1135)
..+..++|++.+..|...+ .+.|..+++.+.... ..+...-.....+++.+.++.+.++-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 4567899999777777666 688999998876322 2222233456789998745566666566789999998754333
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEc--CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--e
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 994 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 994 (1135)
..+........++++.|.+..|..+. ..+.|...+++..... ..+.. + ......++++++++.|..+ .
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~~--~----l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--IIINS--E----IYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE--EEECS--S----CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE--EEEEC--C----CCCccEEEEeccCCEEEEEECC
Confidence 33334455689999998766555554 3567888887653311 11111 1 1345799999988877775 5
Q ss_pred cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 995 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 995 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
.+.|..+|+.+.....+... .......+++. .+.++++-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCSCEEEECS--CCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCceEEEecC--CCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 67899999855444333221 13445677875 34566666678899999998888766654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0018 Score=73.07 Aligned_cols=253 Identities=7% Similarity=-0.017 Sum_probs=148.8
Q ss_pred ceEEEEeec-CCCEEEEEe--CCeEEEEECCCccEEEEEeCC---CCCeEEEEE-------ecCCCcEEEEEeCCC----
Q 001159 843 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 905 (1135)
Q Consensus 843 ~i~~l~~s~-dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h---~~~v~~l~~-------sp~~~~~lasg~~dg---- 905 (1135)
....|+|+| ++..|.++. .+.|++.|++++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555554 367999999887765544332 235899999 99 777566565543
Q ss_pred ---cEEEEEccc-ceee-----EEecCcCCCeEEEEEcCC-CCeEEEEcCCCcEEEEeCC-------CCce------e--
Q 001159 906 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 960 (1135)
Q Consensus 906 ---~v~iwd~~~-~~~~-----~~l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iwd~~-------~~~~------~-- 960 (1135)
.|.+++... ++.. ..+.. .....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12221 123567889994 5666677788889999998 4442 0
Q ss_pred --ceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecCC--cee---eccCC---CCCC---------CC
Q 001159 961 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKL--ECS---RSWSP---KDAL---------PA 1019 (1135)
Q Consensus 961 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~---~~~~~---~~~h---------~~ 1019 (1135)
.........+ .....++|+|+|++|.++ ....|+.++..+ ..+ ..+.. ..++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011111111 235789999999965554 577888876622 211 11110 0110 12
Q ss_pred CEE-EEEEe-------eCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee------------cc--ccccCCCCccEEEE
Q 001159 1020 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY------------IP--TYAVSNTAHPLVIA 1077 (1135)
Q Consensus 1020 ~i~-~~~~s-------~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~ 1077 (1135)
... .++.. ++|.++++=..+.+|+.++ .+|. +.++.+... .. ......-..|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 234 45554 5667777777788999999 4563 444432210 00 00011224577888
Q ss_pred ecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1078 PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1078 ~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+++++++++++=...+.|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 888446777777777789999886544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.97 E-value=0.01 Score=63.69 Aligned_cols=237 Identities=10% Similarity=0.024 Sum_probs=143.8
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE-EEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la-s~~~dg~i~iwd~~~ 439 (1135)
||++. ...|+..++.+...... . +......+.+++|.+.+..|. +-...+.|..+++.+
T Consensus 7 ll~~~--~~~I~~i~l~~~~~~~~--~----------------~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 7 LLYAN--RRDLRLVDATNGKENAT--I----------------VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp EEEEC--EEEEEEEETTCTTSCCE--E----------------EEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred EEEEc--cCeEEEEECCCCceEEE--E----------------EecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 44433 56899999876531110 0 111223567899998655554 445578899999887
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA- 518 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s- 518 (1135)
+..... .+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.|.. ..|+.+.
T Consensus 67 ~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~ 141 (318)
T 3sov_A 67 TESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDW 141 (318)
T ss_dssp SSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEEC
T ss_pred CCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEec
Confidence 532111 12222235678999876664 45566667899999976443222233344567889998764 3444444
Q ss_pred -cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec
Q 001159 519 -IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 519 -~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s 597 (1135)
..+.|...+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+... ....+++.
T Consensus 142 ~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~ 217 (318)
T 3sov_A 142 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLF 217 (318)
T ss_dssp SSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEe
Confidence 3578888887654433333333456789999998888887643 467899999864332222222222 45567765
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 598 TTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 598 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
. +..+++-...+.|..++..+++....+.
T Consensus 218 ~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 218 E-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp T-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred C-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 3 3445555567888888887777666554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0035 Score=70.66 Aligned_cols=253 Identities=11% Similarity=0.068 Sum_probs=141.9
Q ss_pred EEEEEec-CCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEe-----
Q 001159 777 VRLIYTN-SGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL----- 849 (1135)
Q Consensus 777 ~~~~~s~-dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~----- 849 (1135)
..++|.| +...|+++.. .+.|++.|+ .++.+....-.+... ......++|
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~-~~~p~~ia~~~~~~ 198 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIP-TNRIRSIAFNKKIE 198 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSS-CSBEEEEEECCCBT
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccc-cCCCcEEEEeeccc
Confidence 7899998 3554555544 355555543 333322211111001 346889999
Q ss_pred --ecCCCEEEEEe-CC-------eEEEEECCC-ccEE-----EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 850 --SKNDSYVMSAS-GG-------KVSLFNMMT-FKVM-----TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 850 --s~dg~~la~~~-dg-------~i~vwd~~~-~~~~-----~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
+++|++|.++. .+ .|.+++... +... ..+.. ......++++|+++.++++-..++.|+.+|+.
T Consensus 199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 99999777776 32 266676443 2221 12221 12345788999666666667778899999997
Q ss_pred -------ccee-----------eEE-ec-CcCCCeEEEEEcCCCCe-EEEEcCCCcEEEEeCCCCc-eec--eeeeec--
Q 001159 914 -------VDEV-----------KTK-LK-GHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWE-KLK--SRFIQA-- 967 (1135)
Q Consensus 914 -------~~~~-----------~~~-l~-~h~~~i~~l~~s~d~~~-l~s~~~D~~i~iwd~~~~~-~~~--~~~~~~-- 967 (1135)
++.. ... +. +.....+.|+|+|+|++ +++-.....|+.++.+... .+. ......
T Consensus 278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g 357 (496)
T 3kya_A 278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357 (496)
T ss_dssp HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT
T ss_pred cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC
Confidence 5543 112 11 22344689999999995 5555667788886654321 110 011111
Q ss_pred CCCCCC------CCCCce-EEEEC-------CCCcEEEE-EecCeEEEEecCCceeeccCCC---------------C--
Q 001159 968 PAGRQS------PLVGET-KVQFH-------NDQTHLLV-VHESQISVYDSKLECSRSWSPK---------------D-- 1015 (1135)
Q Consensus 968 ~~~~~~------~~~~v~-~~~~s-------~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~---------------~-- 1015 (1135)
..+... ...... .++.. ++|.++++ ..+.+|+.++.++. +..+... +
T Consensus 358 ~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~ 436 (496)
T 3kya_A 358 QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGD 436 (496)
T ss_dssp BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEE
T ss_pred CCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCC
Confidence 111110 001233 44554 55666666 56788999987553 2222110 0
Q ss_pred ----CCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEECCCceeee
Q 001159 1016 ----ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAETLRFRC 1054 (1135)
Q Consensus 1016 ----~h~~~i~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~~~~~ 1054 (1135)
+.-.....|+++++ |.++++=..+..|+.++++......
T Consensus 437 ~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 437 LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 11234678999997 7777766778899999988755443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.005 Score=74.57 Aligned_cols=208 Identities=10% Similarity=-0.013 Sum_probs=132.2
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCc----cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
...+..++|++.+..|..+. .+.|+.+++... .....+.........|++.+.++++.++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45678999999777777666 588999998753 222333334456778999984445556556678999999885
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEc-CC-CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
......+........+|++.|.+.+|..+. .+ +.|...+++...... .+.. . ......|++++.+..|++
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv~~---~---l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---N---IQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS---S---CSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EEeC---C---CCCceEEEEecCCCeEEE
Confidence 543333444455689999999865555554 23 678888887644211 1111 1 134689999988887777
Q ss_pred E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 993 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
+ ..+.|..+++.+.....+...........+|++.. +.++++-...+.|...+..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 5 46789999986555444432211123345677643 3455555677889999988886665553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.7e-05 Score=90.00 Aligned_cols=208 Identities=11% Similarity=-0.011 Sum_probs=127.8
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCC----ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4566789999888887776 57899999875 22222222122345678888635566665556789999998755
Q ss_pred eeeEEecCcCCCeEEEEEcCCCCeEEEEcC-C-CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
.....+........+|++.|++.+|+.+.. . +.|...+++..... ..+.. . ......++|+|+++.|+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~~-~-----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTE-N-----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESCS-S-----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEeC-C-----CCCccEEEEeccCCEEEEE
Confidence 433333333345788999997655554432 2 67877777643211 11111 0 1345789999987777664
Q ss_pred --ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 994 --HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 994 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
..+.|.++++.+.....+............|++..+ .++++....+.|..++..+|+.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 567899999855443333321111122345566544 5566666778999999999988877754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.023 Score=68.76 Aligned_cols=232 Identities=8% Similarity=-0.001 Sum_probs=143.4
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC----eeeeeecCCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1135)
+|+.+ ....|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 34333 3455777777764332 23334556889999986664 5556666788999997652 2223333344
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....|++.+.. +.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-. .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 556788887654 256666677889999998865544444445556889999998777776532 11367888888643
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
. ...+....-.....|++++.+..|+.+. ..+.|...+++.......+..........+|++..+ .++++-...+.|
T Consensus 548 ~-~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAI 625 (791)
T ss_dssp C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEE
T ss_pred c-eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEE
Confidence 3 3333322222678899998777777664 557899999876555544443322223456666432 344444456777
Q ss_pred EEEEcCCC
Q 001159 657 KILANSDG 664 (1135)
Q Consensus 657 ~iwd~~~~ 664 (1135)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 77776666
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.73 E-value=2.5e-05 Score=62.62 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCc
Q 001159 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1135)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1135)
|+.++.||++||..||.|.||..||.+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 889999999999999999999999999999999864
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0089 Score=63.35 Aligned_cols=196 Identities=10% Similarity=0.193 Sum_probs=122.2
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecC---CCc---EEEEEe-C--CCcEEEEEcc--cceeeE
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DNN---IIAIGM-E--DSSVQIYNVR--VDEVKT 919 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~---~~~---~lasg~-~--dg~v~iwd~~--~~~~~~ 919 (1135)
...+++... .+.+.|||+ +|+.++.+.. +.++.+.+-|. +++ ++++.. . +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 444544444 688999999 8888888853 66777777661 121 233333 3 5789999774 333 44
Q ss_pred EecC------cC-CCeEEEEE--cCC-CC-eEEEEcCCCcEEEEeCCC---CceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 920 KLKG------HQ-NRITGLAF--SPT-LN-ALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 920 ~l~~------h~-~~i~~l~~--s~d-~~-~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
.+.. .. ..+..+|+ +|. ++ +++....+|.+..|++.. +. ...+.++...-. ..+-.|+..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC----CCcceEEEcC
Confidence 4421 11 56778888 775 44 677888899999999843 21 222223332211 3567889999
Q ss_pred CCcEEEEEe-cCeEEEEecC------CceeeccCCCCCCCCCEEEEEE--eeCCC-EEEEEe-CCCeEEEEECC-Cceee
Q 001159 986 DQTHLLVVH-ESQISVYDSK------LECSRSWSPKDALPAPISSAIY--SCDGL-LVYAGF-CDGAIGVFDAE-TLRFR 1053 (1135)
Q Consensus 986 dg~~l~~~~-d~~v~vwd~~------~~~~~~~~~~~~h~~~i~~~~~--s~d~~-~l~~~~-~dg~I~vwd~~-~~~~~ 1053 (1135)
...+|+++. +..|..|+.. ...+..+. ...-...+..|++ .++++ ||++++ .+.+..|||.. +.+.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 888888874 4445555542 22332222 1111346888888 45666 666665 67799999997 77777
Q ss_pred eeeC
Q 001159 1054 CRIG 1057 (1135)
Q Consensus 1054 ~~~~ 1057 (1135)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0061 Score=64.59 Aligned_cols=185 Identities=12% Similarity=0.136 Sum_probs=118.6
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC--Ccc---EEEEEEc---CCeEEEEeCcCCC-ceeEecC
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTAI---DGKIKAWLYDYLG-SRVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--~~~---~l~s~s~---dg~i~iwd~~~~~-~~~~~~~ 539 (1135)
+++.....+-+.++|+ +|+.++.+.. +.++.+..-|.- .|. ++++... +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4565666788999998 9999988864 567777655521 111 2333333 5789999774222 2333311
Q ss_pred ------CC-CcEEEEEE--cCC-CC-EEEEEecCCCCCCeEEEEEC-------CCCeEEEEeecccCCceeEEEecCCCC
Q 001159 540 ------PG-NWCTMMAY--SAD-GT-RLFSCGTSKEGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 540 ------~~-~~i~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
.. ..+..+++ ++. ++ ++++.. +++.+..|++ .+++.+++|.... .+..+...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 45666777 774 44 344443 3678888887 2446778887654 577888899889
Q ss_pred EEEEEeCCCeEEEEECC-----CCceEEEEeCCCCCCCcceEEE--cCCCC-EEEEEE-CCCcEEEEEcC
Q 001159 602 RFLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~ 662 (1135)
+|+.+-++.-|..++.+ +++.+..+....-...+..+++ .++++ +|++++ .++++.+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999998777777754 3455555533222235777877 45555 566555 57799999986
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0096 Score=62.52 Aligned_cols=205 Identities=11% Similarity=0.059 Sum_probs=126.7
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEE-EeC----CCC--CeEEEEE---ecCCCcEEEEEeC-----
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMS----PPP--AATFLAF---HPQDNNIIAIGME----- 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~-~~~----h~~--~v~~l~~---sp~~~~~lasg~~----- 903 (1135)
.....+++|.+....+..++ .++|..||...+..... +.+ ... .+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 34456789988666666666 89999999986654333 222 111 3578999 68 6778776442
Q ss_pred --------CCcEEEEEcc---cceeeEEec--CcC-----------CCeEEEEEcCCCCeEEEEcCC-CcEEEEeCCCCc
Q 001159 904 --------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWE 958 (1135)
Q Consensus 904 --------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~i~~l~~s~d~~~l~s~~~D-~~i~iwd~~~~~ 958 (1135)
+..|..||+. +++.+.... ... .....++..++|+..++.+.- +.|...+.+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999999 787665443 111 247899999999999998877 777666665432
Q ss_pred eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCC-ce--eeccC-CCCCCCCCEEEE-EEeeCCCE
Q 001159 959 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL-EC--SRSWS-PKDALPAPISSA-IYSCDGLL 1032 (1135)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~-~~--~~~~~-~~~~h~~~i~~~-~~s~d~~~ 1032 (1135)
.....+....... ....+.++++|||..|++. ..+.+..+|+.. .. +..-. ...+.......+ ..-.+|+.
T Consensus 171 -~~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 171 -VSTFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp -EEEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred -EeeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 2222222221111 2456799999999988883 488899999842 11 11100 100112233443 43457887
Q ss_pred -EEEEeCCCeEEEEECCC
Q 001159 1033 -VYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1033 -l~~~~~dg~I~vwd~~~ 1049 (1135)
|++.+..+.+.+...+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 55555666655555543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00034 Score=84.43 Aligned_cols=227 Identities=8% Similarity=-0.006 Sum_probs=131.6
Q ss_pred EEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEccc----ceeeEEecCcCCCeEE
Q 001159 856 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRV----DEVKTKLKGHQNRITG 930 (1135)
Q Consensus 856 la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~ 930 (1135)
|+.+....|++.++.+......+. ....+..|+|++ .+..|+.+ ...+.|+.+++.+ ......+........+
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred EEecCccceEEEeCCCCcceeeec-cCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 333345678888887765544433 234567899998 44455444 4568899999875 2222222222234567
Q ss_pred EEEcCC-CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe---cCeEEEEecCCc
Q 001159 931 LAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH---ESQISVYDSKLE 1006 (1135)
Q Consensus 931 l~~s~d-~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---d~~v~vwd~~~~ 1006 (1135)
|++.+. ++++++-...+.|.+.++....... .+.. .. .....++++|++.+|+.+. .+.|.++++.+.
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~~-~~-----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFRE-QG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEE--ECCC-SS-----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEE--EEeC-CC-----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 888854 4555665667889999987653211 1111 10 2357899999877666642 267888877554
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEE-EEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLV-YAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l-~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1135)
....+.... ......|+|++++..| ++-+..+.|.+++++.......+.... ....+.++++.. +.+
T Consensus 530 ~~~~l~~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~--------~~~~P~glavd~--~~l 597 (699)
T 1n7d_A 530 DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--------RLAHPFSLAVFE--DKV 597 (699)
T ss_dssp CCCEESCSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS--------SCSSCCCCEEET--TEE
T ss_pred CeeEEEeCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC--------cCCCceEeEEEC--CEE
Confidence 433322111 2345679999876554 455567789999997533222221110 112333445443 356
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001159 1086 IALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1086 l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+++....+.|..++..+++
T Consensus 598 ywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEECSTTTCEEEEETTTEE
T ss_pred EEEeCCCCeEEEEEccCCC
Confidence 6676677899999876655
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.14 Score=55.25 Aligned_cols=234 Identities=17% Similarity=0.156 Sum_probs=151.9
Q ss_pred EEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceeeEEecC
Q 001159 845 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKG 923 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 923 (1135)
.+.-.+|..+.+|.-...++.|+|+++...++.+.-.. .|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 35667888888888888999999999998888877444 455555543 24666554 56799999974 356666665
Q ss_pred cC----CCeEEEEEcCCCCeEEEEcC-------CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-----
Q 001159 924 HQ----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----- 987 (1135)
Q Consensus 924 h~----~~i~~l~~s~d~~~l~s~~~-------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----- 987 (1135)
|. ..|..-..++|.++++..|- .|.+.+|..+.+. -+...||. ..-..+..+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGha-----a~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHA-----ASFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSE-----EEEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeee-----eeeEEEecCCCCCCc
Confidence 53 35788888999999886552 3678899888754 33445553 1122222232
Q ss_pred cEEEEEe----cCeEEEEec-CC---------ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceee
Q 001159 988 THLLVVH----ESQISVYDS-KL---------ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1053 (1135)
Q Consensus 988 ~~l~~~~----d~~v~vwd~-~~---------~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~ 1053 (1135)
..++.+. .+++.|-++ .. +.+..+.+.+.-..--.++..|+.-..+..-+.-|.|++||++||.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2333332 378888888 21 112223333333455668899998888888889999999999999999
Q ss_pred eeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1054 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+.-+... ......+..... .=++.....|.|.--.+.+..
T Consensus 294 ~~nrIs~----------~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNRISG----------ETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEECCS----------SCEEEEEEETTT-TEEEEEETTCEEEEEEECTTT
T ss_pred eeecccC----------CceEEecccCCC-CcEEEEccCceEEEEEEcccc
Confidence 8655331 222333343323 345555688887777666544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.025 Score=61.80 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=121.0
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccE--EEEEe---CCCCCeEEEEEecCC----CcEEEEEeCC-----CcE
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQD----NNIIAIGMED-----SSV 907 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~h~~~v~~l~~sp~~----~~~lasg~~d-----g~v 907 (1135)
.....++|.|||+++++-.+|.|++++ +++. +..+. ........|+|+| + +.+.++-..+ +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence 356789999999966665589999998 4432 22221 1234688999999 5 4444443332 678
Q ss_pred EEEEcccce------eeEEec---CcCCCeEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCCceec----
Q 001159 908 QIYNVRVDE------VKTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLK---- 961 (1135)
Q Consensus 908 ~iwd~~~~~------~~~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iwd~~~~~~~~---- 961 (1135)
..|+...++ .+..+. +.......|+|.|||.++++.+.. +.|.-++.+. +...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcc
Confidence 888876431 122233 111124689999999877775432 3455555442 1000
Q ss_pred -------eeeeecCCCCCCCCCCceEEEECC-CCcEEEE-EecCe--------EEEEecCCce---------------ee
Q 001159 962 -------SRFIQAPAGRQSPLVGETKVQFHN-DQTHLLV-VHESQ--------ISVYDSKLEC---------------SR 1009 (1135)
Q Consensus 962 -------~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~-~~d~~--------v~vwd~~~~~---------------~~ 1009 (1135)
.... ..++ .....++|+| +|.++++ ...+. |.+... +.. ..
T Consensus 187 ~~~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 187 LGRRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTCTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCC
T ss_pred cCCCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcC
Confidence 0000 0011 2356789999 6676666 22222 333322 110 00
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeee-CCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..... .+......++| .+|.++++....+.|...+++........ ....++ ....++..+++.| ||.++++
T Consensus 260 p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 260 PLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGP-DGALYVT 331 (352)
T ss_dssp CSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECT-TSCEEEE
T ss_pred CeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECC-CCcEEEE
Confidence 00000 11234567888 57777777667778888877644311000 001111 1124567888888 5666665
Q ss_pred Ee
Q 001159 1089 GM 1090 (1135)
Q Consensus 1089 g~ 1090 (1135)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 43
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.046 Score=59.64 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=125.4
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCcc-EEEEEe---CCCCCeEEEEEecC---CCcEEEEEeC---C----Cc
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SS 906 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~h~~~v~~l~~sp~---~~~~lasg~~---d----g~ 906 (1135)
-.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.+.++-+. + +.
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34568899999998666655899999974 454 222221 12245889999993 2444444332 3 56
Q ss_pred EEEEEcccc-------eee-EEecC-cCCCeEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCCcee----
Q 001159 907 VQIYNVRVD-------EVK-TKLKG-HQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL---- 960 (1135)
Q Consensus 907 v~iwd~~~~-------~~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iwd~~~~~~~---- 960 (1135)
|..|+.... +.+ ..+.. .......|+|.|||.++++.+.. +.|.-.+.+.. ..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCC
Confidence 777776643 111 12221 11124679999999988876532 34444444321 00
Q ss_pred --ceeeeecCCCCCCCCCCceEEEECC-CCcEEEEE--ec--CeEEEEecCCce------------------eeccCCCC
Q 001159 961 --KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HE--SQISVYDSKLEC------------------SRSWSPKD 1015 (1135)
Q Consensus 961 --~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d--~~v~vwd~~~~~------------------~~~~~~~~ 1015 (1135)
..... ..++ .....++|+| +|.++++- .+ ..|.+... +.. +..+. .
T Consensus 186 f~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~--~ 256 (354)
T 3a9g_A 186 FPNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTG--S 256 (354)
T ss_dssp STTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECT--T
T ss_pred CCCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecC--C
Confidence 00000 0111 2356899999 67766662 22 22433322 110 00110 1
Q ss_pred CCCCCEEEEEEe-------eCCCEEEEEeCCCeEEEEECCCc-eeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1016 ALPAPISSAIYS-------CDGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1016 ~h~~~i~~~~~s-------~d~~~l~~~~~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
. ......++|. .+|.++++....+.|...+++.. +..... ..+. ....++..+++.| ||.+.+
T Consensus 257 ~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~----~~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 257 E-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK----NVFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp C-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT----TTSCCEEEEEECT-TSCEEE
T ss_pred C-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc----CCCCCeeEEEECC-CCcEEE
Confidence 1 3457788883 57877777777788988888753 322100 1110 1124577888888 677666
Q ss_pred EEe
Q 001159 1088 LGM 1090 (1135)
Q Consensus 1088 sg~ 1090 (1135)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.18 Score=54.40 Aligned_cols=261 Identities=9% Similarity=0.081 Sum_probs=158.3
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
..+|.+.|+..+..+..-.-.. .+.-++|..+.++.-. ..++.|+|+++...++....... |.-=.|-. .+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWkWis-~~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS-LN 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEEEE-TT
T ss_pred CCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEEecC-CC
Confidence 4578899998765543322211 2355788888777654 67999999999999998886543 44444433 33
Q ss_pred EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc
Q 001159 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
.|+..+. ..|.-|++.....+.+.+..|..-
T Consensus 118 ~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 5665554 489999986543444444433211
Q ss_pred ccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc-------cceee
Q 001159 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS-------NAVHK 798 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~-------dg~i~ 798 (1135)
...+| .....+++.++++..+- .|.+.
T Consensus 149 ---------------------------------------------~~~QI-InY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 149 ---------------------------------------------AGCQI-INYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp ---------------------------------------------TTCEE-EEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred ---------------------------------------------ccceE-EEEEECCCCCeEEEEeecccCCcccceEE
Confidence 12334 66666777777665432 25566
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC---CCEEEEEe----CCeEEEEECCC
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS----GGKVSLFNMMT 871 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d---g~~la~~~----dg~i~vwd~~~ 871 (1135)
+|+... +.... +.| | ......+.+.-+ .++++.+. .++++|.++..
T Consensus 183 LYS~er----------------------~~sQ~--ieG--h-aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 183 LYSVDR----------------------KVSQP--IEG--H-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp EEESTT----------------------CCEEE--ECC--S-EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred Eeeccc----------------------cccch--hee--e-eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 665432 22111 222 3 211111111111 12344443 37899999854
Q ss_pred c--------cEEEEE-e---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCe
Q 001159 872 F--------KVMTMF-M---SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 939 (1135)
Q Consensus 872 ~--------~~~~~~-~---~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~ 939 (1135)
. +....+ - ...+--.++..|+ .-..+..-+.-|.|++||++++.++..-+--.+.|..-+......-
T Consensus 236 ~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~G 314 (494)
T 1bpo_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (494)
T ss_dssp CCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE
T ss_pred CccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCc
Confidence 3 111111 1 1234467888998 6778888999999999999999999877766677777666666666
Q ss_pred EEEEcCCCcEEEEeCCCCc
Q 001159 940 LVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 940 l~s~~~D~~i~iwd~~~~~ 958 (1135)
++.....|.|.--.++...
T Consensus 315 i~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 315 IIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEETTCEEEEEEECTTT
T ss_pred EEEEccCceEEEEEEcccc
Confidence 7777788877777666544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.026 Score=60.85 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCeEEEEe------------CCCeEEEEEeCCCC-ceeeeeEeec-----ccCCEEEEEEec--CCCeEEE
Q 001159 411 VNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTG-ELRQHLEIDA-----HVGGVNDIAFAH--PNKQLCI 470 (1135)
Q Consensus 411 V~~v~~spd~~~las~~------------~dg~i~iwd~~~~~-~~~~~~~l~~-----h~~~v~~v~~s~--d~~~~~l 470 (1135)
.-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566788886666652 68999999998432 12222 3333 234677788766 4543233
Q ss_pred EEEcC--CCcEEEEEcCCCe----eeeeecCC-CCCeeEEEeeccCCccEEEEEE-----------------cCCeEEEE
Q 001159 471 VTCGD--DKMIKVWDVVAGR----KQYTFEGH-EAPVYSVCPHHKESIQFIFSTA-----------------IDGKIKAW 526 (1135)
Q Consensus 471 ~s~~~--d~~i~iwd~~~~~----~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s-----------------~dg~i~iw 526 (1135)
++-.. +.+|.+|++..+. .+.++.+. -...+.+.+.+++ .+.++.. ..|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 44333 5688888876532 22334332 2356788887643 6655543 12445445
Q ss_pred eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeE--EEEeecccCCceeEEEecC-CCCE
Q 001159 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~i~~s~-~~~~ 602 (1135)
|. .+.. .+...-...+.++|+||++.|+.+.. ..+.|+.|++.. +.. .+.+.. ......+++++ +|+.
T Consensus 209 d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 209 SP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDL 280 (355)
T ss_dssp CT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCE
T ss_pred EC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCcE
Confidence 43 3222 22222335688999999999988753 367899999863 332 233421 23567789999 5988
Q ss_pred EEEEeCC-CeEEEEECC--CCceEEEEe
Q 001159 603 FLAAGDE-FQIKFWDMD--NMNMLTTVD 627 (1135)
Q Consensus 603 l~~~~~d-g~i~iwd~~--~~~~~~~~~ 627 (1135)
.+++..+ +.|..|+.. .+..+..+.
T Consensus 281 wva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 7766533 345555544 244444444
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00059 Score=63.42 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.+ ++|+|+.|.||||+..|+..+|..||++.-..+...+.+.+++|..+....++.+++....++. .+.+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s 126 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 126 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence 4444 9999999999999999999999999998877776678899999999999988888887777765 3555
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 127 ~~lL~~fL~~ 136 (156)
T 2nxp_A 127 YQLLKRHLQE 136 (156)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5677777765
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=64.31 Aligned_cols=81 Identities=12% Similarity=0.209 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|+||||+..|..++|..|+++.-..+... .+.+++|..+....++.+++....+++ .+.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4454 999999999999999999999999999887777666 899999999999988887777665543 3555
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-+.|+..|++
T Consensus 107 ~~lL~~fL~~ 116 (138)
T 2j4b_A 107 FDLLINFLEE 116 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5677777766
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0074 Score=63.38 Aligned_cols=166 Identities=9% Similarity=0.109 Sum_probs=108.2
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE-ecC----cCC--CeEEEEE---cCCCCeEEEEc-------
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKG----HQN--RITGLAF---SPTLNALVSSG------- 944 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~----h~~--~i~~l~~---s~d~~~l~s~~------- 944 (1135)
.---.+++|++.++.++++.-..++|..|+...+..... +.+ ... .+.+|.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 334567899885566666555899999999876543332 332 111 3679999 68887777543
Q ss_pred ------CCCcEEEEeCC---CCceeceeeeecCC-------CCCCCCCCceEEEECCCCcEEEE-Eec-CeEEEEecCCc
Q 001159 945 ------ADAQLCMWSID---KWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLV-VHE-SQISVYDSKLE 1006 (1135)
Q Consensus 945 ------~D~~i~iwd~~---~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~-~~d-~~v~vwd~~~~ 1006 (1135)
.+..|..+|+. +++.+....+.... +.. ......++..++|+..++ +.. +.|...+..++
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26779999999 76654322221110 001 034689999999998887 555 67666666655
Q ss_pred eeeccCCC---CCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1007 CSRSWSPK---DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1007 ~~~~~~~~---~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
.+..+... .......+.|++.|||+.|++....|.+..+|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 44433211 11123367899999999988887799999999984
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.082 Score=57.65 Aligned_cols=240 Identities=10% Similarity=0.039 Sum_probs=126.4
Q ss_pred CceEEEEeecCCC-EEEEEeCCeEEEEECCCccEEEEEe-------CCCCCeEEEEEecC---CCcEEEEEeC-------
Q 001159 842 ESAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME------- 903 (1135)
Q Consensus 842 ~~i~~l~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~sp~---~~~~lasg~~------- 903 (1135)
.....|+|.|||+ ++++-..|.|++++.. ++....+. ........|+|+|+ ++.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3568999999999 6655558999999854 33211111 12235689999993 3444443322
Q ss_pred CCcEEEEEcccc--e--eeE----Eec-----CcCCCeEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCC
Q 001159 904 DSSVQIYNVRVD--E--VKT----KLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKW 957 (1135)
Q Consensus 904 dg~v~iwd~~~~--~--~~~----~l~-----~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iwd~~~~ 957 (1135)
...|..|++..+ + ... .+. .|. ...|+|.|||.++++.+.. +.|.-.+.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666432 1 111 121 122 3579999999877776542 34555555431
Q ss_pred cee----------ceeeeecCCCCCCCCCCceEEEECC-CCcEEEEE--ecCeEEEEec-CCcee---------------
Q 001159 958 EKL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HESQISVYDS-KLECS--------------- 1008 (1135)
Q Consensus 958 ~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~v~vwd~-~~~~~--------------- 1008 (1135)
-.. ...... .++ .....++|+| +|.++++- .++.=.|.-+ .+...
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 000 000000 011 2457899999 66666662 2222223222 11110
Q ss_pred ---------eccCCC---CCCCCCEEEEEEee-------CCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCC
Q 001159 1009 ---------RSWSPK---DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSN 1069 (1135)
Q Consensus 1009 ---------~~~~~~---~~h~~~i~~~~~s~-------d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
..+... -.+......++|.. +|.++++....+.|...+++.++...... .+. ..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~ 321 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DR 321 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GG
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CC
Confidence 000000 01123567788863 57777777778888888888665443211 110 11
Q ss_pred CCccEEEEecCCCCCEEEEEe-cCCcEEEEec
Q 001159 1070 TAHPLVIAPHPSEPNQIALGM-SDGAVHVVEP 1100 (1135)
Q Consensus 1070 ~~~~~~~~~~~~~~~~l~sg~-~dg~v~~W~~ 1100 (1135)
..++..+.+.| ||.++++.. .+| +||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 14677889988 677666533 344 45544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.35 Score=54.53 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCceEEEEeecCCCEEEEEeC-CeEEEEECCCccEE--EEEeC------CCCCeEEEEEecC--CCcEEEEEeC------
Q 001159 841 EESAACIALSKNDSYVMSASG-GKVSLFNMMTFKVM--TMFMS------PPPAATFLAFHPQ--DNNIIAIGME------ 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~d-g~i~vwd~~~~~~~--~~~~~------h~~~v~~l~~sp~--~~~~lasg~~------ 903 (1135)
-...+.|+|.|||+++++-.. +.|++++..+++.. ..+.. .......|+|+|+ .+..|.....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999998887665 47999987655432 22221 1245679999993 0344444432
Q ss_pred -------CCcEEEEEcccc-------eee-EEecC-cCCCeEEEEEcCCCCeEEEEcC
Q 001159 904 -------DSSVQIYNVRVD-------EVK-TKLKG-HQNRITGLAFSPTLNALVSSGA 945 (1135)
Q Consensus 904 -------dg~v~iwd~~~~-------~~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~ 945 (1135)
...|.-|++..+ +.+ ..+.. .......|+|.|||.++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235555655421 111 11221 1123689999999998888764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.083 Score=56.43 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=117.8
Q ss_pred CCEEEEEe---CCeEEEEECCCccEEEE--EeCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEccccee--eEEe
Q 001159 853 DSYVMSAS---GGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEV--KTKL 921 (1135)
Q Consensus 853 g~~la~~~---dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~--~~~l 921 (1135)
+.+++.|+ ...+.+||..+.+-... +......-.++. - ++.+++.|+.+ ..+.+||..+++- +..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 34555665 25799999987643221 111111122222 2 56788888765 6788999887643 2222
Q ss_pred cCcCCCeEEEEEcCCCCeEEEEcCC------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-e
Q 001159 922 KGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H 994 (1135)
Q Consensus 922 ~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~ 994 (1135)
......-.++.+ ++++++.|+.+ ..+.+||..+.+-.. +...... ..-..++ .-+++.++.+ .
T Consensus 89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~----r~~~~~~-~~~~~iyv~GG~ 158 (306)
T 3ii7_A 89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQ----RCSHGMV-EANGLIYVCGGS 158 (306)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSSC----CBSCEEE-EETTEEEEECCE
T ss_pred CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcCC----cceeEEE-EECCEEEEECCC
Confidence 221112222222 67788888765 458899988765221 1111110 1111222 2366666663 2
Q ss_pred ---------cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeeeeCCce
Q 001159 995 ---------ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRIGPSA 1060 (1135)
Q Consensus 995 ---------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~ 1060 (1135)
-..+.+||.....-....... .......+..-++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 233 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMI--EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP--- 233 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC---
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCcc--chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC---
Confidence 345889998444333332211 1111112222377888887754 358999999875443211
Q ss_pred eccccccCCCCccEEEEecCCCCCEEEEEecC-----CcEEEEecCCCc
Q 001159 1061 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAE 1104 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~v~~W~~~~~~ 1104 (1135)
.|.. .....++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 234 -~p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 234 -MPWK----GVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp -CSCC----BSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred -CCCC----ccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 1111 111222333 56788888865 467888887755
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.24 Score=53.93 Aligned_cols=230 Identities=16% Similarity=0.083 Sum_probs=119.1
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc-ccccCCceeecccccccchhhhhccCCCcceEEEEEcCC---CCe
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 422 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---~~~ 422 (1135)
...+.++|.|+|+ ++++ ..+|.|.+++. +++ .+.. + + +..........|+|+|+ +..
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~-~G~~~~~~-------~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLISP-SGKKLVAS-------F-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEECS-SCEEEEEE-------C-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEeC-CCceEeec-------c-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4688999999997 5554 55699998873 443 1110 0 0 11223356889999998 555
Q ss_pred EEEEeC----C----CeEEEEEeCCCC-ce---eee-eEeec-ccCCEEEEEEecCCCeEEEEEEcC-------------
Q 001159 423 LGVAFS----K----HIVHLYTYNPTG-EL---RQH-LEIDA-HVGGVNDIAFAHPNKQLCIVTCGD------------- 475 (1135)
Q Consensus 423 las~~~----d----g~i~iwd~~~~~-~~---~~~-~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~------------- 475 (1135)
|.++.. + +.|..|+...+. .+ +.. ..+.. .......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 544433 3 568888876541 11 111 11221 111246799999997 4554332
Q ss_pred CCcEEEEEcCCCe----------eeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCC----------
Q 001159 476 DKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLG---------- 532 (1135)
Q Consensus 476 d~~i~iwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~---------- 532 (1135)
.+.|...+.. ++ .+.. .++. ....++|+|.. |.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 1345544532 22 1111 2333 34578888732 24444332221 13222 1111
Q ss_pred --------ceeEecCCCCcEEEEEEc-------CCCCEEEEEecCCCCCCeEEEEECCCC-eEE--EEeecccCCceeEE
Q 001159 533 --------SRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVV 594 (1135)
Q Consensus 533 --------~~~~~~~~~~~i~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~i 594 (1135)
....+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..+
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 112221223467788884 4565555443 2567888887643 332 22322112367889
Q ss_pred EecCCCCEEEEEe
Q 001159 595 QFDTTRNRFLAAG 607 (1135)
Q Consensus 595 ~~s~~~~~l~~~~ 607 (1135)
++.|||..+++..
T Consensus 318 ~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 318 VIDDDGGILISTS 330 (354)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999987666553
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00039 Score=63.51 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=73.4
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|+||||+..| .++|..|+++.-..+...+.+.+++|..+....++.+++....+++ .+.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4454 99999999999999999 9999999998777775567788899998888888887777766654 3555
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCchHHHHHHHHHHHH
Q 001159 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1135)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1135)
-..|+..|++--.. -.+-|..||++.+.
T Consensus 109 ~~lL~~fL~~~~~~-------------gg~~ll~Iin~~i~ 136 (148)
T 2j49_A 109 LNLLLYFLNENESI-------------GGSLIISVINQHLD 136 (148)
T ss_dssp HHHHHHHHHHTGGG-------------THHHHHHHHHHHEE
T ss_pred HHHHHHHHHHcCcc-------------cHHHHHHHHHHhee
Confidence 56666666652211 12367777776543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.052 Score=59.28 Aligned_cols=229 Identities=13% Similarity=0.027 Sum_probs=117.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEee---cccCCEEEEEEecC---CCeEEEEEEcCC-----Cc
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID---AHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 478 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~---~h~~~v~~v~~s~d---~~~~~l~s~~~d-----~~ 478 (1135)
.-..++|.|||++++ +..+|.|.+++ .++ ......+. ........|+|+|+ +..+ .++-..+ ..
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l-Yv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYV-YAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEE-EEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEE-EEEEecCCCCCccE
Confidence 467899999998555 45679999998 332 22111111 12346889999998 5543 3333322 57
Q ss_pred EEEEEcCCCe-----ee-eeec---CCCCCeeEEEeeccCCccEEEEEEc-------------CCeEEEEeCcCC-----
Q 001159 479 IKVWDVVAGR-----KQ-YTFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 531 (1135)
Q Consensus 479 i~iwd~~~~~-----~~-~~~~---~h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~----- 531 (1135)
|..++...+. .+ ..+. +.......++|.|++ .+.++.+. .|.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876431 11 1233 111223578887754 55555332 245665655420
Q ss_pred -------CceeEecCCCCcEEEEEEcC-CCCEEEEEecCCCC-----CCeEEEEECCC----------------CeEEEE
Q 001159 532 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 582 (1135)
Q Consensus 532 -------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 582 (1135)
.....+...-.....++|+| +++..++-. ..+. ...|.+..... ...+..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 01111111122456789999 555444332 1111 11243332211 011222
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce------EEEEeCCCCCCCcceEEEcCCCCEEEEEE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 651 (1135)
+..+. ....++| .+|..+++.-..+.|...+++.... ...+-. ....+..+++.|||.+.++..
T Consensus 264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 21111 3455666 3566666555667787777764321 122211 123678999999998776654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.08 Score=56.37 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=118.7
Q ss_pred CCCEEEEEe-C------CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCC-----CcEEEEEcccce--
Q 001159 852 NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDE-- 916 (1135)
Q Consensus 852 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~-- 916 (1135)
++.+++.|+ . ..+.+||+.+.+-...-....... .+++. . ++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455566655 2 368999988764322111111111 22222 3 56788888865 468999988754
Q ss_pred ---eeEEecCcCCCeEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 917 ---VKTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 917 ---~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.+..+......-.++.+ ++++++.++.+ ..+.++|..+.+-...... +... .....+. .+++
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r----~~~~~~~--~~~~ 161 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTAR----EGAGLVV--ASGV 161 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSCC----BSCEEEE--ETTE
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCCc----ccceEEE--ECCE
Confidence 22222222222222222 67777777654 3588888877552221111 1111 1112222 2666
Q ss_pred EEEEE-e-----cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeeeeC
Q 001159 989 HLLVV-H-----ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 989 ~l~~~-~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~ 1057 (1135)
.++.+ . -..+.+||.....-....... .......+..-++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA--TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCC--cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 66664 2 256889998433333322211 1111112223477888888764 468999999876543211
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~ 1109 (1135)
.+.. . ....++.. ++++++.|+.++ .+.+||+.+.+ |..
T Consensus 240 ----~p~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 283 (301)
T 2vpj_A 240 ----MTTP---R-CYVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEV 283 (301)
T ss_dssp ----CSSC---C-BSCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEE
T ss_pred ----CCCc---c-cceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEE
Confidence 1111 1 11122232 567888888763 57788887644 543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.093 Score=55.90 Aligned_cols=232 Identities=12% Similarity=0.049 Sum_probs=114.7
Q ss_pred CCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcCCCee
Q 001159 419 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRK 489 (1135)
Q Consensus 419 d~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~ 489 (1135)
++..++.|+.+ ..+..||+.+.+ ......+......-..+. -++. +++.|+.+ ..+.+||..+.+-
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence 34456666543 358888888753 221111211111111222 2454 66667644 3688999887653
Q ss_pred ee--eecCCCCCeeEEEeeccCCccEEEEEEcCC-----eEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEe
Q 001159 490 QY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 490 ~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.. .+........++.+ ++.+++.|+.++ .+.+||+.+.+-...-... .....++. -+++.++.|+
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 163 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGG 163 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeC
Confidence 32 22211112222222 236777777553 4778887765433321111 11222222 2556666666
Q ss_pred cCCCC---CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCC
Q 001159 561 TSKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 561 ~~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
.+... ...+.+||+.+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 43321 34689999988765433211111111122222 46666677653 4689999988654433222111
Q ss_pred CCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 664 (1135)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111122223677777777543 4788888765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.049 Score=58.07 Aligned_cols=232 Identities=12% Similarity=0.037 Sum_probs=116.5
Q ss_pred CCCeEEEEe-CC-----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcCCC
Q 001159 419 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 487 (1135)
Q Consensus 419 d~~~las~~-~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~ 487 (1135)
++..++.|+ .+ ..+.+||+.+.+- .....+.........+ ..++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 456666766 33 3688899887542 2111121111111122 23454 66667654 46899998876
Q ss_pred e---e--eeeecCCCCCeeEEEeeccCCccEEEEEEcC-----CeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCE
Q 001159 488 R---K--QYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 ~---~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~ 555 (1135)
+ - +..+........++.+ ++.+++.|+.+ ..+.+||..+.+-...-... .....++.+ +++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEE
Confidence 5 2 2222211122222222 23666777644 35888888765533322111 112222222 5666
Q ss_pred EEEEecCCC-CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCC
Q 001159 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.|+.+.. ....+.+||+.+.+-...-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 666664322 13568999998876543322111111112222 245666667653 46899999887654332222
Q ss_pred CCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 664 (1135)
.. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11 11112222366777777755 35778887665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.13 Score=54.95 Aligned_cols=230 Identities=7% Similarity=-0.040 Sum_probs=116.1
Q ss_pred CeEEEEeC--CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCeeee--e
Q 001159 421 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQY--T 492 (1135)
Q Consensus 421 ~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~--~ 492 (1135)
.+++.|+. ...+.+||..+++-. ....+......-..+. -++. +++.|+.+ ..+.++|+.+++-.. .
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 35556654 356889998875422 1111211111112222 2454 66777654 678899988875432 2
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEecCCC
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-... .....++. -+++.++.++.+..
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2211112222222 33677777765 45888888765433321111 11122222 25666666664332
Q ss_pred C-----CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCC
Q 001159 565 G-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 565 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
. ...+.+||+.+.+-...-.......-.+++.. +++.++.|+.+ ..+.+||+.+.+-...-........
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 2 35689999988764433221111111122222 45666666543 4688999988654332221111111
Q ss_pred cceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 664 (1135)
..++.+ ++++++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 222222 67778888743 46788888765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.16 Score=54.10 Aligned_cols=231 Identities=14% Similarity=0.151 Sum_probs=117.9
Q ss_pred CCCEEEEEe-C----CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCCC-----cEEEEEccccee--e
Q 001159 852 NDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDEV--K 918 (1135)
Q Consensus 852 dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~--~ 918 (1135)
++.+++.|+ + ..+..||+.+.+-...-....... .+++.. ++.+++.|+.++ .+.+||..+.+- +
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 445555555 2 458899988764322211111111 222222 567888887653 588999887642 2
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEcCCC-----cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
..+......-.++. .++++++.|+.++ .+.+||+.+.+-.. +....... .. ..++. -+++.++.+
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r---~~-~~~~~-~~~~iyv~G 162 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRR---SS-VGVGV-VGGLLYAVG 162 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSSCC---BS-CEEEE-ETTEEEEEC
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCCcc---cC-ceEEE-ECCEEEEEe
Confidence 22222111222222 2677888887653 47788887755221 11111100 11 12222 356666663
Q ss_pred -e-------cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeeeeCCce
Q 001159 994 -H-------ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRIGPSA 1060 (1135)
Q Consensus 994 -~-------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~ 1060 (1135)
. -..+.+||.....-............- + +..-++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-G-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-E-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-c-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 2 235888998433332222111001111 2 223478888888765 368999999876543211
Q ss_pred eccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCC
Q 001159 1061 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~ 1109 (1135)
.+.. . ....++.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 238 -~~~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 238 -MNMC---R-RNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp -CSSC---C-BSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred -CCCc---c-ccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 1111 1 11112222 567888888764 48889987755 654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.66 Score=50.37 Aligned_cols=236 Identities=9% Similarity=-0.005 Sum_probs=118.6
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEe----ecccCCEEEEEEecC---CCeEEEEEEcC------C
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHVGGVNDIAFAHP---NKQLCIVTCGD------D 476 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l----~~h~~~v~~v~~s~d---~~~~~l~s~~~------d 476 (1135)
....++|.|+|+.|.++...|.|++++... ........+ .........|+|+|+ +..+++..... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 367899999999444566789999998543 211111111 112345789999996 55433332221 2
Q ss_pred CcEEEEEcCCC--e--eee----eecC---CCCCeeEEEeeccCCccEEEEEEc-------------CCeEEEEeCcCCC
Q 001159 477 KMIKVWDVVAG--R--KQY----TFEG---HEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYLG 532 (1135)
Q Consensus 477 ~~i~iwd~~~~--~--~~~----~~~~---h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~~ 532 (1135)
..|..|++..+ . ... .+.. ....-..++|.|++ .+.++.+. .|.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666766433 1 111 1211 11123568887753 55555433 2456666655320
Q ss_pred ------------ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC--------CCC---------------
Q 001159 533 ------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE--------SEG--------------- 577 (1135)
Q Consensus 533 ------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--------~~~--------------- 577 (1135)
....+.........++|+|+...|+++-...++...|.+... ..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111122222357789999943344443221111112222110 000
Q ss_pred ------eEEEEeecccCCceeEEEecC-------CCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCCCCcceEEEcCC
Q 001159 578 ------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKE 643 (1135)
Q Consensus 578 ------~~~~~~~~~~~~~v~~i~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 643 (1135)
..+..+..+. ....+.|.. +|.++++.-..+.|...+++.++.......- .....+..+++.||
T Consensus 256 ~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0111121111 355566653 4666666667788888888766544332211 11236789999999
Q ss_pred CCEEEEE
Q 001159 644 GSLLAVT 650 (1135)
Q Consensus 644 ~~~l~~~ 650 (1135)
|.+.++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9866643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.19 Score=53.60 Aligned_cols=234 Identities=13% Similarity=0.108 Sum_probs=119.8
Q ss_pred eecCCCEEEEEe-C----CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeC----C-----CcEEEEEcc
Q 001159 849 LSKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME----D-----SSVQIYNVR 913 (1135)
Q Consensus 849 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~ 913 (1135)
..-++.+++.|+ + ..+.+||..+.+-...-....... .+++.. ++.+++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 334667777776 2 469999988765322211111111 123332 5677877776 2 468899988
Q ss_pred cceee--EEecCcCCCeEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 914 VDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 914 ~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+.+-. ..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.. +...... ......+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~---r~~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTR---RIGVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSSC---CBSCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCcc---ccceEEEEE--C
Confidence 76422 222211112222233 67777777643 358889988755221 1111100 011122222 5
Q ss_pred CcEEEEE-e-----cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeee
Q 001159 987 QTHLLVV-H-----ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCR 1055 (1135)
Q Consensus 987 g~~l~~~-~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~ 1055 (1135)
+++++.+ . -..+.+||.....-............-.++ .-++++++.|+.+ ..+.+||+.+.+-...
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 2 246889998443333322211101111222 2378888888765 5699999998765432
Q ss_pred eCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCC
Q 001159 1056 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~ 1109 (1135)
-. .+.. . ....++.. ++++++.|+.++ .+.+||+.+.+ |..
T Consensus 247 ~~----~p~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 292 (308)
T 1zgk_A 247 AP----MKHR---R-SALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE 292 (308)
T ss_dssp CC----CSSC---C-BSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred CC----CCCC---c-cceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--Eee
Confidence 11 1111 1 11112222 567888888653 57788887654 543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.12 Score=55.53 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=116.7
Q ss_pred ceEEEEeecCCCEEEEE-------------eCCeEEEEECCC--ccEE-EEEeC-----CCCCeEEEEEecC-CCc-EEE
Q 001159 843 SAACIALSKNDSYVMSA-------------SGGKVSLFNMMT--FKVM-TMFMS-----PPPAATFLAFHPQ-DNN-IIA 899 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~~-~~~~~-----h~~~v~~l~~sp~-~~~-~la 899 (1135)
....+++.|+|..++++ .+|.|.++|..+ .+.. ..+.+ .......+.+.++ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566778888777665 378999999873 2221 12332 1235677777652 232 344
Q ss_pred EE-eC--CCcEEEEEcccc----eeeEEecCc-CCCeEEEEEcCCCCeEEEEcC---C------------CcEEEEeCCC
Q 001159 900 IG-ME--DSSVQIYNVRVD----EVKTKLKGH-QNRITGLAFSPTLNALVSSGA---D------------AQLCMWSIDK 956 (1135)
Q Consensus 900 sg-~~--dg~v~iwd~~~~----~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~---D------------~~i~iwd~~~ 956 (1135)
++ .. +.+|.+|+++.+ ..+..+.+. -...+.+++.++|.++++... | ..=.+|.++.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44 33 467888877653 223344432 235789999999998887651 1 2233443333
Q ss_pred CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecC--Cce--eeccCCCCCCCCCEEEEEEee-C
Q 001159 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSK--LEC--SRSWSPKDALPAPISSAIYSC-D 1029 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~--~~~--~~~~~~~~~h~~~i~~~~~s~-d 1029 (1135)
++. . ...... ...+.++||||++.|+++ ..+.|..|++. +.. .+.+ .. ......+++.+ +
T Consensus 211 ~~~-~-~~~~~l-------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 211 NDV-R-VVAEGF-------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVT 277 (355)
T ss_dssp TCC-E-EEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTT
T ss_pred CeE-E-EeecCC-------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCC
Confidence 321 1 111111 235789999999988885 57889999982 322 1122 11 35568899999 5
Q ss_pred CCEEEEEeCC-CeEEEEECC--CceeeeeeC
Q 001159 1030 GLLVYAGFCD-GAIGVFDAE--TLRFRCRIG 1057 (1135)
Q Consensus 1030 ~~~l~~~~~d-g~I~vwd~~--~~~~~~~~~ 1057 (1135)
|++.+++..+ +.|..|+-+ .+..+.+++
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 9977766544 244444433 245555554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.43 Score=51.00 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=114.2
Q ss_pred CCeEEEEECCCccEEE-EEeCCCCCeEEEEEecCCCcEEEEEeC-----C------CcEEEEEccccee--eEEecCcCC
Q 001159 861 GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGME-----D------SSVQIYNVRVDEV--KTKLKGHQN 926 (1135)
Q Consensus 861 dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~lasg~~-----d------g~v~iwd~~~~~~--~~~l~~h~~ 926 (1135)
...+.+||..+.+-.. .+..+.......+... ++.+++.|+. . ..+..||..+++- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998876432 2222223334444444 6788888884 1 1278888887652 222221111
Q ss_pred CeEEEEEcCCCCeEEEEcCC--------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec---
Q 001159 927 RITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--- 995 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--- 995 (1135)
.-..+.+ ++++++.||.+ ..+.++|..+.+-. .+..... ......+...+++.++.++.
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPY-----VVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSS-----CCBSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCC-----cccceeEEEECCEEEEEeCCCCC
Confidence 1122222 66777777732 35888998875421 1111111 01112222345666666422
Q ss_pred ----CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC-----eEEEEECCCceeeeeeCCceeccccc
Q 001159 996 ----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLRFRCRIGPSAYIPTYA 1066 (1135)
Q Consensus 996 ----~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
..+.+||.....-....... .......+..-++++++.|+.++ .+.+||+.+.+-...-. .|..
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~- 233 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE- 233 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC-
T ss_pred CcccceEEEEeCCCCeEEECCCCC--CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc-
Confidence 46889998443333322211 11111122234778888887655 58899999875543211 1111
Q ss_pred cCCCCccEEEEecCCCCCEEEEEecCC--------------cEEEEecCCCccccCC
Q 001159 1067 VSNTAHPLVIAPHPSEPNQIALGMSDG--------------AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~l~sg~~dg--------------~v~~W~~~~~~~~~~~ 1109 (1135)
. ....++.. ++++++.|+.++ .+.+||+.+.+ |..
T Consensus 234 --r-~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 282 (315)
T 4asc_A 234 --R-SSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEG 282 (315)
T ss_dssp --C-BSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEE
T ss_pred --c-cceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhh
Confidence 1 11122232 457888888743 36677876654 543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.1 Score=56.37 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=102.7
Q ss_pred EEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce------
Q 001159 847 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 916 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------ 916 (1135)
...+.+|..++++.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 34567889999998999999998855555555543 23688999999 899999875 4579998887321
Q ss_pred ----e--eEEecC------cCCCeEEEEEcCC---CCeEEEEcCCCcEEEEeCCCCceeceeeeecCC---CCCCCCCCc
Q 001159 917 ----V--KTKLKG------HQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---GRQSPLVGE 978 (1135)
Q Consensus 917 ----~--~~~l~~------h~~~i~~l~~s~d---~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v 978 (1135)
. ...+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... +.......|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 0 112221 2567999999996 46899999999999999997332222 222111 111122578
Q ss_pred eEEEECCCCcEEEE-E--ecCeEEE
Q 001159 979 TKVQFHNDQTHLLV-V--HESQISV 1000 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~-~--~d~~v~v 1000 (1135)
.+++|.+++-.|.+ + .+|.|+-
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEE
Confidence 89999998866655 3 4566653
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.38 E-value=1.8 Score=48.43 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=77.1
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCcc------E-------EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------V-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~------~-------~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
...-.+.++|||+++++++ +.++.|+|++... . ....+ -.-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3344789999999999998 7899999997421 1 22222 234568899999 7765666668999
Q ss_pred EEEEEcccc----------eeeEEecCcCCCeEEEEE------cCCCCeEEEEc---CCCc----------EEEEeCCCC
Q 001159 907 VQIYNVRVD----------EVKTKLKGHQNRITGLAF------SPTLNALVSSG---ADAQ----------LCMWSIDKW 957 (1135)
Q Consensus 907 v~iwd~~~~----------~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~---~D~~----------i~iwd~~~~ 957 (1135)
|.-|++... ..+..+.-|-. +-.+.- .+||++|++.. .|.. -.+.|+...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 999999764 34555655543 222322 57899999874 4543 367777654
Q ss_pred c
Q 001159 958 E 958 (1135)
Q Consensus 958 ~ 958 (1135)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.19 Score=53.76 Aligned_cols=228 Identities=9% Similarity=-0.051 Sum_probs=111.0
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC-----C------CcEEEEEcCCCeee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQ 490 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~ 490 (1135)
+++.|+ ..+.+||..+++-.. ..+..........+...++. +++.|+. . ..+.+||..+++-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 344455 568999998865321 23322222233333344565 5666663 1 12778898877542
Q ss_pred e--eecCCCCCeeEEEeeccCCccEEEEEEcC--------CeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCCCEEEE
Q 001159 491 Y--TFEGHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 491 ~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~ 558 (1135)
. .+.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-. .......++. -+++.++.
T Consensus 81 ~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~ 154 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVI 154 (315)
T ss_dssp ECCCBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE
T ss_pred ECCCCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEE
Confidence 2 11111111112222 23566666642 458888887654322111 1111122222 35556666
Q ss_pred EecCC--CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeCCCC
Q 001159 559 CGTSK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 559 ~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
|+... .....+.+||+.+.+-...-.......-.+++.. +++.++.|+.++ .+.+||+.+.+-...-.....
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 233 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE 233 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc
Confidence 65411 1134689999988754332211111111122222 566777777543 588899988754433222211
Q ss_pred CCCcceEEEcCCCCEEEEEECCC--------------cEEEEEcCCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDN--------------GIKILANSDG 664 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~ 664 (1135)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 234 --r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 --RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp --CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred --ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 111122223567777777632 3667787665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.13 Score=64.26 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=125.5
Q ss_pred EEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceeeEEecCc
Q 001159 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGH 924 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 924 (1135)
+.-.+|..+.+|.-...++.|+|+++...++.+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 455678888888877889999999988777776533 3455556653 34565554 56799999974 3454555444
Q ss_pred ----CCCeEEEEEcCCCCeEEEEc-------CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 925 ----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 925 ----~~~i~~l~~s~d~~~l~s~~-------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
...|..-..+++.++++..| -.|.+.+|.++.+. -+...||........--...+....++.+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhhhheeccCCCCCCceEEEEE
Confidence 35688888899999988655 34778889887643 33344543211000000001122233323
Q ss_pred ----ecCeEEEEec-CC---c------eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 994 ----HESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 994 ----~d~~v~vwd~-~~---~------~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
..+++.|-++ .. . .+..+.+...-..-..++..|+.-..+..-+.-|.|+++|+.||.++..-+
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 2367888887 22 1 111122222223334577788888888888899999999999999887544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.15 Score=55.14 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCcEEEEEeCCCcEEEEEcccceeeEEecCc----CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceec--------
Q 001159 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK-------- 961 (1135)
Q Consensus 894 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h----~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~-------- 961 (1135)
++..++.+ .++.||.-++......+.+... -+.|..+..||+|++||..+. ..|.|-.+..+....
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 44444444 3466777776644334444322 236888999999999999874 468888877322111
Q ss_pred --eeeeecCCCCCCCCCCceEEEECCCC---cEEEE-EecCeEEEEecCC-c-eeeccC------CCCCCCCCEEEEEEe
Q 001159 962 --SRFIQAPAGRQSPLVGETKVQFHNDQ---THLLV-VHESQISVYDSKL-E-CSRSWS------PKDALPAPISSAIYS 1027 (1135)
Q Consensus 962 --~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~-~~d~~v~vwd~~~-~-~~~~~~------~~~~h~~~i~~~~~s 1027 (1135)
.+......-......+|..+.|+|-+ ..|++ ..|+.|++||+.. . ....+. ..+.....|.+++|+
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 11111110001113679999999975 36666 8999999999932 1 111111 112234789999999
Q ss_pred eCCCEEEEEe--CCCeEEEE
Q 001159 1028 CDGLLVYAGF--CDGAIGVF 1045 (1135)
Q Consensus 1028 ~d~~~l~~~~--~dg~I~vw 1045 (1135)
+++-.|...+ ..|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777754 78888653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.27 Score=52.40 Aligned_cols=234 Identities=7% Similarity=-0.024 Sum_probs=115.4
Q ss_pred cCCCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC----C-----CcEEEEE
Q 001159 417 GPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWD 483 (1135)
Q Consensus 417 spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d-----~~i~iwd 483 (1135)
.-++..++.|+.+ ..+.+||..+.+-.. ...+..-...- +++. -++. +++.|+. + ..+.++|
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3466777777742 358899988754221 11111111111 1222 2454 5666665 2 4688899
Q ss_pred cCCCeeee--eecCCCCCeeEEEeeccCCccEEEEEEcC-----CeEEEEeCcCCCceeE--ecCCCCcEEEEEEcCCCC
Q 001159 484 VVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 484 ~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~ 554 (1135)
+.+.+-.. .+........++.+ ++.+++.|+.+ ..+.+||..+.+-... +........++.+ +++
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 170 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL 170 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence 88765332 12211112222222 23666666543 3578888876543221 1111112222223 566
Q ss_pred EEEEEecCCCC-CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeC
Q 001159 555 RLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 555 ~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 628 (1135)
.++.|+.+... ...+.+||+.+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 66666643222 35689999987764332111111111122222 55666667654 5689999988654332221
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001159 629 DGGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 664 (1135)
.... .-.+++. -++++++.|+.+ ..+.+||..+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1111 1112222 356777777643 45778887665
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.18 E-value=1.7 Score=46.36 Aligned_cols=101 Identities=9% Similarity=0.080 Sum_probs=60.0
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCcc------------------EEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------------------VMTMFMSPPPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~------------------~~~~~~~h~~~v~~l~~sp~~~~~lasg 901 (1135)
.....++|+|+|.+.++-. ++.=.|--+..+. .+..+..+......++|.. +.++...
T Consensus 202 RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~ 279 (347)
T 3das_A 202 RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAG 279 (347)
T ss_dssp SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEE
T ss_pred CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecc
Confidence 3456889999888766543 3322222222221 1222222223567788874 5666666
Q ss_pred eCCCcEEEEEccccee----eEEecCcCCCeEEEEEcCCCCeEEEEc
Q 001159 902 MEDSSVQIYNVRVDEV----KTKLKGHQNRITGLAFSPTLNALVSSG 944 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~----~~~l~~h~~~i~~l~~s~d~~~l~s~~ 944 (1135)
...+.|....+..... ...+.+..+++.+|+..|||.++++.+
T Consensus 280 l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 280 LRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp STTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6667777777765432 223445557899999999998777754
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.04 E-value=2 Score=45.88 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=65.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC---CC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GL 421 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---~~ 421 (1135)
.-...+.++|.|||+ ++++-...|.|++++..+++.... - .+ ..++.........|+|+|+ +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v-----~-------~~-~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTEL-----G-------EV-PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-----E-------EC-TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeee-----c-------cc-CceeecCCCCceeeEeccccccCC
Confidence 345789999999998 677655489999998665543110 0 00 0112334567899999996 34
Q ss_pred eEEEE-e--CCCeEEEEEeCCCC----c---eeeee-Eee-cccCCEEEEEEecCCCeEEEEEEc
Q 001159 422 MLGVA-F--SKHIVHLYTYNPTG----E---LRQHL-EID-AHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 422 ~las~-~--~dg~i~iwd~~~~~----~---~~~~~-~l~-~h~~~v~~v~~s~d~~~~~l~s~~ 474 (1135)
+|.+. + .++.|.-|.+..+. . .+.+. .+. +.......|+|.|||. +.++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 44332 2 45567667766521 1 11111 121 1111345799999997 455543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.58 Score=50.02 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=109.4
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC----CC-------cEEEEEcCCCeee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQ 490 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~ 490 (1135)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37889988765322 12221112222333344565 6677773 11 2778888776543
Q ss_pred e--eecCCCCCeeEEEeeccCCccEEEEEEcC-------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 491 Y--TFEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 491 ~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
. .+.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.|+.
T Consensus 92 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 2 12111111222222 23667777654 34778887765433221111111111112245666666654
Q ss_pred CCC--CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCC
Q 001159 562 SKE--GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 562 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+.+ ....+.+||+.+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 211 134689999988764433221111111222222 45666667643 3577899887654332221111 1
Q ss_pred cceEEEcCCCCEEEEEECC--------------CcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~ 664 (1135)
....+..-++++++.|+.+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1112222356677777653 35777787665
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.53 Score=51.36 Aligned_cols=231 Identities=12% Similarity=0.078 Sum_probs=111.8
Q ss_pred CCCEEEEEe--CCeEEEEECCC--c--cEEEEEeCCCCCe-EEEEEecCCCcEEEEEeC-C---------CcEEEEEccc
Q 001159 852 NDSYVMSAS--GGKVSLFNMMT--F--KVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME-D---------SSVQIYNVRV 914 (1135)
Q Consensus 852 dg~~la~~~--dg~i~vwd~~~--~--~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~~ 914 (1135)
++++++.|+ ...+.++|+.+ . +.+..+.. .... .+++.. ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~-~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG-GPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT-CCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC-CcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 777777776 46799999864 2 22222220 1111 223332 5678888876 2 4689999887
Q ss_pred cee--eEEecCcCCCeEEEEEcCCCCeEEEEcCC---------------------------------------CcEEEEe
Q 001159 915 DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD---------------------------------------AQLCMWS 953 (1135)
Q Consensus 915 ~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------------------------------~~i~iwd 953 (1135)
.+= +..+. ........+...++++++.|+.+ ..+.+||
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 642 22222 01111111222578888888865 4688899
Q ss_pred CCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-e------cCeEEEEec--CCceeeccCCCCCCCCCEEEE
Q 001159 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H------ESQISVYDS--KLECSRSWSPKDALPAPISSA 1024 (1135)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~------d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~ 1024 (1135)
..+.+-.. +....... ..-..++. -++++++.+ . ...+.+||+ ....-................
T Consensus 175 ~~~~~W~~---~~~~p~~~---~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSY---AGESPWYG---TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEE---EEECSSCC---CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEE---CCCCCCCC---cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 88755222 11111000 01022222 255665553 2 235677775 333322222111001111222
Q ss_pred EEeeCCCEEEEEeCC----------------------CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCC
Q 001159 1025 IYSCDGLLVYAGFCD----------------------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1025 ~~s~d~~~l~~~~~d----------------------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1135)
+...++++++.|+.+ ..+.+||+.+.+-... ..+|.. . ....++.+ +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~---r-~~~~~~~~---~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG---R-AYGVSLPW---N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC---C-BSSEEEEE---T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC---c-ccceeEEe---C
Confidence 344577888888742 2578899987654332 111111 1 11223333 5
Q ss_pred CCEEEEEecCC------cEEEEecCCCc
Q 001159 1083 PNQIALGMSDG------AVHVVEPSDAE 1104 (1135)
Q Consensus 1083 ~~~l~sg~~dg------~v~~W~~~~~~ 1104 (1135)
+++++.|+.++ .|.+.++.+.+
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 67888898764 34555676655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.8 Score=57.45 Aligned_cols=99 Identities=5% Similarity=0.053 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
..+|.+.|+..+..+..-.-. -.+.-++|..+.++.-. ..++.|+|+.+...+....... .|.-=.|-. .+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis-~~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 117 (1630)
T ss_pred CceEEEEECCCCCCccccccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecC-CC
Confidence 447888998876654222111 12344688777666653 6799999999988887776543 343334433 33
Q ss_pred EEEEEECCCcEEEEEcCCCchhhhhcccc
Q 001159 646 LLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (1135)
.|+..+. ..|.-|++.....+.+.+..|
T Consensus 118 ~l~lVT~-~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred eeEEEcC-CeEEEeccCCCCccHHHHhcc
Confidence 5555544 489999997654555555544
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.87 E-value=2.2 Score=44.86 Aligned_cols=175 Identities=12% Similarity=0.083 Sum_probs=105.0
Q ss_pred EEEeecCCCEEEEEe--C-------------CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe----CCCc
Q 001159 846 CIALSKNDSYVMSAS--G-------------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM----EDSS 906 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~--d-------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----~dg~ 906 (1135)
+--++++|.+|+... + ..|+..++...+... +.. .. +..|++ ++++|+... .+..
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999998886 2 257888887665322 321 11 236788 677777765 3345
Q ss_pred EEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcC-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 907 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
|+.-++... ....+..+.. .+|+++++.|.-.+. ...|..-++..+... .+ ..+. ....++|
T Consensus 131 Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l--~~~~-------~~~~~~P 193 (302)
T 3s25_A 131 LYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LF--YDCN-------CYKPVVL 193 (302)
T ss_dssp EEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EE--ECSC-------EEEEEEE
T ss_pred EEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EE--eCCC-------ccceeee
Confidence 555566533 3445554433 456788988886665 567888888765532 12 1111 1234679
Q ss_pred CCcEEEEEe--c-CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe--CCCeEEEEECCCc
Q 001159 986 DQTHLLVVH--E-SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETL 1050 (1135)
Q Consensus 986 dg~~l~~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~--~dg~I~vwd~~~~ 1050 (1135)
++++|+.+. + ..|..-++.+.....+.. ..+ ..|+|++++|+-++ ..+.|..-+++..
T Consensus 194 ~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 194 DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEECSSSCCCEECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 999998853 2 356666665555444432 233 34889999887552 3466777777643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.055 Score=52.69 Aligned_cols=144 Identities=13% Similarity=-0.013 Sum_probs=84.0
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccE------EEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV------MTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~--~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
..++.++|+|+|.+.++ .+|.+.-.+..+... -..+- +-. .-.++.|.| +|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 35669999999998888 888877777654221 11111 011 137899999 8877776 56999888764
Q ss_pred cceee------EEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceece----eeeecCCCCCCCCCCceEEE
Q 001159 914 VDEVK------TKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQ 982 (1135)
Q Consensus 914 ~~~~~------~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~ 982 (1135)
+...- ..+ ..-=..+..|.|.|+|.+.+.. |+.+.-+...+...... ..+..... ..-..+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~ 188 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLF 188 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEE
Confidence 32111 011 1111457999999999888777 77654333332111000 01110000 1235577
Q ss_pred ECCCCcEEEEEecCeE
Q 001159 983 FHNDQTHLLVVHESQI 998 (1135)
Q Consensus 983 ~s~dg~~l~~~~d~~v 998 (1135)
|.++|.+.++. ++.+
T Consensus 189 f~~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 189 FSSVGTLFGVQ-GGKF 203 (236)
T ss_dssp ECTTSCEEEEE-TTEE
T ss_pred ECCCCcEEEEe-CCeE
Confidence 99999888887 6643
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.012 Score=46.85 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHhcC
Q 001159 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCG 59 (1135)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1135)
++|+.+-|++||..+||.+++.+|.+|.++..+ ...-..-.++-.|..++++=++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 468999999999999999999999999998875 1223455778888887665433
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.17 Score=54.01 Aligned_cols=200 Identities=8% Similarity=0.024 Sum_probs=106.0
Q ss_pred cEEEEEeCCCcEEEEEcccceeeEEecCc-CCCeEEEEE--c-CCCCeEEEE-cCCCcEEEEeCCCCceeceeeeecCCC
Q 001159 896 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--S-PTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 970 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~i~~l~~--s-~d~~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~ 970 (1135)
.+++.++.||.|+-+|..+|+.+..+... ..++....- . .++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888653 122222110 0 123333333 589999999988775332211111110
Q ss_pred CCCCCCCceE---EEE------CCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCC----CCEEEEEEe-----eCCC
Q 001159 971 RQSPLVGETK---VQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1031 (1135)
Q Consensus 971 ~~~~~~~v~~---~~~------s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~----~~i~~~~~s-----~d~~ 1031 (1135)
. .++.. ... +.++..++.+.++.+...|. +++.+..+....... ....|.... ..+.
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp T----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred c----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 01110 001 24454444478999999999 888887775432110 011111111 1235
Q ss_pred EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEE--EEecCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001159 1032 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV--IAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~ 1107 (1135)
.|+.+..+..+.+.+ .+|+ +..+....+.+.. . ..++. ...+ .|+.+ +.++.||.|.-.|..+|+..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~-~~~~~~~~~~s-~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---L-DVPLALQNTFS-KDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---T-THHHHTTCSSC-SSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc---c-ccccccccccc-cCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 4564 3222211111110 0 00000 0001 14555 457899999999999999888
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.20 E-value=2.5 Score=47.52 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC--CCCCCCceEEEECCC---CcEEEEE--e---
Q 001159 925 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR--QSPLVGETKVQFHND---QTHLLVV--H--- 994 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---g~~l~~~--~--- 994 (1135)
-...++|+|.|||+++++-...+.|++++..+++... ........ .........++|+|| +.+|.++ .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457899999999988876554578888765544221 11111110 011256679999996 5555553 2
Q ss_pred ---------cCeEEEEecCC--------ceee-ccCCCCCCCCCEEEEEEeeCCCEEEEEe
Q 001159 995 ---------ESQISVYDSKL--------ECSR-SWSPKDALPAPISSAIYSCDGLLVYAGF 1037 (1135)
Q Consensus 995 ---------d~~v~vwd~~~--------~~~~-~~~~~~~h~~~i~~~~~s~d~~~l~~~~ 1037 (1135)
...|.-|+.+. +.+. .+.....| ....|+|.|||.++++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEEC
Confidence 23455555421 1111 12222223 478999999999777654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.4 Score=47.06 Aligned_cols=192 Identities=10% Similarity=0.043 Sum_probs=95.9
Q ss_pred eecCCCEEEEEe-C----C-------eEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEeCC-------CcEE
Q 001159 849 LSKNDSYVMSAS-G----G-------KVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMED-------SSVQ 908 (1135)
Q Consensus 849 ~s~dg~~la~~~-d----g-------~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~~d-------g~v~ 908 (1135)
...+++.++.|+ . + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 345777777776 1 1 1778888765432211111111 1222322 56788888764 3588
Q ss_pred EEEcccceee--EEecCcCCCeEEEEEcCCCCeEEEEcCC------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceE
Q 001159 909 IYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 980 (1135)
Q Consensus 909 iwd~~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 980 (1135)
+||..+.+-. ..+......-.++. .++++++.|+.+ ..+.++|+.+.+-.. +...... ..-..
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~----r~~~~ 201 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD---LAPMKTP----RSMFG 201 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE---ECCCSSC----CBSCE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE---CCCCCCC----cccce
Confidence 8888876422 22221111111222 467777777642 358899988765221 1111100 11112
Q ss_pred EEECCCCcEEEEE-ec-----CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC--------------C
Q 001159 981 VQFHNDQTHLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------------G 1040 (1135)
Q Consensus 981 ~~~s~dg~~l~~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d--------------g 1040 (1135)
++. -+++.++.+ .+ ..+.+||.....-..+..... ......+...++++++.|+.+ .
T Consensus 202 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 202 VAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ--ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS--CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC--cccceEEEEECCEEEEECCeeccCCCCceeccceee
Confidence 222 356666664 22 457789984333332222111 111112233567888888764 3
Q ss_pred eEEEEECCCceeee
Q 001159 1041 AIGVFDAETLRFRC 1054 (1135)
Q Consensus 1041 ~I~vwd~~~~~~~~ 1054 (1135)
.+.+||+.+.+-..
T Consensus 279 ~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 279 DIWKYEDDKKEWAG 292 (318)
T ss_dssp CEEEEETTTTEEEE
T ss_pred eEEEEeCCCCEehh
Confidence 58889998876554
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.08 Score=51.53 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEccccee------eEEec--CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV------KTKLK--GHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.++.++|+| ++.+.++ .+|.++-.+..++.. -..+- +-.. -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8887776 677766666544211 11110 1111 478999999998888 56988878764
Q ss_pred CCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEE
Q 001159 956 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 1000 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v 1000 (1135)
+.......-.....+.. .-..+..+.|.|+|.+.++. |+.+.-
T Consensus 116 ~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred cCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe-CCcEEe
Confidence 32211110000000000 00356899999999999998 887543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.91 E-value=4.4 Score=42.46 Aligned_cols=180 Identities=8% Similarity=0.052 Sum_probs=101.0
Q ss_pred EEEEecCCCeEEEEEecc-------------ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 351 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+--++++|++|..+...+ ..|+..++..++... +... .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 456789999877776543 466767776654321 1111 123678
Q ss_pred CCCCeEEEEe--CC--CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 418 PDGLMLGVAF--SK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 418 pd~~~las~~--~d--g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+++++|+-.. .+ ..|...++++.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 33 345555665432 22 3333432 467888985 2334334678888887766544333
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+ ... ..++|.+ .+|+-...++ .|..-+++.... ..+.. ..+ ..|+|++++|+.+... +...|..
T Consensus 184 ~~---~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCV 250 (302)
T ss_dssp CS---CEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECS--SSCEEEE
T ss_pred CC---Ccc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECC--CCcEEEE
Confidence 32 222 2355654 5666555433 555556654443 23322 223 3478889999866421 2356777
Q ss_pred EECCC
Q 001159 572 WNESE 576 (1135)
Q Consensus 572 wd~~~ 576 (1135)
-++..
T Consensus 251 ~~~DG 255 (302)
T 3s25_A 251 VKNDG 255 (302)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 77653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.97 Score=48.08 Aligned_cols=115 Identities=8% Similarity=-0.035 Sum_probs=68.0
Q ss_pred CeEEEEeCCCeEEEEEeCCCCceeeeeEeecc-cCCEEEEEE--ecCCCeEEEEEE-cCCCcEEEEEcCCCeeeeeecC-
Q 001159 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAF--AHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG- 495 (1135)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~--s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~- 495 (1135)
..+++++.||.|.-.|..+|+..- .+... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W---~~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIW---SIEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEE---EECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---EecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 367788888888888888876543 22221 112211110 011222 33333 6899999999888865544321
Q ss_pred ---CCCCeeEEEeeccC-------CccEEEEEEcCCeEEEEeCcCCCceeEecCC
Q 001159 496 ---HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 496 ---h~~~v~~i~~~~~~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 540 (1135)
...++.. .-.|-- .+..+++|+.+|++...|+.+++.+..+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1222221 100100 2368999999999999999999998877654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.80 E-value=1.3 Score=48.10 Aligned_cols=192 Identities=5% Similarity=-0.064 Sum_probs=94.2
Q ss_pred CCCEEEEEeC-----------CeEEEEECCCccEEEEEeCC-CCCe-EEEEEecCCCcEEEEEeCC--------------
Q 001159 852 NDSYVMSASG-----------GKVSLFNMMTFKVMTMFMSP-PPAA-TFLAFHPQDNNIIAIGMED-------------- 904 (1135)
Q Consensus 852 dg~~la~~~d-----------g~i~vwd~~~~~~~~~~~~h-~~~v-~~l~~sp~~~~~lasg~~d-------------- 904 (1135)
++++++.|+. ..+.+||..+.+-...-... .... .+++. . ++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhc
Confidence 6666666642 35899998875422211111 2222 22222 3 67888888865
Q ss_pred -------------------------CcEEEEEcccce--eeEEecCcCCCeEEEEEcCCCCeEEEEcCC------CcEEE
Q 001159 905 -------------------------SSVQIYNVRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCM 951 (1135)
Q Consensus 905 -------------------------g~v~iwd~~~~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~i 951 (1135)
..+.+||..+.+ .+..+......-.+++. -++++++.++.+ ..+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEE
Confidence 478999988754 33333211111022222 266777776642 34677
Q ss_pred EeC--CCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe-c----------------------CeEEEEecCC-
Q 001159 952 WSI--DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------------------SQISVYDSKL- 1005 (1135)
Q Consensus 952 wd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----------------------~~v~vwd~~~- 1005 (1135)
+|+ .+.+ ...+....... ....+.+...++++++.++ + ..+.+||...
T Consensus 222 ~d~d~~~~~---W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~ 295 (357)
T 2uvk_A 222 LDFTGNNLK---WNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG 295 (357)
T ss_dssp EECC---CE---EEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred EEecCCCCc---EEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC
Confidence 776 3322 11111111000 1112223344566666642 1 2577899832
Q ss_pred --ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC------eEEEEECCCceeeeeeC
Q 001159 1006 --ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG------AIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 1006 --~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg------~I~vwd~~~~~~~~~~~ 1057 (1135)
..+..+.... ....+...++++++.|+.++ .|.++++++++.+....
T Consensus 296 ~W~~~~~~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 296 KWDKSGELSQGR-----AYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp -CEEEEECSSCC-----BSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred ceeeCCCCCCCc-----ccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 2222222211 11223446888888888653 36667888887775544
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.64 E-value=11 Score=42.18 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=112.8
Q ss_pred CCCEEEEEe--CCeEEEEECCCccEEEEEeCC-CCCeEEEEEe--cCCCcEEEEEeC-------CCcE---------EEE
Q 001159 852 NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFH--PQDNNIIAIGME-------DSSV---------QIY 910 (1135)
Q Consensus 852 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s--p~~~~~lasg~~-------dg~v---------~iw 910 (1135)
||++|.+-+ +..|...+++..++-+.+.-+ ...+..++|- | ...+++.++. ||.. -+|
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 889999988 688999999999887776543 4568888886 6 5667776663 2321 111
Q ss_pred ---EcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC---------------cEEEEeCCC-------Cc--eecee
Q 001159 911 ---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA---------------QLCMWSIDK-------WE--KLKSR 963 (1135)
Q Consensus 911 ---d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~---------------~i~iwd~~~-------~~--~~~~~ 963 (1135)
|..+.+....+.- .+........++|++.++.+-+. .+.++++.. ++ .+...
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 1222221111110 12233345577788877765331 255555431 11 01100
Q ss_pred eeecCCCCC------------CCCCCceEEEECCCCcEEEEE--ecCeEEEEecC-Cce-----e----eccCCCCCCCC
Q 001159 964 FIQAPAGRQ------------SPLVGETKVQFHNDQTHLLVV--HESQISVYDSK-LEC-----S----RSWSPKDALPA 1019 (1135)
Q Consensus 964 ~~~~~~~~~------------~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~-~~~-----~----~~~~~~~~h~~ 1019 (1135)
-+....+.. ........+.++|||++++++ -+.++.|+|++ ... + ........-.-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 001111111 000234578899999999996 47889999983 111 0 00000011144
Q ss_pred CEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 1020 PISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
.....+|.++|.-..+---|..|.-|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 5688999999965566668999999999864
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.74 E-value=14 Score=40.55 Aligned_cols=260 Identities=11% Similarity=-0.004 Sum_probs=118.3
Q ss_pred CCceEEEEeec--CCCEEEEEeCC----eEEEEECCCccEEEEEeC--------------CCCCeEEEEEecCC-CcEEE
Q 001159 841 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFMS--------------PPPAATFLAFHPQD-NNIIA 899 (1135)
Q Consensus 841 ~~~i~~l~~s~--dg~~la~~~dg----~i~vwd~~~~~~~~~~~~--------------h~~~v~~l~~sp~~-~~~la 899 (1135)
...|.++++.| ++.+.+.+..| .|...+ ..++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 56789999998 56666665554 343332 22322222211 11257889998633 44555
Q ss_pred EEeCCCcEEEEEcccceeeEEec---C----------------cCCCeEEEEEcCC-CCeEEEEcCCCcEEEEeCCCCce
Q 001159 900 IGMEDSSVQIYNVRVDEVKTKLK---G----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEK 959 (1135)
Q Consensus 900 sg~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~i~~l~~s~d-~~~l~s~~~D~~i~iwd~~~~~~ 959 (1135)
.++..+.|...+ +.++.-..+. . ....|.+|++.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 566566555443 2222211111 1 1235789999873 34444444344343332 22221
Q ss_pred eceeeeec-CCCCC-C-----CCCCceEEEECCC-CcEEEEEecCeEEEEecCCceeeccCCCCCC--CCCEEEEEEeeC
Q 001159 960 LKSRFIQA-PAGRQ-S-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSCD 1029 (1135)
Q Consensus 960 ~~~~~~~~-~~~~~-~-----~~~~v~~~~~s~d-g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h--~~~i~~~~~s~d 1029 (1135)
...+.. ..... . ....+..++++|+ ...|.++..+.|...+-.++....+...... ...+.+++++|.
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCC
Confidence 111110 00000 0 0024788999986 3555555555565554444433333211100 134667888763
Q ss_pred -CCEEEEEeC-----------CCeEEEEECCC-ceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEE
Q 001159 1030 -GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1030 -~~~l~~~~~-----------dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~ 1096 (1135)
...|+++.. ++...+|.... |+.-..+.. .+|....-......+++++|.++..|..++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 334444432 23344555443 333332221 11111000001112466677555667777666654
Q ss_pred EEecCCCccccCC
Q 001159 1097 VVEPSDAELKWGG 1109 (1135)
Q Consensus 1097 ~W~~~~~~~~~~~ 1109 (1135)
|...++...|+.
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 444444455654
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=92.33 E-value=23 Score=42.14 Aligned_cols=247 Identities=8% Similarity=0.020 Sum_probs=125.1
Q ss_pred EEE-EecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 351 SMD-FHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 351 ~v~-~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.+. ++|++++++++-|..| .|+++|+.+++.+.. .|. ...+... + .......++|. |++.+..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~-------~--~~~~~~~~~W~-d~~~~~~ 200 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK-------L--LEGKFTYPTWI-NKDTIIF 200 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC-------B--CCEETCCEEEE-ETTEEEE
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc-------c--cccccceeeEE-CCCEEEE
Confidence 444 8899987666655444 799999999987642 111 0000000 0 00012334676 3333333
Q ss_pred Ee-----------CCCeEEEEEeCCCCceeeeeEeecccCCE-EEEEEecCCCe---EEEEEEcC---CCcEEEEEcCC-
Q 001159 426 AF-----------SKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQ---LCIVTCGD---DKMIKVWDVVA- 486 (1135)
Q Consensus 426 ~~-----------~dg~i~iwd~~~~~~~~~~~~l~~h~~~v-~~v~~s~d~~~---~~l~s~~~---d~~i~iwd~~~- 486 (1135)
+. ....|+.|.+.+...-. ...+.+....+ .+...+++++. ..+++.+. ...+.+.|...
T Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 279 (711)
T 4hvt_A 201 NLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK 279 (711)
T ss_dssp CCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred EeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence 32 13468888887653211 11344433333 34555677764 13555432 24566666553
Q ss_pred -CeeeeeecCCCCCeeEEEeeccCCccEEEEE----------EcCCeEEEEeCcCCC-------ceeE-ecC-CCCcEEE
Q 001159 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRVD-YDA-PGNWCTM 546 (1135)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~i~iwd~~~~~-------~~~~-~~~-~~~~i~~ 546 (1135)
++. ..+...... .+..+. ++.+++.. ...+.|...|+.+.. .... +.. ....+..
T Consensus 280 ~~~~-~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 280 NLKL-QKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF 354 (711)
T ss_dssp SCEE-EECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred CCcc-eEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence 432 223211111 111222 22444422 246778899987631 2222 322 3446778
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEE-eecccCCceeEEEecCCCCEEE-EEe---CCCeEEEEECC
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFL-AAG---DEFQIKFWDMD 618 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~i~~s~~~~~l~-~~~---~dg~i~iwd~~ 618 (1135)
+.+..+ ..+++... ++...|.++|+.++. .... +.......+.....++++..++ +.+ .-+.+..+|+.
T Consensus 355 ~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 355 ISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 888876 34444432 445678899887775 2333 3322222566666777765444 333 44678888887
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.52 E-value=21 Score=39.95 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEee---------cccCCEEEEEEecC
Q 001159 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP 464 (1135)
Q Consensus 410 ~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d 464 (1135)
.-..|+|.|||. .|+++...|.|++++.........+..+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 356899999996 56667788999999754321111111111 11456889999996
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=7.1 Score=46.68 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=103.2
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCccEEEEE-e-----CCCC--CeEEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001159 851 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-----SPPP--AATFLAFHPQDNNIIAIGMEDS------SVQIYN 911 (1135)
Q Consensus 851 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~-~-----~h~~--~v~~l~~sp~~~~~lasg~~dg------~v~iwd 911 (1135)
.++..++.|+ + ..+.+||..+.+-...- . .... .-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 45889998876533322 1 1111 223344432 467888887543 588899
Q ss_pred cccce--eeEEecCcCCCeEEEEEcCCCCeEEEEcCCC--cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC-
Q 001159 912 VRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND- 986 (1135)
Q Consensus 912 ~~~~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 986 (1135)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+..-. .+...............+++..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~---~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK---DVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEE---ECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceE---EccCCCCCCCcccceeEEEEeCCC
Confidence 88753 222222111111 223324888888888654 6899998876521 11110000000012234555655
Q ss_pred CcEEEEEe---c-----CeEEEEecCCce------eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC--------CeEEE
Q 001159 987 QTHLLVVH---E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIGV 1044 (1135)
Q Consensus 987 g~~l~~~~---d-----~~v~vwd~~~~~------~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d--------g~I~v 1044 (1135)
++.++.++ + +.+.+||+.... .............-.+++...++++++.|+.+ ..|.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 55666642 2 458899983222 11110000001111133334448888888753 45999
Q ss_pred EECCCceee
Q 001159 1045 FDAETLRFR 1053 (1135)
Q Consensus 1045 wd~~~~~~~ 1053 (1135)
||+.+.+-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999988765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=13 Score=44.39 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=100.2
Q ss_pred cCCCeEEEEEEcCC----CcEEEEEcCCCeeeeee-c-------CCCCCeeEEEeeccCCccEEEEEEcCC------eEE
Q 001159 463 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-------GHEAPVYSVCPHHKESIQFIFSTAIDG------KIK 524 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~-~-------~h~~~v~~i~~~~~~~~~~l~s~s~dg------~i~ 524 (1135)
.++. +++.||.+ ..+.+||+.+++-...- . .......++.+ +. ++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~-~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SR-NNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TT-TTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-cc-CCEEEEEcCCCCCCCccccEE
Confidence 3455 56666643 46888898876533221 1 11111222222 10 336777776543 477
Q ss_pred EEeCcCCCceeEecCCCC-cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee---cc-cCCceeEEEecCC
Q 001159 525 AWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GF-RKRSLGVVQFDTT 599 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~-~~~~v~~i~~s~~ 599 (1135)
+||..+.+-...-..... .-.+++...+++.++.||.+... .+.+||+.+..-...-. .. ......++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 888776433221111111 11223332477888888764433 79999998876543221 11 1112233555555
Q ss_pred -CCEEEEEeC--C-----CeEEEEECCCCce-----EEEEeCC--CCCCCcceEEEcCCCCEEEEEEC--------CCcE
Q 001159 600 -RNRFLAAGD--E-----FQIKFWDMDNMNM-----LTTVDAD--GGLPASPRLRFNKEGSLLAVTTS--------DNGI 656 (1135)
Q Consensus 600 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--------dg~i 656 (1135)
+..++.||. + ..+.+||+.+.+. ...+... ... .-.+++...++++++.|+. ...+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 556666664 2 4688999988762 2222111 111 1123333344777777774 3458
Q ss_pred EEEEcCCC
Q 001159 657 KILANSDG 664 (1135)
Q Consensus 657 ~iwd~~~~ 664 (1135)
.+||..+.
T Consensus 629 ~~yd~~t~ 636 (695)
T 2zwa_A 629 ISLDPLSE 636 (695)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 88888766
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=88.97 E-value=19 Score=37.12 Aligned_cols=183 Identities=13% Similarity=0.033 Sum_probs=95.1
Q ss_pred ceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec
Q 001159 843 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
.|..++...+-. ++. .||.|..|-......+..-..-...|..++... ...+.-. ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 445555433322 222 377777776543211111111124677777764 3344445 9999999765422121111
Q ss_pred CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 923 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
.....|..++...+...+ .. |+.|..|-......+.. .... ...|..++.-.+...++ .++.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg~---p~~~-----~~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTTV---PAEA-----QSGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTSC---CGGG-----GSSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCCC---ceec-----CCCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 223468787765443333 23 79999997765332211 0000 13466666555544444 699999998
Q ss_pred c-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 1003 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 1003 ~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
. ....+..-.. ....|..++...+..++++ ||.|+.|=....
T Consensus 205 ~n~~gqlg~p~~---~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPTE---ALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCGG---GGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCcc---cCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 7 2222211111 1345777775554443333 999999987653
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.85 E-value=30 Score=37.68 Aligned_cols=204 Identities=11% Similarity=0.074 Sum_probs=103.1
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-----------eeeEEecCc-CCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-----------EVKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-----------~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
.+..++++. +....+.-+.||.|+.|-.... .....+..- ...|..|+.. ....+....||.|..
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 466677877 6777777889999999964321 111122211 2257777664 344555667999999
Q ss_pred EeCCCCce---------eceeeeecCCCCCCCCCCceEEEECCC-CcEEEEEecCeEEEEec-C-Cce----------ee
Q 001159 952 WSIDKWEK---------LKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLVVHESQISVYDS-K-LEC----------SR 1009 (1135)
Q Consensus 952 wd~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~d~~v~vwd~-~-~~~----------~~ 1009 (1135)
|-.....+ .....+....+ ..+..++.... ...++...++.|..|-. . ++. ..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~-----~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 257 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQG-----HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM 257 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE
T ss_pred eCCCCCCCcCCCCCcccccceEecccCC-----CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccE
Confidence 97543211 11111222211 23555555442 33445578899999875 1 110 00
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC-Cceecccccc-CCCCccEEEEecCCCCCEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG-PSAYIPTYAV-SNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
.+.... ...|..++...+ +.++-..||.|+.|=....-.+..-. .....|.... -....++.++. .....+
T Consensus 258 ~v~~~~--~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~ 330 (389)
T 3kci_A 258 KIDSLT--GLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCV 330 (389)
T ss_dssp ECGGGT--TSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEE
T ss_pred EecccC--CCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEE
Confidence 111111 224666654433 33444689999999865422111000 0000011000 00122333433 334556
Q ss_pred EEecCCcEEEEecCC
Q 001159 1088 LGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~ 1102 (1135)
.-..||.|+.|-...
T Consensus 331 al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 331 CCTEDGEVYTWGDND 345 (389)
T ss_dssp EEETTCCEEEEECCT
T ss_pred EECCCCCEEEeeCCC
Confidence 668999999998754
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=88.57 E-value=24 Score=36.30 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=112.5
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.|..++-... +.++. . ||.|..|-......+.. +. .....|..|+...+- .++. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~---------------p~----~~~~~i~~ia~G~~h-s~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM---------------PA----ATQSGVDAIAAGNYH-SLAL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC---------------CG----GGGSCCCEEEECSSE-EEEE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC---------------Cc----cCCCCEEEEEeCCCE-EEEE-E
Confidence 4555554433 33444 4 88999997665433321 00 012246666665433 2333 4
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
||.|..|-.....++.... .-...|..++...+- .+.-. ||.|..|-....-.+-.-......|..++...
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 8999999876544332111 113468777776542 23334 89999998654222211111234577776432
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1135)
. ..++ -. ||.+..|-.......-.-......|..++...+...++ . ++.|+.|-......+. +....
T Consensus 151 ~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg-~p~~~ 217 (282)
T 3qhy_B 151 Y---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTT-VPTEA 217 (282)
T ss_dssp S---EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTC-CCGGG
T ss_pred C---EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCC-CCccc
Confidence 1 2333 34 79999996654333211111123566665544322222 2 6778888654322111 11111
Q ss_pred CCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 588 ~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
...|..++..... .++-. ||.|+.|-....
T Consensus 218 ~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 218 LSGVSAIASGEWY--SLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GSSCCEEEECSSC--EEEEE-TTEEEEESTTCC
T ss_pred CCCceEEEcCCCE--EEEEE-CCEEEEecCCCC
Confidence 1246666655433 33333 899999976653
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=86.78 E-value=29 Score=42.97 Aligned_cols=42 Identities=24% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 1018 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1018 ~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
...+.+++..++..++++-+.|+++|||++.+++++.+....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 346778888889999999999999999999999999887654
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=84.86 E-value=48 Score=39.37 Aligned_cols=245 Identities=10% Similarity=0.040 Sum_probs=121.2
Q ss_pred eEEEE-EcCCCCeEEEEe-C----CCeEEEEEeCCCCceeeeeEeecccC------CEEEEEEecCCCeEEEEEE-----
Q 001159 411 VNRCV-WGPDGLMLGVAF-S----KHIVHLYTYNPTGELRQHLEIDAHVG------GVNDIAFAHPNKQLCIVTC----- 473 (1135)
Q Consensus 411 V~~v~-~spd~~~las~~-~----dg~i~iwd~~~~~~~~~~~~l~~h~~------~v~~v~~s~d~~~~~l~s~----- 473 (1135)
...+. ++||+++++.+- . -..++++|+.+++.+..... ..-+. ....++|..++. ++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~ 207 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKN 207 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTT
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCC
Confidence 34455 899999888762 2 23699999999765431111 00000 113358874443 44432
Q ss_pred -----cCCCcEEEEEcCCCe--eeeeecCCCCCee-EEEeeccCCcc---EEEEEEcC---CeEEEEeCcCCCc-eeEec
Q 001159 474 -----GDDKMIKVWDVVAGR--KQYTFEGHEAPVY-SVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLGS-RVDYD 538 (1135)
Q Consensus 474 -----~~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~i~~~~~~~~~---~l~s~s~d---g~i~iwd~~~~~~-~~~~~ 538 (1135)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.|.+.... ...+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 123578888876542 2233444333332 23333443222 35554422 3455556543222 23333
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCC------CCCCeEEEEECCCCe-------EEEE-eecccCCceeEEEecCCCCEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
...... +..+.++.+++....+. -..+.|...|+.++. ..+. +....+..+..+.+..+ ..++
T Consensus 288 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 333211 23344555555332110 136678888887642 1222 43334446778888865 5666
Q ss_pred EEeCCCe--EEEEECCCCc-eEEE-EeCCCCCCCcceEEEcCCCCE-EEEEEC---CCcEEEEEcC
Q 001159 605 AAGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGSL-LAVTTS---DNGIKILANS 662 (1135)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iwd~~ 662 (1135)
+...++. ++++++.+++ .... +.... ...+.....++++.. +++.+. -+.+..+|..
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666664 6677776664 2233 33322 124555566666543 343333 3556666654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=84.83 E-value=54 Score=36.53 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=33.6
Q ss_pred ceeEEEecCCCC-EEEEEeCCCeEEEEECCCC---ceEEEEeCC-------CCCCCcceEEEcCC
Q 001159 590 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM---NMLTTVDAD-------GGLPASPRLRFNKE 643 (1135)
Q Consensus 590 ~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~~-------~~~~~v~~~~~~~~ 643 (1135)
.-..++|.|+|. +++++...|.|++++.... ..+..+... ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456799999996 5666778899999975432 122222110 01234567888886
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=48 Score=35.57 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=92.8
Q ss_pred cEEEEEcCCC--eeeeeecC------CCCCeeEEEee-c--c--CCccEEE-EEEcCCeEEEEeCcCCCceeEec----C
Q 001159 478 MIKVWDVVAG--RKQYTFEG------HEAPVYSVCPH-H--K--ESIQFIF-STAIDGKIKAWLYDYLGSRVDYD----A 539 (1135)
Q Consensus 478 ~i~iwd~~~~--~~~~~~~~------h~~~v~~i~~~-~--~--~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~----~ 539 (1135)
.|.+||+.++ +.++++.- ....+..+.+. . . .++.+++ +=+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4677888887 77766532 23457788877 2 1 1123443 33457889999998876554331 1
Q ss_pred C--------------CCcEEEEEEcCC----CCEEEEEecCCCCCCeEEEEECC-----C---CeEEEEeecccC--Cce
Q 001159 540 P--------------GNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNES-----E---GAIKRTYSGFRK--RSL 591 (1135)
Q Consensus 540 ~--------------~~~i~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~-----~---~~~~~~~~~~~~--~~v 591 (1135)
. ...+..++++|+ ++.|+...... -++|.+. . ...++.+ +..+ ..-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEe-eecCCCCCc
Confidence 1 136788999998 78887665321 2233222 1 1112222 2221 123
Q ss_pred eEEEec-CCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 592 GVVQFD-TTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 592 ~~i~~s-~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
...+++ .+|..+++--....|..|+..+. +....+........+..+.+..+|.+.+..
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 345675 56766666678889999998751 233343332233455666666665544443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=82.19 E-value=58 Score=34.94 Aligned_cols=172 Identities=10% Similarity=0.143 Sum_probs=94.5
Q ss_pred CeEEEEECCCc--cEEEEEeCC------CCCeEEEEEe---cC---CCcEEEEEe-CCCcEEEEEcccceeeEEec----
Q 001159 862 GKVSLFNMMTF--KVMTMFMSP------PPAATFLAFH---PQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKLK---- 922 (1135)
Q Consensus 862 g~i~vwd~~~~--~~~~~~~~h------~~~v~~l~~s---p~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~---- 922 (1135)
-+|.+||+.+. ++++++.-. ......+++. |. ++.++..+. ..+-|.++|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 35778899888 888776532 3357888887 21 134444444 36789999999887554431
Q ss_pred ----------Cc----CCCeEEEEEcCC----CCeEEEEcCCCcEEEEeCCCCceece---eeeecCCCCCCCCCCceEE
Q 001159 923 ----------GH----QNRITGLAFSPT----LNALVSSGADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKV 981 (1135)
Q Consensus 923 ----------~h----~~~i~~l~~s~d----~~~l~s~~~D~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~ 981 (1135)
|. ...|..|++||+ ++.|.-....+ -++|.+.+.-.... ..++. .|.......-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceE
Confidence 10 136888999998 67776665444 34555443111000 00000 0111000123356
Q ss_pred EEC-CCCcEEEE-EecCeEEEEecCC-c----eeeccCCCCCCCCCEEEEEEeeCCCEEEEE
Q 001159 982 QFH-NDQTHLLV-VHESQISVYDSKL-E----CSRSWSPKDALPAPISSAIYSCDGLLVYAG 1036 (1135)
Q Consensus 982 ~~s-~dg~~l~~-~~d~~v~vwd~~~-~----~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~ 1036 (1135)
++. .+|.++++ ...+.|..|+..+ . ....+.... .-.....+++.++|.+.+++
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence 675 56766666 4788999999854 1 122222111 23356677776666654444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1135 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1jofa_ | 365 | b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.9 bits (198), Expect = 7e-17
Identities = 44/339 (12%), Positives = 100/339 (29%), Gaps = 32/339 (9%)
Query: 302 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQT 360
+++ L +IR + T N+ + RTL + + +M + +
Sbjct: 10 EAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL 69
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
L+ + G + +W+ + ++ P + + + + + ++
Sbjct: 70 -LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI---------- 470
V S+ + Y +I G + Q
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 471 -----------VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519
V+ D K+WDV G + TF GHE+ + ++C + +
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG--NAFATGSD 246
Query: 520 DGKIKAWLYDYLGSRVDYDAPGNWC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
D + + + Y C T +++S G L + + + W+ +
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKA 302
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+G R + + +K W+
Sbjct: 303 DRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.9 bits (190), Expect = 8e-16
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 793 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852
+ V L T SG A+ +LW G E I N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMC----RQTFTGHESDINAICFFPN 237
Query: 853 DSYVMSASGG---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 909
+ + S ++ + + T ++F ++ G +D + +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 910 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
++ + L GH NR++ L + A+ + D+ L +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 7e-12
Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 15/184 (8%)
Query: 867 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 926
+ T + D + G D+S ++++VR + GH++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 927 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986
I + F P NA + DA ++ + ++L + G T V F
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC------GITSVSFSKS 281
Query: 987 QTHLLVVHE-SQISVYDSKLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1042
LL ++ +V+D + L +S + DG+ V G D +
Sbjct: 282 GRLLLAGYDDFNCNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 1043 GVFD 1046
+++
Sbjct: 337 KIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 43/283 (15%)
Query: 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489
I + ++R + H+ + + + + +L +V+ D + +WD K
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRL-LVSASQDGKLIIWDSYTTNK 89
Query: 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549
+ + V + + I RV + G+ +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 550 SADGTRLFSCGT---------------------------------------SKEGESHLV 570
+ S ++
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ EG ++T++G + + + F N F D+ + +D+ L T D
Sbjct: 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + F+K G LL D + +L G
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 949
D + I V +R + L+GH +I + + LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 950 CMWSIDKWEKLKS 962
+W K+ +
Sbjct: 80 IIWDSYTTNKVHA 92
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.6 bits (192), Expect = 3e-16
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 8/192 (4%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISA 394
T V+T + M Q T++ +N + +W V ++E A + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
+ P + A G G L + ++ + TG L H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV--GHDN 248
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
V + F K I++C DDK ++VWD R T HE V S+ H ++
Sbjct: 249 WVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYV 304
Query: 515 FSTAIDGKIKAW 526
+ ++D +K W
Sbjct: 305 VTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%)
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
+ P + L H V + F HP + +V+ +D IKVWD G + T +G
Sbjct: 2 EWIPRPPEKYALS--GHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKG 57
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555
H V + H + S D IK W + + + ++ +G
Sbjct: 58 HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
+ S K + V+ +T++G R+ +V+ + + ++ ++ W
Sbjct: 116 IVSASRDKTIKMWEVQTGY----CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVW 170
Query: 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664
+ + + + + E S +++ + + G
Sbjct: 171 VVATKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 7e-15
Identities = 55/328 (16%), Positives = 104/328 (31%), Gaps = 46/328 (14%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S V + FHP +++ + I +W+ + + L
Sbjct: 18 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKG 57
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
SV + G + + + + + + PN
Sbjct: 58 HTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
IV+ DK IK+W+V G TF GH V V P+ I S + D ++ W
Sbjct: 114 D-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVW 170
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT----------------SKEGESHLV 570
+ + + + ++++ + + S + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G T G GV F + L+ D+ ++ WD N + T++A
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKI 658
S L F+K + + D +K+
Sbjct: 290 HFVTS--LDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 846 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 904
K +++S S + ++++ T + + + FH I +D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADD 268
Query: 905 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
++++++ + L H++ +T L F T +V+ D + +W
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 24/178 (13%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 846 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----------- 893
+ +++ + + S S V ++ + T + +++ P+
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207
Query: 894 --------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 945
+ G D ++++++V L GH N + G+ F ++S
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 946 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1002
D L +W +K+ + A T + FH +++ + + V++
Sbjct: 268 DKTLRVWDYKNKRCMKT--LNAHEHFV------TSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW 374
D A ++ V TK L + +V+ + + + G +
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 375 EVGSRERL----AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430
L K K+WD+S M L L V ++ G +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVST-GMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ ++ Y + ++AH V + F H +VT D+ +KVW+
Sbjct: 270 TLRVWDY-KNKRCMK--TLNAHEHFVTSLDF-HKTAPY-VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 6e-06
Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 28/290 (9%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 879
++W +G K +S I+ + + S S M
Sbjct: 42 KVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97
Query: 880 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 939
+ + I D +++++ V+ GH+ + + +
Sbjct: 98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 157
Query: 940 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 999
+ S D + +W + E E+ ++ T +
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217
Query: 1000 VYDS--------KLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048
+ K+ + L + ++ G + + D + V+D +
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 1049 TLRFRCRI-GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097
R + ++ + TA + G D V V
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFHKTA------------PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 7e-06
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 962
K L GH++ +T + F P + +VS+ DA + +W + + ++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 886 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 945
T + FHP +++ ED+++++++ + + LKGH + + ++F +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK------- 72
Query: 946 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1005
L S D KL +V ++ ++
Sbjct: 73 --LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 1006 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1056
+ + + DG L+ + D + V+ T + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.8 bits (169), Expect = 6e-13
Identities = 41/349 (11%), Positives = 106/349 (30%), Gaps = 28/349 (8%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
N ++ + ++L+ S V + F + L G N ++ V S L +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRV-SDGSLVARLS 100
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
+ L + + + + + PDG L ++ ++ +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL- 159
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
+ + + +V+ D+ +++WD+ G+ T +
Sbjct: 160 ----QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-------NWCTMMAYSADGTRLFSCG 560
++I + ++D ++ W + D+ + + ++ DG + S
Sbjct: 216 DG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 561 TSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613
+ + ++ + K + V L+ + +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 614 FWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTSDNGIKI 658
FWD + N L + + + E ++ A + D +I
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 27/215 (12%)
Query: 325 HTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384
V D T TL+ V ++ P + G+ + +W+ + +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ + V V+ DG + V L+
Sbjct: 243 LDSENESGTGHKDS------------VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 445 QHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
++ V +A ++ I++ D+ + WD +G +G
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 496 HEAPVYSVCPHHKESI----QFIFSTAIDGKIKAW 526
H V SV + S+ + + D K + W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 8e-11
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 846 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAA------------TFLAFHP 892
+ +++ V+S S V L+N+ + +P +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 893 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA------FSPTLNALVSSGAD 946
++ I G +D V ++ + L+GH+N + +A P N + D
Sbjct: 319 -NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 947 AQLCMWSIDK 956
+ +W K
Sbjct: 378 CKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 26/264 (9%)
Query: 808 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLF 867
+P GK A A + + E+ + + ++S SG +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 868 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTK 920
+ ++ +S T +A P D IA G D +V++++ R+D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE-- 978
GH++ + + F+ ++VS D + +W++ + +G
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 979 --TKVQFHNDQTHLLVVHE-SQISVYDSKLECSRSWSPKDALP---------APISSAIY 1026
V + ++L + + +D +S +P L A + +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWD-----KKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 1027 SCDGLLVYAGFCDGAIGVFDAETL 1050
+ + G D ++ + +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 17/143 (11%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
+V S+ F Q+ ++ G+ + LW + + + +
Sbjct: 255 DSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD---- 309
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---- 462
V + + V + +G L+ H V +A A
Sbjct: 310 ---FVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ--GHRNSVISVAVANGSS 363
Query: 463 -HPNKQLCIVTCGDDKMIKVWDV 484
P + T D ++W
Sbjct: 364 LGPEYNV-FATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 38/356 (10%), Positives = 83/356 (23%), Gaps = 46/356 (12%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
++ +D Q L L+ + D+ L +L
Sbjct: 13 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVE-----LHKSL 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIV--HLYTYNPTGELRQH------------LEI 449
+ + V + DG L +K + + L
Sbjct: 60 DHTSV--VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
+ + + F P+ + D + ++ +
Sbjct: 118 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFP 173
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569
S + S + D ++ W + T+ DG + + +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 570 VEWNESEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
E + V V F ++ + +K W++ N N +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 628 ADGGLPASP----------RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + + + D G+ G L ML+G
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 348
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 7e-04
Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 30/325 (9%)
Query: 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 862
Q + L+ P + ++++S C+ S + Y+ +
Sbjct: 26 QSVPDALKKQTNDYYI--LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83
Query: 863 KVSLFNMMTFKVMTMFMSPPPAA------------------TFLAFHPQDNNIIAIGMED 904
++ + ++ A + F P D +A G ED
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAED 142
Query: 905 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 964
++I+++ ++ L+GH+ I L + P+ + LVS D + +W + + +
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202
Query: 965 IQAPAGRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPIS 1022
I+ SP G+ D+ + E+ V E KD +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD----SVY 258
Query: 1023 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFR--CRIGPSAYIPTYAVSNTAHPLVIAPHP 1080
S +++ DG V +G D ++ +++ + + + S + + L +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1081 SEPNQIALGMSDGAVHVVEPSDAEL 1105
++ I G D V +
Sbjct: 319 ND-EYILSGSKDRGVLFWDKKSGNP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 4e-12
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 886 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSS 943
+ A++ D IAI + V IY ++ +LK H ++TG+ ++P N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003
G D +W++ + I + + + I ++
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQ 126
Query: 1004 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1061
+ + K + + + S + + +L+ AG CD +F A R P+ +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.7 bits (153), Expect = 4e-11
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 23/278 (8%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ W D + + + H VH+Y + + Q E+ H G V + +A + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
VTCG D+ VW + + T + C + + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 530 YLGSRV--------------DYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNE 574
D N + A S D R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 575 SEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632
S+ V V F +R + + D D + T+ ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670
+ F E SL+A D + L
Sbjct: 245 -PLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSF 280
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (91), Expect = 0.001
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905
+ S V + LF + F + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDK 306
Query: 906 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP----TLNALVSSGADAQLCMWSIDKWEKL 960
H+N ++ ++ + ++G D + +W + E
Sbjct: 307 KASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLC--IVTCGDDKMIKVWDV 484
H V+ I+ K C T G D + +WDV
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 20/219 (9%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
GEL+ + H V I IV+ DD +KVW V G+ T GH
Sbjct: 3 RGELKSPKVLKGHDDHV--ITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559
V+S D I + D + + T+ +++ +
Sbjct: 60 VWSSQMR-------------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106
Query: 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
S + + V R ++ +F +K WD +
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166
Query: 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
L T+ + +G + + D I++
Sbjct: 167 ETCLHTLQGH----TNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 15/157 (9%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D I+VWDV G +T GH++ + + S D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIK 245
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
P + + S +G L W+ G R
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 590 SLGV----VQFDTTRNRFLAAGD----EFQIKFWDMD 618
G ++ T+ E ++ D D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 48/394 (12%), Positives = 112/394 (28%), Gaps = 63/394 (15%)
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631
W E + G + +QF NR ++ D+ +K W L T+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVG--- 55
Query: 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691
G + + DN I + +++ G + + + L
Sbjct: 56 ----------HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105
Query: 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751
VS + TL D +G + R V R +
Sbjct: 106 H-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160
Query: 752 IPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 811
+ D + + L+ G+ +++ + + ++W +
Sbjct: 161 VWDPETETCLHTLQ-------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE-------- 205
Query: 812 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMT 871
N I+ + + + L ++ V + V ++++ T
Sbjct: 206 ------------------TGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKT 246
Query: 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GHQN 926
+ + P + + + N + +D +V++++++ E L G
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306
Query: 927 RITGLAFSPTLNALVSSGAD----AQLCMWSIDK 956
+ + S T + +L + D
Sbjct: 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 14/188 (7%)
Query: 856 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 915
V A V +++ T + L F D + G D+S+++++V
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG 207
Query: 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 975
L GHQ+ +G+ + LVS AD+ + +W I + L++
Sbjct: 208 NCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKH------ 259
Query: 976 VGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKDALP--APISSAIYSCDGLL 1032
N + + + ++D E R+ ++ + S L+
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319
Query: 1033 VYAGFCDG 1040
G +G
Sbjct: 320 CAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 7e-05
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ DG+ + + ++ + H + + N
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMEL-KDN---I 229
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--- 526
+V+ D +K+WD+ G+ T +G +V F+ +++ DG +K W
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLK 288
Query: 527 ----LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573
+ + + ++ G + S + E+ L+ +
Sbjct: 289 TGEFIRNLV--TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 25/209 (11%), Positives = 60/209 (28%), Gaps = 29/209 (13%)
Query: 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 948
N I G +D+++++++ + L GH + +
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII---------- 70
Query: 949 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS 1008
S D+ K+ + + +++ + ++ + V+D E
Sbjct: 71 -ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI--ETG 127
Query: 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1068
+ A + Y ++ A D + V+D ET +
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGA--YDFMVKVWDPETETCLHTL------------ 173
Query: 1069 NTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097
H + + + G D ++ V
Sbjct: 174 -QGHTNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 8e-10
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKES 510
H ++ I + + I+ G + ++++ +G+ ++SV K
Sbjct: 280 HHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 511 IQFIFSTAIDGKIKAWLYDY 530
+ + DG+ + D+
Sbjct: 336 -TLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 7e-08
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 867 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQ 925
F + + +NI+ G ++ IYN+R + V +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 926 NRITGLAFSPTLNALVSSGADAQLCMWSID 955
++I + F + + D Q + +D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 1e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
Q + H+ V N ++T DDKMI+V+D + + GH+ V+++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
H + S + D ++ W ++ + + + S++
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 565 GESHLVEWNESEGAIKRTYSGFRKRSL 591
H+ W + + + L
Sbjct: 118 NTLHV--WKLPKESSVPDHGEEHDYPL 142
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
++N + G +D +++Y+ + +L GH + L ++ LVS D + +W
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 954 IDKW 957
I K
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 2e-04
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 9/190 (4%)
Query: 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 977
+T L+GH + N +++ D + ++ + L + G G
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDG------G 55
Query: 978 ETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1037
+++ + + + + V+D K C + + + G
Sbjct: 56 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115
Query: 1038 CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097
D + V+ G P + +P + + G + V
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175
Query: 1098 VEPSDAELKW 1107
D L
Sbjct: 176 SGSYDNTLIV 185
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV C+ + + ++ +Y + L H GGV + +AH
Sbjct: 14 SVITCLQ-FEDNYVITGADDKMIRVYDSI-NKKFLLQLS--GHDGGVWALKYAHGG---I 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D+ ++VWD+ G + FEGH + V + ++I++I + + D + W
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 530 YLGSRVDYDAPGNWCTMM 547
S D+ ++ +
Sbjct: 127 KESSVPDHGEEHDYPLVF 144
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 16/216 (7%)
Query: 444 RQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
R L+ I + + Q IV+ D IK+WD + GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562
+ + I + + +A + ++ S
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV- 119
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ + V D ++A + IK W+
Sbjct: 120 ---------WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
+ T++ L+ +SDN I++
Sbjct: 171 VRTLNGHK----RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ KVW+ S + ++ S + + L+ LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---------TFEG 495
G ++ IV+ D IKVWD+VA T
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
H V+ + I S++ D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK- 920
+ L+++ + + + DN I G D ++++++
Sbjct: 198 NTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 921 --------LKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
L H R+ L F +VSS D + +W
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 25/204 (12%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+ I G+ D++++I++ E K L GH + L + + SS + ++ +
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1013
+ + N+ + + I+V+D +
Sbjct: 84 TGEMLNTLIHHCE-----------AVLHLRFNNGMMVTCSKDRSIAVWDMA-SPTDITLR 131
Query: 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1073
+ + + + D + + D I V++ T F + H
Sbjct: 132 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-------------NGHK 178
Query: 1074 LVIAPHPSEPNQIALGMSDGAVHV 1097
IA + G SD + +
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
++WDI + L D + + ++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 448 E------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V + F + IV+ D I +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 7e-09
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAP 499
G + Q H + ++ + + + + + I WD+ G F + H
Sbjct: 2 GSIDQVRY--GHNKAITALSS-SADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATM 57
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 551
+ + +F+ + D +K G + A
Sbjct: 58 ITGIKTTS---KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 962
+ GH IT L+ S L S+ A+ + W I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 26/323 (8%), Positives = 73/323 (22%), Gaps = 33/323 (10%)
Query: 338 TVVRTLNQG--SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
++ + G + ++ +T L G I+ W++ +
Sbjct: 3 SIDQVR-YGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNR------------ 48
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
+ A + G + V++ H+ G + A+
Sbjct: 49 ------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKV---VPAGGSGVDSSKAVANKLS 99
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
+ A V + + + + ++ +
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQ 156
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
+ + + + + A F T + + +
Sbjct: 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-----GAFLVATDQSRKVIPYSVANN 211
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
F + V + R + + W+M+ + + +S
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271
Query: 636 PRLRFNKEGSLLAVTTSDNGIKI 658
+ + D+ IK
Sbjct: 272 VNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
W PD + L + V ++ N + AH + + V
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLNETTI--V 284
Query: 472 TCGDDKMIKVWDV 484
+ G D IK W+V
Sbjct: 285 SAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 463 HPNKQLCIVTCGDDKMIKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520
+ + T D + VW++ H + E I S D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQD 289
Query: 521 GKIKAW 526
IK W
Sbjct: 290 SNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 8e-04
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKL 921
T + A DN +A G D+SV ++N+ D
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 922 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
H +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 6/109 (5%), Positives = 23/109 (21%), Gaps = 2/109 (1%)
Query: 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905
+ ++ + L F +D+
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDN 287
Query: 906 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
+ + + + + S +V+ D + ++ +
Sbjct: 288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 35/321 (10%), Positives = 81/321 (25%), Gaps = 35/321 (10%)
Query: 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-- 397
+ TLN G V ++ + + G + + KVWDIS
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVY-------------TGGKGCV-----KVWDISHPGNKS 86
Query: 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457
P+ + + C PDG L V + ++ + +
Sbjct: 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
+ G+ + + + + + C +++
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLH-----NQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
+D +++W +D + Y G L S E V +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
++F F++ G + + W + + +
Sbjct: 261 LHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS--- 311
Query: 638 LRFNKEGSLLAVTTSDNGIKI 658
+ + + + D +
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ + P G L V V + N ++ H V + FA+ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
V+ G D ++ W G + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 8e-06
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ G ++++ + P G + V + + IVT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT-PYGASIFQSK---ESSSVLSCDI-SVDDKY-IVTG 324
Query: 474 GDDKMIKVWDVV 485
DK V++V+
Sbjct: 325 SGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 11/137 (8%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477
DG M V F + L H V + ++P + + T G
Sbjct: 19 ADGQMQPVPFPPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHV--YTGGKGC 73
Query: 478 MIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532
+KVWD+ Q + + S + A I
Sbjct: 74 -VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 533 SRVDYDAPGNWCTMMAY 549
+ + + C +A
Sbjct: 133 IKAELTSSAPACYALAI 149
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905
CI +S + + + + + L + P + +S
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMES 245
Query: 906 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 965
S K +L H++ + L F+ VS+G D L W +
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--- 302
Query: 966 QAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1002
+ S + D +++ + + +VY+
Sbjct: 303 ---SKESSSV---LSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 9/244 (3%)
Query: 445 QHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPV 500
Q ++I A ++DI P+K L ++ D + V+ K ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKI-IPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+Q T +K L + + N +L +
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 561 TSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
E + + K + DT +R + + Q++++ +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 620 MNMLTTVDADGGLPASPRLR--FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677
+ GL R KE A ++ D + + D + A
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 678 KNRC 681
+R
Sbjct: 240 CHRL 243
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 26/325 (8%), Positives = 75/325 (23%), Gaps = 35/325 (10%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ + P + +L + S + V+ + +
Sbjct: 14 ISDIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYK 56
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+ C + + + + L Q L + G+ I +K +
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
G ++I + G + V + + + + +++ +
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 528 YDYLGSRVDYDAPGNWCTMM----AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
+ + + + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 584 SGFRKRSLGV----------VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
+ R ++F AG + I W++ +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFN 293
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKI 658
++ ++L + TSD+ K
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 9e-06
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL------------RQHLEIDAHVGGVND 458
+ + + + V + ++ G+ R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFST 517
I F+ +K L G D +I W++ +K F +E V + +
Sbjct: 257 IEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 518 AIDGKIKAW 526
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG 944
+ P +++ I D S+ +Y + L +++ + F + + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 945 ADAQLCMWSIDKW 957
+
Sbjct: 76 TVQGEILKVDLIG 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 23/265 (8%), Positives = 59/265 (22%), Gaps = 16/265 (6%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ P +L + + +Y ++ + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
V +++KV + + Q + + S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT---YSGF 586
G + N + S S + + SG
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR--------- 637
+ + V + + + + ++ D+
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 638 ----LRFNKEGSLLAVTTSDNGIKI 658
+ F+ L SD I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 980
+ ++ I+ + P+ + L+ + D L ++ D K + + PL
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--LLQSLRYKHPL---LC 61
Query: 981 VQFHNDQTHLLV 992
F ++ +
Sbjct: 62 CNFIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.002
Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 33/179 (18%)
Query: 866 LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------------- 912
L +A P++ A D V +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 913 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 970
R + K + + FSP L ++G+D + W++ +K+K+ F +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN-FAKFNED 295
Query: 971 RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD 1029
+ V+ L + + D+ ++ + D +S+IY
Sbjct: 296 --------SVVKIACSDNILCLA-----TSDDT----FKTNAAIDQTIELNASSIYIIF 337
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 867 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQ 925
+S PA + +++A G D+++ IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 926 NRITGLAFSPTLNALVSSGADAQLCMWSI 954
+ + L + + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ ++ + +Y+ ++ + L AH GVN++ + P+ +V+
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 474 GDDKMIKVWDVV 485
G D IK W+VV
Sbjct: 276 GADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 469 CIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ T D I ++ V K H+ V ++ + + S+ D IK W
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST---LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G+ + +P +++ D I W + + H + S+
Sbjct: 9 ISGHNKGITALTV-NP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 509 ESIQFIFSTAIDGKIKAWLYDY 530
+ I +++
Sbjct: 58 QEYSSISWDDTLKVNGITKHEF 79
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 967
DEV + GH IT L +P L+S D ++ WS + S I +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS 51
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 43/331 (12%), Positives = 84/331 (25%), Gaps = 44/331 (13%)
Query: 281 VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVV 340
V +K + ++ + + AG P D T
Sbjct: 98 VAEIKIGIEARSVESSKFKGYEDRYT-------------IAGAYWPPQFAIMDGETLEPK 144
Query: 341 RTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
+ ++ G V + +HP+ + ++ ++ + V KV ++ +
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG-------KVLLVNYKDIDN 197
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459
AA + W A + + L +++
Sbjct: 198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 460 AFAHPNKQLCIVTCGDDK--------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES- 510
F HP T K A +K +G + H K S
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 511 IQFIFSTAIDGKIKAWLYDY-------------LGSRVDYDAPGNWCTMMAYSADGTRL- 556
+ + D +I + + + D Y+ G +
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377
Query: 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
FS K S LV ++ +K R
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 64/519 (12%), Positives = 127/519 (24%), Gaps = 113/519 (21%)
Query: 571 EWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDA 628
EW E + R + N F D QI D D+ ++ +D
Sbjct: 1 EWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT 60
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688
G R + G L V D I ++
Sbjct: 61 -GYAVHI--SRMSASGRYLLVIGRDARIDMIDLWAK------------------------ 93
Query: 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748
+P + + + + + + D + ++
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF-----------AIMDGETLE 142
Query: 749 SWRIPDIS----DPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQR 804
+I D +I AS I K+
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----------TGKVLLVNY 192
Query: 805 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKV 864
+ + + AP L + ++ +A+ + +SA V
Sbjct: 193 KDIDNLTVTSIGAAPFLA----DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL---V 245
Query: 865 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924
+ F+ P + H D +I IG + + Y + +L+G
Sbjct: 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW---KKVAELQGQ 302
Query: 925 QNRITGLAFSPTLNALV-------SSGADAQLCMWSIDKWEKLKSRF-IQAPAGRQSPLV 976
+ P + L + + ++ + + I A
Sbjct: 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 362
Query: 977 GETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1036
+ +++ + SV++ K +
Sbjct: 363 RVVQPEYNKRGDEVWF------SVWNGKND------------------------------ 386
Query: 1037 FCDGAIGVFDAETLRFRCRI-GPSAYIPT--YAVSNTAH 1072
A+ V D +TL+ + + P PT + V NT H
Sbjct: 387 --SSALVVVDDKTLKLKAVVKDPRLITPTGKFNVYNTQH 423
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
L VT D I + D + + + A + +++
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASG--RYLLVI 79
Query: 518 AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYSADGTRLFSCG 560
D +I + + + + +
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 4/171 (2%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS 393
+L TV + S+D + ++ G N G + + E+ + L + + I+
Sbjct: 172 ELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV 453
++ ++ G + PT + L AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
V ++F + + + G D ++ WDV + T H +
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 22/302 (7%), Positives = 71/302 (23%), Gaps = 43/302 (14%)
Query: 434 LYTYNPTGELRQHLEIDAHVGGVNDIAF-----AHPNKQLCIVTCGDDKMIKVWDVVAGR 488
+ + H G++ + + + T + + +
Sbjct: 41 NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100
Query: 489 KQYTFEGHEAPVYSVCPHHKE-------------SIQFIFSTAIDGKIKAW--------- 526
+ + + + +T + G W
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160
Query: 527 ---------LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK----EGESHLVEWN 573
+ G+ P + T + S G + + + S L
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219
Query: 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
E + RS+ + + I ++ + + ++
Sbjct: 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG--VRLLRMLEGRAMDKNRCPSEPISSKPL 691
+ F +++++ +D+G + + +R + + + I +
Sbjct: 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339
Query: 692 TI 693
+
Sbjct: 340 IL 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 1e-04
Identities = 37/375 (9%), Positives = 99/375 (26%), Gaps = 34/375 (9%)
Query: 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651
+ + ++ + +K WD ++ D + + L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74
Query: 652 SDNGIKILA--NSDG-VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
+ ++A + G + R+ K + + + S +
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGA 129
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768
+ +R + G+ + A++ + + P + +++ P
Sbjct: 130 SNDRLLSHRLVA-----TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 769 SIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 828
A S + + GL +A+ + + + + S
Sbjct: 185 QFATS-----VDISERGL----IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235
Query: 829 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 888
+ S + + + + L
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295
Query: 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI----TGLAFSPTLNALVSSG 944
+F+ + D ++ ++V+ E T L H + I LA ++L G
Sbjct: 296 SFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Query: 945 ADAQLCMWSIDKWEK 959
++ + +K
Sbjct: 355 ------VFDVKFLKK 363
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 8e-07
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 944
A L P + I +SV V H ++ T SP+ S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 945 ADAQLCMWSIDKWEKLKSRFIQAPAGRQS 973
+ +W + + I +G
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
G G + + + TG + G P+ I
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IA 254
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ DK IK+W+V + + T E + Q + S + +G I
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 868 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN- 926
F+ ++ + F D IA D +++I+NV +V+ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 927 RITGLAFSPTLNALVSSGADAQLCMWSID 955
L T ALVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 31/297 (10%), Positives = 74/297 (24%), Gaps = 20/297 (6%)
Query: 323 VAHTPNVYSQDDLTKTVVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381
+ +VY+ + T + S+ P G G++ +W+
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTH 92
Query: 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ V+ + + F + +
Sbjct: 93 ILKTTIPVFSGPVKDISWDS-----------ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
Q +++ + V + K ++ P
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ + +DG D + A + +S DGT++ S
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDD---SLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618
K + WN + +++T + + T+ ++ I F + +
Sbjct: 259 DK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 31/333 (9%), Positives = 77/333 (23%), Gaps = 27/333 (8%)
Query: 320 FAGVAHTPNVYSQDDLTKTVVRTL---NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
A + D V + + + G M P + + ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 377 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLGVAFSKHIVHLY 435
+ E L + S+ AA+S + + + + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSL-------FGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-------CIVTCGDDKMIKVWDVVAGR 488
E + + +A+A +L ++ +++ + +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548
+ + V++ ++ D G D M
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMRE 235
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------VQFDTTRNR 602
FS + + + + + V T +
Sbjct: 236 VRIMDVFYFSTAVNPAK--TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
G + +D + + VD G S
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 23/331 (6%), Positives = 78/331 (23%), Gaps = 40/331 (12%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDI 392
D++ T V + + + + + + GT GD + +++ + + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 393 SAAS-----------MPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ + ++ + ++ S + + P
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 442 ELRQHLEIDAHVGGVN---------------DIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ + + D A A + + D V
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 487 GR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYD 538
K + + ++ ++ +
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
P ++ + + L++++ + + ++
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-----LRLSA 324
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
R + D+ +I + ++ TV+ D
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ + S + P + V E G +
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
L + + + V G A K ++ Y T ++ +
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEV------KNN 316
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+ D+ + K + + DD I + + + T E + P+
Sbjct: 317 LTDLRLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 7e-05
Identities = 36/364 (9%), Positives = 90/364 (24%), Gaps = 31/364 (8%)
Query: 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI-LA 660
+A Q D+ +L + R + + + + G + +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
+ + + E + + + PT+ R
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVV--R 778
+ D +++ + D+ A A +
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 779 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 838
+Y S SL V ++ + P P S T + + +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 839 PTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 898
+ S+ + ++++ S +
Sbjct: 252 MYKRSSPIN-------------------VDPGDYRMIIPLESSILIYSVPVHGE-FAAYY 291
Query: 899 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 958
E + Y+V+ K+ +N +T L S ++ D ++ + ++K E
Sbjct: 292 QGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Query: 959 KLKS 962
++
Sbjct: 348 DERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 0.001
Identities = 28/245 (11%), Positives = 52/245 (21%), Gaps = 17/245 (6%)
Query: 883 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 942
P+ F P D ++IA Q + V RI +
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 943 SGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 1000
G L ++ + K ND+ ++ V
Sbjct: 60 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 1001 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1060
+ + A G+ AI V+D E + ++
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179
Query: 1061 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPS 1120
+ ++ + + + PL
Sbjct: 180 HDYAP------------AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP 227
Query: 1121 NSSNP 1125
S NP
Sbjct: 228 GSPNP 232
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.002
Identities = 33/349 (9%), Positives = 78/349 (22%), Gaps = 34/349 (9%)
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492
+ + +G + + + K I + + ++D K
Sbjct: 25 QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-YRTGKAEK 80
Query: 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMA 548
FE + V+++ + + +
Sbjct: 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 140
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
+ A G L T + ++ I + FD
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSY 198
Query: 609 EFQIKFWDMDNMNMLTTV-----------DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657
D +N V + PR ++ G
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
Query: 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 717
I + R++ LE + + ++ G +
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEVKNNL 317
Query: 718 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+ +S+ D ++ V +D KI ++ + P + +
Sbjct: 318 TDLRLSA----DRKTVM-----VRKDDGKIYTF---PLEKPEDERTVET 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
S R V V + ++ D I
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 470 IVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T G D I+VWDV + +++T + + V + I S ++DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 23/253 (9%), Positives = 59/253 (23%), Gaps = 10/253 (3%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG 474
+ P + K + ++ ++ H V + F+ + +
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 84
Query: 475 DDKMIKVWDVVAGRKQYTF--------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ + VW ++ + + P+ + + + D
Sbjct: 85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 144
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+D S + A RT+
Sbjct: 145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGS 645
V + + G + +I +D + L ++ D +
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 646 LLAVTTSDNGIKI 658
A +D I++
Sbjct: 265 KFATVGADATIRV 277
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 8/101 (7%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443
+ +D + + + D + + ++ T +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKC 285
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484
Q +D G + I++ D + +++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQ-NRITGLAFSPTLNA-- 939
T L++ P N I + + V+ + +V + GH + +T + FSP +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 940 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989
L S ++ +W ++ S + + Q + + + +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 36/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 319 SFAGVAHTPN--VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
+FA +A++ + + D + V T+ GSN M P + + + D+S+ +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 377 GSRERLAHKPF----------------------KVWDISAASMPLQNALLNDAAISVNRC 414
+ +A P + A S
Sbjct: 62 ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL 121
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
PDG L V + T + + + G+ +
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
+ V + V EA + + + + ++ + + +
Sbjct: 182 ISVIDTVTNSV-----IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGV 593
G +A + DG +++ + + + + + I T + G + G
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVY---VALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
+H++ N G L ++ G V + P+K+ V + + + +
Sbjct: 16 IHVWNLNHEGALTL-TQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547
TF A S+ ST G+ G+ +
Sbjct: 74 TFAAESALPGSLTH---------ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.001
Identities = 23/299 (7%), Positives = 66/299 (22%), Gaps = 46/299 (15%)
Query: 329 VYSQDDLTK-TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
V++ + T+ + ++ V M P ++ + + + + + +
Sbjct: 18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 388 KVWDISAAS--------------------------------MPLQNALLNDAAISVNRCV 415
+ + + + D S N
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
+ + + + + + + E+ G HPN+Q
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----- 530
+ + VW++ + + + +
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 257
Query: 531 -------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582
+ S+ + G L + G K + E +G +
Sbjct: 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEK 315
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 25/281 (8%), Positives = 60/281 (21%), Gaps = 23/281 (8%)
Query: 216 PTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFV 275
P I + P+ ++P + + S +P++ + +
Sbjct: 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144
Query: 276 QPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDL 335
+ T D G +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMH----CRDGSLAKVAF--------GTEGTPEITHTEVFHPE 192
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ ++ + + I + + GD + + +
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-------VEALTEAERADG 245
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
P + + + V + TGE E
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAKFE---MGHE 301
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496
++ I + K L DK + + D +G + +
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 44/318 (13%)
Query: 301 ADSDHLMKRIRTGQSDEVSFA------GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
++ ++ I G A A T V + + + + D
Sbjct: 35 GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALLNDAAI- 409
LVGT SL G V D+ + + + I
Sbjct: 95 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154
Query: 410 ---SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+ DG + VAF T+ +N A++
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------INHPAYSQKAG 207
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFS-------- 516
+L T I D+ +G ++ E + Q +
Sbjct: 208 RLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 517 --------TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ D G R+ G+ + S D L ++ +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 568 HLVEWNESEGAIKRTYSG 585
++ + G R+ +
Sbjct: 326 YI--HDAESGEELRSVNQ 341
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 43.0 bits (101), Expect = 2e-04
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 20/176 (11%)
Query: 830 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 889
+ + A K ++ + + T ++ P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF-TRYIPVPKNPHGLN 264
Query: 890 FHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITG----------LAFSPTLN 938
P IA G +V + + ++D++ ++ I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 939 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 994
A + D+Q+C W+I I+ G + + + K+ H
Sbjct: 325 AYTTLFIDSQVCKWNIADA-------IKHYNGDRVNYIRQ-KLDVQYQPGHNHASL 372
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 2e-04
Identities = 23/237 (9%), Positives = 52/237 (21%), Gaps = 28/237 (11%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G ++ S P + + N +V+ +
Sbjct: 88 GRSMYSFAISPDGKE-VYATVNPTQRLNDHYVV----KPPRLEVFSTADGLEAKPVRTFP 142
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---------------- 449
V DG + + + + T T L
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 450 -DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHH 507
H + + + T D+ G+ F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
K+ Q ++ + + + +A+ G +L+ GT +
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.4 bits (98), Expect = 2e-04
Identities = 17/179 (9%), Positives = 43/179 (24%), Gaps = 18/179 (10%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFSPTLN-ALVSSGA 945
A + + + +++ + +V D V + +P A V +
Sbjct: 2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 946 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES--------- 996
+ +D + + + D +
Sbjct: 61 YGDIYGIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 997 ----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051
++ V+ + +P + + DG L AG + V +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 7e-04
Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 2/217 (0%)
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
+ +P ++ + + +
Sbjct: 127 FSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
+ S S A Q + L + TG +
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
+D +S + + D + +++ N + F +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 305
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397
L +G D++++ + E++ + D+S +
Sbjct: 306 -LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.7 bits (91), Expect = 0.001
Identities = 17/172 (9%), Positives = 40/172 (23%), Gaps = 14/172 (8%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER-------LAHKPFK 388
T L + P + + S+ +R + A +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 389 VWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 448
+ + D + P + + + Y +L +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLK-QRKLIKAAN 289
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+D +AF +L G + V++ K + +
Sbjct: 290 LD---HTYYCVAFDKKGDKL--YLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (98), Expect = 3e-04
Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 31/203 (15%)
Query: 812 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMT 871
+ + V P+ + D+ +N V G+++L + T
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDL----------------ENLFSVTLRDAGQIALIDGST 51
Query: 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------RVDEVKTKLKGHQ 925
+++ T+ + A + + D V + ++ V E+K +
Sbjct: 52 YEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 108
Query: 926 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF- 983
+ T A+ + Q + + E K + + + E +V
Sbjct: 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168
Query: 984 ---HNDQTHLLVVHES-QISVYD 1002
H ++ V E+ +I + D
Sbjct: 169 LASHYRPEFIVNVKETGKILLVD 191
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (94), Expect = 9e-04
Identities = 22/195 (11%), Positives = 46/195 (23%), Gaps = 15/195 (7%)
Query: 442 ELRQHLEIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
E+R+ ++ + L VT D I + D + + A
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSADGTR 555
+ +++F DGK+ + T +
Sbjct: 65 HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA---GDEFQI 612
+ V + K+ S R + A EF +
Sbjct: 123 AIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 613 KFWDMDNMNMLTTVD 627
+ + ++ D
Sbjct: 180 NVKETGKILLVDYTD 194
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.6 bits (91), Expect = 0.002
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498
G+ + + + I A +++ ++D + + Q + E +
Sbjct: 302 SVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
Query: 499 P 499
P
Sbjct: 359 P 359
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Score = 39.4 bits (91), Expect = 0.002
Identities = 32/316 (10%), Positives = 79/316 (25%), Gaps = 38/316 (12%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWD 391
+ G + + D + I L+ +++ + + F V +
Sbjct: 69 SPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128
Query: 392 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEID 450
+QN + ++ V+ P L + + + + +GE+ +D
Sbjct: 129 TGKLEKNVQNYEYQENT-GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187
Query: 451 AHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
A G + A HP I + + + H P+
Sbjct: 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL--------- 238
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT---SKEGE 566
+ + A + G +F+ +
Sbjct: 239 ----------------IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG 282
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGV----VQFDTTRNRFLAAGDEF--QIKFWDMDNM 620
G+I++ + G V + ++A D+ ++ + +
Sbjct: 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342
Query: 621 NMLTTVDADGGLPASP 636
+ P
Sbjct: 343 FLHRVARVRIPEPGFG 358
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1135 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.57 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.53 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.52 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.45 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.2 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.14 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.13 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.1 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.03 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.95 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.9 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.39 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.36 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.23 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.0 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.86 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.76 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.65 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.65 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.62 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.62 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.59 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.59 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.57 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.54 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.5 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.48 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.47 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.45 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.45 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.38 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.37 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.29 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.22 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.21 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.98 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 96.89 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.52 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.21 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.24 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.18 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.79 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.46 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.39 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.79 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 92.42 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.18 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.87 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.27 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.66 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 84.41 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-36 Score=338.43 Aligned_cols=295 Identities=13% Similarity=0.198 Sum_probs=255.4
Q ss_pred ceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 336 ~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..+.+.++.|...|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~ 104 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEE
T ss_pred CceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEE
Confidence 456688889999999999999998 688887 89999999987654321 11112457999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
|+|||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++. ++++++.|+.|++||+.+++......+
T Consensus 105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~ 181 (337)
T d1gxra_ 105 LLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 9999999999999999999999865432 2346778999999999999999 899999999999999999999999999
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|...|.+++|++.+ ..+++++.|+.+++||+++.+....+. +...|.+++|+|+++++++++. ++.+++||++
T Consensus 182 ~~~~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cccccccccccccc--cccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccc
Confidence 99999999998765 899999999999999999877665554 6778999999999999999875 8889999999
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
++.... ...|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++|+.||+
T Consensus 255 ~~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 255 KPDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SSCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred cccccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCe
Confidence 888754 455555 8999999999999999999999999999999998887643 37999999999999999999999
Q ss_pred EEEEEc
Q 001159 656 IKILAN 661 (1135)
Q Consensus 656 i~iwd~ 661 (1135)
|+|||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-35 Score=323.19 Aligned_cols=287 Identities=14% Similarity=0.204 Sum_probs=246.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.+.+.+++++|+|+. +|.++ ++.|.+||+.++..... +.+|...|++++|+|+|++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeEe
Confidence 4456778999999995 55554 66899999998765542 678999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC--CCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
+|+.||+|+|||+.++..... ..+.+|..+|.+++|+|+++ +|++++. ++.+++|++.+++...++.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998765432 35788999999999999999 6777764 567999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|+|+++ ..+++|+.||.|++||+++.+....+..|...|.++.|+|+++++++++. ++.|++||..++..+..
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99998753 36889999999999999998888899999999999999999999999875 88999999999988877
Q ss_pred eec-------ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 583 YSG-------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 583 ~~~-------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
+.. |.. .|.+++|+|++++|++|+.||.|++||+++++++.++..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 653 444 7999999999999999999999999999999999999766432 2334455556778999999999
Q ss_pred EEEEEcC
Q 001159 656 IKILANS 662 (1135)
Q Consensus 656 i~iwd~~ 662 (1135)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-35 Score=326.41 Aligned_cols=310 Identities=17% Similarity=0.284 Sum_probs=266.6
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
....++|+||.++|++++|+|++ .+|+||+.||+|++||+.+++....+..|...|.+++|+|++.+++++.. +
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~----~ 80 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA----D 80 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSS--SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET----T
T ss_pred CCccEEEcCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc----c
Confidence 34457899999999999999865 89999999999999999999999999999999999999999999998875 7
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 646 (1135)
+.+..|+.........+.++.. .+.++.++++++.+++++.|+.+++||+.+++.+..+..+.. .+.+++|++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 157 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTL 157 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSE
T ss_pred cccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecccCCCE
Confidence 7889999999888888888877 889999999999999999999999999999999999987754 7899999999999
Q ss_pred EEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|++++.|+.|++|+..++ .....+.+
T Consensus 158 l~~~~~d~~v~~~~~~~~-~~~~~~~~----------------------------------------------------- 183 (317)
T d1vyhc1 158 IASCSNDQTVRVWVVATK-ECKAELRE----------------------------------------------------- 183 (317)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECC-----------------------------------------------------
T ss_pred EEEEeCCCeEEEEeeccc-eeeEEEec-----------------------------------------------------
Confidence 999999999999998776 22222211
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
+...+ ..+.++|++.........+
T Consensus 184 --------------------------------------------~~~~i-~~~~~~~~~~~~~~~~~~~----------- 207 (317)
T d1vyhc1 184 --------------------------------------------HRHVV-ECISWAPESSYSSISEATG----------- 207 (317)
T ss_dssp --------------------------------------------CSSCE-EEEEECCSCGGGGGGGCCS-----------
T ss_pred --------------------------------------------CCCCc-eEEEEeeccccceeecccc-----------
Confidence 23344 7888888776443322211
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCe
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA 885 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v 885 (1135)
........++.++++++ |+.|++||+.+++++.++.+|...|
T Consensus 208 -------------------------------------~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v 250 (317)
T d1vyhc1 208 -------------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250 (317)
T ss_dssp -------------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred -------------------------------------ceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCE
Confidence 11223345678888888 8999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001159 886 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 886 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd 953 (1135)
.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|+|++.||+|+|||
T Consensus 251 ~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-35 Score=324.68 Aligned_cols=286 Identities=20% Similarity=0.359 Sum_probs=262.0
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 341 ~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.+|. |.++|++++|+|+++ +||+|+.||+|+|||+.+++.+.+ +.+|...|.+++|+|+
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~ 70 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 70 (317)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeecc
Confidence 3455 999999999999998 789999999999999999887654 6789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
+.++++++.++.+.+|+........ .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 145 (317)
T d1vyhc1 71 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 145 (317)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCc
Confidence 9999999999999999998876544 5678999999999999999 8999999999999999999999999999999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCC--------------------CEEEEE
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--------------------TRLFSC 559 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--------------------~~l~~~ 559 (1135)
+.+++|++++ .+|++++.|+.|++|++.+......+..+...+.++.|+|++ ..++++
T Consensus 146 ~~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (317)
T d1vyhc1 146 VRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223 (317)
T ss_dssp EEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred ceeeecccCC--CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence 9999998855 899999999999999999999999999999999999998764 356676
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ++.|++||.++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++++.++..|.. .|++++
T Consensus 224 ~~----d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~ 296 (317)
T d1vyhc1 224 SR----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLD 296 (317)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEE
T ss_pred cC----CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 64 88999999999999999999887 899999999999999999999999999999999999987754 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEE
Q 001159 640 FNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd 660 (1135)
|+|++++|++|+.||+|+|||
T Consensus 297 ~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 297 FHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECSSSSCEEEEETTSEEEEEC
T ss_pred EcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-34 Score=319.67 Aligned_cols=281 Identities=14% Similarity=0.172 Sum_probs=237.4
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
|...| .+++|+|+|++|++++ ||.|+|||+...... ......... .| ...|.+++|+
T Consensus 50 H~~~V-~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~--~h-~~~I~~v~~s 106 (337)
T d1gxra_ 50 HGEVV-CAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCL--NR-DNYIRSCKLL 106 (337)
T ss_dssp CSSCC-CEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECS--CT-TSBEEEEEEC
T ss_pred CCCcE-EEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeec--CC-CCcEEEEEEc
Confidence 78888 9999999999999876 899999987643210 011111122 27 8899999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCC--ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 927 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 927 (1135)
|||++|++++ ||.|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|.+.
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 185 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 9999999998 89999999874 456677888999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CC
Q 001159 928 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL 1005 (1135)
Q Consensus 928 i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~ 1005 (1135)
|++++|++++..+++++.|+.|++||+.+++.+.... +. ..|.+++|+|++++|++ +.|+.+++||+ ..
T Consensus 186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~------~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred cccccccccccccccccccccccccccccceeecccc------cc---cceEEEEEcccccccceecccccccccccccc
Confidence 9999999999999999999999999999887543221 22 57899999999999998 57899999999 44
Q ss_pred ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCE
Q 001159 1006 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1006 ~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1135)
..... ..|...|++++|+|++++|++++.||.|++||+.+++.+..+... ..+.+++|+| ++++
T Consensus 257 ~~~~~----~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-----------~~v~~~~~s~-d~~~ 320 (337)
T d1gxra_ 257 DKYQL----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-----------SSVLSCDISV-DDKY 320 (337)
T ss_dssp CEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-----------SCEEEEEECT-TSCE
T ss_pred ccccc----cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC-----------CCEEEEEEeC-CCCE
Confidence 44332 356889999999999999999999999999999999988765421 4456889999 7799
Q ss_pred EEEEecCCcEEEEec
Q 001159 1086 IALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1086 l~sg~~dg~v~~W~~ 1100 (1135)
|++|+.||+|++||+
T Consensus 321 l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 321 IVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEEeCCCeEEEEEE
Confidence 999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-34 Score=326.87 Aligned_cols=309 Identities=14% Similarity=0.243 Sum_probs=245.4
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
..+..++.|.+.|+|++|||||+ +||+|+ |+.|+|||+.+++.+.......... ............+|...|.+++|
T Consensus 53 ~~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~ 129 (388)
T d1erja_ 53 VELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCF 129 (388)
T ss_dssp EEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEE
T ss_pred eeeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEE
Confidence 34567778999999999999998 788887 8999999999987664311100000 00011112234578899999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
+|+|++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........+
T Consensus 130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 204 (388)
T d1erja_ 130 SPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIE 204 (388)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred CCCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccc
Confidence 9999999999999999999999886554 6778999999999999998 8899999999999999999888777655
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-------cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.. ..++.+.+. ++.+|++++.||.|++||..+......+ ..|...|.+++|+|++++|++++. ++.|
T Consensus 205 ~~-~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i 278 (388)
T d1erja_ 205 DG-VTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSV 278 (388)
T ss_dssp SC-EEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEE
T ss_pred cc-cccccccCC-CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcE
Confidence 44 555555543 4589999999999999999987765543 346778999999999999999975 8899
Q ss_pred EEEECCCCeE------------EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 570 VEWNESEGAI------------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 570 ~~wd~~~~~~------------~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
++||+.++.. ......|.. .|.+++|+|++++|++|+.||.|++||+.+++++.++.+|.. .|.+
T Consensus 279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~ 355 (388)
T d1erja_ 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVIS 355 (388)
T ss_dssp EEEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEE
T ss_pred EEEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEE
Confidence 9999976543 333445555 899999999999999999999999999999999999998755 7888
Q ss_pred EE------EcCCCCEEEEEECCCcEEEEEcC
Q 001159 638 LR------FNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 638 ~~------~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
++ |+|++.+|++|+.||+|+||+++
T Consensus 356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 76 46789999999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.4e-34 Score=322.89 Aligned_cols=335 Identities=15% Similarity=0.269 Sum_probs=250.7
Q ss_pred EEEEeCCCeEEEEEeCCCCceee-eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
.+.+..++...+|+....+.... .....+|.+.|++++|+|||+ +|++|+ |++|+|||+.+++.+..+..+.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK 107 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence 34566778889999776554321 123336999999999999999 899987 89999999999999988876654322
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.... + .......+...|.+++|+|++++|++++. ++.|++||..+++.+.
T Consensus 108 ~~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~ 157 (388)
T d1erja_ 108 DPEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVM 157 (388)
T ss_dssp -------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred cccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----cccccccccccccccc
Confidence 2110 0 01122346778999999999999999985 8899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEE
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 660 (1135)
.+.+|.. .|.++++++++..+++++.++.+++||..+.........+.. ..++.+.+ ++.+|++++.||.|++|+
T Consensus 158 ~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~ 233 (388)
T d1erja_ 158 ILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWD 233 (388)
T ss_dssp EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred ccccccc-cccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEee
Confidence 9999887 899999999999999999999999999999888877765533 45555555 889999999999999999
Q ss_pred cCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccc
Q 001159 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
..++. ....+....
T Consensus 234 ~~~~~-~~~~~~~~~----------------------------------------------------------------- 247 (388)
T d1erja_ 234 SETGF-LVERLDSEN----------------------------------------------------------------- 247 (388)
T ss_dssp TTTCC-EEEEEC--------------------------------------------------------------------
T ss_pred cccCc-cceeecccc-----------------------------------------------------------------
Confidence 87762 111110000
Q ss_pred ccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCe
Q 001159 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 741 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
.....
T Consensus 248 -------------------------~~~~~-------------------------------------------------- 252 (388)
T d1erja_ 248 -------------------------ESGTG-------------------------------------------------- 252 (388)
T ss_dssp ----------------------------CC--------------------------------------------------
T ss_pred -------------------------ccccC--------------------------------------------------
Confidence 00001
Q ss_pred eecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc------------cEEEEEeCCCCCeEE
Q 001159 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF------------KVMTMFMSPPPAATF 887 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~------------~~~~~~~~h~~~v~~ 887 (1135)
| ...|.+++|+|++++|++++ ||.|++||+.++ ........|...|++
T Consensus 253 ------------------h-~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 313 (388)
T d1erja_ 253 ------------------H-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313 (388)
T ss_dssp ------------------C-SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred ------------------C-CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEE
Confidence 3 44455555555555555554 455555554432 334556678899999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEE------cCCCCeEEEEcCCCcEEEEeCC
Q 001159 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF------SPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 888 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
++|+| ++++|++|+.||.|++||+.+++++.++++|.+.|+++++ +|++.+|||++.||+|+||+++
T Consensus 314 ~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999 8999999999999999999999999999999999999985 5789999999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-33 Score=308.19 Aligned_cols=282 Identities=14% Similarity=0.142 Sum_probs=230.9
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
+.. ..++++|+|+.|+.+. ++.+.+|++.. +..... +.+ | ...|++++|+|+
T Consensus 18 ~~~-~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------~~~~~~-~~~--H-~~~v~~~~~sp~ 69 (311)
T d1nr0a1 18 GTA-VVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------LTDTEI-YTE--H-SHQTTVAKTSPS 69 (311)
T ss_dssp TCC-CCCEECTTSSEEEEEE-TTEEEEEETTC----------------------SSCCEE-ECC--C-SSCEEEEEECTT
T ss_pred CCe-EEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------CceeEE-EcC--C-CCCEEEEEEeCC
Confidence 344 6789999999888764 55688887542 222221 223 7 899999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCccE--EEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccceeeEEecCcCCC
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEVKTKLKGHQNR 927 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~~~ 927 (1135)
|++||+|+ ||+|+|||+.+++. ...+.+|...|.+++|+| ++++|++++. +..+++|++++++....+.+|.+.
T Consensus 70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~ 148 (311)
T d1nr0a1 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148 (311)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 99999999 99999999988764 356788999999999999 8899998886 456999999999999999999999
Q ss_pred eEEEEEcCCCCe-EEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-C
Q 001159 928 ITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-K 1004 (1135)
Q Consensus 928 i~~l~~s~d~~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~ 1004 (1135)
|++++|+|++++ +++++.|+.|++||+.+++. .....+|. ..|.+++|+|+++++++ +.|+.|++||. +
T Consensus 149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-----~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----KSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----EEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccccccccceeeeccccccccccccccccccc-----cccccccc---ccccccccCcccccccccccccccccccccc
Confidence 999999999985 88899999999999998763 33444554 67999999999999999 57999999999 6
Q ss_pred CceeeccCC----CCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecC
Q 001159 1005 LECSRSWSP----KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1080 (1135)
Q Consensus 1005 ~~~~~~~~~----~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1135)
+.....+.. ..+|...|++++|+|++++|++|+.||.|+|||+++++++.++..+... ....+++.|+
T Consensus 221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-------~~~~~~~~~~- 292 (311)
T d1nr0a1 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-------EDQQLGIIWT- 292 (311)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-------GGCEEEEEEC-
T ss_pred ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-------cceEEEEEec-
Confidence 555554432 2467899999999999999999999999999999999999888755321 1334456664
Q ss_pred CCCCEEEEEecCCcEEEEecC
Q 001159 1081 SEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1081 ~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
+++|++++.||.|++||+.
T Consensus 293 --~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 --KQALVSISANGFINFVNPE 311 (311)
T ss_dssp --SSCEEEEETTCCEEEEETT
T ss_pred --CCEEEEEECCCEEEEEeCC
Confidence 3689999999999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-32 Score=306.32 Aligned_cols=292 Identities=19% Similarity=0.299 Sum_probs=256.6
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..++|. |.+.|++++|+|+++ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEe
Confidence 4567787 999999999999998 789999999999999999887654 5679999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
+|+++++++|+.|+.+.+|+....... .....+.+|...........+. .+..+..|.....|+............
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 999999999999999999998765432 2334567788877777766654 577888899999999888888888888
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+...+....+.+.. .++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. ++.|++||+.
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cceeEeeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeec
Confidence 88899999887765 89999999999999999999999999999999999999999999999975 8899999999
Q ss_pred CCeEEEEeecc-cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 576 EGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
....+..+... ....|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.. .|.+++|+|++++|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCC
Confidence 99888776533 233699999999999999999999999999999999999987754 899999999999999999999
Q ss_pred cEEEEE
Q 001159 655 GIKILA 660 (1135)
Q Consensus 655 ~i~iwd 660 (1135)
+|+|||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.7e-33 Score=317.01 Aligned_cols=290 Identities=13% Similarity=0.103 Sum_probs=233.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.++|+|++|||||+ +||+|+.||.|+|||+.+++.... ..+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence 36899999999998 788999999999999987653321 126789999999999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee----eeeecCCCCCee
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~h~~~v~ 501 (1135)
|+.|++|+|||+.++... ....+.+|...|.+++|+|+++ .|++|+.|++|++|++..... ......|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 999999999999876433 3335678999999999999999 899999999999999876543 334567999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCC------------------ceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+++|+|++ .+|++|+.|++|++||..... .......|...|.+++|+|++++|++++.
T Consensus 146 ~v~~~p~~--~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred cccccccc--cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 99998854 899999999999999976432 23345667778999999999999999975
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC---------------
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--------------- 628 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------- 628 (1135)
|+.|++||+.++..+..+..|.. +|.+++|+|+++++++| .|+.+++|..........+..
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred --CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence 88999999999999999999887 89999999999777655 577776665433221111100
Q ss_pred ------------------------CCCCCCcceEEEcCCC----CEEEEEECCCcEEEEEcCCC
Q 001159 629 ------------------------DGGLPASPRLRFNKEG----SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 629 ------------------------~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..|...|+++++.+.+ ..+++++.||.|+|||+++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 0134468888887744 36899999999999998654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-32 Score=302.44 Aligned_cols=242 Identities=21% Similarity=0.339 Sum_probs=196.2
Q ss_pred ccCCCcce-EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 404 LNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V-~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
|.||...| +|++| ++++||+|+.||+|+|||+.+++.+. .+.+|.++|++++|+|++ +|++|+.|++|++|
T Consensus 8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~iw 79 (355)
T d1nexb2 8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 79 (355)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEEE
T ss_pred ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccccc
Confidence 78998876 56555 68999999999999999999986655 788999999999999864 68999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-----------------------cC
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----------------------DA 539 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------------------~~ 539 (1135)
++...+.......+.............++..+++++.|+.|++||+......... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 9999988877766555555444444456689999999999999999765433211 11
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+...+ ..+.++++.++.+.. ++.|++||+.+++.+..+.++.. .+.++.+++++..+++++.|+.|++||+.+
T Consensus 160 ~~~~v--~~~~~~~~~~~~~~~----d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 232 (355)
T d1nexb2 160 HMASV--RTVSGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 232 (355)
T ss_dssp CSSCE--EEEEEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccccc--cccccccceeeeecc----cceeeeeecccccceeeeecccc-ccccccccccceeeecccccceEEeeeccc
Confidence 11122 345567888888874 78899999999999999888777 788999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+..+..+..|.. .|.++++++ ++|++++.||.|++||+.+.
T Consensus 233 ~~~~~~~~~h~~--~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 233 GELMYTLQGHTA--LVGLLRLSD--KFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp CCEEEEECCCSS--CCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccc--ccccccccc--ceeeeeeccccccccccccc
Confidence 999999987754 789998874 69999999999999998654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-32 Score=302.47 Aligned_cols=345 Identities=12% Similarity=0.125 Sum_probs=263.0
Q ss_pred eeEecCCCCcE-EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 534 RVDYDAPGNWC-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 534 ~~~~~~~~~~i-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
+.++.+|...| +|+++ ++++|++|+. |+.|++||+.+++.+.++.+|.+ .|.+++|+++ ++|++++.|+.|
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEET----TTEEEEEETTTTEEEEEEECCSS-CEEEEEEETT-TEEEEEETTCCE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCC-CEEEEEEcCC-CEEEEEeccccc
Confidence 44678897765 56554 6789999985 88999999999999999999988 8999999985 589999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcc
Q 001159 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1135)
++|+....+..................+.+++.++++++.|+.|++|++.+... ..........
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~--------------- 140 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEHDY--------------- 140 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------CC---------------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce-ecccccccee---------------
Confidence 999999998888776665544556677889999999999999999999977622 1111000000
Q ss_pred cccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccc
Q 001159 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1135)
Q Consensus 693 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 772 (1135)
T Consensus 141 -------------------------------------------------------------------------------- 140 (355)
T d1nexb2 141 -------------------------------------------------------------------------------- 140 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
......+........ .. . .| ...+ ..+.++
T Consensus 141 ----~~~~~~~~~~~~~~~-------~~----------------------------------~--~~-~~~v--~~~~~~ 170 (355)
T d1nexb2 141 ----PLVFHTPEENPYFVG-------VL----------------------------------R--GH-MASV--RTVSGH 170 (355)
T ss_dssp ----CEEESCTTTCTTEEE-------EE----------------------------------E--CC-SSCE--EEEEEE
T ss_pred ----ccceeccccccceee-------ee----------------------------------e--ec-cccc--cccccc
Confidence 000000000000000 00 0 02 3333 345668
Q ss_pred CCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEE
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 931 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l 931 (1135)
+++++++. |+.|++||+.+++.+....++...+.++.|+| ++.++++++.|+.|++||+.++..+..+.+|.+.|+++
T Consensus 171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~ 249 (355)
T d1nexb2 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249 (355)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE
T ss_pred cceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeecccccccccccccccccccc
Confidence 88999988 89999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCceeec
Q 001159 932 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRS 1010 (1135)
Q Consensus 932 ~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~ 1010 (1135)
+|+ +++|++++.||+|++||+.+...... . |.. ......+|++++.+++++.|+.|+|||+ +++.+..
T Consensus 250 ~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~----~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~ 318 (355)
T d1nexb2 250 RLS--DKFLVSAAADGSIRGWDANDYSRKFS----Y---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318 (355)
T ss_dssp EEC--SSEEEEECTTSEEEEEETTTCCEEEE----E---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCS
T ss_pred ccc--cceeeeeecccccccccccccceecc----c---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEE
Confidence 996 56999999999999999998763221 1 111 1223456788999998899999999999 6776644
Q ss_pred cCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 001159 1011 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 1011 ~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~ 1047 (1135)
.. .+|..+|.+++|+|+ .++++++.||.++||.+
T Consensus 319 ~~--~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 319 NI--LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CT--TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred Ee--cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 32 456889999999987 57888899999776654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.7e-32 Score=298.78 Aligned_cols=248 Identities=16% Similarity=0.246 Sum_probs=222.7
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 78999999999999999999999999999999999987655 7788999999999999999 899999999999999
Q ss_pred cCCC----eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.... .....+.+|............ ..+.....|.....|+............+...+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 7654 345567778877776665443 578889999999999988877777788888899999999999999998
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ++.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++|++.....+..+....+...|.+++
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence 75 88999999999999999999887 89999999999999999999999999999999988887666666899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+|++++|++|+.||.|++||+.++
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~ 302 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCC
Confidence 9999999999999999999999877
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.5e-32 Score=297.67 Aligned_cols=291 Identities=10% Similarity=0.091 Sum_probs=229.4
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
+++.+++. |.+.|++++|+|||+ +||+|+.||.|++||+.+++.+.. ...+|...|++++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~ 62 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIK 62 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEE
Confidence 35667777 999999999999998 789999999999999999876643 1346999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
|+|+|++ ++++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+.. +.....
T Consensus 63 ~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~-- 134 (299)
T d1nr0a2 63 TTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP-- 134 (299)
T ss_dssp ECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--
T ss_pred eecccee-ecccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc--cccccc--
Confidence 9999975 4566899999999876543222223456788899999999998 555554 6789999943 333332
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
....+.+++|+|++ .++++|+.||.|++||+++.+... ....|...|.+++|+|++++|++++. ++.|++||.
T Consensus 135 ~~~~~~~~~~s~~~--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~ 208 (299)
T d1nr0a2 135 ISYNSSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSV 208 (299)
T ss_dssp CSSCEEEEEECTTS--CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEG
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccc
Confidence 34467889998754 899999999999999998776543 45567889999999999999999875 788999999
Q ss_pred CCCeEEE---EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-CCCCcceEEEcCCCCEEEEE
Q 001159 575 SEGAIKR---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 575 ~~~~~~~---~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 650 (1135)
.++.... .+.+|.. .|.+++|+|++++|++|+.||.|++||+.++.......... +...+.++. ++++.+|+++
T Consensus 209 ~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~ 286 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSA 286 (299)
T ss_dssp GGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEE
T ss_pred ccccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEE
Confidence 8876553 3455665 89999999999999999999999999999876544443332 223455554 4567899999
Q ss_pred ECCCcEEEEEcC
Q 001159 651 TSDNGIKILANS 662 (1135)
Q Consensus 651 ~~dg~i~iwd~~ 662 (1135)
+.|++|++||+.
T Consensus 287 s~D~~i~iWdl~ 298 (299)
T d1nr0a2 287 GQDSNIKFWNVP 298 (299)
T ss_dssp ETTSCEEEEECC
T ss_pred eCCCEEEEEecc
Confidence 999999999973
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-31 Score=295.58 Aligned_cols=320 Identities=19% Similarity=0.289 Sum_probs=254.6
Q ss_pred eeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEE
Q 001159 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524 (1135)
Q Consensus 445 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~ 524 (1135)
....|+||.+.|.+ +++++|+ +|+||+.||+|+|||+.++++++++.+|.+.|.+++|++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 33478999999865 4667788 899999999999999999999999999999999999975 5899999999999
Q ss_pred EEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEE
Q 001159 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
+|+................+......+ ..+..+.. ++.+.+|+..+++....+..... . ...+.+....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 151 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-A--VRCVQYDGRRVV 151 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEET--TEEEEEET----TSEEEEEESSSCCEEEEEECCSS-C--EEEEEECSSCEE
T ss_pred ccccccccceecccccceeEeeeeccc--cccccccc----ceeEEEeecccccceeeeecccc-c--ceeeccccceee
Confidence 999988777766666666666555443 45555543 78899999999988887776554 2 233445567888
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCC
Q 001159 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (1135)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1135)
+++.|+.|++||....+.+..+..+. .....+.+++.++++++.||.|++||+..+. ....+
T Consensus 152 ~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~------------- 213 (342)
T d2ovrb2 152 SGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTL------------- 213 (342)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEEE-------------
T ss_pred eecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccce-eeeEe-------------
Confidence 99999999999999999888887663 3455666788899999999999999986551 10000
Q ss_pred CCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEe
Q 001159 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 764 (1135)
Q Consensus 685 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~ 764 (1135)
T Consensus 214 -------------------------------------------------------------------------------- 213 (342)
T d2ovrb2 214 -------------------------------------------------------------------------------- 213 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCce
Q 001159 765 RLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 844 (1135)
Q Consensus 765 ~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i 844 (1135)
.+ | ...+
T Consensus 214 ----------------------------------------------------------------------~~--~-~~~v 220 (342)
T d2ovrb2 214 ----------------------------------------------------------------------TG--H-QSLT 220 (342)
T ss_dssp ----------------------------------------------------------------------CC--C-CSCE
T ss_pred ----------------------------------------------------------------------cc--c-ccce
Confidence 00 3 4555
Q ss_pred EEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 845 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
.+++++ ++++++++ |+.|++||+...+....+.. |...+.++++++ +++++|+.||.|++||+.++++++.
T Consensus 221 ~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~ 295 (342)
T d2ovrb2 221 SGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRN 295 (342)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred eEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEE
Confidence 555554 46888888 89999999999888888765 445667777654 6999999999999999999998887
Q ss_pred ec-----CcCCCeEEEEEcCCCCeEEEEcCCCc----EEEEeCCC
Q 001159 921 LK-----GHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 956 (1135)
Q Consensus 921 l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iwd~~~ 956 (1135)
+. +|.+.|++++|+|++.+|++++.||+ |++||++.
T Consensus 296 ~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 63 67888999999999999999999986 99999874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.3e-32 Score=303.53 Aligned_cols=306 Identities=16% Similarity=0.183 Sum_probs=237.0
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe--EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 541 ~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
..+|+|++|+|||++|++++. ++.|++||..+++ .+..+.+|.+ .|.+++|+|++++|++++.|++|++||+.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCCC-CEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 357999999999999999874 7889999998775 5677888887 89999999999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCC
Q 001159 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 698 (1135)
++.....+....+...|.+++|+|+++.+++++.|+++++|++...... ....
T Consensus 82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~-~~~~-------------------------- 134 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW-WVCK-------------------------- 134 (371)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE-EEEE--------------------------
T ss_pred ccccccccccccccccccccccccccccceeecccCcceeeeeeccccc-cccc--------------------------
Confidence 8877666665555668999999999999999999999999998655110 0000
Q ss_pred ccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEE
Q 001159 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVR 778 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 778 (1135)
.....|...| .+
T Consensus 135 -------------------------------------------------------------------~~~~~~~~~v-~~ 146 (371)
T d1k8kc_ 135 -------------------------------------------------------------------HIKKPIRSTV-LS 146 (371)
T ss_dssp -------------------------------------------------------------------EECTTCCSCE-EE
T ss_pred -------------------------------------------------------------------cccccccccc-cc
Confidence 0001245566 99
Q ss_pred EEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecC--CCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 779 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP--PSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 779 ~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
++|+|++++|++++.|+.+++|+........... ...|+. ..+..... . ..| ...|.+++|+|+|++|
T Consensus 147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~--~~~-~~~v~~~~~s~~g~~l 216 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA------PTPWGSKMPFGELMFE-S--SSS-CGWVHGVCFSANGSRV 216 (371)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC------CBTTBSCCCTTCEEEE-C--CCC-SSCEEEEEECSSSSEE
T ss_pred ccccccccceeccccCcEEEEEeeccCccccccc------cccccccccceeeeee-c--cCc-cCcEEEEEeecccccc
Confidence 9999999999999999999999976543211111 111121 12222221 2 236 8899999999999999
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc--eeeE--------------
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKT-------------- 919 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~-------------- 919 (1135)
++++ |+.|++||+.+++.+..+..|..+|.+++|+| ++++|++|. |+.+++|..... ....
T Consensus 217 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
T d1k8kc_ 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294 (371)
T ss_dssp EEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred cccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccccc
Confidence 9998 89999999999999999999999999999999 888887654 777777654321 1100
Q ss_pred -------------------------EecCcCCCeEEEEEcCCC----CeEEEEcCCCcEEEEeCCCCc
Q 001159 920 -------------------------KLKGHQNRITGLAFSPTL----NALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 920 -------------------------~l~~h~~~i~~l~~s~d~----~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
....|.+.|+++++.+.+ ..++|+|.||.|++||+++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 012488899999998754 368999999999999997643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5e-31 Score=287.22 Aligned_cols=294 Identities=16% Similarity=0.165 Sum_probs=224.8
Q ss_pred CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCc
Q 001159 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 699 (1135)
|+..+.+.+|.. .|++++|+|++++|++|+.||+|++||+.++. ..+.+.
T Consensus 2 g~~~~~~~GH~~--~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSS---------------------------
T ss_pred CccceEcCCCCC--CcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEc---------------------------
Confidence 556777887754 89999999999999999999999999998772 221111
Q ss_pred cccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEE
Q 001159 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
..|...| .++
T Consensus 52 ---------------------------------------------------------------------~~h~~~v-~~v 61 (299)
T d1nr0a2 52 ---------------------------------------------------------------------DVHATMI-TGI 61 (299)
T ss_dssp ---------------------------------------------------------------------CSCSSCE-EEE
T ss_pred ---------------------------------------------------------------------CCCCCcE-EEE
Confidence 0145566 999
Q ss_pred EEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEE
Q 001159 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 859 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~ 859 (1135)
+|+|+|+ +++++.|+.+++|+........ .... ...+ ...+.++++++++++++++
T Consensus 62 ~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~-----------------~~~~-----~~~~-~~~~~~~~~s~~g~~~~~~ 117 (299)
T d1nr0a2 62 KTTSKGD-LFTVSWDDHLKVVPAGGSGVDS-----------------SKAV-----ANKL-SSQPLGLAVSADGDIAVAA 117 (299)
T ss_dssp EECTTSC-EEEEETTTEEEEECSSSSSSCT-----------------TSCC-----EEEC-SSCEEEEEECTTSSCEEEE
T ss_pred Eeeccce-eecccceeeEEEeccCCccccc-----------------cccc-----cccc-ccccccccccccccccccc
Confidence 9999997 6677789999999765321100 0000 0114 6788999999999999998
Q ss_pred eCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-EecCcCCCeEEEEEcCCCC
Q 001159 860 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 860 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i~~l~~s~d~~ 938 (1135)
.++.+++|+... ..... ....+++++|+| ++++|++|+.||.|++||+.+++... ....|.+.|++++|+|+++
T Consensus 118 ~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (299)
T d1nr0a2 118 CYKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 192 (299)
T ss_dssp ESSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccccccccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999543 32222 345689999999 89999999999999999999887554 3457899999999999999
Q ss_pred eEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCC
Q 001159 939 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDA 1016 (1135)
Q Consensus 939 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~ 1016 (1135)
+|++++.|+.|++||+.++.... ......+|. ..|++++|+|++++|++ +.|+.|++||+ +............
T Consensus 193 ~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 267 (299)
T d1nr0a2 193 FLVATDQSRKVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 267 (299)
T ss_dssp EEEEEETTSCEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred ccccccccccccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC
Confidence 99999999999999998876433 223344454 68999999999999999 57899999999 4443333322233
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 1017 LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1017 h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+...|.+++ ++++++|++++.||.|++||+.
T Consensus 268 ~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 268 AMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred CCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence 355676665 4667899999999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-30 Score=285.71 Aligned_cols=283 Identities=16% Similarity=0.267 Sum_probs=227.9
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.++.++++ |.+.|.+ +++++|+ +||||+.||+|+|||+.+++.+.+ +.+|...|.+++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~ 64 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQ 64 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEE
T ss_pred CCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEE
Confidence 34555666 9999865 4777888 689999999999999999987654 678999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
|+|+ +|++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+..+++....+..
T Consensus 65 ~~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~ 135 (342)
T d2ovrb2 65 MRDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMG 135 (342)
T ss_dssp EETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred eCCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeec
Confidence 9875 99999999999999998765433 3445566666665554 3 578888999999999999988887765
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+......... .. ..+++++.|+.|++||.........+..+...+..+. +++.++++++. |+.|++||++
T Consensus 136 ~~~~~~~~~~--~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~----dg~i~~~d~~ 205 (342)
T d2ovrb2 136 HVAAVRCVQY--DG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSL----DTSIRVWDVE 205 (342)
T ss_dssp CSSCEEEEEE--CS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEET----TSCEEEEETT
T ss_pred ccccceeecc--cc--ceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeC----CCeEEEeecc
Confidence 5554444332 22 6799999999999999998888888888877666554 46889999875 8899999999
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-CCCCcceEEEcCCCCEEEEEECCC
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
.++.+..+.+|.. .+.+++++ ++++++++.||.|++||+...+....+..+. +...+.++.+ +++++++++.||
T Consensus 206 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg 280 (342)
T d2ovrb2 206 TGNCIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDG 280 (342)
T ss_dssp TCCEEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTS
T ss_pred cceeeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCC
Confidence 9999999999887 77777776 5699999999999999999998888886543 3334444444 567999999999
Q ss_pred cEEEEEcCCC
Q 001159 655 GIKILANSDG 664 (1135)
Q Consensus 655 ~i~iwd~~~~ 664 (1135)
+|++||++++
T Consensus 281 ~i~iwd~~tg 290 (342)
T d2ovrb2 281 TVKLWDLKTG 290 (342)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEECCCC
Confidence 9999999888
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-30 Score=287.31 Aligned_cols=291 Identities=12% Similarity=0.198 Sum_probs=226.7
Q ss_pred CCeeEEEEecCCCeEEEEEecc-ceEEEEEcCCccccccCCceeecccccccchhhhhccCC-CcceEEEEEcC--CCCe
Q 001159 347 SNVMSMDFHPQQQTILLVGTNV-GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGP--DGLM 422 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp--d~~~ 422 (1135)
..+++++|+|+|+. +|.++.+ ..|+.|+....+.... ..+.+| ...|++++|+| +|++
T Consensus 18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCE
Confidence 36789999999995 5555433 3455666443322110 114566 56899999998 6789
Q ss_pred EEEEeCCCeEEEEEeCCCCceee-----eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQ-----HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~-----~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1135)
||+|+.||+|+|||+..+..... ...+..|.++|.+++|+++++.+..++++.++.+++|+..+++.+..+.+|.
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 99999999999999987654322 1234578899999999999995333344567899999999999999999999
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe---cCCCCcEEEEEEcCC-CCEEEEEecCCCCCCeEEEEE
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd 573 (1135)
..|.+++|+|..+ ..+++++.|+.+++||+...+..... ..+...|.+++|+|+ +.++++++. |+.|++||
T Consensus 160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd 234 (325)
T d1pgua1 160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFD 234 (325)
T ss_dssp SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEE
T ss_pred ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeee
Confidence 9999999998753 46889999999999998876655543 345668999999997 577888875 88899999
Q ss_pred CCCCeEEEEeecccCCceeEEEec---CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC-CCEEEE
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFD---TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-GSLLAV 649 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~ 649 (1135)
.++++.+..+.+|.. .+..+.|+ +++++|++++.|+.|+|||+.+++++..+..+.+...+..+++.+. +.+|++
T Consensus 235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred ecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence 999999999998876 55444444 6889999999999999999999999999987766544555555543 348899
Q ss_pred EECCCcEEEEEc
Q 001159 650 TTSDNGIKILAN 661 (1135)
Q Consensus 650 ~~~dg~i~iwd~ 661 (1135)
++.||.|++||+
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
Confidence 999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-29 Score=278.08 Aligned_cols=284 Identities=13% Similarity=0.130 Sum_probs=215.1
Q ss_pred EEEEEecCCcceeEecccc-eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec--CC
Q 001159 777 VRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK--ND 853 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~--dg 853 (1135)
++++|+|+|+.|+.++.+. .++.|+..... .... ..+.+ |....|++++|+| +|
T Consensus 21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--------------------~~~~-~~~~g--h~~~~v~~v~fsP~~~g 77 (325)
T d1pgua1 21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------------VPPV-VQFTG--HGSSVVTTVKFSPIKGS 77 (325)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCS--------------------SCSE-EEECT--TTTSCEEEEEECSSTTC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEeCCCCC--------------------ccce-EEEeC--CCCCCEEEEEEeeCCCC
Confidence 7899999999988776543 34555321110 0011 11222 4257899999998 67
Q ss_pred CEEEEEe-CCeEEEEECCCccE--------EEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccceeeEEec
Q 001159 854 SYVMSAS-GGKVSLFNMMTFKV--------MTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 854 ~~la~~~-dg~i~vwd~~~~~~--------~~~~~~h~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~l~ 922 (1135)
++||+|+ ||+|+|||+..++. ...+..|.++|.+++|++ ++++|++++. ++.+++|+.++++++..+.
T Consensus 78 ~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (325)
T d1pgua1 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVS 156 (325)
T ss_dssp CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECC
T ss_pred CEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeee
Confidence 8999999 99999999875432 233566889999999999 8888887764 6789999999999999999
Q ss_pred CcCCCeEEEEEcCCCCe-EEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC-CcEEEE-EecCeEE
Q 001159 923 GHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV-VHESQIS 999 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~v~ 999 (1135)
+|...|++++|+|++.+ +++++.|+.|++||+...+.... .....++. ..|.+++|+|| +.++++ +.|+.|+
T Consensus 157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~--~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~~i~ 231 (325)
T d1pgua1 157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS--DRTHHKQG---SFVRDVEFSPDSGEFVITVGSDRKIS 231 (325)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--ECSSSCTT---CCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred ecccccccccccccccceEEEeeccccccccccccccccee--cccccCCC---CccEEeeeccccceecccccccccee
Confidence 99999999999999875 77899999999999988764332 22333443 67899999997 577777 5799999
Q ss_pred EEec-CCceeeccCCCCCCCCCEEEEEEe---eCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEE
Q 001159 1000 VYDS-KLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV 1075 (1135)
Q Consensus 1000 vwd~-~~~~~~~~~~~~~h~~~i~~~~~s---~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1135)
+||+ +++.+..+.. |..++.++.|+ +||++|++++.|+.|+|||+++++++..+..+.. ......++
T Consensus 232 iwd~~~~~~~~~l~~---~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~ 302 (325)
T d1pgua1 232 CFDGKSGEFLKYIED---DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQQVG 302 (325)
T ss_dssp EEETTTCCEEEECCB---TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------CGGGCEEE
T ss_pred eeeeccccccccccc---cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC------cccCeEEE
Confidence 9999 7777776643 35555555555 7899999999999999999999999988765421 11233445
Q ss_pred EEecCCCCCEEEEEecCCcEEEEec
Q 001159 1076 IAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1076 ~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
+.+.+ +.+|++|+.||+|++||+
T Consensus 303 ~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 303 VVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEECC--CCEEEEEECCCEEEEEEC
Confidence 55554 358999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.7e-26 Score=246.81 Aligned_cols=268 Identities=21% Similarity=0.302 Sum_probs=218.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|...|+|++ +||+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 14 ~~~~V~c~~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~ 69 (293)
T d1p22a2 14 TSKGVYCLQ--YDDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 69 (293)
T ss_dssp SCCCEEEEE--CCSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCCEEEEE--EcCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--ccceee
Confidence 678899865 5787 799999999999999999887654 7789999999987 678999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee---eeeecCCCCCee
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 501 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 501 (1135)
+|+.|+.|++|++..+.... ....+... ...+.+... .++++..++.+.+||..+... ...+..|...|.
T Consensus 70 s~s~D~~i~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 70 TGSSDSTVRVWDVNTGEMLN---TLIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred cccccccccccccccccccc---cccccccc--ccccccccc--ceeecccccceeEeeccccccccccccccccccccc
Confidence 99999999999999876543 22223322 334445555 689999999999999887553 445677888998
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.+.+.+ ..+++++.|+.|++||+++.+....+..+...+..+.++ +.++++++. ++.|++||++++..+.
T Consensus 143 ~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 143 VVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACLR 212 (293)
T ss_dssp EEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceeee
Confidence 887754 578899999999999999999888898888888887775 568888875 8899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC---------CceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---------MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
.+.++.. .+.. +++++.+|++++.||.|++||+.. ...+..+..|.. .|.+++|+ +.+|++++.
T Consensus 213 ~~~~~~~-~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 213 VLEGHEE-LVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp EECCCSS-CEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--SSCEEECCS
T ss_pred eecccce-eeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEEc--CCEEEEEec
Confidence 9988776 5554 566788999999999999999743 346677777654 79999985 568999999
Q ss_pred CCcEEEEE
Q 001159 653 DNGIKILA 660 (1135)
Q Consensus 653 dg~i~iwd 660 (1135)
||+|++||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=6e-27 Score=266.83 Aligned_cols=368 Identities=11% Similarity=0.034 Sum_probs=268.8
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~ 439 (1135)
.++++.+.+|+|.|||..+++.+.. +..| ..+..++|||||++|++++.|+.|.+||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 4568889999999999999988764 3334 3699999999999999999999999999988
Q ss_pred CCce--eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEE
Q 001159 440 TGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1135)
Q Consensus 440 ~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 517 (1135)
++.. .......+|.+.+.+.+|+|||++ ++++++.+++|++||..+++.+..+..|...+..+.+.+.+
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-------- 163 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-------- 163 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC--------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC--------
Confidence 7642 222223356677788888999995 46889999999999999999999988776655555544432
Q ss_pred EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec
Q 001159 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 518 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s 597 (1135)
....+.++++|..++.... .++.|.+||..+++.........+..+..++|+
T Consensus 164 -------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 164 -------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp -------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred -------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence 2345678899988776553 378899999988876655554444468899999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCC---CCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhcc
Q 001159 598 TTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG---GLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 598 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 672 (1135)
|+|+++++++ .++.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|+..... ..
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----~~ 290 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----HP 290 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----CT
T ss_pred CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----cc
Confidence 9999888766 56789999999998888775432 112233334444444444433 26677777654320 00
Q ss_pred ccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccccccc
Q 001159 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~ 752 (1135)
T Consensus 291 -------------------------------------------------------------------------------- 290 (432)
T d1qksa2 291 -------------------------------------------------------------------------------- 290 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceec
Q 001159 753 PDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
.+...+ ....+++++..+++.+.++..++|.......
T Consensus 291 -----------------~~~~~v-~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------------------------- 327 (432)
T d1qksa2 291 -----------------DNAWKI-LDSFPALGGGSLFIKTHPNSQYLYVDATLNP------------------------- 327 (432)
T ss_dssp -----------------TTBTSE-EEEEECSCSCCCCEECCTTCSEEEEECTTCS-------------------------
T ss_pred -----------------ccccEE-EEEEEcCCCCeEEEEecCCccceeecccCCC-------------------------
Confidence 022344 7788999999999999999999996432100
Q ss_pred cCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe-----CCCc
Q 001159 833 DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-----EDSS 906 (1135)
Q Consensus 833 ~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-----~dg~ 906 (1135)
| ......+++ ||++.+++++ |+.+++|++.++.. +..|...|.+++||| ||++|+++. .+|.
T Consensus 328 ------~-~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~ 395 (432)
T d1qksa2 328 ------E-AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESA 395 (432)
T ss_dssp ------S-HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCE
T ss_pred ------C-CCeeeEEEE-EechhhcccccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCc
Confidence 2 223334555 9999999999 89999999866533 335777899999999 888775554 4688
Q ss_pred EEEEEcccceeeEEecCc
Q 001159 907 VQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h 924 (1135)
|.|||..+.++...+++.
T Consensus 396 i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 396 LVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEEETTTTEEEEEECCT
T ss_pred EEEEECCCceEEeEecCC
Confidence 999999999998888763
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4e-27 Score=254.25 Aligned_cols=279 Identities=11% Similarity=0.118 Sum_probs=217.1
Q ss_pred eeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEE
Q 001159 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524 (1135)
Q Consensus 445 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~ 524 (1135)
....+.||..+|++++|+| |+||+.||+|++||+.++. .+|...|.++++++. ..+++++.|++++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~---~~~~s~s~D~~v~ 70 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA---QEYSSISWDDTLK 70 (287)
T ss_dssp EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST---TCCEEEETTTEEE
T ss_pred eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC---CeEEEEeeccccc
Confidence 3448899999999999975 7999999999999987643 579999999998754 5689999999999
Q ss_pred EEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEE
Q 001159 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
+|++...+ ....+..+++++++..++++. +..+.+|+..++..+..+.... . ..+++++++.++
T Consensus 71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 134 (287)
T d1pgua2 71 VNGITKHE-------FGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNS--P--GSAVSLSQNYVA 134 (287)
T ss_dssp ETTEEEEE-------CSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSS--C--EEEEEECSSEEE
T ss_pred cccccccc-------cccceeeeeeccCCceEEEee-----cccceeeeccceeeeeeccccc--e--eeeeeccCccee
Confidence 99875421 234577888999988888765 5678999999999888877543 2 345677788888
Q ss_pred EEeCCC-eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCC
Q 001159 605 AAGDEF-QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 683 (1135)
Q Consensus 605 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 683 (1135)
+++.++ .+++|++...+....+... +...+.+++|+|++.+|++|+.||.|++||+.++......+.
T Consensus 135 v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------- 202 (287)
T d1pgua2 135 VGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA----------- 202 (287)
T ss_dssp EEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-----------
T ss_pred eeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeeccccccccccc-----------
Confidence 877664 7999999876665555432 234799999999999999999999999999877622111111
Q ss_pred CCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeE
Q 001159 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (1135)
Q Consensus 684 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~ 763 (1135)
T Consensus 203 -------------------------------------------------------------------------------- 202 (287)
T d1pgua2 203 -------------------------------------------------------------------------------- 202 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCc
Q 001159 764 LRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 843 (1135)
Q Consensus 764 ~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 843 (1135)
.|...| .+++|+|++...
T Consensus 203 ------~h~~~v-~~~~~~p~~~~~------------------------------------------------------- 220 (287)
T d1pgua2 203 ------FRTSKI-NAISWKPAEKGA------------------------------------------------------- 220 (287)
T ss_dssp ------CCSSCE-EEEEECCCC----------------------------------------------------------
T ss_pred ------cccccc-ceeeeccccccc-------------------------------------------------------
Confidence 145566 888888776521
Q ss_pred eEEEEeecCCCEEEEEe-CCeEEEEECCC-ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001159 844 AACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 912 (1135)
Q Consensus 844 i~~l~~s~dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 912 (1135)
..+.+++.++++|+ |++|+|||+.+ .+.+..+.+|...|++++|+| ++ .|++++.|+.|++|++
T Consensus 221 ---~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 221 ---NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred ---ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 22345778999999 99999999976 567777889999999999999 65 5888999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1e-26 Score=251.09 Aligned_cols=269 Identities=11% Similarity=0.143 Sum_probs=214.8
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.++++++. |..+|++++|+| |++|+.||.|++||+.++. .+|...|.+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~ 53 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLD 53 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC------------------------CCCCCCEEEEE
Confidence 56788998 999999999987 7899999999999987653 36999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
|++++ .+++++.|+++++|++... .+...+.++++.+++. .+++++ ++.+.+|+..+++.+..+..
T Consensus 54 ~~~~~-~~~s~s~D~~v~~w~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 54 NSKAQ-EYSSISWDDTLKVNGITKH----------EFGSQPKVASANNDGF--TAVLTN-DDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp CCSTT-CCEEEETTTEEEETTEEEE----------ECSSCEEEEEECSSSE--EEEEET-TSEEEEEETTTCCEEEEEEC
T ss_pred ecCCC-eEEEEeecccccccccccc----------ccccceeeeeeccCCc--eEEEee-cccceeeeccceeeeeeccc
Confidence 99765 5789999999999997652 1334577889998886 555554 66789999999998888764
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcC-CeEEEEeCcCCCceeEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
...+.++ ++.+ ..+++++.| +.+++|++...+....+. .+...+++++|+|++.+|++++. ++.|++||
T Consensus 120 -~~~~~~~--~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d 190 (287)
T d1pgua2 120 -NSPGSAV--SLSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD 190 (287)
T ss_dssp -SSCEEEE--EECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred -cceeeee--eccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----ccccccee
Confidence 3445444 4443 566666666 579999987666555544 35678999999999999999975 88899999
Q ss_pred CCCCeEEEE-eecccCCceeEEEecCC----------CCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCcceEEEc
Q 001159 574 ESEGAIKRT-YSGFRKRSLGVVQFDTT----------RNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 574 ~~~~~~~~~-~~~~~~~~v~~i~~s~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
..++..... +.+|.. .|.+++|+|. +.++++|+.|+.|++||+.+ .+.+..+.+|. ..|.+++|+
T Consensus 191 ~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~~ 267 (287)
T d1pgua2 191 LQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVNNLLWE 267 (287)
T ss_dssp TTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST--TCEEEEEEE
T ss_pred eccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC--CCeEEEEEC
Confidence 999987654 456665 8999999874 46899999999999999977 55666666554 489999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001159 642 KEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~ 661 (1135)
|++ .+++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCeEEEEEE
Confidence 986 6889999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.8e-27 Score=266.99 Aligned_cols=342 Identities=15% Similarity=0.184 Sum_probs=221.5
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce------EEEEeCCCCCCCcceE------EEcC-CCCEE
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRL------RFNK-EGSLL 647 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~------~~~~-~~~~l 647 (1135)
...++|.. .|.++++++ +++++++.|++|++||..+.+. ......+ ...+..+ ..+. ++.++
T Consensus 8 ~~~~~H~~-~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 8 NAGKAHDA-DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--KSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EESSCSSS-CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--TTCEEEEEEEEEEETTTEEEEEE
T ss_pred ecCCcccC-ccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeec--cCCceEeeeEeeeccCCCCCcEE
Confidence 34567777 899999864 6999999999999999765431 1122222 1122111 1111 34578
Q ss_pred EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 001159 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++++.||.|++|++..... ...+..+....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~-~~~~~~~~~~~------------------------------------------------- 112 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDE-TKKVIFEKLDL------------------------------------------------- 112 (393)
T ss_dssp EEEETTSCEEEEEEEECTT-TCCEEEEEECC-------------------------------------------------
T ss_pred EEEeCCCcEEEEEccCCCc-eeeeeccccce-------------------------------------------------
Confidence 8999999999999865521 11111110000
Q ss_pred CCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC-----CcceeEecccceeeeEEe
Q 001159 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS-----GLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d-----g~~l~~~~~dg~i~iw~~ 802 (1135)
+....+...+ ..+++.++ +.++++++.||.+++|++
T Consensus 113 --------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~ 153 (393)
T d1sq9a_ 113 --------------------------------------LDSDMKKHSF-WALKWGASNDRLLSHRLVATDVKGTTYIWKF 153 (393)
T ss_dssp --------------------------------------SCTTGGGSCE-EEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred --------------------------------------eeeccCCCce-EEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence 0000122233 55555554 467888999999999998
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEE---
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF--- 878 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~--- 878 (1135)
........ ..... ................+ ...+.+++|+||+ +||+|+ |++|+|||+.+++++..+
T Consensus 154 ~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~ 224 (393)
T d1sq9a_ 154 HPFADESN-----SLTLN--WSPTLELQGTVESPMTP-SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ 224 (393)
T ss_dssp ESSSSHHH-----HTTTC--CCCEEEEEEEECCSSSS-CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred ecCCcccc-----eeeee--eccceecccceecccCC-CCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc
Confidence 64321000 00000 00000000111111124 6778999999998 888998 999999999999887654
Q ss_pred ---eCCCCCeEEEEEecCCCcEEEEEeCCCc---EEEEEcccceeeEEec-------------CcCCCeEEEEEcCCCCe
Q 001159 879 ---MSPPPAATFLAFHPQDNNIIAIGMEDSS---VQIYNVRVDEVKTKLK-------------GHQNRITGLAFSPTLNA 939 (1135)
Q Consensus 879 ---~~h~~~v~~l~~sp~~~~~lasg~~dg~---v~iwd~~~~~~~~~l~-------------~h~~~i~~l~~s~d~~~ 939 (1135)
.+|...|.+++|+| ++++|++|+.|++ |++||+.+++.+..+. +|.+.|++|+|+||+++
T Consensus 225 ~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~ 303 (393)
T d1sq9a_ 225 HSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303 (393)
T ss_dssp C---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE
T ss_pred cccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCe
Confidence 46889999999999 8999999999874 9999999988777663 89999999999999999
Q ss_pred EEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCC-CCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCC
Q 001159 940 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL-VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP 1018 (1135)
Q Consensus 940 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~ 1018 (1135)
|+|+|.|++|++||+++++. +..+.+|.... .....++|+|++..++++....++.|.- +..... .
T Consensus 304 l~S~s~D~~v~vWd~~~g~~-----~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~----- 370 (393)
T d1sq9a_ 304 LCSAGWDGKLRFWDVKTKER-----ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK-GWRSGM--G----- 370 (393)
T ss_dssp EEEEETTSEEEEEETTTTEE-----EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT-TTSBST--T-----
T ss_pred eEEECCCCEEEEEECCCCCE-----EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECcc-Cceecc--c-----
Confidence 99999999999999999874 44455665211 2234688999998876543222222221 111000 0
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 001159 1019 APISSAIYSCDGLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 1019 ~~i~~~~~s~d~~~l~~~~~dg~I~vwd~ 1047 (1135)
......+++++.|+.|++|.-
T Consensus 371 --------~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 371 --------ADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp --------CTTSCEEEEEETTTEEEEEEE
T ss_pred --------cCCCCEEEEEEcCCeEEEEeC
Confidence 012445888899999999973
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.4e-26 Score=257.37 Aligned_cols=267 Identities=9% Similarity=0.073 Sum_probs=200.2
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce---eeeeEeecccCCEEEEEEe---c-CC-CeEEEEEEcC
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFA---H-PN-KQLCIVTCGD 475 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s---~-d~-~~~~l~s~~~ 475 (1135)
.++|.+.|.++++++ ++|++|+.|++|+|||..+.... ........|...+..+... + ++ ...++++++.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 568999999999864 69999999999999998765421 1112233455554443332 1 11 1126789999
Q ss_pred CCcEEEEEcCCCeeeeee----------cCCCCCeeEEEeeccCC---ccEEEEEEcCCeEEEEeCcCCCc---------
Q 001159 476 DKMIKVWDVVAGRKQYTF----------EGHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGS--------- 533 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~~----------~~h~~~v~~i~~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~--------- 533 (1135)
||.|++|++........+ ..+...+..+++.+..+ +.++++++.||++++|++.....
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 999999998654322111 12455677888776543 47899999999999999853221
Q ss_pred ---------eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee------cccCCceeEEEecC
Q 001159 534 ---------RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS------GFRKRSLGVVQFDT 598 (1135)
Q Consensus 534 ---------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~i~~s~ 598 (1135)
......+...+.+++|+|++ +|++++. |+.|++||+.+++.+..+. +|.. .|.+++|+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~sp 241 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFSP 241 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEECS
T ss_pred ccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccc-eEEEccccc
Confidence 00112334468899999998 7888874 8999999999999877654 4555 899999999
Q ss_pred CCCEEEEEeCCC---eEEEEECCCCceEEEEeCC-----------CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 599 TRNRFLAAGDEF---QIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 599 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+|++|++|+.|+ .|++||+.+++.+..+... +|...|++++|+|++++|++++.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 999999999886 4999999999988887521 34457999999999999999999999999999999
Q ss_pred chhhhhccccccccc
Q 001159 665 VRLLRMLEGRAMDKN 679 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~ 679 (1135)
+++..+.+|...+.
T Consensus 322 -~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 322 -ERITTLNMHCDDIE 335 (393)
T ss_dssp -EEEEEEECCGGGCS
T ss_pred -CEEEEECCcCCccc
Confidence 78888999987653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.6e-26 Score=253.00 Aligned_cols=254 Identities=11% Similarity=0.017 Sum_probs=190.9
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+..+|.+.|++|+|+|++++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. +|++|+.|++|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 36789999999999999999999999999999999887665544455579999999999998665 79999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEE-eeccCCccEEEEEEcCCeEEEEeCcCCCceeEe----cCC--CCcEEEEEEcCCCCE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVC-PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY----DAP--GNWCTMMAYSADGTR 555 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~--~~~i~~~~~s~~~~~ 555 (1135)
++..+........+...+.... +.+.. ..+++++.|+++++||++........ ..+ ........+.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGD--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETT--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred eccccccccccccccccccccccccccc--ccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence 9998887777766555544443 33333 78999999999999998765443322 111 223455667788889
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEE---eecccCCceeEEE-ecCCCCEEEEEeCCCeEEEEECCCCceE------EE
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRT---YSGFRKRSLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNML------TT 625 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~---~~~~~~~~v~~i~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~------~~ 625 (1135)
+++++. ++.|++||+..+..... ...... .+.+.. +..++..+++++.||.+.+|+....... ..
T Consensus 163 ~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~ 237 (342)
T d1yfqa_ 163 LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred eeeecC----CCcEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence 998875 88999999987654322 222222 344444 4556788999999999999998653211 11
Q ss_pred Ee-------CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 626 VD-------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 626 ~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+. ...+...|++++|+|++++|++|+.||.|++||+.++
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 11 1123346789999999999999999999999999887
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.1e-25 Score=237.78 Aligned_cols=235 Identities=15% Similarity=0.270 Sum_probs=191.6
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|...|+|++| ||++||+|+.||+|+|||+.+++.+. .+.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 4568889998765 89999999999999999999987665 78899999999887 566 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee---EecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
+..+........+......... .. ..++++..++.+++||........ .+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF--NN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC--CT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc--cc--cceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999888777655555444432 22 689999999999999998766533 4556677787777654 4566665
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
. ++.|++||.++++.+..+.++.. .+..+.++ +.++++++.||.|++||+.+.+.+.....+.. .+ ..+
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred C----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--ee--eec
Confidence 4 88999999999999999998876 67666665 57899999999999999999999988876543 34 356
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCC
Q 001159 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 ~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++++.+|++++.||.|++||+.+.
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 678899999999999999997544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.1e-26 Score=253.51 Aligned_cols=292 Identities=8% Similarity=0.081 Sum_probs=213.0
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
++++..+ |.+.|++++|||+|+ +||+|+.||+|+|||+.++..... + ....+|..+|.+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~--~--------------~~~~~h~~~V~~v~f 64 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD--L--------------LQSLRYKHPLLCCNF 64 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE--E--------------EEEEECSSCEEEEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE--E--------------EEecCCCCCEEEEEE
Confidence 3455555 899999999999998 789999999999999987654321 0 012369999999999
Q ss_pred cCCC-CeEEEEeCCCeEEEEEeCCCCceeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee----
Q 001159 417 GPDG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---- 490 (1135)
Q Consensus 417 spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---- 490 (1135)
+|++ .+|++|+.||.|++|++..+.... .... +........+.+++. .+++++.|+++++||++++...
T Consensus 65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~ 139 (342)
T d1yfqa_ 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred eCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence 9864 589999999999999999876554 2223 333445556666666 7999999999999998754332
Q ss_pred eeecCCC--CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee---EecCCCCcEEEEEEc-CCCCEEEEEecCCC
Q 001159 491 YTFEGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYS-ADGTRLFSCGTSKE 564 (1135)
Q Consensus 491 ~~~~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s-~~~~~l~~~~~~~~ 564 (1135)
.....+. .......+.+.. ..+++++.|+.|++||+....... ........+.+..+. .++..+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 214 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTMDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--- 214 (342)
T ss_dssp EESCSSSSSSCCCEEEEEECS--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred cccccccccceeeeeeeeccC--CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence 2222332 233444454444 789999999999999998766543 223334455555554 46677777764
Q ss_pred CCCeEEEEECCCCeEE------EEe---------ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 565 GESHLVEWNESEGAIK------RTY---------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~------~~~---------~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.+.+|+....... ..+ .+|. ..+.+++|+|++++|++|+.||.|++||+.+++.+..+..+
T Consensus 215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~ 292 (342)
T d1yfqa_ 215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred -CCeEEEEEecCCcceeeccccceeeeeeeccCCCccc-ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 888999987643211 111 1222 26889999999999999999999999999999998887543
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
. .+..++|+|+++++++++.|+.+++|..
T Consensus 293 ~---~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 293 N---EDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp S---SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred C---CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 2 4567889999999999999988877754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=8.9e-27 Score=260.74 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=160.7
Q ss_pred eeEEEEec-CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 349 VMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 349 V~~v~~sp-~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
+..-.||| ||+ ++|+++ +|.|++||+.++..+. .+|...|.+++|||||++|++++
T Consensus 5 ~~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~ 61 (360)
T d1k32a3 5 KFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHG 61 (360)
T ss_dssp GGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEE
T ss_pred hhcccccCCCCC-EEEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEE
Confidence 44578999 998 566665 6899999998876543 25899999999999999999877
Q ss_pred CCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEe
Q 001159 428 SKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 428 ~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1135)
.+. .|++||..+++.. .+..|...|.+++|+||++ +|++++.++.+++|++.+++....+..|...+.+++|
T Consensus 62 ~~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (360)
T d1k32a3 62 TREGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135 (360)
T ss_dssp ETTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred cCCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhh
Confidence 654 7999999986543 4668999999999999999 8999999999999999999988888888888888888
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+|++ ++|+.++.++... +. ...++.+++||..+++.......
T Consensus 136 spdg--~~la~~~~~~~~~--------------------------------~~----~~~~~~~~v~d~~~~~~~~~~~~ 177 (360)
T d1k32a3 136 SDNS--RFIAYGFPLKHGE--------------------------------TD----GYVMQAIHVYDMEGRKIFAATTE 177 (360)
T ss_dssp CTTS--CEEEEEEEECSST--------------------------------TC----SCCEEEEEEEETTTTEEEECSCS
T ss_pred ccce--eeeeeeccccccc--------------------------------ee----eccccceeeeccccCceeeeccc
Confidence 7754 6666544322200 00 12356789999998876554443
Q ss_pred ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
.. .+..++|+|+|++|++++.++.+++|+.....
T Consensus 178 -~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 178 -NS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp -SS-BEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred -cc-ccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 33 67889999999999999999999999976543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=7.3e-25 Score=250.60 Aligned_cols=363 Identities=10% Similarity=0.027 Sum_probs=243.9
Q ss_pred EecCCC-eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001159 354 FHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 354 ~sp~g~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 432 (1135)
+++|.+ .++++.+.||.|+|||+.+++.+.+ +..| ..+..++|||||++|++++.|++|
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCCE
Confidence 444433 3567788899999999999988764 4444 458999999999999999999999
Q ss_pred EEEEeCCCCcee--eeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCC
Q 001159 433 HLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 433 ~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 510 (1135)
++||+.+++... ......+|...+.+++|+|||++ +++++..++++++||..++.++..+..|...+..+.+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence 999999887532 12223357777888899999995 456777899999999999999999988887777676665542
Q ss_pred ccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc
Q 001159 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
...+..+ +++..++.... +.+.+.+++...+.............
T Consensus 165 -~~~i~~s--------------------------------~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 165 -VAAIIAS--------------------------------HEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp -EEEEEEC--------------------------------SSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred -eeEEEEC--------------------------------CCCCEEEEecC---CCCeEEEEEeccccceeeEEeccCCc
Confidence 2333334 44444443321 23445555555444322221122236
Q ss_pred eeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE-EE--EEECCCcEEEEEcCCCch
Q 001159 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LA--VTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 591 v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~--~~~~dg~i~iwd~~~~~~ 666 (1135)
+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.|+.+.+|+.....
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~- 287 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN- 287 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT-
T ss_pred cEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc-
Confidence 88899999999988865 667899999999999888875544333344444433221 11 12235555555543220
Q ss_pred hhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccc
Q 001159 667 LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746 (1135)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1135)
T Consensus 288 -------------------------------------------------------------------------------- 287 (426)
T d1hzua2 288 -------------------------------------------------------------------------------- 287 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCC
Q 001159 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 826 (1135)
Q Consensus 747 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1135)
+.+| .
T Consensus 288 --------------------------------------------------~~~~-------------------------~ 292 (426)
T d1hzua2 288 --------------------------------------------------HPQY-------------------------A 292 (426)
T ss_dssp --------------------------------------------------CTTT-------------------------B
T ss_pred --------------------------------------------------cccc-------------------------c
Confidence 0000 0
Q ss_pred CcceeccCCCCCCCCCceEEEEeecCCCEEEE-------Ee-CCeEEEEECCCccEEEEEe---------CCCCCeEEEE
Q 001159 827 GTLMTNDINESKPTEESAACIALSKNDSYVMS-------AS-GGKVSLFNMMTFKVMTMFM---------SPPPAATFLA 889 (1135)
Q Consensus 827 ~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~-------~~-dg~i~vwd~~~~~~~~~~~---------~h~~~v~~l~ 889 (1135)
++... .+.+ | ...+..++|+||+++|++ ++ +++|+|||+.+++...++. .|...|.+++
T Consensus 293 ~~~~~-~l~g--~-~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~ 368 (426)
T d1hzua2 293 WKKVA-ELQG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 368 (426)
T ss_dssp TSEEE-EEEC--S-SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred ceEeE-EEec--C-CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEE
Confidence 00000 0111 5 667778889999998885 33 6889999999988766542 4566799999
Q ss_pred EecCCCcEEE-EE----eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeE
Q 001159 890 FHPQDNNIIA-IG----MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL 940 (1135)
Q Consensus 890 ~sp~~~~~la-sg----~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l 940 (1135)
||| ||++++ ++ +.+|.|+|||..+++....++++. .++|+|++-
T Consensus 369 fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 369 YNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp ECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred ECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 999 787664 33 357889999999999999998774 346777764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1e-24 Score=248.32 Aligned_cols=354 Identities=10% Similarity=0.061 Sum_probs=255.0
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce--EEEEeC-CCCCCCcceEEEc
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDA-DGGLPASPRLRFN 641 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-~~~~~~v~~~~~~ 641 (1135)
.++.|.+||..+++++..+..+. .+..++|+|||+++++++.|+.|++||+.+++. ...+.. ..+...+.+..|+
T Consensus 40 d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp TTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred CCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence 38899999999999999998775 589999999999999999999999999988764 333332 1222234556678
Q ss_pred CCCCEE-EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCc
Q 001159 642 KEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1135)
Q Consensus 642 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 720 (1135)
|||++| ++++.++++++||..++ +..+.+..+.......
T Consensus 118 pDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~--------------------------------------- 157 (432)
T d1qksa2 118 WEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQ--------------------------------------- 157 (432)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTC---------------------------------------
T ss_pred CCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccce---------------------------------------
Confidence 899976 67888999999999988 5555544433221100
Q ss_pred cccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeE-ecccceeee
Q 001159 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLA-LASNAVHKL 799 (1135)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~-~~~dg~i~i 799 (1135)
. + .+.... ..+.++++|..+++ ...++.+.+
T Consensus 158 ----------~--------------------------------~-----~~~~~~-~~v~~s~dg~~~~vs~~~~~~i~~ 189 (432)
T d1qksa2 158 ----------E--------------------------------Y-----HPEPRV-AAILASHYRPEFIVNVKETGKILL 189 (432)
T ss_dssp ----------C--------------------------------E-----ESCCCE-EEEEECSSSSEEEEEETTTTEEEE
T ss_pred ----------e--------------------------------c-----cCCCce-eEEEECCCCCEEEEEEccCCeEEE
Confidence 0 0 012223 77889999987654 455788888
Q ss_pred EEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEE
Q 001159 800 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM 877 (1135)
Q Consensus 800 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~ 877 (1135)
|+....+. ..++. +. + ...+..++|+|||+++++++ ++.+.++|..+++.+..
T Consensus 190 ~d~~~~~~-----------~~~~~----------i~---~-g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 190 VDYTDLNN-----------LKTTE----------IS---A-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp EETTCSSE-----------EEEEE----------EE---C-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEccCCCc-----------ceEEE----------Ec---c-cCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence 86532110 01111 11 2 55678999999999998887 57899999999988877
Q ss_pred EeC-----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 878 FMS-----PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 878 ~~~-----h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
+.. |........+.. .+...++.. .++.|.+|+..+.. +..|...|....++|++..+++++.+.+.++
T Consensus 245 ~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~l 319 (432)
T d1qksa2 245 EDTGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYL 319 (432)
T ss_dssp EECSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred eccCccccccCcccceecCC-CCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccce
Confidence 653 334445555554 555555543 47889999866543 4567788999999999999999999999999
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeC
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCD 1029 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d 1029 (1135)
|+..+... +. .....+++ ||++.+++ +.|+.+++|++ ++..+ ..|...|.+++||||
T Consensus 320 w~~~~~~~-----------~~---~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l------~~~~~~v~~~~fS~D 378 (432)
T d1qksa2 320 YVDATLNP-----------EA---EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI------TEGQPRVVQGEFNKD 378 (432)
T ss_dssp EEECTTCS-----------SH---HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC------CSSCCEEEEEEECTT
T ss_pred eecccCCC-----------CC---CeeeEEEE-EechhhcccccCCceEeccccccccc------CCCCCcEEEeEECCC
Confidence 98765331 11 11234555 99999999 57899999998 44222 234667999999999
Q ss_pred CCEEEEEe-----CCCeEEEEECCCceeeeeeCCc
Q 001159 1030 GLLVYAGF-----CDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1030 ~~~l~~~~-----~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
|++++.+. .+|.|.|||..|+++...+...
T Consensus 379 G~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 379 GTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 99886654 4789999999999998887643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=3.6e-25 Score=247.50 Aligned_cols=310 Identities=10% Similarity=0.009 Sum_probs=224.2
Q ss_pred eeecC-CCCCCccc------cCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccc-eEEEEEcCCccccccCCcee
Q 001159 318 VSFAG-VAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKV 389 (1135)
Q Consensus 318 v~~s~-~g~~~~~~------~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg-~i~iwd~~~~~~~~~~~~~~ 389 (1135)
-.||| ||+.++.. .++...+... .+.|...|.+++|||||++|++++..+| .|++||+.+++...
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~-~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~------ 80 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK------ 80 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE------
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEE-EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE------
Confidence 44666 66665543 3344444444 4579999999999999996555555544 79999999876543
Q ss_pred ecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEE
Q 001159 390 WDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 390 ~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~ 469 (1135)
+.+|...|.+++|+|||++|++++.++.+++|++.++.... .+..|...+.+++|+|||+ +
T Consensus 81 --------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~--~ 141 (360)
T d1k32a3 81 --------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSR--F 141 (360)
T ss_dssp --------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSC--E
T ss_pred --------------eeCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhcccee--e
Confidence 56799999999999999999999999999999999887554 6678899999999999999 5
Q ss_pred EEEE----------cCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-----
Q 001159 470 IVTC----------GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----- 534 (1135)
Q Consensus 470 l~s~----------~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----- 534 (1135)
|+.+ ..++.+++||+.+++... +..|...+..++|+|++ +.|++++.++.+++||.......
T Consensus 142 la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg--~~l~~~s~~~~~~~~d~~~~~~~~~~~~ 218 (360)
T d1k32a3 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVS 218 (360)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTS--CEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred eeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCC--CEEEEEeCCCceEcccccccceeecccc
Confidence 6643 345679999998887654 44577888899998854 89999999999999987654322
Q ss_pred --eEecCCCCcEEEEEEcCCCCEEEEEecCCCC-CCeEEEEECCCCeEEEEeecccCCceeEEEecCCC---CEEEEEeC
Q 001159 535 --VDYDAPGNWCTMMAYSADGTRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGD 608 (1135)
Q Consensus 535 --~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~~~~~ 608 (1135)
..+..+...+..+.|++++..++.+.....+ ...+..++...+.. ..+..+.+ .+..+.+...+ .++++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
T d1k32a3 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLES-SILIYSVPVHGEFAAYYQGAPE 296 (360)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSS-EEEEEECCCCCSHHHHHHCCCC
T ss_pred ceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCC-CceEEEEEecCCCeeEEEecCC
Confidence 2233334444445667777666544321111 12344445454443 23333333 44555555443 45677889
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.|++||+.+++... +.. .|.+++|+|||++|++++.||.|++||+.++
T Consensus 297 ~~~i~~~d~~~~~~~~-~~~-----~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 297 KGVLLKYDVKTRKVTE-VKN-----NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp CEEEEEEETTTCCEEE-EEE-----EEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred CCEEEEEECCCCeEEE-ecC-----CcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999876543 221 4789999999999999999999999999888
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=2.6e-23 Score=237.55 Aligned_cols=343 Identities=13% Similarity=0.085 Sum_probs=237.3
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe--e---cc
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY--S---GF 586 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~--~---~~ 586 (1135)
-++++.+.||+|++||+.+++.+..+..+. .+..++|||||+++++++. ++.|++||+.+++..... . +|
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEEEEeCCCCC
Confidence 466888899999999999999988888764 5899999999999998874 789999999988754332 2 33
Q ss_pred cCCceeEEEecCCCCEEEE-EeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE-EEEEECCCcEEEEEcCCC
Q 001159 587 RKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~ 664 (1135)
.. .+.+++|+|||+++++ +..++.+++||..+++++..+..+.. .+..+.+.+++.. .++.+.|+...++.....
T Consensus 108 ~~-~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~ 184 (426)
T d1hzua2 108 RS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 184 (426)
T ss_dssp EE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred cc-eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence 33 4566788899998766 45889999999999999998887644 4566777776654 345555666555543221
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
..
T Consensus 185 ~~------------------------------------------------------------------------------ 186 (426)
T d1hzua2 185 GK------------------------------------------------------------------------------ 186 (426)
T ss_dssp TE------------------------------------------------------------------------------
T ss_pred Ce------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecC
Q 001159 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 824 (1135)
Q Consensus 745 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
+. +....++..+.. ..
T Consensus 187 --i~------------------------------~~~~~~~~~~~~---------~~----------------------- 202 (426)
T d1hzua2 187 --VL------------------------------LVNYKDIDNLTV---------TS----------------------- 202 (426)
T ss_dssp --EE------------------------------EEECSSSSSCEE---------EE-----------------------
T ss_pred --EE------------------------------EEEeccccceee---------EE-----------------------
Confidence 00 000000100000 00
Q ss_pred CCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCC--CCCeEEEEEecCCCcEE--
Q 001159 825 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNII-- 898 (1135)
Q Consensus 825 ~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l-- 898 (1135)
.. + ...+..++|+|++++++++. +..+.+++..+++.+...... ........+.......+
T Consensus 203 ---------~~---~-~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 203 ---------IG---A-APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp ---------EE---C-CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred ---------ec---c-CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence 00 2 56678899999999988887 578999999999888776532 22233444433122222
Q ss_pred EEEeCCCcEEEEEccc-------ceeeEEecCcCCCeEEEEEcCCCCeEEE-------EcCCCcEEEEeCCCCceeceee
Q 001159 899 AIGMEDSSVQIYNVRV-------DEVKTKLKGHQNRITGLAFSPTLNALVS-------SGADAQLCMWSIDKWEKLKSRF 964 (1135)
Q Consensus 899 asg~~dg~v~iwd~~~-------~~~~~~l~~h~~~i~~l~~s~d~~~l~s-------~~~D~~i~iwd~~~~~~~~~~~ 964 (1135)
++.+.|+.+.+|+... ++....+.+|...+.+++|+||+++|++ ++.|++|+|||+.+++......
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~ 349 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 349 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence 2334577888887653 4677889999999999999999999994 4567889999998876432110
Q ss_pred eecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE-----eCC
Q 001159 965 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG-----FCD 1039 (1135)
Q Consensus 965 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~-----~~d 1039 (1135)
. +..+.....|...|.+++|||||++++.+ +.+
T Consensus 350 -~-----------------------------------------~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~ 387 (426)
T d1hzua2 350 -P-----------------------------------------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDS 387 (426)
T ss_dssp -C-----------------------------------------HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSC
T ss_pred -c-----------------------------------------cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCC
Confidence 0 00011122346678999999999977543 468
Q ss_pred CeEEEEECCCceeeeeeCCc
Q 001159 1040 GAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1040 g~I~vwd~~~~~~~~~~~~~ 1059 (1135)
|.|+|||..|++....+...
T Consensus 388 ~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 388 SALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp CEEEEEETTTTEEEEEECCT
T ss_pred CeEEEEECCCCeEEEEECCC
Confidence 89999999999999887754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=8.8e-21 Score=205.33 Aligned_cols=275 Identities=10% Similarity=0.082 Sum_probs=217.8
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE-EEeCCCeEEEEEeC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la-s~~~dg~i~iwd~~ 438 (1135)
++.++++.|++|.|||+.+++.+.+ +. ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4566788899999999999987653 11 234578999999999875 56678999999999
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s 518 (1135)
+++.+. .+..|. .+..++|++++.. .++++..++.+.+|+..+++....+.. .....+++++|++. ..++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSS-EEEEEET
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeeccc-cccceEEEeecCCC-eeeeeec
Confidence 987655 555554 4789999999986 567888899999999999998888864 45677888888653 3456667
Q ss_pred cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 519 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.++.+.+|+..+......+..+ ..+..++++|+++.++++.. ..+.+.+|+.........+..+. ....+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred cccceeeeeccccceeeecccC-CCceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeeccc
Confidence 7899999999888777666544 45778999999999988764 35678899988888877776654 467799999
Q ss_pred CCCEEEEEe---CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCchhhhhc
Q 001159 599 TRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 599 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
+++.++.++ .++.|++||+.+++.+..+..+. .+.+++|+|||++| ++++.++.|++||+.++ ++++.+
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~ 282 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM 282 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred cccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEE
Confidence 999887654 44789999999999998887543 47899999999987 56677999999999998 444444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=5.7e-20 Score=198.82 Aligned_cols=268 Identities=13% Similarity=0.094 Sum_probs=211.0
Q ss_pred cccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC
Q 001159 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 408 (1135)
+..+|..+++.++++.....+..++|||||++++++++.++.|.+||+.+++.+.. +..|.
T Consensus 14 v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~~ 74 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAGS 74 (301)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECSS
T ss_pred EEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eeccc
Confidence 44557778889999998888999999999997778888899999999999887653 23333
Q ss_pred cceEEEEEcCCCCeEEEE-eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
.+..++|+++++.++++ ..++.+.+|+..+++... .+. +...+.+++|+|++.. +++++..++.+.+|+..++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred -cccccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeecccc
Confidence 46889999999976654 567789999999876554 343 4556889999999996 5678888999999999999
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcC-CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
..+..+..+ ..+..++++|+. ..+++++.+ +.+.+|+........... ....+..++++++++.++.+..+ ..+
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~-~~~ 223 (301)
T d1l0qa2 149 AVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD-KYF 223 (301)
T ss_dssp EEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred ceeeecccC-CCceEEEeeccc--cceeeecccccccccccccceeeeeccc-ccCCcceeecccccccccccccc-cee
Confidence 988888644 457788888765 566666654 667777766554444444 34567789999999998876543 236
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEE-EEeCCCeEEEEECCCCceEEEEeC
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+.|.+||..+++.+..+..+. .+..++|+|||++|+ +++.++.|++||+.+++.+.++..
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 789999999999998887654 578999999999874 677899999999999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.2e-20 Score=205.83 Aligned_cols=301 Identities=11% Similarity=0.073 Sum_probs=212.2
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC-
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 588 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~- 588 (1135)
+++++++.|++|++||+.+.+.+..+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999999888777654 446789999999999876542 378899999999999988876543
Q ss_pred ---CceeEEEecCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 589 ---RSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 589 ---~~v~~i~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
..+..++|+|+++++++++ .++.+.+||..+++....+.... .+..++|+|+|+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 1345689999999998875 46789999999999988887543 4788999999999998865
Q ss_pred CcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcc
Q 001159 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
.+.+||..++ .....+..+..... ..+.
T Consensus 155 -~~~~~d~~~~-~~~~~~~~~~~~~~--------------------------------------------------~~~~ 182 (337)
T d1pbyb_ 155 -DLHVMDPEAG-TLVEDKPIQSWEAE--------------------------------------------------TYAQ 182 (337)
T ss_dssp -SEEEEETTTT-EEEEEECSTTTTTT--------------------------------------------------TBCC
T ss_pred -CcceeeeecC-cEEEEeecCCcccc--------------------------------------------------ceec
Confidence 4778998877 33333322111000 0000
Q ss_pred cccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcc
Q 001159 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 813 (1135)
Q Consensus 734 ~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 813 (1135)
+++. .+|-... ..+.... .......+.........++.+.+|++
T Consensus 183 ~~~~----------~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 226 (337)
T d1pbyb_ 183 PDVL----------AVWNQHE--------------SSGVMAT-PFYTARKDIDPADPTAYRTGLLTMDL----------- 226 (337)
T ss_dssp CBCC----------CCCCCCT--------------TTTEEEE-EEEEEBTTSCTTSGGGEEEEEEEEET-----------
T ss_pred CCcc----------eeecccc--------------ccceeee-eeeeeeeccceeeecccCccEEEEEc-----------
Confidence 1110 0010000 0000001 22222333444445555566666654
Q ss_pred cccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecC
Q 001159 814 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 893 (1135)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~ 893 (1135)
.++......... + ...+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|
T Consensus 227 -----------~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~- 289 (337)
T d1pbyb_ 227 -----------ETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST- 289 (337)
T ss_dssp -----------TTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-
T ss_pred -----------CCCcEEEEEecC--C-CcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-
Confidence 333322222222 4 6778889999999998765 6899999999999998886 667789999999
Q ss_pred CCcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 894 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
||++|++++.|++|++||+.+++.+.+++..
T Consensus 290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence 8999999999999999999999999887643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=2.7e-20 Score=205.91 Aligned_cols=313 Identities=9% Similarity=-0.026 Sum_probs=213.2
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++++ +++++++++.|++|.+||+.+.+....+.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..
T Consensus 3 a~~~--~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 3 ALKA--GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCT--TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEE
T ss_pred cCCC--CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeee
Confidence 4544 448999999999999999999988877764 4556789999999999876653 378899999999999888
Q ss_pred eecccCC-----ceeEEEecCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 583 YSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 583 ~~~~~~~-----~v~~i~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
+...... .+..++|+|||+++++++ .++.+.+|+..+++....+..+.....+..+.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 7654321 345789999999998765 47789999998877654443322223466777888887
Q ss_pred EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc
Q 001159 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
+++++ +.+.+|+..++ +....+..+....
T Consensus 158 ~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------------------------- 186 (346)
T d1jmxb_ 158 LYVAG---PDIYKMDVKTG-KYTVALPLRNWNR----------------------------------------------- 186 (346)
T ss_dssp EEEES---SSEEEECTTTC-CEEEEECSTTCCC-----------------------------------------------
T ss_pred EEEeC---CcceEEEccCC-CEEEEEecCCCcc-----------------------------------------------
Confidence 66542 46889998877 3333332221100
Q ss_pred ccCCCCcccccccccccc--cccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 726 GTIDGSRLVDVKPRVAED--VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
...+.+++..+.... ++.+.++. ....+.+....+.+...++.+.+|++
T Consensus 187 ---~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (346)
T d1jmxb_ 187 ---KGYSAPDVLYFWPHQSPRHEFSMLY-------------------------TIARFKDDKQDPATADLLYGYLSVDL- 237 (346)
T ss_dssp ---TTBCCCBCCCCCCCCCTTCEEEEEE-------------------------EEEEC-------CCCEEEEEEEEEET-
T ss_pred ---ceEEeccccEEEEEecCCCceEeee-------------------------eeeeeccCceeEeeccCCceEEEEEC-
Confidence 011122222211111 12222221 12222333444455555666666654
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCC
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 883 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~ 883 (1135)
.++......... | ...+..+++++++.+++...++.|.+||..+++.+..+. +..
T Consensus 238 ---------------------~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~ 292 (346)
T d1jmxb_ 238 ---------------------KTGKTHTQEFAD--L-TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDH 292 (346)
T ss_dssp ---------------------TTCCEEEEEEEE--C-SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSS
T ss_pred ---------------------CCCceEEEEeec--c-cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCC
Confidence 333332222222 4 778889999999999998888899999999999998886 456
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 927 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 927 (1135)
.+.+++|+| ||++|++++.|+.|++||+.+++.+.+++.+.+.
T Consensus 293 ~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 293 TYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp CCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 799999999 8999999999999999999999999998855543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=3.7e-20 Score=203.93 Aligned_cols=293 Identities=14% Similarity=0.133 Sum_probs=198.0
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCCchhhhhccccccccc
Q 001159 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 679 (1135)
+++++++.|++|++||+.+++.+.++..+.....+..++|+|||++++ +++.++.|.+||+.++ +....+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~-- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTT--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCc--
Confidence 579999999999999999999999998765555678999999999874 5667899999999988 333322221100
Q ss_pred cCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCcc
Q 001159 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~ 759 (1135)
T Consensus 79 -------------------------------------------------------------------------------- 78 (337)
T d1pbyb_ 79 -------------------------------------------------------------------------------- 78 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCC
Q 001159 760 QIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 839 (1135)
.+...+ ..++|+||+++++++..+.....|..
T Consensus 79 ----------~~~~~~-~~v~~s~dg~~l~~~~~~~~~~~~~~------------------------------------- 110 (337)
T d1pbyb_ 79 ----------ERVKSL-FGAALSPDGKTLAIYESPVRLELTHF------------------------------------- 110 (337)
T ss_dssp ----------EEEECT-TCEEECTTSSEEEEEEEEEEECSSCE-------------------------------------
T ss_pred ----------ccccce-eeEEEcCCCcEEEEeecCCcceeeec-------------------------------------
Confidence 011122 56889999998888776654443311
Q ss_pred CCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE
Q 001159 840 TEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 919 (1135)
Q Consensus 840 ~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 919 (1135)
...++.+.+||..+++....+.. ...+.+++|+| +++++++++.+ +.+||..+++...
T Consensus 111 ------------------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~ 168 (337)
T d1pbyb_ 111 ------------------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVE 168 (337)
T ss_dssp ------------------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEE
T ss_pred ------------------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEE
Confidence 11245566666666666666653 33466667776 66666665433 5566666666555
Q ss_pred EecCcCCCeEEEEEcC------------------------CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCC
Q 001159 920 KLKGHQNRITGLAFSP------------------------TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 975 (1135)
Q Consensus 920 ~l~~h~~~i~~l~~s~------------------------d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
.+..+... ....+++ +.......+.++.+.+|+..++......... +.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--- 240 (337)
T d1pbyb_ 169 DKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD--- 240 (337)
T ss_dssp EECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---
T ss_pred EeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---
Confidence 54432211 1111111 2222223344556889999887744332221 11
Q ss_pred CCceEEEECCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeee
Q 001159 976 VGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1054 (1135)
Q Consensus 976 ~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~ 1054 (1135)
..+..+++++++.++++. ++.|++||+ +++.+..+.. ...+.+++|||||++|++++.||.|+|||.++++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 241 VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 356788999999988764 689999999 6766666532 4568899999999999999999999999999999999
Q ss_pred eeCCc
Q 001159 1055 RIGPS 1059 (1135)
Q Consensus 1055 ~~~~~ 1059 (1135)
++...
T Consensus 316 ~i~~~ 320 (337)
T d1pbyb_ 316 QVDLP 320 (337)
T ss_dssp EEECG
T ss_pred EEECC
Confidence 88754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=1.1e-20 Score=209.13 Aligned_cols=328 Identities=7% Similarity=-0.028 Sum_probs=218.5
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCCchhhhhcc
Q 001159 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 594 i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 672 (1135)
++|+++++++++++.+++|.+||+.+++.+.++..+... .+.+++|+|||++++ ++..++.|.+||+.++ +....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeec
Confidence 468999999999999999999999999999998754332 468999999999875 4557899999999888 3322221
Q ss_pred ccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccccccc
Q 001159 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~ 752 (1135)
.....
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (346)
T d1jmxb_ 80 LSSVP--------------------------------------------------------------------------- 84 (346)
T ss_dssp SCCST---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 11000
Q ss_pred CCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceec
Q 001159 753 PDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
......+ ..++|+|||+++++...+.....|.... ....+.+|+..++.....
T Consensus 85 ----------------~~~~~~~-~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~ 137 (346)
T d1jmxb_ 85 ----------------GEVGRSM-YSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKP 137 (346)
T ss_dssp ----------------TEEEECS-SCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCC
T ss_pred ----------------cccCCce-EEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeE
Confidence 0011122 6788999999888776543333221110 001123334433332211
Q ss_pred cCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEE
Q 001159 833 DINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYN 911 (1135)
Q Consensus 833 ~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd 911 (1135)
.... .. ...+..+.+++++++++. ++.+.+|++.+++.+..+..+. ....+.++| ++..+ +.+..++.+.+++
T Consensus 138 ~~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 211 (346)
T d1jmxb_ 138 VRTF-PM-PRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAP-DVLYFWPHQSPRHEFSMLY 211 (346)
T ss_dssp SEEE-EC-CSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCC-BCCCCCCCCCTTCEEEEEE
T ss_pred EEee-ec-cCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEec-cccEEEEEecCCCceEeee
Confidence 1000 01 345566777888876664 4668999999999988887553 456677888 55444 4444455555554
Q ss_pred cccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEE
Q 001159 912 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 991 (1135)
Q Consensus 912 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 991 (1135)
.. ..+.+....++++..+..+.+|++.++......... +. ..+..+.+++++.+++
T Consensus 212 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~ 267 (346)
T d1jmxb_ 212 TI-----------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQI 267 (346)
T ss_dssp EE-----------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEE
T ss_pred ee-----------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEE
Confidence 21 122334445666667778999999987754332221 11 3567889999999998
Q ss_pred EEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 992 VVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 992 ~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
...++.|.+||. +++.+..+.. ...+.+++|||||++|++++.||.|+|||+++++.+.++..+
T Consensus 268 ~~~~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 268 YGVLNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEEESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EecCCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 888889999999 6666665543 346889999999999999999999999999999999988754
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=7.2e-18 Score=188.49 Aligned_cols=333 Identities=11% Similarity=-0.002 Sum_probs=223.3
Q ss_pred cCCCcceEEEEEcCCCCeEEEEe-----CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEE------
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC------ 473 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~------ 473 (1135)
..+..++.+++++|||+.+++.. ..+.|.+||..+++.+. .+..+..+ .++|+|||+ +|+++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCCc
Confidence 45888999999999999987752 34679999999987665 45555543 799999999 55554
Q ss_pred ----cCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEE
Q 001159 474 ----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549 (1135)
Q Consensus 474 ----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 549 (1135)
..++.|.+||+.+++.+..+..+......+...| ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEE
Confidence 3467899999999988887776655544443222 13467
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEE-EEEeCCCeEEEEECCCCceEEEEeC
Q 001159 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+++++.++.... +.++.+.+|+..+++...... ...++.++|+++.+ ++.+.|+.+.+|+...++.......
T Consensus 133 s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQF--AAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EeCCCcEEEEEE--cCCCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 788887766543 335678899988877665544 34568899998765 5678999999999998887766543
Q ss_pred CC----CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccccc
Q 001159 629 DG----GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 629 ~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 704 (1135)
.. .......+.+++++.+ +..+.++.+.+|+..++.. .....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~-------------------------------- 251 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGA-TNKAP-------------------------------- 251 (373)
T ss_pred eccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeE-EEEEe--------------------------------
Confidence 21 1112234556666644 4566788999998776521 00000
Q ss_pred ccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC
Q 001159 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d 784 (1135)
|+. ..... ....+.|.
T Consensus 252 ---------------------------------------------~~~------------------~~~~~-~~~~~~~~ 267 (373)
T d2madh_ 252 ---------------------------------------------IDA------------------LSGGR-KADTWRPG 267 (373)
T ss_pred ---------------------------------------------ecc------------------ccCcE-EeeeeccC
Confidence 000 00000 22222222
Q ss_pred CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCe
Q 001159 785 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 863 (1135)
Q Consensus 785 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~ 863 (1135)
+...++.+.++... ..+..++..++... ++.
T Consensus 268 ~~~~~~~~~d~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~ 299 (373)
T d2madh_ 268 GWQQVAYLKSSDGI------------------------------------------------YLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred cceeeEEecCCCeE------------------------------------------------EEecCCCceEEeecCCCe
Confidence 22222222221111 11222444445554 789
Q ss_pred EEEEECCCccEEEEEeCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC
Q 001159 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 864 i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 936 (1135)
+.+||..+++.+..+. +...+.+++|+| ||+ ++++++.|+.|++||+.+++.+.++.++....+.|++.++
T Consensus 300 v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 300 VTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 9999999999998876 667899999999 776 4578899999999999999999999999888888888654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=4.6e-17 Score=181.87 Aligned_cols=292 Identities=8% Similarity=-0.008 Sum_probs=205.0
Q ss_pred CCCCeeEEEEecCCCeEEEEE----eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCC
Q 001159 345 QGSNVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~ 420 (1135)
+..++..++++|||++++++. +..+.|.+||..+++.+.+ +..+. ...++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHSG 77 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCC--CccEEEcCCC
Confidence 567899999999999766552 2346799999999987653 22333 2369999999
Q ss_pred CeEEEEe----------CCCeEEEEEeCCCCceeeeeEeecccCCE-------EEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 421 LMLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 421 ~~las~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
++|++++ .++.|.+||..+++.+. .+..+.... ..+.|+++++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence 9999875 35789999999987654 333343322 457899999975556667778999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC------CCcEEEEEEcCCCCEEE
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~ 557 (1135)
...++...... ...++.++|++. ..+++.+.|+.+.+|+............. ......+.+++++.+++
T Consensus 155 ~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (373)
T d2madh_ 155 QGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred ccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence 88877654443 456778888764 46788999999999999887665543321 22344556677766665
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEE--eecccC---------CceeEEEecCCCCEEE----------EEeCCCeEEEEE
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRT--YSGFRK---------RSLGVVQFDTTRNRFL----------AAGDEFQIKFWD 616 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~--~~~~~~---------~~v~~i~~s~~~~~l~----------~~~~dg~i~iwd 616 (1135)
... ++.+.+|+..++..... ...... .....+++++++..++ +...++.+.+||
T Consensus 230 ~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d 304 (373)
T d2madh_ 230 PVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred ecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence 542 67788898877654322 111111 1223355666655444 445677899999
Q ss_pred CCCCceEEEEeCCCCCCCcceEEEcCCCCE--EEEEECCCcEEEEEcCCCchhhhhcccc
Q 001159 617 MDNMNMLTTVDADGGLPASPRLRFNKEGSL--LAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (1135)
..+++.+..+.... .+..++|+|||+. +++++.|++|++||+.++ +.++.+..+
T Consensus 305 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~~ 360 (373)
T d2madh_ 305 GLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTVEL 360 (373)
T ss_pred CCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEECCC
Confidence 99999998886432 5789999999984 467888999999999999 556666543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=3.4e-17 Score=181.52 Aligned_cols=202 Identities=13% Similarity=-0.004 Sum_probs=128.6
Q ss_pred EEEEEcCCCCeEEEEe-----CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEE--------EcCCCc
Q 001159 412 NRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--------CGDDKM 478 (1135)
Q Consensus 412 ~~v~~spd~~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s--------~~~d~~ 478 (1135)
.-.+.+|||+.+++.. .++.|.+||..+++.+. .+..+.. ..++|+|||+.+++++ ++.|+.
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~ 79 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDY 79 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence 3346789999998763 45679999999987665 4444443 3799999999533332 345778
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
|++||+.+++.+..+..+......+. .....++|+++++++++
T Consensus 80 v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~~v 122 (355)
T d2bbkh_ 80 VEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTLLF 122 (355)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCeeEE
Confidence 88888888887766654432221110 01123578899998887
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCC------ceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCC
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKR------SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~------~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
+.. ..+..+.+|+..+++.+..+..+... ....+.+++++..++... .++.+.+++...... ..
T Consensus 123 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~ 193 (355)
T d2bbkh_ 123 YQF--SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------ED 193 (355)
T ss_dssp EEC--SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------TT
T ss_pred ecC--CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------ee
Confidence 653 33667899999999988877654421 112244455554444322 233333333332211 12
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
...+....+.+++..++.++.++.+.+|+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred cceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence 224566788888889999999999999998766
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2e-16 Score=173.39 Aligned_cols=282 Identities=12% Similarity=0.109 Sum_probs=186.9
Q ss_pred eeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEE
Q 001159 788 LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVS 865 (1135)
Q Consensus 788 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~ 865 (1135)
++++..++.|++|++.... +..+..... | ...+..++|||||++|++++ |+.|+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~--------------------~l~~~~~~~---~-~~~v~~la~spDG~~L~v~~~~d~~i~ 62 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEG--------------------ALTLTQVVD---V-PGQVQPMVVSPDKRYLYVGVRPEFRVL 62 (333)
T ss_dssp EEEEGGGTEEEEEEECTTS--------------------CEEEEEEEE---C-SSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred EEECCCCCcEEEEEEcCCC--------------------CeEEEEEEc---C-CCCEeEEEEeCCCCEEEEEECCCCeEE
Confidence 4677789999999875321 101111111 4 77889999999999997665 79999
Q ss_pred EEECCCccEEEEE---eCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcccceeeEE--ecCcCCCeEEEEEcCCCCe
Q 001159 866 LFNMMTFKVMTMF---MSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTK--LKGHQNRITGLAFSPTLNA 939 (1135)
Q Consensus 866 vwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~--l~~h~~~i~~l~~s~d~~~ 939 (1135)
+|++.......++ ..+...+..++|+| ||++|++++. ++.|.+|+......... ...+...+.++.++||+++
T Consensus 63 ~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~ 141 (333)
T d1ri6a_ 63 AYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT 141 (333)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred EEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeeccee
Confidence 9999865433332 22455678899999 8888888875 67899999886654433 4456777899999999998
Q ss_pred EEEEc-CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecC--Cce------e
Q 001159 940 LVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSK--LEC------S 1008 (1135)
Q Consensus 940 l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~--~~~------~ 1008 (1135)
+++++ .+..|.+|+.................. .......++|++++.+++.. ..+...+|+.. ... +
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 219 (333)
T d1ri6a_ 142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 219 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred eeccccccceeeEEEeccCCcceeeeceeeeee--cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeee
Confidence 88776 445699999877554332221111111 11345789999999998874 45677888762 111 1
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEE-EeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~-~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
...............+++++|+++++. +..++.+.+|++........+..+. .....+..++|+| ||++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~~a~sp-DGk~l~ 291 (333)
T d1ri6a_ 220 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-------PTETQPRGFNVDH-SGKYLI 291 (333)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-------ECSSSCCCEEECT-TSSEEE
T ss_pred eeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-------CCCCCeeEEEEeC-CCCEEE
Confidence 111122223456778999999997655 4567899999988654443332211 1224456789999 778776
Q ss_pred EEe-cCCcEEEEecCCCc
Q 001159 1088 LGM-SDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 sg~-~dg~v~~W~~~~~~ 1104 (1135)
+++ .+++|++|++....
T Consensus 292 va~~~~~~v~v~~id~~t 309 (333)
T d1ri6a_ 292 AAGQKSHHISVYEIVGEQ 309 (333)
T ss_dssp EECTTTCEEEEEEEETTT
T ss_pred EEECCCCeEEEEEEECCC
Confidence 655 56899999764433
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.3e-16 Score=169.89 Aligned_cols=279 Identities=13% Similarity=0.136 Sum_probs=188.1
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe-CCCeEEEEEeC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~-~dg~i~iwd~~ 438 (1135)
.++++++.|++|+||+++....+.. + ....|.+.|.+++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~--~---------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTL--T---------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEE--E---------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEE--E---------------EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 3567888999999999976543221 0 0124778899999999999996655 58999999998
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCCcEEEEEcCCCeeeee--ecCCCCCeeEEEeeccCCccEEE
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~ 515 (1135)
.............+...+.+++|+|||+ +|++++ .++.|.+|+......... ...+...+.++.++|++ ++++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc--eeee
Confidence 7654332222233455678899999999 455554 678999999877654433 34566778888998865 6666
Q ss_pred EEE-cCCeEEEEeCcCCCceeE------ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC--e--EEEEee
Q 001159 516 STA-IDGKIKAWLYDYLGSRVD------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--A--IKRTYS 584 (1135)
Q Consensus 516 s~s-~dg~i~iwd~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~--~~~~~~ 584 (1135)
.++ .+..|.+|+......... ..........++|++++..++.... ..+...+|+.... . ......
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeee
Confidence 665 556799999876554331 2233456788999999999887653 2455667765432 1 122221
Q ss_pred cc-----cCCceeEEEecCCCCEEEEE-eCCCeEEEEECCCCceEEEEeC-CCCCCCcceEEEcCCCCEEEEEE-CCCcE
Q 001159 585 GF-----RKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTT-SDNGI 656 (1135)
Q Consensus 585 ~~-----~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 656 (1135)
.. .......+++++++++++.. ..++.+.+|++........... ......+..++|+|||++|++++ .++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 11 11245668899999987765 4678999999876543322221 11122567899999999887765 46899
Q ss_pred EEEEcC
Q 001159 657 KILANS 662 (1135)
Q Consensus 657 ~iwd~~ 662 (1135)
++|++.
T Consensus 301 ~v~~id 306 (333)
T d1ri6a_ 301 SVYEIV 306 (333)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999553
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=8.4e-17 Score=178.24 Aligned_cols=292 Identities=13% Similarity=0.083 Sum_probs=195.6
Q ss_pred CeeEEEEecCCCeEEEEE----eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
++...+.+|||++++++. ..++.|.+||..+++.+.+ +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 455557799999765553 3456799999999987653 2222 33479999999998
Q ss_pred EEEe----------CCCeEEEEEeCCCCceeeeeEeeccc----CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee
Q 001159 424 GVAF----------SKHIVHLYTYNPTGELRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 424 as~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~----~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
++++ .|+.|.+||..+++..........+. .....++|+++++.++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8753 47899999999987665332111111 223568999999965555557788999999999998
Q ss_pred eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec------CCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------APGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+..+..+..... .. ... ...++.+.|+....+............ .+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~-~~--~~~--~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHI-FP--TAP--DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEE-EE--EET--TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceE-ee--cCC--cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 888765432211 11 111 344555666666665544433332221 12223445677788888887754
Q ss_pred CCCCeEEEEECCCCeEEE--EeecccC---------CceeEEEecCCCCEEEEEeCC----------CeEEEEECCCCce
Q 001159 564 EGESHLVEWNESEGAIKR--TYSGFRK---------RSLGVVQFDTTRNRFLAAGDE----------FQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~--~~~~~~~---------~~v~~i~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~ 622 (1135)
++.+++|+...+.... ....+.. .....+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 7889999998775422 2221110 123458899999988876533 3699999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCC--EEEEEECCCcEEEEEcCCCchhhhhccc
Q 001159 623 LTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 673 (1135)
+..+.... .+.+++|+|||+ ++++++.|+.|++||..++ +.++.+.+
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~ 341 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ 341 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeC
Confidence 88886532 478999999997 4556677999999999999 55555544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.58 E-value=1.1e-15 Score=166.42 Aligned_cols=328 Identities=12% Similarity=0.046 Sum_probs=203.8
Q ss_pred EEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
..++|++.+|.|++||+.+++.++++.- |+|++. . ..|..+.+.+++. .......-..|.......
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t 77 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISMT 77 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEE
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCccee
Confidence 3688999999999999999999988742 555432 1 1122222211111 011111122333445556
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCE--EEEEeCCC---------------
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGDEF--------------- 610 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~--l~~~~~dg--------------- 610 (1135)
..+|||++|++... .+.+|.++|+.+++....+..........++|+|+|+. +++.+.+.
T Consensus 78 ~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 78 DGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp TTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred cccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 66899999988753 47789999999999988877655557899999999984 44444332
Q ss_pred --eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc-EEEEEcCCCchhhhhccccccccccCCCCCCC
Q 001159 611 --QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG-IKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 611 --~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
.+..+|..+.+....+.... ....++|+|+|+++++.+.+.. +..++..+. ...
T Consensus 155 ~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~------------------- 211 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR------------------- 211 (441)
T ss_dssp EEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB-------------------
T ss_pred cceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCc-ceE-------------------
Confidence 23568888888887776543 3678999999999988876532 111111110 000
Q ss_pred CCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecC
Q 001159 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~ 767 (1135)
..+.+.+..
T Consensus 212 ---------------------------------------------------------d~i~v~n~p-------------- 220 (441)
T d1qnia2 212 ---------------------------------------------------------DWVVVFNVE-------------- 220 (441)
T ss_dssp ---------------------------------------------------------CEEEEEEHH--------------
T ss_pred ---------------------------------------------------------EEEEeCCcc--------------
Confidence 011111110
Q ss_pred CcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 768 DSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
..+.++++|+++.+ +.++.+.++.. ....+... ++. ......+
T Consensus 221 ---------~~~~~~~dGk~~~v-~~~~v~vvd~~----------------------~~~~v~~~-IPv----gksPhGv 263 (441)
T d1qnia2 221 ---------RIAAAVKAGNFKTI-GDSKVPVVDGR----------------------GESEFTRY-IPV----PKNPHGL 263 (441)
T ss_dssp ---------HHHHHHHTTCCBCC-TTCCCCEEECS----------------------SSCSSEEE-ECC----BSSCCCE
T ss_pred ---------ceEEEecCCCEEEe-CCCCcEEEEcc----------------------cCCceEEE-EeC----CCCccCc
Confidence 23345677775544 33455555421 11111111 122 2334579
Q ss_pred EeecCCCEEEEEe--CCeEEEEECCCccEE--------EEEeCC---CCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 848 ALSKNDSYVMSAS--GGKVSLFNMMTFKVM--------TMFMSP---PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 848 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~--------~~~~~h---~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
+++|||+++++++ +++|.|||+++.... ..+.++ .-.....+|++ +|..+.+.+.|.+|..|++..
T Consensus 264 ~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~ 342 (441)
T d1qnia2 264 NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIAD 342 (441)
T ss_dssp EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHH
T ss_pred eECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccch
Confidence 9999999988776 899999998753210 111111 11245568999 888888999999999999752
Q ss_pred c----------eeeEEe-----cCcCCCeEEEEEcCCCCeEEEEc
Q 001159 915 D----------EVKTKL-----KGHQNRITGLAFSPTLNALVSSG 944 (1135)
Q Consensus 915 ~----------~~~~~l-----~~h~~~i~~l~~s~d~~~l~s~~ 944 (1135)
. ..+..+ .||...+.+.+++|||++|++++
T Consensus 343 ~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 343 AIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp HHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred hhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 1 233333 57888888889999999999994
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.57 E-value=1.4e-13 Score=158.16 Aligned_cols=218 Identities=11% Similarity=0.083 Sum_probs=139.1
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC--
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-- 428 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~-- 428 (1135)
.+.|.++++ ++. ..++.|.+||+.+++.... +....+..|...|.++.|||||++||+++.
T Consensus 21 ~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHE-YLY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSE-EEE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 577999997 555 3478999999999876421 122235678889999999999999999854
Q ss_pred -------CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC-----
Q 001159 429 -------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH----- 496 (1135)
Q Consensus 429 -------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h----- 496 (1135)
++.+.+||+.+++.. .+..|...+..+.|||||+ .||.. .++.+++|+..+++..+....+
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 567899999987532 4667899999999999999 56665 4778999999888766543322
Q ss_pred -------------CCCeeEEEeeccCCccEEEEEEcCCe-EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 497 -------------EAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 497 -------------~~~v~~i~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
.+....+.|+|++ +.|+....|.+ +..|.+...... .........+.+...+..
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~wSPDG--k~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------- 224 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------- 224 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred cccccceeeeeeecCCccccEECCCC--CccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence 2334557788754 88888876644 554443211100 001112222222222211
Q ss_pred CCCCCeEEEEECCCCeEEEEeec----------ccCCceeEEEecCCCCEEEE
Q 001159 563 KEGESHLVEWNESEGAIKRTYSG----------FRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~----------~~~~~v~~i~~s~~~~~l~~ 605 (1135)
.....+.+|++..+........ ..+..+..+.|.+++..++.
T Consensus 225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 1244578888876654322211 11123567888888876555
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=1e-13 Score=153.60 Aligned_cols=287 Identities=10% Similarity=-0.001 Sum_probs=190.0
Q ss_pred CCCeeEEEEecCCCeEEEE--Eeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 346 GSNVMSMDFHPQQQTILLV--GTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~--g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
.+....++.+++++...++ ...+| .|.+||..+++.+.. ..++... .++|+|||+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg~ 77 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSGS 77 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTSS
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCCC
Confidence 3456666778888753333 33444 577779888876653 2233333 589999999
Q ss_pred eEEEEe----------CCCeEEEEEeCCCCceeeeeEeeccc-------CCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 422 MLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHV-------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 422 ~las~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~-------~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.|++++ .|+.|.+||..+++.... +..+. .....++|+|||++ ++++...++.+.+||+
T Consensus 78 ~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSV 153 (368)
T ss_dssp CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEE
T ss_pred EEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEEC
Confidence 999865 367899999999876553 32221 12346899999995 3344456899999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe------cCCCCcEEEEEEcCCCCEEEE
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY------DAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
.+++.+..+..+..... .+.+. ..++..+.||.+.+|++......... ..+...+....+.+++..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 154 PGASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp TTTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred CCCcEeEEeeccCcceE----ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 99999988876554322 22222 56778889999999988766554332 222334556778888776665
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEee--cccC---------CceeEEEecCCCCEEEEEeCC---------CeEEEEECC
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYS--GFRK---------RSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMD 618 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~--~~~~---------~~v~~i~~s~~~~~l~~~~~d---------g~i~iwd~~ 618 (1135)
. .+.+++++...+....... .... .....+++++++..++....+ ..|.+||..
T Consensus 229 ~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~ 302 (368)
T d1mdah_ 229 V------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp B------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred c------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence 4 3446667766554432221 1110 012347889998887765322 359999999
Q ss_pred CCceEEEEeCCCCCCCcceEEEcCCCCE--EEEEECCCcEEEEEcCCCchhhhhcc
Q 001159 619 NMNMLTTVDADGGLPASPRLRFNKEGSL--LAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~ 672 (1135)
+++.+..+.... .+..++|+|||+. ++++..++.|++||..++ +.++.+.
T Consensus 303 t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 303 VGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp SCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 999888776432 5789999999973 456667899999999999 4444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=3.2e-13 Score=149.53 Aligned_cols=290 Identities=7% Similarity=-0.057 Sum_probs=180.6
Q ss_pred EEEEEcCCCCEEE-EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----------CCCeEE
Q 001159 545 TMMAYSADGTRLF-SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIK 613 (1135)
Q Consensus 545 ~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~ 613 (1135)
..++..++++... +.....++...+++||..+++.+..+.++.. ..++|+|||+.+++.+ .|+.|+
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~ 99 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL---SLAVAGHSGSDFALASTSFARSAKGKRTDYVE 99 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT---CEEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC---CcceECCCCCEEEEEcccCccccccccCCeEE
Confidence 3445667887643 2222344567799999999999998887654 3588999999988764 367899
Q ss_pred EEECCCCceEEEEeCCCCC-----CCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhccccccccccCCCCCCC
Q 001159 614 FWDMDNMNMLTTVDADGGL-----PASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
+||..+++++..+..+... .....++|+|||++|+++. .++.+.+||+.++ +....+..+...
T Consensus 100 v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~-~~~~~~~~~~~~---------- 168 (368)
T d1mdah_ 100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA-SDDQLTKSASCF---------- 168 (368)
T ss_dssp EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT-EEEEEEECSSCC----------
T ss_pred EEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cEeEEeeccCcc----------
Confidence 9999999999888654321 1245799999999998876 5799999999887 333322211000
Q ss_pred CCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecC
Q 001159 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~ 767 (1135)
...
T Consensus 169 -------------------------------------------~~~---------------------------------- 171 (368)
T d1mdah_ 169 -------------------------------------------HIH---------------------------------- 171 (368)
T ss_dssp -------------------------------------------CCE----------------------------------
T ss_pred -------------------------------------------eEc----------------------------------
Confidence 000
Q ss_pred CcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 768 DSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
+.... .-+++++||+.++....++....|.... . .... + ...+..+
T Consensus 172 ---~~~~~-~~v~~~~Dg~~~~~~~~~~~~~~~~~~~---------------------~------~~~~--~-~~~~~~~ 217 (368)
T d1mdah_ 172 ---PGAAA-THYLGSCPASLAASDLAAAPAAAGIVGA---------------------Q------CTGA--Q-NCSSQAA 217 (368)
T ss_dssp ---EEETT-EEECCCCTTSCEEEECCSSCCCCEECCC---------------------C------SCTT--S-CBCSCCE
T ss_pred ---cCCCc-eEEEEcCCCCEEEEEecCCceeeeeeec---------------------c------cccc--c-ccceeec
Confidence 00111 3344555555444433333322221100 0 0000 1 3333455
Q ss_pred EeecCCCEEEEEeCCeEEEEECCCccEEEEE--eCCC----------CCeEEEEEecCCCcEEEEEeCC---------Cc
Q 001159 848 ALSKNDSYVMSASGGKVSLFNMMTFKVMTMF--MSPP----------PAATFLAFHPQDNNIIAIGMED---------SS 906 (1135)
Q Consensus 848 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~--~~h~----------~~v~~l~~sp~~~~~lasg~~d---------g~ 906 (1135)
.+.+++..+... ++.+.+++.......... ..+. .....++++| ++..++....+ ..
T Consensus 218 ~~~~~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~ 295 (368)
T d1mdah_ 218 QANYPGMLVWAV-ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp EETTTTEEEECB-SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEE
T ss_pred ccccCcEEEEec-CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCce
Confidence 666666554432 455666666554433221 1111 1234588999 56655554322 35
Q ss_pred EEEEEcccceeeEEecCcCCCeEEEEEcCCCCe--EEEEcCCCcEEEEeCCCCceece
Q 001159 907 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA--LVSSGADAQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~--l~s~~~D~~i~iwd~~~~~~~~~ 962 (1135)
|.+||..+++.+..+. +...+.+++|||||+. +++.+.|++|.+||..+++.+..
T Consensus 296 v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp EEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred EEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 9999999999888876 4467899999999973 56777899999999999986543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.52 E-value=8.5e-13 Score=151.57 Aligned_cols=140 Identities=9% Similarity=0.047 Sum_probs=105.6
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee-----cCCCCCeeEEEeeccCCccEEEEEEc---------CCeE
Q 001159 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAI---------DGKI 523 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~~~l~s~s~---------dg~i 523 (1135)
.+.|.++++ ++.. .|+.+.+||+.+++....+ ..|...|.++.|+|++ ++|+.++. ++.+
T Consensus 21 ~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg--~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--QFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS--SEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC--CEEEEEECCcceeeeccCceE
Confidence 578999987 5543 4788999999999876544 4456789999999855 88887753 5778
Q ss_pred EEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC---------------
Q 001159 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--------------- 588 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--------------- 588 (1135)
.+||+.+++ ...+..+...+..+.|||||+.++... ++.+++|+..++...+.......
T Consensus 95 ~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~ 168 (470)
T d2bgra1 95 DIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (470)
T ss_dssp EEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEECCCCc-ccccccCCccccccccccCcceeeEee-----cccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence 999999765 455777788899999999999999875 66799999998887655433221
Q ss_pred --CceeEEEecCCCCEEEEEeCC
Q 001159 589 --RSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 589 --~~v~~i~~s~~~~~l~~~~~d 609 (1135)
.....+.|+|||++|+....|
T Consensus 169 ~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 169 VFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEE
T ss_pred ecCCccccEECCCCCccceeEec
Confidence 123456788888888876543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.45 E-value=6.5e-14 Score=152.40 Aligned_cols=231 Identities=7% Similarity=-0.067 Sum_probs=156.3
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEee---------------------------cccCCEEEEEEecCCCeEEEEEEcC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEID---------------------------AHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~---------------------------~h~~~v~~v~~s~d~~~~~l~s~~~ 475 (1135)
+++++.+|+|.+|++.+++.++.+..+. .|........++|||++ ++++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~-lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY-LFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE-EEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE-EEEEcCC
Confidence 5667789999999999887665432221 13334555667899996 5577778
Q ss_pred CCcEEEEEcCCCeeeeeec-CCCCCeeEEEeeccCCccEEEEEEcCC-----------------eEEEEeCcCCCceeEe
Q 001159 476 DKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDG-----------------KIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg-----------------~i~iwd~~~~~~~~~~ 537 (1135)
+..|.++|+.+++....+. .+...+..++|+|++.-.+++..+.+. .+..+|..+.+....+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 9999999999999887664 356788999999877544666555442 2455777776666555
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
... .....+.++|+|+++++.+.+. ..+..++..+......+.... .-..+.++++|+++..+ .++.+.+++.
T Consensus 173 ~v~-~~p~~v~~spdGk~a~vt~~ns---e~~~~id~~t~~~~d~i~v~n--~p~~~~~~~dGk~~~v~-~~~v~vvd~~ 245 (441)
T d1qnia2 173 IVD-GNLDNTDADYTGKYATSTCYNS---ERAVDLAGTMRNDRDWVVVFN--VERIAAAVKAGNFKTIG-DSKVPVVDGR 245 (441)
T ss_dssp EES-SCCCCEEECSSSSEEEEEESCT---TCCSSHHHHTCSSBCEEEEEE--HHHHHHHHHTTCCBCCT-TCCCCEEECS
T ss_pred ecC-CCccceEECCCCCEEEEEecCC---CceEEEeccCcceEEEEEeCC--ccceEEEecCCCEEEeC-CCCcEEEEcc
Confidence 433 3467889999999999876421 223333433333322222111 11224567889877654 4678888888
Q ss_pred CCCceEEEEeCCCCCCCcceEEEcCCCCEEEE-EECCCcEEEEEcCCC
Q 001159 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKILANSDG 664 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~ 664 (1135)
...+.+..+..... ...+.++|||+++++ +..+++|.+||+.+.
T Consensus 246 ~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 246 GESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp SSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred cCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 87778888765433 578999999998765 566999999998743
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.20 E-value=1.9e-09 Score=117.50 Aligned_cols=255 Identities=13% Similarity=0.066 Sum_probs=150.2
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCc-cEEEEE-eCCCCCeEEEEEecCCCcE--EEEEe-CCCcEEEEEcccc
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTF-KVMTMF-MSPPPAATFLAFHPQDNNI--IAIGM-EDSSVQIYNVRVD 915 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~-~~~~~~-~~h~~~v~~l~~sp~~~~~--lasg~-~dg~v~iwd~~~~ 915 (1135)
...+.-|+|+|++++|.++..+.+..|.+... ...... .........+++++ +++. ++++. ..++|..+.+...
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCC
Confidence 45567799999999999888788888876542 222221 12234456788888 6663 33322 2455655543211
Q ss_pred -------------ee---eE-EecCcCCCeEEEEEcCCCCeEEEEcC-CCcEEEEeCCCCceece-eeeecCCCCCCCCC
Q 001159 916 -------------EV---KT-KLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKS-RFIQAPAGRQSPLV 976 (1135)
Q Consensus 916 -------------~~---~~-~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 976 (1135)
+. .. .-......+.+++|+|||+++++++. ...|.+|+......+.. ........ ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g~ 193 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----GD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----TC
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----CC
Confidence 00 00 01122234789999999998887763 44688887654332221 11111111 14
Q ss_pred CceEEEECCCCcEEEEE--ecCeEEEEecCCc-e--eec------cCC--------CCCCCCCEEEEEEeeCCCEEEEEe
Q 001159 977 GETKVQFHNDQTHLLVV--HESQISVYDSKLE-C--SRS------WSP--------KDALPAPISSAIYSCDGLLVYAGF 1037 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~-~--~~~------~~~--------~~~h~~~i~~~~~s~d~~~l~~~~ 1037 (1135)
....++|+||++++.+. .+++|.+|+++.. . +.. ... ...+......+.++|||++|+++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 67899999999999885 4789999998222 1 111 100 011122356789999999998774
Q ss_pred C------CCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEE-ecCCcEEEEecCCCc
Q 001159 1038 C------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG-MSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1038 ~------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~v~~W~~~~~~ 1104 (1135)
. .+.|..|++.....+.+.... .........+.+++++|.+|++|+.+ ..++.|.+|++....
T Consensus 274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~----~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 274 RANKFELQGYIAGFKLRDCGSIEKQLFL----SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEE----EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ccCCCccceEEEEEEecCCCceeeEeEe----eEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 3 234778887654322221100 01112224566788888777866655 567899999986554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.14 E-value=2e-08 Score=109.10 Aligned_cols=160 Identities=8% Similarity=0.101 Sum_probs=101.5
Q ss_pred EEEEEecCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
.+++|+|||+++++... ...|.+|++... +... .......... ....+.++|+||+++
T Consensus 148 h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~-----g~~~---------------~~~~~~~~~~-g~gPr~i~f~pdg~~ 206 (365)
T d1jofa_ 148 HGMVFDPTETYLYSADLTANKLWTHRKLAS-----GEVE---------------LVGSVDAPDP-GDHPRWVAMHPTGNY 206 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTT-----SCEE---------------EEEEEECSST-TCCEEEEEECTTSSE
T ss_pred eEEEECCCCCEEEEeeCCCCEEEEEEccCC-----Ccee---------------eccceeecCC-CCceEEEEECCCCce
Confidence 78999999998888764 456777764321 1100 0000000012 567889999999999
Q ss_pred EEEEe--CCeEEEEECCCccEEE--E---Ee--------------CCCCCeEEEEEecCCCcEEEEEeC-C-----CcEE
Q 001159 856 VMSAS--GGKVSLFNMMTFKVMT--M---FM--------------SPPPAATFLAFHPQDNNIIAIGME-D-----SSVQ 908 (1135)
Q Consensus 856 la~~~--dg~i~vwd~~~~~~~~--~---~~--------------~h~~~v~~l~~sp~~~~~lasg~~-d-----g~v~ 908 (1135)
+.+.. +++|.+|++...+... . .. .+......+.++| +|++|+++.. + +.|.
T Consensus 207 ~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~ 285 (365)
T d1jofa_ 207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIA 285 (365)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEE
T ss_pred EEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEE
Confidence 87776 7899999997654321 1 11 0112356789999 8888877643 2 2377
Q ss_pred EEEcccceeeE------EecCcCCCeEEEEEcC-CCCeEEEEc-CCCcEEEEeCCCCc
Q 001159 909 IYNVRVDEVKT------KLKGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWE 958 (1135)
Q Consensus 909 iwd~~~~~~~~------~l~~h~~~i~~l~~s~-d~~~l~s~~-~D~~i~iwd~~~~~ 958 (1135)
.|++.....+. ..........+++++| +|++|+.+. .++.|.+|+++...
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 286 GFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 77765432221 1122344567899998 899877664 67899999886543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.13 E-value=2e-08 Score=106.28 Aligned_cols=245 Identities=9% Similarity=0.036 Sum_probs=164.0
Q ss_pred CCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceE
Q 001159 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 333 d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
+..+.+.+.++.....+..++++|||+ |+++...+++|..|+....... +......+.
T Consensus 14 ~~~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~ 71 (302)
T d2p4oa1 14 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVS 71 (302)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEE
T ss_pred cCCcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcc
Confidence 445566777777666799999999998 8888888999988886543221 223556799
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+++|+|||+++++...++.+..|+............-.........+++.+++. ++++.+.++.+..+|...+.....
T Consensus 72 gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~ 149 (302)
T d2p4oa1 72 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 149 (302)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeE
Confidence 999999999999998888888888765433221111223445688999999998 788888899999999877653322
Q ss_pred ec----------CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE--ecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 493 FE----------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 493 ~~----------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
+. ........+.+. ++ .++++.+..+.|..+++........ ..........++++++|++.++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~ngi~~~--~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~ 226 (302)
T d2p4oa1 150 LEHPMLARSNSESVFPAANGLKRF--GN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH 226 (302)
T ss_dssp EECGGGSCSSTTCCSCSEEEEEEE--TT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred ecCCccceeeccCccccccccccc--CC-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc
Confidence 11 112234555553 22 5667777888898888776543321 111233455799999998766654
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeeccc-CCceeEEEe---cCCCCEEEEEeCC
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQF---DTTRNRFLAAGDE 609 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~i~~---s~~~~~l~~~~~d 609 (1135)
. ++.|..++.. ++......... -...++++| ++|++.|+.++..
T Consensus 227 ~----~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 227 I----YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp T----TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C----CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 2 6678888875 44333332221 125788999 6778888776543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2.2e-08 Score=104.08 Aligned_cols=224 Identities=9% Similarity=0.077 Sum_probs=136.8
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCC---eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKH---IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg---~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+...+.+.+|||||+.||...... .+.+.+..++... .+..+.+......|+|+|+.+ +.....++...+
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~ 109 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNL 109 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCccce
Confidence 34566788999999999999875543 4666666665432 345678889999999999963 333333433333
Q ss_pred EEcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEE--eCcCCCceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 482 WDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
+.... ..................+++... ..+++...+|...+| ++.... ...............|+|+++.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~ 187 (269)
T d2hqsa1 110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVM 187 (269)
T ss_dssp EEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEE
T ss_pred eecccccccceeeeeccccccccccccccc-cceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEE
Confidence 33222 222222223344444445555443 455555556654444 444432 2334445567778899999999997
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
.... .+...+.+.+...+... .+. ... ......|+|||+.|+..+. ...|++++++.+.... +.... ..+
T Consensus 188 ~~~~-~~~~~i~~~~~~~~~~~-~~~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~ 260 (269)
T d2hqsa1 188 VSSN-GGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQV 260 (269)
T ss_dssp EEEC-SSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEE
T ss_pred Eeec-CCceeeeEeecccccce-Eee-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcE
Confidence 7642 23456777776665542 222 222 4567889999999886543 3578999998766543 43332 256
Q ss_pred ceEEEcC
Q 001159 636 PRLRFNK 642 (1135)
Q Consensus 636 ~~~~~~~ 642 (1135)
...+|+|
T Consensus 261 ~~p~WSP 267 (269)
T d2hqsa1 261 KFPAWSP 267 (269)
T ss_dssp EEEEECC
T ss_pred EeEEeCC
Confidence 7788888
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.2e-08 Score=104.08 Aligned_cols=241 Identities=10% Similarity=0.048 Sum_probs=152.6
Q ss_pred cccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
+|..|....+....+.+...+...+|||||++|+++....+ .+.+.+..++.... +..
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 80 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 80 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EEC
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eee
Confidence 55555555555555667778999999999998776665544 45555655554321 345
Q ss_pred CCcceEEEEEcCCCCeEEEEeC-CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--EEEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWD 483 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~--i~iwd 483 (1135)
+...+....|||+|+.++.... ++...++......... .....+........+++++.. .+++...++. |.+.+
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEE
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeee
Confidence 7788899999999999988654 3333333333222111 122334555667788888885 4555555554 55555
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEE-EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
+..+.. ..+..+........|+|++ ..++.. ...+...+|..+...................|||||+.|+..+..
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 158 INGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp TTSSCC-EECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred cccccc-eeeeccccccccccccccc--ceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC
Confidence 555433 3444456667777888765 555554 455566666555555445555566667788999999999866532
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.+...|+++++..+.. ..+..... .+...+|+|
T Consensus 235 -~~~~~l~~~~~dg~~~-~~lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 235 -GMGSVLNLVSTDGRFK-ARLPATDG-QVKFPAWSP 267 (269)
T ss_dssp -TTEEEEEEEETTSCCE-EECCCSSS-EEEEEEECC
T ss_pred -CCCcEEEEEECCCCCE-EEEeCCCC-cEEeEEeCC
Confidence 3466899999986665 44554444 677888988
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=9.7e-08 Score=99.40 Aligned_cols=241 Identities=11% Similarity=0.119 Sum_probs=165.4
Q ss_pred ceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC------CCCeEEEEEecCCCcEEEEE-eCCCcEEEEEccc
Q 001159 843 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRV 914 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~ 914 (1135)
....++++++|+.+++-. +..|++||.+ ++.+..+... ...-..+++.++.+.++++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 467999999999776654 6889999965 6777766321 11345677766445555443 345577777754
Q ss_pred ceeeEEec-CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-
Q 001159 915 DEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 992 (1135)
Q Consensus 915 ~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 992 (1135)
++....+. .......++++.++|.++++....+.+.+++... +.+.. ... ..+ ......+++.++|..+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~--~g~-~~~---~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK--FGC-SKH---LEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE--EEC-TTT---CSSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeec--ccc-ccc---ccccceeeeccceeEEeee
Confidence 55555553 3456688999999999998888888888888654 22221 111 111 145678999999988777
Q ss_pred EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEECCCceeeeeeCCceeccccccCCCC
Q 001159 993 VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA 1071 (1135)
Q Consensus 993 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
...+.|++||.+++.+..+.. .++......++++++|+++++-.. ++.|.+|+. +|+++..+.... ...
T Consensus 175 ~~~~~V~~~d~~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~--------~~~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV--------KHA 244 (279)
T ss_dssp GGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS--------CCS
T ss_pred ccccceeeeecCCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCC--------CCC
Confidence 467899999998887776642 233556789999999997776543 457999985 588877664221 113
Q ss_pred ccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1072 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1072 ~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.+..++..| ||.++ .++.++.|++|+.....
T Consensus 245 ~p~~vav~~-dG~l~-V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 245 QCFDVALMD-DGSVV-LASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CEEEEEEET-TTEEE-EEETTTEEEEEECSCCC
T ss_pred CEeEEEEeC-CCcEE-EEeCCCeEEEEEeeeec
Confidence 466777788 66554 45689999999987653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.3e-08 Score=110.88 Aligned_cols=351 Identities=10% Similarity=0.058 Sum_probs=193.7
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc--CCceeEEEecCCCCEEEEEe---------CCCeEEEEE
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAG---------DEFQIKFWD 616 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~~~~---------~dg~i~iwd 616 (1135)
.|.+++.+++. +.++.|.+||+.+++....+.... ...+....||||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 57788876653 236779999999887644444322 22466788999999988764 356789999
Q ss_pred CCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcc-ccccccccCCCCCCCCCCccccc
Q 001159 617 MDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINA 695 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 695 (1135)
+.+++.............+....|||||+.||... ++.|.+.+..++.. .+... +....
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~-~~lt~~g~~~~------------------ 157 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA-IRVVSTGKEGV------------------ 157 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC-EEEECCCBTTT------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce-EEEecccCcce------------------
Confidence 99887654433333333566789999999999876 45788877765521 11111 10000
Q ss_pred CCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccce
Q 001159 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1135)
Q Consensus 696 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1135)
+..+ +.-|-... . -...-
T Consensus 158 -------------------------------------------i~nG----~~d~vyee-----e----------~~~~~ 175 (465)
T d1xfda1 158 -------------------------------------------IYNG----LSDWLYEE-----E----------ILKTH 175 (465)
T ss_dssp -------------------------------------------EEEE----ECCHHHHH-----T----------TSSSS
T ss_pred -------------------------------------------eecc----ccchhhhh-----h----------hcccc
Confidence 0000 00010000 0 00001
Q ss_pred EEEEEEecCCcceeEecc-cceeeeEEeccccC--C---------CCCcccccccCeeecCCCCcceeccCCCC---CCC
Q 001159 776 VVRLIYTNSGLSLLALAS-NAVHKLWKWQRTER--N---------PSGKATANVAPQLWQPPSGTLMTNDINES---KPT 840 (1135)
Q Consensus 776 ~~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~ 840 (1135)
..+.|||||++|+.... +..+..+.+..... . ..|.......+.+++..++.......... ..
T Consensus 176 -~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~- 253 (465)
T d1xfda1 176 -IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR- 253 (465)
T ss_dssp -EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS-
T ss_pred -ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc-
Confidence 67788999998887764 45566666543211 1 11111112234566766554322222110 01
Q ss_pred CCceEEEEeecCCCEEEEEeC-----CeEEEEECCCccEEEEEeCCCC-C----eEEEEEecCCCcEEEE--Ee-CCC--
Q 001159 841 EESAACIALSKNDSYVMSASG-----GKVSLFNMMTFKVMTMFMSPPP-A----ATFLAFHPQDNNIIAI--GM-EDS-- 905 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~d-----g~i~vwd~~~~~~~~~~~~h~~-~----v~~l~~sp~~~~~las--g~-~dg-- 905 (1135)
...+..+.|++|+++++...+ ..|.++|..++++...+..... - -....|+| +|+.++. .+ .+|
T Consensus 254 ~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~ 332 (465)
T d1xfda1 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRG 332 (465)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSS
T ss_pred cceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccC
Confidence 335778999999987776642 2488999999987666543221 1 23467899 5653322 22 233
Q ss_pred cEEEEEcc------cceeeEEecCcCCCeEEE-EEcCCCCeEE-EEcCCC--cEEEEeC--CCCceeceeeeecCCCCCC
Q 001159 906 SVQIYNVR------VDEVKTKLKGHQNRITGL-AFSPTLNALV-SSGADA--QLCMWSI--DKWEKLKSRFIQAPAGRQS 973 (1135)
Q Consensus 906 ~v~iwd~~------~~~~~~~l~~h~~~i~~l-~~s~d~~~l~-s~~~D~--~i~iwd~--~~~~~~~~~~~~~~~~~~~ 973 (1135)
.++..++. .++.+..+....-.|..+ +|+.+++.+. ++..++ .-.+|.+ ..+.. ..++.......
T Consensus 333 ~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~- 409 (465)
T d1xfda1 333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN- 409 (465)
T ss_dssp CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS-
T ss_pred ceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC-
Confidence 34444332 233344555444456665 6888877654 444332 2334444 33221 11221111111
Q ss_pred CCCCceEEEECCCCcEEEEE
Q 001159 974 PLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 974 ~~~~v~~~~~s~dg~~l~~~ 993 (1135)
.....+.|||++++++..
T Consensus 410 --~~~~~~~~S~~~~y~v~~ 427 (465)
T d1xfda1 410 --CTYFSASFSHSMDFFLLK 427 (465)
T ss_dssp --CCCCEEEECTTSSEEEEE
T ss_pred --CCEEEEEECCCCCEEEEE
Confidence 345789999999999874
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.99 E-value=8.8e-08 Score=98.52 Aligned_cols=237 Identities=10% Similarity=0.057 Sum_probs=154.8
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 918 (1135)
......++++++|+..++.. .+.+..++............-......+++++ +++++++....+.+++++-.+...+
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEE
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceee
Confidence 45678999999999766654 47777776654433222222223467899999 7888877777777777765555444
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCe
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ 997 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 997 (1135)
....+ .....++++.++++++++-..+..+..++....... .....+. .....++++++|+.+++ ..++.
T Consensus 92 ~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~~ 162 (260)
T d1rwia_ 92 LPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTGL----NDPDGVAVDNSGNVYVTDTDNNR 162 (260)
T ss_dssp CCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCSC----CSCCEEEECTTCCEEEEEGGGTE
T ss_pred eeeee-eeecccccccccceeEeeccccccccccccccceee----eeeeccc----CCcceeeecCCCCEeeecccccc
Confidence 33332 345789999999998888777777888877654321 1111111 34578999999997777 46788
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEE
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1077 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1135)
|..++.++.....+.... ......++++++|+++++....+.|..++....... .+.. ..-..|..++
T Consensus 163 i~~~d~~~~~~~~~~~~~--~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~~---------~~~~~P~~i~ 230 (260)
T d1rwia_ 163 VVKLEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF---------TGLNTPLAVA 230 (260)
T ss_dssp EEEECTTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECCC---------CSCCCEEEEE
T ss_pred ccccccccceeeeeeccc--cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEcc---------CCCCCeEEEE
Confidence 999998555444433221 455689999999998888888888998887654322 1111 1114567888
Q ss_pred ecCCCCCEEEEEecCCcEEEEec
Q 001159 1078 PHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1078 ~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
+++ +|+++++-..+++|+..+.
T Consensus 231 ~d~-~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 231 VDS-DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp ECT-TCCEEEEEGGGTEEEEECC
T ss_pred EeC-CCCEEEEECCCCEEEEEeC
Confidence 988 6788888677676654443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.1e-07 Score=102.73 Aligned_cols=342 Identities=10% Similarity=0.046 Sum_probs=185.8
Q ss_pred CCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCC
Q 001159 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 809 (1135)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 809 (1135)
..+.+++.++....++.+.+|++.+.... .+..........+ ....+||||++++....- .++|...
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~----~l~~~~~~~~~~~-~~~~~SpD~~~vl~~~~~--~~~~r~s------ 88 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTST----VLIEGKKIESLRA-IRYEISPDREYALFSYNV--EPIYQHS------ 88 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCE----EEECTTTTTTTTC-SEEEECTTSSEEEEEESC--CCCSSSC------
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEE----EEEcCcccccccc-ceeEECCCCCeEEEEEcc--cceeEee------
Confidence 34566667766667788999998764331 1111222233355 778899999988776431 1222110
Q ss_pred CCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeC-CCCC----
Q 001159 810 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-PPPA---- 884 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-h~~~---- 884 (1135)
.....-++|+.++......... .. ...+....|||||+.||...++.|.+.+..++..++.... ..+.
T Consensus 89 -----~~~~~~i~d~~~~~~~~l~~~~-~~-~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG 161 (465)
T d1xfda1 89 -----YTGYYVLSKIPHGDPQSLDPPE-VS-NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNG 161 (465)
T ss_dssp -----CCSEEEEEESSSCCCEECCCTT-CC-SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred -----ccccEEEEEccCCceeeccCcc-CC-ccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeecc
Confidence 0011223455555433221111 11 4456668899999999999999999999887766554432 1111
Q ss_pred -------------eEEEEEecCCCcEEEEEeC-CCc---------------------------------EEEEEccccee
Q 001159 885 -------------ATFLAFHPQDNNIIAIGME-DSS---------------------------------VQIYNVRVDEV 917 (1135)
Q Consensus 885 -------------v~~l~~sp~~~~~lasg~~-dg~---------------------------------v~iwd~~~~~~ 917 (1135)
-.++-||| ||+.||.... +.. +.++|+.++..
T Consensus 162 ~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~ 240 (465)
T d1xfda1 162 LSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (465)
T ss_dssp ECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred ccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcE
Confidence 25788999 8888888652 232 34444443322
Q ss_pred eEEe------cCcCCCeEEEEEcCCCCeEEEEc-CC---CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 918 KTKL------KGHQNRITGLAFSPTLNALVSSG-AD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 918 ~~~l------~~h~~~i~~l~~s~d~~~l~s~~-~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
.... .....-+..+.|++|+++++... .+ ..|.++|..+++...... ....+-.. .......|++||
T Consensus 241 ~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~-e~~~~wv~--~~~~~p~~~~dg 317 (465)
T d1xfda1 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-DESEAWLH--RQNEEPVFSKDG 317 (465)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-EECSSCCC--CCCCCCEECTTS
T ss_pred EEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE-EcCCceEe--ccCCceeEccCC
Confidence 1111 11122367889999998766543 22 258888999887543221 11111110 112456899999
Q ss_pred cEEEE---E-ec--CeEEEEec-------CCceeeccCCCCCCCCCEEEE-EEeeCCCEEE-EEeCCC----eEEEEECC
Q 001159 988 THLLV---V-HE--SQISVYDS-------KLECSRSWSPKDALPAPISSA-IYSCDGLLVY-AGFCDG----AIGVFDAE 1048 (1135)
Q Consensus 988 ~~l~~---~-~d--~~v~vwd~-------~~~~~~~~~~~~~h~~~i~~~-~~s~d~~~l~-~~~~dg----~I~vwd~~ 1048 (1135)
+.++. . .+ +.+..+++ .+..+..+... .-.|..+ +|+++++.+. ++..++ .++--++.
T Consensus 318 ~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G---~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~ 394 (465)
T d1xfda1 318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (465)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC---CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECC
Confidence 85432 2 22 34444432 23333333322 4566665 6888887654 454432 24444444
Q ss_pred CceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC---CcEEEEecCCCccc
Q 001159 1049 TLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD---GAVHVVEPSDAELK 1106 (1135)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g~v~~W~~~~~~~~ 1106 (1135)
.+.....+.... ........+.|+| ++++++..... -.+.+++..+++..
T Consensus 395 g~~~~~~lt~~~-------~~~~~~~~~~~S~-~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 395 GNFNRQCLSCDL-------VENCTYFSASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp TTCCCBCSSTTS-------SSSCCCCEEEECT-TSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred CCCcceeecccc-------CCCCCEEEEEECC-CCCEEEEEeecCCCCeEEEEECCCCCEE
Confidence 433322222111 1111233788999 67777743333 46788887777643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.95 E-value=6.1e-08 Score=102.39 Aligned_cols=236 Identities=9% Similarity=0.020 Sum_probs=149.3
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee-e
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-K 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~ 918 (1135)
...+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +|+++++...++.+..|+...... .
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccce
Confidence 34578899999999988877 79999998654 3 334444667899999999 889999888888898888764321 1
Q ss_pred EEe--cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeee--cCCCCCCCCCCceEEEECCCCcEEEE--
Q 001159 919 TKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ--APAGRQSPLVGETKVQFHNDQTHLLV-- 992 (1135)
Q Consensus 919 ~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~~-- 992 (1135)
..+ .........+++.++++++++.+.++.+..++...+.......-. ..............+.++. ..+..
T Consensus 104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~ 181 (302)
T d2p4oa1 104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSN 181 (302)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEE
T ss_pred eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--Cceeeec
Confidence 122 234456889999999999999999998888888876532111100 0011111112344555554 44444
Q ss_pred EecCeEEEEecCCc-eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCC
Q 001159 993 VHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA 1071 (1135)
Q Consensus 993 ~~d~~v~vwd~~~~-~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
+..+.|..++.... ....... .........++|++||+++++...++.|..++.+.. ........ ....
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~~--------~~~~ 251 (302)
T d2p4oa1 182 TEKMLLLRIPVDSTDKPGEPEI-FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQAE--------QGVI 251 (302)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEE-EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECGG--------GTCT
T ss_pred CCCCeEEecccccccccccccc-ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEecC--------CCCC
Confidence 46788888887222 1111100 001234567999999998888888999999987643 22221111 1114
Q ss_pred ccEEEEecC--CCCCEEEEEec
Q 001159 1072 HPLVIAPHP--SEPNQIALGMS 1091 (1135)
Q Consensus 1072 ~~~~~~~~~--~~~~~l~sg~~ 1091 (1135)
.+.+++|.+ .|++.|..++.
T Consensus 252 ~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 252 GSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp TEEEEEECCSTTTTTEEEEEEC
T ss_pred CceEEEEcCCCCCCCEEEEECC
Confidence 567889942 26666655443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=3.8e-07 Score=94.74 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=162.7
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCC-CE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-SY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg-~~ 855 (1135)
..++++++|+.+++-..+..|++|+.. +..... +. ..+ ..... ......+++..+. .+
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~-----~~-~~~-------~~~~~-~~~p~~~~~~~~~~~~ 84 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQ-----FG-ECG-------KRDSQ-LLYPNRVAVVRNSGDI 84 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEE-----EC-CBS-------SSTTC-BSSEEEEEEETTTTEE
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEE-----ec-ccC-------CCccc-cccccccccccccccc
Confidence 899999999977766667888888632 211111 00 000 00001 2334556666654 44
Q ss_pred EEEEe--CCeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe--cCcCCCeEE
Q 001159 856 VMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNRITG 930 (1135)
Q Consensus 856 la~~~--dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~i~~ 930 (1135)
+++.. ++.|.+++. .++....+.. .......+++.+ ++.++++....+.+.+++.. ++.+..+ ..+......
T Consensus 85 ~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~ 161 (279)
T d1q7fa_ 85 IVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNG 161 (279)
T ss_dssp EEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEE
T ss_pred ceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccce
Confidence 44443 467888886 4666666643 445678999998 78888877777888888854 5556654 345667889
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-E-ecCeEEEEecCCcee
Q 001159 931 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V-HESQISVYDSKLECS 1008 (1135)
Q Consensus 931 l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~-~d~~v~vwd~~~~~~ 1008 (1135)
+++.+++..+++....+.|.+||..... +.. + ...+.. .....+++.++|+.+++ . .+..|.+|+.+++.+
T Consensus 162 i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~~~--~-g~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~ 234 (279)
T d1q7fa_ 162 VVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQ--I-GGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI 234 (279)
T ss_dssp EEECSSSEEEEEEGGGTEEEEEETTCCE-EEE--E-SCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred eeeccceeEEeeeccccceeeeecCCce-eee--e-cccccc---cCCcccccccCCeEEEEECCCCcEEEEECCCCCEE
Confidence 9999999999999999999999976532 211 1 112222 45678999999998877 3 345799999988877
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
..+.... .......+++.+||.+++ ++.+++|++|......
T Consensus 235 ~~~~~~~-~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 235 SALESKV-KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEEEESS-CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred EEEeCCC-CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence 6654321 134678999999998655 5679999999987654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=2e-07 Score=95.76 Aligned_cols=241 Identities=8% Similarity=-0.051 Sum_probs=149.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.-....++++++|..+++..+..+.|..++......... ..+-......++++++|++++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence 3346789999999985444445567777777654432210 011123356789999999877
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+....+.+++++-.+...+. .. .......++++.+++. ++++-..+..+..++...................++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 76666666665544433221 11 2234578999999998 666666667777777544332221112234457888
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+.++ +..+++...++.|..+|.+.................++++++|+++++.. ..+.|..++..... ...+.
T Consensus 147 ~~~~--g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 147 VDNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp ECTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEEEECTTCSC-CEECC
T ss_pred ecCC--CCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec----CCCEEEEEeCCCCe-EEEEc
Confidence 8764 47788888889999998776544433334445678999999998777664 36778888765443 22222
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
...-.....++++++|+.+++-..++.|+..+.
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 221124678999999987777666676765543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=3.4e-07 Score=96.62 Aligned_cols=238 Identities=14% Similarity=0.115 Sum_probs=152.5
Q ss_pred ceEEEEeecCCCEEEEEe--------CCeEEEEECCCccEEEEEeCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001159 843 SAACIALSKNDSYVMSAS--------GGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIY 910 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~--------dg~i~vwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~lasg~~dg~v~iw 910 (1135)
....++|.++|++.++.. +|+|..||..++......... .+.-..++|++ ++..|+++...+.|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 456789999999887643 367999999887654443221 12357899999 77777777777778888
Q ss_pred EcccceeeEEecCcCC----CeEEEEEcCCCCeEEEEcC---------------CCcEEEEeCCCCceeceeeeecCCCC
Q 001159 911 NVRVDEVKTKLKGHQN----RITGLAFSPTLNALVSSGA---------------DAQLCMWSIDKWEKLKSRFIQAPAGR 971 (1135)
Q Consensus 911 d~~~~~~~~~l~~h~~----~i~~l~~s~d~~~l~s~~~---------------D~~i~iwd~~~~~~~~~~~~~~~~~~ 971 (1135)
+.+++..........+ ....+++.++|.+.+|-.. +|.|..++.+. +.. . .....
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~-~-~~~~~--- 171 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI-Q-VDTAF--- 171 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE-E-EEEEE---
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee-E-eeCCc---
Confidence 8775543221111111 3578999999998887532 22344444332 211 1 11111
Q ss_pred CCCCCCceEEEECCCCc----EEEE--EecCeEEEEec-CCceee---ccCC-CCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001159 972 QSPLVGETKVQFHNDQT----HLLV--VHESQISVYDS-KLECSR---SWSP-KDALPAPISSAIYSCDGLLVYAGFCDG 1040 (1135)
Q Consensus 972 ~~~~~~v~~~~~s~dg~----~l~~--~~d~~v~vwd~-~~~~~~---~~~~-~~~h~~~i~~~~~s~d~~~l~~~~~dg 1040 (1135)
.....++|+|++. .|.+ +..+.|..|++ ....+. .+.. ...+......+++..+|++.++....+
T Consensus 172 ----~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 172 ----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp ----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ----ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 1236789998874 4544 35788888887 222221 1111 111123457899999999888877889
Q ss_pred eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEecCCcEEEEecCC
Q 001159 1041 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1041 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~~W~~~~ 1102 (1135)
.|.+||.++++.+..+.... ..+.+++|.| |++ +++|.+.+|+|...++..
T Consensus 248 ~I~~~dp~~g~~~~~i~~p~----------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCPF----------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBSCSEEEECSS----------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEeCCCCEEEEEEECCC----------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCC
Confidence 99999999888776655321 3466899988 554 667778888888888754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.83 E-value=1.6e-06 Score=91.71 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=149.6
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEcccc
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVD 915 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~ 915 (1135)
...+..++|.++|++.++-. +++|..|+..+.+....+.........+++++ +|+++++...+ +.+...+..++
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence 34457899999999666544 78999999988777766666667789999999 88877765432 33555555544
Q ss_pred eeeEEecC--cCCCeEEEEEcCCCCeEEEEcCC------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 916 EVKTKLKG--HQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 916 ~~~~~l~~--h~~~i~~l~~s~d~~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
........ -......+++.++|.+.++.... +.+..++.+..... ...... .....++|+||+
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg 188 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDE 188 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTS
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeecccc
Confidence 43333321 12357889999999987775332 23444444433211 111111 234689999999
Q ss_pred cEEEEE--ecCeEEEEec--CCceeecc----CCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 988 THLLVV--HESQISVYDS--KLECSRSW----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 988 ~~l~~~--~d~~v~vwd~--~~~~~~~~----~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
+.|.++ ..+.|..|++ .+...... ............+++.++|++.++....+.|.+|+- .|+.+.++...
T Consensus 189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P 267 (319)
T d2dg1a1 189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 267 (319)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence 977664 5789999987 22221110 000111223568999999998888888999999995 68998887643
Q ss_pred eeccccccCCCCccEEEEecCCCCCEEEEEe
Q 001159 1060 AYIPTYAVSNTAHPLVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 1090 (1135)
. ........+.+++|.|. .+.+++..
T Consensus 268 ~----~~~~~~~~~~~~~~~~~-~~~~~~t~ 293 (319)
T d2dg1a1 268 G----RDEGHMLRSTHPQFIPG-TNQLIICS 293 (319)
T ss_dssp T----GGGTCSCBCCEEEECTT-SCEEEEEE
T ss_pred C----cCCCcCceeeeEEEeCC-CCEEEEEc
Confidence 2 22233355678999884 44554443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.76 E-value=2.2e-06 Score=90.22 Aligned_cols=243 Identities=11% Similarity=0.051 Sum_probs=149.4
Q ss_pred ceEEEEEcCCCCeEEEEeC-------CCeEEEEEeCCCCceeeee-EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 410 SVNRCVWGPDGLMLGVAFS-------KHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~-------dg~i~iwd~~~~~~~~~~~-~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..-.++|.|+|+++++... +++|..||..++....... ....-.+.-..++|.+++. .++.+...+.|..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEEEECCCeEEE
Confidence 3566899999998876533 4678888888765322100 0111122357899999998 5666666667888
Q ss_pred EEcCCCeeeeeecCCCC----CeeEEEeeccCCccEEEEEEc---------------CCeEEEEeCcCCCceeEecCCCC
Q 001159 482 WDVVAGRKQYTFEGHEA----PVYSVCPHHKESIQFIFSTAI---------------DGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~----~v~~i~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~ 542 (1135)
.|...+..........+ ..+.+++.++ |.+.++-.. +|.|..++. ......+...-.
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~--dg~~~~~~~~~~ 172 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQMIQVDTAFQ 172 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSCEEEEEEEES
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCC--CCEEEecCccCcccccccceeccCCceEEEEee--cCceeEeeCCcc
Confidence 89765543221111111 2567888664 466665422 233443433 222222222223
Q ss_pred cEEEEEEcCCCC----EEEEEecCCCCCCeEEEEECCCC-eEE-----EEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 543 WCTMMAYSADGT----RLFSCGTSKEGESHLVEWNESEG-AIK-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 543 ~i~~~~~s~~~~----~l~~~~~~~~~~~~i~~wd~~~~-~~~-----~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
..+.++|+++++ .|+++.. ..+.|+.||+... ... ..+.+........+++..+|+.+++....+.|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I 249 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred eeeeeEECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence 446788988765 4555432 3678888886533 221 12222222235679999999988888788999
Q ss_pred EEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCC
Q 001159 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSD 663 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 663 (1135)
.+||.+.++.+..+..... ...+++|.|+++.| ++.+.+|.|..+++..
T Consensus 250 ~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 250 EVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 9999998887777765433 57899999999755 5555678888777643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.73 E-value=2e-06 Score=91.02 Aligned_cols=230 Identities=9% Similarity=0.023 Sum_probs=143.7
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..++|.++|+..++-..++.|..|+ +.++......... ......+++++||+++
T Consensus 43 EG~~~D~~G~Ly~~D~~~g~I~ri~----------------------p~g~~~~~~~~~~----~~~p~gla~~~dG~l~ 96 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVFEGNIFKIN----------------------PETKEIKRPFVSH----KANPAAIKIHKDGRLF 96 (319)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEEC----------------------TTTCCEEEEEECS----SSSEEEEEECTTSCEE
T ss_pred EeCEECCCCCEEEEECCCCEEEEEE----------------------CCCCeEEEEEeCC----CCCeeEEEECCCCCEE
Confidence 7889999998666555677666553 3333222222222 5567899999999988
Q ss_pred EEEe-C----CeEEEEECCCccEEEEEeC--CCCCeEEEEEecCCCcEEEEEeC------CCcEEEEEcccceeeEEecC
Q 001159 857 MSAS-G----GKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGME------DSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 857 a~~~-d----g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~lasg~~------dg~v~iwd~~~~~~~~~l~~ 923 (1135)
++.. + +.+...+..+......... .......+++.+ +|++.++... .+.+..++...+ .+..+..
T Consensus 97 va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~ 174 (319)
T d2dg1a1 97 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQ 174 (319)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEE
T ss_pred EEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccc-eeEEEee
Confidence 7754 2 3456666655554444332 123578899999 7887665432 133555554433 3333333
Q ss_pred cCCCeEEEEEcCCCCeE-EEEcCCCcEEEEeCCCCceecee----eeecCCCCCCCCCCceEEEECCCCcEEEE-EecCe
Q 001159 924 HQNRITGLAFSPTLNAL-VSSGADAQLCMWSIDKWEKLKSR----FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ 997 (1135)
Q Consensus 924 h~~~i~~l~~s~d~~~l-~s~~~D~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 997 (1135)
.-.....|+|+||++.| ++-+..+.|..|+++........ ......+. ...-.+++.++|++.++ ..++.
T Consensus 175 ~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~----~~PdGl~vD~~G~l~Va~~~~g~ 250 (319)
T d2dg1a1 175 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGR 250 (319)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTE
T ss_pred ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc----cceeeeeEcCCCCEEEEEcCCCE
Confidence 33456889999999855 55567888999988643221111 11111111 22457999999998777 57899
Q ss_pred EEEEecCCceeeccCCCC---CCCCCEEEEEEeeCCCEEEEEeC
Q 001159 998 ISVYDSKLECSRSWSPKD---ALPAPISSAIYSCDGLLVYAGFC 1038 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~---~h~~~i~~~~~s~d~~~l~~~~~ 1038 (1135)
|.+||.+++.+..+.... ++...+++++|.+++..+++...
T Consensus 251 V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 251 VLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 999999888776654331 23446789999998877766543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.53 E-value=5.7e-06 Score=85.72 Aligned_cols=235 Identities=10% Similarity=0.037 Sum_probs=130.1
Q ss_pred EEecC--CCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC-C
Q 001159 353 DFHPQ--QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-K 429 (1135)
Q Consensus 353 ~~sp~--g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~-d 429 (1135)
..||| |++++++. +|.|.+.|+.+++... +..+.+.+...+|||||+.||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99777664 5678888999876542 4557778999999999999997643 1
Q ss_pred -----CeEEEEEeCCCCceeeee---EeecccCCEEEEEEecCCCeEEEEEEcC------CCcEEEEEcCCCeeeeeecC
Q 001159 430 -----HIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 430 -----g~i~iwd~~~~~~~~~~~---~l~~h~~~v~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~ 495 (1135)
..|.+++..+++...... ............+|+|||+ .|+.... ...+...+...+......
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-- 138 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC--
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec--
Confidence 247777777765432110 0111223457789999999 4554321 224556665555443222
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCC-----------eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDG-----------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
........+ +.+ +..++....+. ....+... ..................++++ .++... +.+
T Consensus 139 -~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 211 (281)
T d1k32a2 139 -LGPATHILF-ADG-RRVIGRNTFELPHWKGYRGGTRGKIWIEVN-SGAFKKIVDMSTHVSSPVIVGH--RIYFIT-DID 211 (281)
T ss_dssp -SCSCSEEEE-ETT-EEEEEESCSCCTTSTTCCSTTCCEEEEEEE-TTEEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred -CCccceeee-cCC-CeEEEeeccccceeeeeccCCcceeeeecc-ccceeeccCCccccceeeeecc--ccceec-ccc
Confidence 222222222 221 12333222111 11111111 1112222222333344455554 333333 234
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+...|+++|+.++...+ +..... .....|+|||+.|+.. .++.|+++|+.+++...
T Consensus 212 ~~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp SSCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred cccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 56789999988766543 333332 2334689999988764 46889999998877543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.39 E-value=7.9e-05 Score=77.04 Aligned_cols=187 Identities=12% Similarity=0.073 Sum_probs=126.1
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeC----CCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEc
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGME----DSSVQIYNV 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd~ 912 (1135)
...+.++++.++|.++++. ...|.++|..+++....... ....++.+.+.| +|++.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEE-eCccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeee
Confidence 5568899999999877754 55699999998876443322 123578899999 7776665432 234567777
Q ss_pred ccceeeEEecCcCCCeEEEEEcCCCCeE-EEEcCCCcEEEEeCCCCcee--cee-eeecCCCCCCCCCCceEEEECCCCc
Q 001159 913 RVDEVKTKLKGHQNRITGLAFSPTLNAL-VSSGADAQLCMWSIDKWEKL--KSR-FIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 913 ~~~~~~~~l~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~iwd~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
..++....+.+ -.....++|+++++.+ ++-+..+.|..++++..... ... ......+.. ...-.+++..+|.
T Consensus 136 ~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~---g~pdG~~vD~~Gn 211 (295)
T d2ghsa1 136 AKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGH 211 (295)
T ss_dssp ETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSC
T ss_pred cCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccc---ccccceEEcCCCC
Confidence 77765554443 3456889999999865 45566788888887543211 111 111111111 3457889999999
Q ss_pred EEEEE-ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEe-eCCCEEEEE
Q 001159 989 HLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDGLLVYAG 1036 (1135)
Q Consensus 989 ~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s-~d~~~l~~~ 1036 (1135)
+.++. ..+.|..||.+++.+..+... ...+++++|- +|.+.|++.
T Consensus 212 lWva~~~~g~V~~~dp~G~~~~~i~lP---~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 212 IWNARWGEGAVDRYDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEEEETTTEEEEECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEE
T ss_pred EEeeeeCCCceEEecCCCcEeeEecCC---CCceEEEEEeCCCCCEEEEE
Confidence 88874 678899999988888777654 3468999996 676665543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.36 E-value=0.00014 Score=75.16 Aligned_cols=222 Identities=9% Similarity=0.088 Sum_probs=144.7
Q ss_pred EEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec
Q 001159 845 ACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
....|++....|.-.+ .++|.-||..+++.. .+. ....+.++++.+ ++.+++ ++.+ .+.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~v-a~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLI-ASDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEE-EETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEE-EEeC-ccEEeecccceeeEEee
Confidence 3567887666565555 689999999887653 333 345788999998 777766 4555 48899999887543222
Q ss_pred --C--cCCCeEEEEEcCCCCeEEEEcCC----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-
Q 001159 923 --G--HQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV- 993 (1135)
Q Consensus 923 --~--h~~~i~~l~~s~d~~~l~s~~~D----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~- 993 (1135)
. ....+..+.+.|+|.+.++...+ +.-.+|.+..++... ..... .....++|+++++.+..+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~~~-------~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFADI-------SIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEEEE-------SSEEEEEECTTSCEEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--Eeecc-------CCcceeeecCCCceEEEee
Confidence 1 12357899999999988775432 345667666654221 11111 234789999999977764
Q ss_pred -ecCeEEEEecCCc--e----eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccc
Q 001159 994 -HESQISVYDSKLE--C----SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1066 (1135)
Q Consensus 994 -~d~~v~vwd~~~~--~----~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
..+.|..|+++.. . ...+....+.......+++..+|.+.++.-..+.|..||- +|+.+..+....
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~------ 239 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG------ 239 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC------
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC------
Confidence 5678888887221 1 1111111122445788999999998777767889999995 688888877442
Q ss_pred cCCCCccEEEEecCCCCC-EEEEEec
Q 001159 1067 VSNTAHPLVIAPHPSEPN-QIALGMS 1091 (1135)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~-~l~sg~~ 1091 (1135)
..+.+++|-..|.+ +++|...
T Consensus 240 ----~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 240 ----KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ----SBEEEEEEESTTSCEEEEEEBC
T ss_pred ----CceEEEEEeCCCCCEEEEEECC
Confidence 35678899654544 4455443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.23 E-value=3.4e-05 Score=79.56 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=123.4
Q ss_pred eeecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccc-----eEEEEEcCCccccccCCceeecc
Q 001159 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG-----DISLWEVGSRERLAHKPFKVWDI 392 (1135)
Q Consensus 318 v~~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 392 (1135)
|+|..+| .+|..+...++..+...+.+.+...+|||||++|+++...++ .|.+++..+++...-...
T Consensus 15 v~f~~~~---dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~----- 86 (281)
T d1k32a2 15 IIFVCCD---DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF----- 86 (281)
T ss_dssp EEEEETT---EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC-----
T ss_pred EEEEeCC---cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec-----
Confidence 4454444 256666666666665667788999999999998776654332 477778777765321000
Q ss_pred cccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCC------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCC
Q 001159 393 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466 (1135)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~ 466 (1135)
..............+|+|||+.|+..... ..+...+..++... . .+...... .+.+++.
T Consensus 87 --------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~-~~~~~~~ 151 (281)
T d1k32a2 87 --------SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----P--LNLGPATH-ILFADGR 151 (281)
T ss_dssp --------CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----E--CCSCSCSE-EEEETTE
T ss_pred --------CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE----E--ecCCccce-eeecCCC
Confidence 00011223456788999999999886432 23455555543211 1 12222333 3445555
Q ss_pred eEEEEEEcCCC-----------cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC--eEEEEeCcCCCc
Q 001159 467 QLCIVTCGDDK-----------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGS 533 (1135)
Q Consensus 467 ~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~ 533 (1135)
. .++....+. ...+.......... ...+........+.+. ..+.....++ .|.++|++....
T Consensus 152 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~d~~g~~~ 226 (281)
T d1k32a2 152 R-VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDL 226 (281)
T ss_dssp E-EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSC
T ss_pred e-EEEeeccccceeeeeccCCcceeeeeccccceee-ccCCccccceeeeecc---ccceecccccccceEEEeCCCCce
Confidence 3 333332221 12222222222222 2223334444444332 2333333333 466777776654
Q ss_pred eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 534 RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 534 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
..........+ ..|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 227 ~~lt~~~~~~~--~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 227 RKHTSFTDYYP--RHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp EECCCCCSSCE--EEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred EEeecCCCccc--ccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 43322222233 46899999988754 56799999988876543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.00 E-value=0.0081 Score=62.07 Aligned_cols=165 Identities=11% Similarity=0.071 Sum_probs=101.2
Q ss_pred eEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCc-------------cEEEEEEcCCeEEEEeCcCCCc
Q 001159 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-------------QFIFSTAIDGKIKAWLYDYLGS 533 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-------------~~l~s~s~dg~i~iwd~~~~~~ 533 (1135)
+..|.||+..|.|+|+-+.+++.++.+.-....-. --|-.+++. .+|.. ..+.+..|
T Consensus 13 yy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~-~G~G~~~es~~il~~~~~~~t~~~l~~--~g~~~~~~------- 82 (459)
T d1fwxa2 13 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAA--NGKRIHDN------- 82 (459)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCC----------------CCC-------
T ss_pred EEEEeeCCccceEEEEecCCcceEEEeeeecCCCC-cccCcchhHHHHhhcccChhhhhhhhc--cCcccccC-------
Confidence 34688999999999999999998887642110000 000000000 01110 00111112
Q ss_pred eeEecCCCCcEEEEEEcC---CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec--CCCCEEEEEeC
Q 001159 534 RVDYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGD 608 (1135)
Q Consensus 534 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s--~~~~~l~~~~~ 608 (1135)
...--..+.+.. ||++|++.. ..+.+|.+.|+.+.+..+.........+..+... |+-.++++++.
T Consensus 83 ------GD~HHP~~S~TdGtyDGrylFVND---kan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e 153 (459)
T d1fwxa2 83 ------GDLHHVHMSFTEGKYDGRFLFMND---KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGE 153 (459)
T ss_dssp ------CCBCCEEEEEETTEEEEEEEEEEE---TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEEC
T ss_pred ------CCcCCCcccccCCccceeEEEEEc---CCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCc
Confidence 011112455544 899999875 3588999999999998776655544456666664 45567777665
Q ss_pred CC------------------eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 609 EF------------------QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 609 dg------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+. .+.++|..+.+....+.... ....+.++++|+++++.+.+
T Consensus 154 ~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 154 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp SCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred cccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 32 36788999988887776543 35689999999999988753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.86 E-value=0.0015 Score=67.73 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=125.5
Q ss_pred EEEeec---CCCEEEEEe--CCeEEEEECCCccEEEEEeCC-CCCeEEEEEecC-CCcEEEEEeCC--------------
Q 001159 846 CIALSK---NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQ-DNNIIAIGMED-------------- 904 (1135)
Q Consensus 846 ~l~~s~---dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~sp~-~~~~lasg~~d-------------- 904 (1135)
.+.+.. ||+++.+.. +++|.+.|+++.++.+.+.-. ...+..+...++ .-.+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 555554 899999998 689999999999987765543 345677776541 34566666553
Q ss_pred ----CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC---------------cEEEE-------------
Q 001159 905 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA---------------QLCMW------------- 952 (1135)
Q Consensus 905 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~---------------~i~iw------------- 952 (1135)
+.+.+.|..+.+....+.- .+....+++++||+++++.+.+. .+.++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2366788888887766542 34567899999999999876431 12233
Q ss_pred ----------eCCCCce-eceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEec-CCceee--------c
Q 001159 953 ----------SIDKWEK-LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS-KLECSR--------S 1010 (1135)
Q Consensus 953 ----------d~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~-~~~~~~--------~ 1010 (1135)
|...... .....+.... ....+.++|||++++++ -+.++.|+|+ +..... .
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred cEEeCCceeecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 3222100 0111122222 24578999999999996 4789999998 322110 0
Q ss_pred cCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1011 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1011 ~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
........-.-..-+|+.+|.-..+---|..|.-|++..
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 001111133456778998887666667899999999864
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.76 E-value=0.0071 Score=68.13 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=113.0
Q ss_pred EEEEcCCCcEEEEEcC-CCeeeeeecCCCC----------Ce-eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 470 IVTCGDDKMIKVWDVV-AGRKQYTFEGHEA----------PV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~----------~v-~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
+++.+.++.|.-.|.. +|+.+.++..... .+ ..+++. +..++.++.||.+...|.++++.....
T Consensus 66 yv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 66 YVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhccc
Confidence 3333346778888874 6888877642110 00 122332 146888899999999999998876654
Q ss_pred cCCCC----cEEEEEEcCCCCEEEEEecC--CCCCCeEEEEECCCCeEEEEeecccC-----------------------
Q 001159 538 DAPGN----WCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRK----------------------- 588 (1135)
Q Consensus 538 ~~~~~----~i~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------- 588 (1135)
..... .++..-.-.++ .++.+... ....+.|+-+|..+|+.+..+.....
T Consensus 142 ~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred cccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence 33211 11111111233 33333321 12367899999999999987653210
Q ss_pred -------------Cce-eEEEecCCCCEEEEEeC----------------CCeEEEEECCCCceEEEEeCCCCC------
Q 001159 589 -------------RSL-GVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGL------ 632 (1135)
Q Consensus 589 -------------~~v-~~i~~s~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~------ 632 (1135)
..+ ...++++....++.+.. ...+...|.++++.+..++...+.
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccc
Confidence 011 23566777777776543 346788899999999888754321
Q ss_pred -CCcceEEEcCCCC---EEEEEECCCcEEEEEcCCCc
Q 001159 633 -PASPRLRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 633 -~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.......+..+++ .++.++.+|.+.++|..+++
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 1111122223443 56778889999999999994
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.70 E-value=0.016 Score=65.48 Aligned_cols=196 Identities=12% Similarity=0.055 Sum_probs=114.8
Q ss_pred EEEEEcCCCcEEEEEc-CCCeeeeeecCCC----------CCe-eEEEeecc--CCccEEEEEEcCCeEEEEeCcCCCce
Q 001159 469 CIVTCGDDKMIKVWDV-VAGRKQYTFEGHE----------APV-YSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGSR 534 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~----------~~v-~~i~~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~ 534 (1135)
++++++.++.+...|. .+|+.+.++.... ..+ ..+++.+. ....+++.++.|+.+.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3344454566776775 4687776653211 011 22344332 12347889999999999999998887
Q ss_pred eEecCCCC----cEEEEEEcCCCCEEEEEecC--CCCCCeEEEEECCCCeEEEEeeccc---------------------
Q 001159 535 VDYDAPGN----WCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFR--------------------- 587 (1135)
Q Consensus 535 ~~~~~~~~----~i~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~--------------------- 587 (1135)
..+..... .++.--.- -+..++++... ....+.|+-+|..+|+++.++....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~ 223 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK 223 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred ccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence 76543211 11110000 13344444321 1235889999999999998865321
Q ss_pred ----------------CCceeEEEecCCCCEEEEEeC----------------CCeEEEEECCCCceEEEEeCCCCC---
Q 001159 588 ----------------KRSLGVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGL--- 632 (1135)
Q Consensus 588 ----------------~~~v~~i~~s~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~--- 632 (1135)
...-..+++++..+.++.+.. ...|.-.|+++++.+..++...+.
T Consensus 224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd 303 (596)
T d1w6sa_ 224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWD 303 (596)
T ss_dssp THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccC
Confidence 001223566777777776542 234778899999998877643321
Q ss_pred ----CCcceEEE-cCCC---CEEEEEECCCcEEEEEcCCCc
Q 001159 633 ----PASPRLRF-NKEG---SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 633 ----~~v~~~~~-~~~~---~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.....+.. ..+| +.++....+|.+.++|..+++
T Consensus 304 ~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 304 YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 01111111 2344 367778889999999999993
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.65 E-value=0.0066 Score=65.09 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=133.7
Q ss_pred CeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-C-CeEEEEECCCccEEEEEeCC-CCCeEEEEEecCCC
Q 001159 819 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G-GKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDN 895 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-d-g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~ 895 (1135)
..+||+.++.-.........| .......++.+||++++.|+ + ..+.+||..+..-...-... ...-.+++..+ |+
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG 131 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DG 131 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TS
T ss_pred EEEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CC
Confidence 345677766532211111112 33345678889999999987 3 68999999876543221111 12234567777 78
Q ss_pred cEEEEEeCC------CcEEEEEcccceeeEE--e-------cCcC-----CCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 896 NIIAIGMED------SSVQIYNVRVDEVKTK--L-------KGHQ-----NRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 896 ~~lasg~~d------g~v~iwd~~~~~~~~~--l-------~~h~-----~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
++++.|+.+ ..+.+||..+.+-... . ..+. +.-..+...++|+.++.++.++.+.+++..
T Consensus 132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 211 (387)
T d1k3ia3 132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 211 (387)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence 899888753 3689999887642211 0 0010 011123344677888887777777778777
Q ss_pred CCceeceeeeecCCCCCCCCCCceEEEE-CCCCcEEEEEe-c--------CeEEEEec---CC--ceeeccCCCCCCCCC
Q 001159 956 KWEKLKSRFIQAPAGRQSPLVGETKVQF-HNDQTHLLVVH-E--------SQISVYDS---KL--ECSRSWSPKDALPAP 1020 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~dg~~l~~~~-d--------~~v~vwd~---~~--~~~~~~~~~~~h~~~ 1020 (1135)
+.....................-.++.+ ..+++.++.+. . ....+.+. .. ....... ...+...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~r~ 290 (387)
T d1k3ia3 212 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN-GLYFART 290 (387)
T ss_dssp TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT-CCSSCCB
T ss_pred cCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc-ccccccc
Confidence 7653322111111111111111123333 34667666642 1 12333333 11 1111111 1111222
Q ss_pred EEEEEEeeCCCEEEEEeCCC-----------eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEE
Q 001159 1021 ISSAIYSCDGLLVYAGFCDG-----------AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg-----------~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 1089 (1135)
-.+.+..+||+++++|+.+. .+.+||.++.+-... ... + .....+. +....+ ||++++.|
T Consensus 291 ~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~-~~~---~---~~R~~Hs-~a~l~~-dG~v~v~G 361 (387)
T d1k3ia3 291 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NPN---S---IVRVYHS-ISLLLP-DGRVFNGG 361 (387)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CCC---S---SCCCTTE-EEEECT-TSCEEEEE
T ss_pred cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC-CCC---C---CcccceE-EEEECC-CCEEEEEe
Confidence 23556668999999988542 478899887754321 111 1 1111121 222345 78899998
Q ss_pred ec
Q 001159 1090 MS 1091 (1135)
Q Consensus 1090 ~~ 1091 (1135)
+.
T Consensus 362 G~ 363 (387)
T d1k3ia3 362 GG 363 (387)
T ss_dssp CC
T ss_pred CC
Confidence 85
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.65 E-value=0.033 Score=54.23 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=133.9
Q ss_pred EEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eeeEEecC
Q 001159 845 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 923 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~ 923 (1135)
.+.-.+|..+.||.-+..++.++|+++.+.++.+.- ...|.-=.|-. .+.|+..+ +..|+-|+++.. ++.+.+.-
T Consensus 66 dsAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR 141 (327)
T d1utca2 66 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 141 (327)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhh
Confidence 355677999999988888999999999998888773 34666666764 45676665 457999999643 46666665
Q ss_pred cC----CCeEEEEEcCCCCeEEEEc---C----CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-----
Q 001159 924 HQ----NRITGLAFSPTLNALVSSG---A----DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----- 987 (1135)
Q Consensus 924 h~----~~i~~l~~s~d~~~l~s~~---~----D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----- 987 (1135)
|. ..|..-..+++.++++..| . .|.+.+|..+.+. -+...||. ..-..+.-+|
T Consensus 142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~------sQ~ieGha-----a~F~~~~~~g~~~~~ 210 (327)
T d1utca2 142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHA-----ASFAQFKMEGNAEES 210 (327)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSE-----EEEEEECCTTCSSCE
T ss_pred cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc------Ccccccee-----eeeEEEEcCCCCCCc
Confidence 54 3577888899999888654 2 3678899888754 33445553 1222222222
Q ss_pred cEEEEE----ecCeEEEEec-CCc---e------eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceee
Q 001159 988 THLLVV----HESQISVYDS-KLE---C------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1053 (1135)
Q Consensus 988 ~~l~~~----~d~~v~vwd~-~~~---~------~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~ 1053 (1135)
+.++.+ ..+++.|-++ ... . ...+.+.+.-..--.++..|+.-..+..-+.-|.|++||++||.++
T Consensus 211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 223323 2367888888 211 1 1223333333455678899998888888899999999999999999
Q ss_pred eeeC
Q 001159 1054 CRIG 1057 (1135)
Q Consensus 1054 ~~~~ 1057 (1135)
+.-+
T Consensus 291 ~~nR 294 (327)
T d1utca2 291 YMNR 294 (327)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8655
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=0.036 Score=53.99 Aligned_cols=253 Identities=9% Similarity=0.076 Sum_probs=146.4
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
..++.+.|+..+..+..-.-. -.+.-++|..+.|+.-+ ..++.++|+++.+.++...... .|.--.|-. .+
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis-~~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESS-SS
T ss_pred CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecC-CC
Confidence 567889999865533222211 12355789888887755 5689999999999999988764 344445543 34
Q ss_pred EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc
Q 001159 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
.|+..+.. .|.-|+++......+.+..|..-
T Consensus 115 ~L~lVT~t-aVYHW~~~g~s~P~k~fdR~~~L------------------------------------------------ 145 (327)
T d1utca2 115 TVALVTDN-AVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 145 (327)
T ss_dssp EEEEECSS-EEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred EEEEEcCC-ceEEEcccCCCCchhhhhhcccc------------------------------------------------
Confidence 66666544 89999986543333333332210
Q ss_pred ccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc-------cceee
Q 001159 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS-------NAVHK 798 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~-------dg~i~ 798 (1135)
...+| .....++++++++..+- .|.+.
T Consensus 146 ---------------------------------------------~~~QI-InY~~d~~~kW~~l~GI~~~~~~i~G~mQ 179 (327)
T d1utca2 146 ---------------------------------------------AGCQI-INYRTDAKQKWLLLTGISAQQNRVVGAMQ 179 (327)
T ss_dssp ---------------------------------------------TTCEE-EEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred ---------------------------------------------cCceE-EEEEECCCCCEEEEEeEecCCCceeEEEE
Confidence 12333 55555666666554432 25666
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC---CCEEEEEe----CCeEEEEECCC
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS----GGKVSLFNMMT 871 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d---g~~la~~~----dg~i~vwd~~~ 871 (1135)
+|+...+.. . .+.| | ......+.+.-+ .+.++.+. .+++.|.++..
T Consensus 180 LYS~er~~s----------------------Q--~ieG--h-aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~ 232 (327)
T d1utca2 180 LYSVDRKVS----------------------Q--PIEG--H-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 232 (327)
T ss_dssp EEETTTTEE----------------------E--EECC--S-EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSC
T ss_pred EEEeccCcC----------------------c--cccc--e-eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCC
Confidence 765543211 1 1111 2 111111111100 01233332 36899999865
Q ss_pred cc--------EEEEEe----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCe
Q 001159 872 FK--------VMTMFM----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 939 (1135)
Q Consensus 872 ~~--------~~~~~~----~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~ 939 (1135)
.. ....+. ...+--.++.+|+ .-.++..-+.-|.|++||++++.++..-+--.+.|..-+-..+..-
T Consensus 233 ~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~G 311 (327)
T d1utca2 233 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 311 (327)
T ss_dssp CCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE
T ss_pred CccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCce
Confidence 21 111111 1234467888998 6778888999999999999999998876655666765555555455
Q ss_pred EEEEcCCCcEE
Q 001159 940 LVSSGADAQLC 950 (1135)
Q Consensus 940 l~s~~~D~~i~ 950 (1135)
++....+|.|.
T Consensus 312 i~~VNr~GqVl 322 (327)
T d1utca2 312 IIGVNRKGQVL 322 (327)
T ss_dssp EEEEETTSEEE
T ss_pred EEEECCCCeEE
Confidence 55666666554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=0.041 Score=54.53 Aligned_cols=224 Identities=10% Similarity=0.003 Sum_probs=141.0
Q ss_pred CCCcceEEEEEcCCCCeEEEEe-CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+...+.+++|.+.++.|.-+. .++.|+..++++..... .+..-...+.++++..-+.. +..+-...+.|.+.++
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence 3455688899998877776664 56778888887654322 23233356889999876764 3445566789999998
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCe--EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
........+...-.....++++|.. |.++.+-...+. |..-+++...........-.....+++.+.++.|+.+..
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~- 186 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred CCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC-
Confidence 7554433333334568899998875 234444333233 444455544444433334456789999998888877642
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
+.+.|...|+........+.+.. ....+++. +.+|+.. ...+.|...|..+++.+..+..... .....+++.
T Consensus 187 --~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v~ 259 (263)
T d1npea_ 187 --GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIA 259 (263)
T ss_dssp --TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEE
T ss_pred --CCCEEEEEECCCCCeEEEECCCC--CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEEe
Confidence 46789999987555444444433 23467765 4455544 4678899999999888776643322 244566655
Q ss_pred C
Q 001159 642 K 642 (1135)
Q Consensus 642 ~ 642 (1135)
+
T Consensus 260 ~ 260 (263)
T d1npea_ 260 L 260 (263)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.59 E-value=0.0058 Score=69.09 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=112.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCC----------CCee-EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE----------APVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~----------~~v~-~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.++.++.++.|.-+|.++|+.+.++.... ..+. .+.+. . ..++.++.|+.+...|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~--~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K--GKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--C--CcEEEEecccceeeeccccccceecc
Confidence 46667778889999999999988764211 0111 12221 1 46778888999998898888877654
Q ss_pred cCCCC---cEEEEEEcC--CCCEEEEEec--CCCCCCeEEEEECCCCeEEEEeecccC----------------------
Q 001159 538 DAPGN---WCTMMAYSA--DGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1135)
Q Consensus 538 ~~~~~---~i~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1135)
..... .+. +.-.| -+..+++++. .....+.|+.+|.++|+.+..+.....
T Consensus 155 ~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 155 NTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp ETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 33211 110 00011 1234444432 122357899999999999988643210
Q ss_pred --------Cce-eEEEecCCCCEEEEEeC-------------------CCeEEEEECCCCceEEEEeCCCCC-------C
Q 001159 589 --------RSL-GVVQFDTTRNRFLAAGD-------------------EFQIKFWDMDNMNMLTTVDADGGL-------P 633 (1135)
Q Consensus 589 --------~~v-~~i~~s~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~ 633 (1135)
..+ ...+++++...++.+.. ...|...|+++++.....+...+. .
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 011 23556676666664331 124667788888887766543221 0
Q ss_pred CcceEEEcCCC---CEEEEEECCCcEEEEEcCCCch
Q 001159 634 ASPRLRFNKEG---SLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 634 ~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~ 666 (1135)
.........++ ..++.++.+|.+.++|..+++.
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~ 349 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeecceecCCCceeeeeeccccceeEEeccccccc
Confidence 11112222233 3677788899999999999943
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.59 E-value=0.045 Score=54.19 Aligned_cols=234 Identities=9% Similarity=-0.037 Sum_probs=144.1
Q ss_pred eEEEEeCCCeEEEEEeCCCCce--eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
+|+.+.. +.|+-.+++..... .....+..+...+..++|.+..+. ++.+-..++.|+..++..+.....+......
T Consensus 3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~ 80 (263)
T d1npea_ 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (263)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence 4444433 45777777654321 111233344556888999988775 4455566788999898766554444444456
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
+.++++.+..+ .+.++-...+.|.+.+++..............+..+++.|...+++..... .....|..-++.....
T Consensus 81 p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~-~~~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 81 PEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTNR 158 (263)
T ss_dssp EEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCCC
T ss_pred ccEEEEeccCC-eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecC-CCCcEEEEecCCCCCc
Confidence 88899876542 444555667899999998766555444444678899999988888755321 1233455556553332
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 658 (1135)
..+....-.....+++++.++.|+.+ ...+.|...+++.......+.... ...++++. ++.+..+-...+.|..
T Consensus 159 -~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~~I~~ 233 (263)
T d1npea_ 159 -RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVIA 233 (263)
T ss_dssp -EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred -eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCCEEEE
Confidence 22322222256789999888887665 467889999998655544444322 23577775 3333344445678888
Q ss_pred EEcCCC
Q 001159 659 LANSDG 664 (1135)
Q Consensus 659 wd~~~~ 664 (1135)
.|..++
T Consensus 234 ~~~~~g 239 (263)
T d1npea_ 234 MDLAIS 239 (263)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 888777
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.57 E-value=0.0063 Score=65.28 Aligned_cols=283 Identities=8% Similarity=-0.023 Sum_probs=144.0
Q ss_pred CeeEEEEecCCCeEEEEEecc-----c------eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNV-----G------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~d-----g------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
++.......+|+ +++.|+.+ + .+.+||..+++...... ....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEE
Confidence 344444556776 66666632 1 37789998876432100 01223333456788
Q ss_pred cCCCCeEEEEeCC-CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC------CcEEEEEcCCCee
Q 001159 417 GPDGLMLGVAFSK-HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRK 489 (1135)
Q Consensus 417 spd~~~las~~~d-g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~ 489 (1135)
.+||++++.|+.+ ..+.+||..+..-.. ...+... ..-.+++..+||+ +++.|+.+ ..+.+||..+.+-
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 9999999998765 579999998754321 1122111 1223567778888 67777643 3689999887653
Q ss_pred eeeec---------CCCCCe----eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC--C------C-CcEEEE
Q 001159 490 QYTFE---------GHEAPV----YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P------G-NWCTMM 547 (1135)
Q Consensus 490 ~~~~~---------~h~~~v----~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~------~-~~i~~~ 547 (1135)
...-. .+...+ ....+. ..+|..++.+..++.+.+++..+......... . . ..-..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEEE-eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 22100 010000 000111 12346666677777777777665433221100 0 0 011122
Q ss_pred EEcCCCCEEEEEecCCCC----CCeEEEEECCC---CeEEEEeec--ccCCceeEEEecCCCCEEEEEeCC---------
Q 001159 548 AYSADGTRLFSCGTSKEG----ESHLVEWNESE---GAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDE--------- 609 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~----~~~i~~wd~~~---~~~~~~~~~--~~~~~v~~i~~s~~~~~l~~~~~d--------- 609 (1135)
.-..+++.++.++..... .....+.+... ......... .....-.+....++++.+++|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 233466677776642211 11233333321 111111111 111122345566889988888743
Q ss_pred --CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 610 --FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 610 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
..+.+||..+.+-...-........-....+.+||+.++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899887653222111111101123456789999999884
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.54 E-value=0.015 Score=65.22 Aligned_cols=111 Identities=9% Similarity=0.018 Sum_probs=67.3
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC----------cE-EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----------WC-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~i-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..|+.++.++.|.-.|.++++.+..+..... .+ ..++. .+..++.+.. ++.|.-.|..+|+.+
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~----~g~l~Alda~tG~~~ 140 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeC----CCEEEEEECCCCcEE
Confidence 4677778888888888888887776542211 00 11111 1334555543 788999999999999
Q ss_pred EEeecccCCceeEEEecC--CCCEEEEEe------CCCeEEEEECCCCceEEEEeC
Q 001159 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..+..........+.-.| .+..++.+. ..|.|+-+|..+|+.+..+..
T Consensus 141 w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 887643221111111111 123444433 237799999999999988763
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.50 E-value=0.05 Score=58.67 Aligned_cols=249 Identities=10% Similarity=0.054 Sum_probs=137.2
Q ss_pred CeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.+..+++||||++++.+-+.+| .|++.|+.+|+.+.. . + .......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i--~~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-c-----------------c--ccccccceEEcCCCCEE
Confidence 3456688999997666655555 799999999986532 0 1 11122568999999988
Q ss_pred EEEeCC----------------CeEEEEEeCCCCceeeeeEeecc--cCCEEEEEEecCCCeEEEEEEc-CCCcEEEE--
Q 001159 424 GVAFSK----------------HIVHLYTYNPTGELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCG-DDKMIKVW-- 482 (1135)
Q Consensus 424 as~~~d----------------g~i~iwd~~~~~~~~~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iw-- 482 (1135)
+....+ ..|..|.+.++..-. ...+... ...+..+..+++++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 257788877753321 1133332 2346778889999963333332 23344444
Q ss_pred EcCCCee--------eeeecCCCCCeeEEEeeccCCccEEEEEE---cCCeEEEEeCcCCCce--e-EecCCCCcEEEEE
Q 001159 483 DVVAGRK--------QYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGSR--V-DYDAPGNWCTMMA 548 (1135)
Q Consensus 483 d~~~~~~--------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~--~-~~~~~~~~i~~~~ 548 (1135)
|+..... ...+......+.-+.. .+ +.+++... .++.|...++...... . .+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--EG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--CC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 5433211 1112222222322221 11 12333332 3466777777665432 2 2333444454444
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE--e--CCCeEEEEECCCCce
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--G--DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~--~--~dg~i~iwd~~~~~~ 622 (1135)
++..+.+|+.... .++...|++++..++.....+..... .+..+...++...+... + .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCCc-eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 4445566665442 24567899999998877655444333 56656555665544432 2 347888899988753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.48 E-value=0.039 Score=61.78 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=97.0
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCC----CCeeEEEeeccCCccEEEEEE------cCCeEEEEeCcCCCceeEec
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE----APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~----~~v~~i~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~ 538 (1135)
.++.++.|+.+.--|.++|+.+....... ..+++--.. . + ..++.+. .+|.|+-+|..+++.+..+.
T Consensus 117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v-~-~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-A-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeE-e-C-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 47778889999999999999876653211 111111010 1 1 3445554 36889999999998887543
Q ss_pred CCC-------------------------------------CcE-EEEEEcCCCCEEEEEecCC------------CCCCe
Q 001159 539 APG-------------------------------------NWC-TMMAYSADGTRLFSCGTSK------------EGESH 568 (1135)
Q Consensus 539 ~~~-------------------------------------~~i-~~~~~s~~~~~l~~~~~~~------------~~~~~ 568 (1135)
... ..+ ...++.+....++.+.... .....
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence 221 111 2346667777666554311 01356
Q ss_pred EEEEECCCCeEEEEeecccCC--------ceeEEEecCCCC---EEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 569 LVEWNESEGAIKRTYSGFRKR--------SLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~--------~v~~i~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+...|.++|+.+..+...... ......+..+++ .++.++.+|.+++.|..+++++.....
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~ 344 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeecc
Confidence 888999999999888754321 111122223443 456688999999999999998866543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.064 Score=53.18 Aligned_cols=231 Identities=9% Similarity=-0.007 Sum_probs=141.3
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe----eeeeecCCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHEA 498 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~~ 498 (1135)
|+.+.. ..|+..++++.... .+......+.+++|.+..+. +..+-..++.|.-.++.... ....+.....
T Consensus 4 Ll~s~~-~~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 4 LFFTNR-HEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp EEEECB-SSEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 444433 34888888765432 23334556889999988875 34444556777777664321 1122233334
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+..+++.+... .+.++-...+.|.+.+++.................+++.|...+|+.... ...+.|...++....
T Consensus 78 ~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dGs~ 154 (266)
T d1ijqa1 78 APDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD 154 (266)
T ss_dssp CCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCC
T ss_pred CcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCCCc
Confidence 567888876543 45555567789999999877666656655667889999997777775532 224567777765433
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
...+....-.....+++++.++.|+.+ ...+.|...+++..................++++.. +.+..+-..++.|.
T Consensus 155 -~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 155 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIF 232 (266)
T ss_dssp -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred -eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEE
Confidence 333332222256789999888877766 466889999997655444444433333345677663 33344444567777
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
..+..++
T Consensus 233 ~~~~~~g 239 (266)
T d1ijqa1 233 SANRLTG 239 (266)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 7776666
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.45 E-value=0.075 Score=59.68 Aligned_cols=192 Identities=13% Similarity=0.053 Sum_probs=112.1
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCC--------CCe-eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE--------APV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--------~~v-~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 539 (1135)
.|+.++.++.|.-.|..+|+.+.++.... ..+ ..+++. +..++.++.|+.+...|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe----CCceEEecCCCeEEEecccccceeeeecc
Confidence 46667778888889999999887764211 111 112221 25678889999999999998887654332
Q ss_pred CCC--------cEEEEEEcCCCCEEEEEecC---CCCCCeEEEEECCCCeEEEEeecccC--------------------
Q 001159 540 PGN--------WCTMMAYSADGTRLFSCGTS---KEGESHLVEWNESEGAIKRTYSGFRK-------------------- 588 (1135)
Q Consensus 540 ~~~--------~i~~~~~s~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~~~~~-------------------- 588 (1135)
... ......--..+..++..+.. ....+.|.-+|.++|+.+..+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 111 00011111123334333211 12356799999999999887643221
Q ss_pred -------------------Cc-eeEEEecCCCCEEEEEeC------------------------CCeEEEEECCCCceEE
Q 001159 589 -------------------RS-LGVVQFDTTRNRFLAAGD------------------------EFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 589 -------------------~~-v~~i~~s~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~ 624 (1135)
.. ...+++++..+.++.+.. ...+.-.|.++++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 01 123667777777776531 2347778899999888
Q ss_pred EEeCCCCCCCc-------ceEEEc-CCC---CEEEEEECCCcEEEEEcCCC
Q 001159 625 TVDADGGLPAS-------PRLRFN-KEG---SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 625 ~~~~~~~~~~v-------~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++...+.... .-+.+. .++ ..++..+.++.+.++|..++
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence 87654331111 111121 233 25666788999999999988
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.068 Score=52.99 Aligned_cols=215 Identities=8% Similarity=-0.056 Sum_probs=130.6
Q ss_pred CCcceEEEEEcCCCCeEEEEe-CCCeEEEEEeCCCCceeee-eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 407 AAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~-~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
....+.+++|.+.++.|.-.. .++.|.-.++......... ..+......+..+++.+.+.. +..+-...+.|.+.++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~ 106 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 106 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEec
Confidence 344577899999888776664 4566776666542211111 122223345778999887775 3445567789999998
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEE-EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
........+.........++++|.. |.++++. +..+.|...+++...........-.....+++.+.++.|+.+..
T Consensus 107 ~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~-- 183 (266)
T d1ijqa1 107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 183 (266)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCceEEEEEcCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC--
Confidence 7665555555555678899998864 2344443 23456766776654444444434456789999999988887642
Q ss_pred CCCCeEEEEECCCCeEEEEeecccC-CceeEEEecCCCCEEEEE-eCCCeEEEEECCCCceEEEEeC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..+.|...++.............. .....+++. +.+|+.+ ..++.|+..+..+++....+..
T Consensus 184 -~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 184 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred -CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 367899889865443333333221 134456665 3445444 4677888888877776665543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.38 E-value=0.035 Score=62.16 Aligned_cols=193 Identities=10% Similarity=0.073 Sum_probs=114.1
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCC----------Ce-eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA----------PV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~----------~v-~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.|+.++.++.|.-.|.++|+.+.++..... .+ ..++. .+..++.+..|+.+.-.|..+++.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce----eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 355566678888889999998877642211 00 01111 1257888899999999999888877655
Q ss_pred cCCCC-cEEEEEEcC--CCCEEEEEec--CCCCCCeEEEEECCCCeEEEEeeccc-------------------------
Q 001159 538 DAPGN-WCTMMAYSA--DGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFR------------------------- 587 (1135)
Q Consensus 538 ~~~~~-~i~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------- 587 (1135)
..... ....+.-.| ....++.+.. .....+.|.-+|.++|+.+..+..-.
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 43221 000010011 1223333322 11234679999999999998875321
Q ss_pred ----CC-ceeEEEecCCCCEEEEEeC-------------------CCeEEEEECCCCceEEEEeCCCCCC-------Ccc
Q 001159 588 ----KR-SLGVVQFDTTRNRFLAAGD-------------------EFQIKFWDMDNMNMLTTVDADGGLP-------ASP 636 (1135)
Q Consensus 588 ----~~-~v~~i~~s~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~-------~v~ 636 (1135)
.. .-..+++.+..+.++.+.. ...|.-.|+++++....++...+.. ...
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 00 1223567777777665331 2357778999999888776543310 011
Q ss_pred eEEEcCCC---CEEEEEECCCcEEEEEcCCCc
Q 001159 637 RLRFNKEG---SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 637 ~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
-+.+..++ ..++.++.+|.+.++|..+++
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~ 335 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCc
Confidence 12222233 366778889999999999994
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.13 Score=57.52 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=46.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC------CCc-ceEEEcCCCCEEEEEECCCcEEEEEcCCCchh
Q 001159 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PAS-PRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1135)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 667 (1135)
+..|++++.++.|.-.|..+|+.+.++...... ..+ ..+++. +..++.++.++.+.-.|..+++.+
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~ 140 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVV 140 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEE
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEeccccccee
Confidence 457788888999999999999999887533111 001 123332 446778899999999999998544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.29 E-value=0.074 Score=59.58 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=65.2
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC---------ce-eEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR---------SL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~---------~v-~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
.|++++. ++.|+-+|.++|+.+.++...... .+ ..+.+. ...++.++.|+.+...|..+|+.+.
T Consensus 79 ~vyv~t~----~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W 152 (573)
T d1kb0a2 79 IMYVSAS----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVW 152 (573)
T ss_dssp EEEEECG----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECC----CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeecccccccee
Confidence 4555543 677999999999999987532110 01 112222 3467788899999999999999987
Q ss_pred EEeCCCCCCCcceEEEcC--CCCEEEEEEC------CCcEEEEEcCCCchhh
Q 001159 625 TVDADGGLPASPRLRFNK--EGSLLAVTTS------DNGIKILANSDGVRLL 668 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~ 668 (1135)
..........-..+.-.| .+..+++++. .|.|+.+|..+|+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 204 (573)
T d1kb0a2 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (573)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred cccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCcccee
Confidence 765432211111111111 1334454432 4679999999995443
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00032 Score=62.11 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|++|.+.||||+..|+..+|..|+++.-..+...+.+++++|..+....++.+++....+++ .+.+
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s 119 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHH
Confidence 4454 9999999999999999999999999998877777778899999999999999888887776765 2444
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 120 ~~lLl~~L~~ 129 (149)
T d2nxpa1 120 YQLLKRHLQE 129 (149)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 4566666653
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.21 E-value=0.076 Score=59.58 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=50.6
Q ss_pred CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEEC
Q 001159 905 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 905 g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
|.|.-||+.+++.+.... +..++.+=.++-.|.+++.++.|+.++.+|.++++.+=...+.. +.. -.-+.|.
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~--~~~-----a~P~tY~ 524 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS--GAI-----GYPMTYT 524 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--CCC-----SCCEEEE
T ss_pred ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC--Ccc-----cCCeEEE
Confidence 678889999998876643 22222222223357788889999999999999999764433322 111 1235555
Q ss_pred CCCcE-EEE
Q 001159 985 NDQTH-LLV 992 (1135)
Q Consensus 985 ~dg~~-l~~ 992 (1135)
.||+. +++
T Consensus 525 ~dGkQYvav 533 (596)
T d1w6sa_ 525 HKGTQYVAI 533 (596)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 68864 444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.98 E-value=0.13 Score=55.18 Aligned_cols=247 Identities=10% Similarity=0.046 Sum_probs=129.0
Q ss_pred CCceEEEEeecCCCEEEEEe--CC----eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC----------
Q 001159 841 EESAACIALSKNDSYVMSAS--GG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---------- 904 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d---------- 904 (1135)
.-.+..+++|||++++|.+- +| .|+++|+.+++.+...- .......++|++ |++.|+....|
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence 34455678999999999774 33 59999999998764321 111235689999 77766654432
Q ss_pred ------CcEEEEEccccee--eEEecCc--CCCeEEEEEcCCCCeEEEEc---CCCcEEEE--eCCCCceece---eeee
Q 001159 905 ------SSVQIYNVRVDEV--KTKLKGH--QNRITGLAFSPTLNALVSSG---ADAQLCMW--SIDKWEKLKS---RFIQ 966 (1135)
Q Consensus 905 ------g~v~iwd~~~~~~--~~~l~~h--~~~i~~l~~s~d~~~l~s~~---~D~~i~iw--d~~~~~~~~~---~~~~ 966 (1135)
..|+.|.+.+... ...+... ..-+..+..++|+++++... .+....+| ++........ ....
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 281 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence 2588888776532 2233332 23466788899999876432 23344555 4333211000 0000
Q ss_pred cCCCCCCCCCCceEEEECCCCcEEEEEe----cCeEEEEec-CCce--eeccCCCCCCCCCEEEEEEeeCCCEEEEE-eC
Q 001159 967 APAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS-KLEC--SRSWSPKDALPAPISSAIYSCDGLLVYAG-FC 1038 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~v~vwd~-~~~~--~~~~~~~~~h~~~i~~~~~s~d~~~l~~~-~~ 1038 (1135)
..... ........+.++.+++.+. ++.|...++ +... ...+.+. +...+..-.++..+.+|+.. ..
T Consensus 282 ~~~~~----~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~--~~~~~~~~~~~~~~~~lvl~~~~ 355 (430)
T d1qfma1 282 LIDNF----EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE--HEKDVLEWVACVRSNFLVLCYLH 355 (430)
T ss_dssp EECSS----SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC--CSSCEEEEEEEETTTEEEEEEEE
T ss_pred eeccc----ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecc--cCcceeeeEEEEECCEEEEEEEc
Confidence 00100 1112222233344444442 456666666 2221 1122222 23445555566656666655 35
Q ss_pred CC--eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC---CcEEEEecCCCcc
Q 001159 1039 DG--AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD---GAVHVVEPSDAEL 1105 (1135)
Q Consensus 1039 dg--~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g~v~~W~~~~~~~ 1105 (1135)
++ .|++++..+++......... .....+...+.+..+.++-++- .+++.+|+.+++.
T Consensus 356 ~~~~~l~v~~~~~~~~~~~~~~~~----------~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 356 DVKNTLQLHDLATGALLKIFPLEV----------GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCS----------SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred CCEeEEEEEECCCCcEEEecCCCC----------ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 54 48899999887654332211 1222333334333333332221 4788899988763
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=96.89 E-value=0.00035 Score=60.28 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=62.6
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+++.+.||||+..|+.++|..|+++.-..+. .+.+++++|..+....++.+++....+++ .+.+
T Consensus 23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s 100 (131)
T d2j4ba1 23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 100 (131)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHH
Confidence 4454 9999999999999999999999999998766663 47789999999988888887776655543 3444
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 101 ~~lL~~fL~~ 110 (131)
T d2j4ba1 101 FDLLINFLEE 110 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4566666664
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.52 E-value=0.0011 Score=49.13 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHhcC
Q 001159 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCG 59 (1135)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1135)
.+|+.+-|++||...||.+++.+|++|..+.++ ...-....+.-.|..+.++=++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 578999999999999999999999999998775 4555566888899887665443
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.21 E-value=0.00094 Score=57.72 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|++|.+.||||+..|. .+|..|+++.-..+...+.+++++|..+....++.+++....+++ .+.+
T Consensus 25 EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s 102 (134)
T d2j49a1 25 ELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 102 (134)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHH
Confidence 4544 999999999999999875 679999998877776667888999999998888887776665544 3555
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 103 ~~lLl~fL~~ 112 (134)
T d2j49a1 103 LNLLLYFLNE 112 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5667777765
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.24 E-value=3.2 Score=41.71 Aligned_cols=200 Identities=8% Similarity=0.163 Sum_probs=113.5
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEec-----CCCcEEEEEe--CC--CcEEEEEccc-ceeeE
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP-----QDNNIIAIGM--ED--SSVQIYNVRV-DEVKT 919 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp-----~~~~~lasg~--~d--g~v~iwd~~~-~~~~~ 919 (1135)
|+..+|+... .+-|.+||+. |+.+..+. .++++.+..-. ....-+++++ .+ .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 3455666555 5569999995 77777764 45666655431 0222344554 22 3577887753 22233
Q ss_pred EecCc-------CCCeEEEEE--cCC-CC-eEEEEcCCCcEEEEeCCCCc--eeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 920 KLKGH-------QNRITGLAF--SPT-LN-ALVSSGADAQLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 920 ~l~~h-------~~~i~~l~~--s~d-~~-~l~s~~~D~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
.+... ...+.++|+ ++. |. +++....+|.+..|.+...+ .+....++...-. ..+-.|++...
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde 190 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCC
Confidence 33221 224777887 654 44 45667788999988774322 1222233332221 46789999999
Q ss_pred CcEEEEEe-cCeEEEEecC-----CceeeccCCCCCCCCCEEEEEEe--eCCC-E-EEEEeCCCeEEEEECCC-ceeeee
Q 001159 987 QTHLLVVH-ESQISVYDSK-----LECSRSWSPKDALPAPISSAIYS--CDGL-L-VYAGFCDGAIGVFDAET-LRFRCR 1055 (1135)
Q Consensus 987 g~~l~~~~-d~~v~vwd~~-----~~~~~~~~~~~~h~~~i~~~~~s--~d~~-~-l~~~~~dg~I~vwd~~~-~~~~~~ 1055 (1135)
.+.|.++. +..|..++.. ...+............+..++.- +++. | |++.-.+++..|||..+ .+.+..
T Consensus 191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 99999974 4445444442 11111111112235677877754 3333 4 55555788999999987 466665
Q ss_pred eC
Q 001159 1056 IG 1057 (1135)
Q Consensus 1056 ~~ 1057 (1135)
+.
T Consensus 271 F~ 272 (353)
T d1h6la_ 271 FQ 272 (353)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.18 E-value=2.1 Score=43.10 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=107.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec----cCCccEEEEEE-c-C--CeEEEEeCcCCCce-eEecC
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH----KESIQFIFSTA-I-D--GKIKAWLYDYLGSR-VDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~----~~~~~~l~s~s-~-d--g~i~iwd~~~~~~~-~~~~~ 539 (1135)
+++....++-|++||+ .|+.+..+. .+.++.|..-. .....-++.++ . + .+|.+|.+...... ..+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5565566667999997 588887764 45666665331 22222344444 2 2 36888887643322 22221
Q ss_pred C-------CCcEEEEEE--cCC-CCEEEEEecCCCCCCeEEEEEC---CCC----eEEEEeecccCCceeEEEecCCCCE
Q 001159 540 P-------GNWCTMMAY--SAD-GTRLFSCGTSKEGESHLVEWNE---SEG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 540 ~-------~~~i~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~---~~~----~~~~~~~~~~~~~v~~i~~s~~~~~ 602 (1135)
. ...++.+|+ ++. |...+... ++++.+..|.+ ..+ +.++.+.... .+..|.++...+.
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~---~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~ 193 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVT---GKEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGS 193 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEE---CSSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEE---cCCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCc
Confidence 1 123556665 665 44444443 24677777755 333 4556665543 5788999999999
Q ss_pred EEEEeCCCeEEEEECCC-----CceEEEEeCCCCCCCcceEEEcC--C--CCEEEEEECCCcEEEEEcCCC
Q 001159 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFNK--E--GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~--~--~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+.+-++.-|..++.+. +..+....+..-...+-.+++-. + |-+|++.-.+++..|||..+.
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99998887776666542 22222222211223566666543 3 334444445789999998764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.79 E-value=2.8 Score=42.28 Aligned_cols=160 Identities=6% Similarity=0.022 Sum_probs=89.4
Q ss_pred EEEEEEecCCCeEEEEEEc------------CCCcEEEEEcCCCeee-eee--cCC-----CCCeeEEEeeccCCcc-EE
Q 001159 456 VNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQ-YTF--EGH-----EAPVYSVCPHHKESIQ-FI 514 (1135)
Q Consensus 456 v~~v~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~-~~~--~~h-----~~~v~~i~~~~~~~~~-~l 514 (1135)
..+++..|+|. .+++++ ..|.|.++|+.+.... ..+ .+. .-.-..+.+....+|. +|
T Consensus 37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 34567777775 444433 2488999998765322 121 111 1122344433333444 34
Q ss_pred EEEE---cCCeEEEEeCcCCCceeE----ecC-CCCcEEEEEEcCCCCEEEEEecC-------------CCCCCeEEEEE
Q 001159 515 FSTA---IDGKIKAWLYDYLGSRVD----YDA-PGNWCTMMAYSADGTRLFSCGTS-------------KEGESHLVEWN 573 (1135)
Q Consensus 515 ~s~s---~dg~i~iwd~~~~~~~~~----~~~-~~~~i~~~~~s~~~~~l~~~~~~-------------~~~~~~i~~wd 573 (1135)
+... ...+|.+|++........ +.. .......+++..++.++++-... +...+.+.-||
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 4443 456788888865554332 222 22357888998999888874210 01233455555
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEE-eCCCeEEEEECCCCc
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMN 621 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~ 621 (1135)
....+ ....+.. ..+.++++||+++|+++ +..+.|++|++....
T Consensus 195 ~~~~~--~~~~~l~--~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 195 PNDVR--VVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SSCEE--EEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCceE--EEcCCCC--ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 43322 2222222 46779999999888765 477889999987543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.46 E-value=5.6 Score=41.86 Aligned_cols=103 Identities=21% Similarity=0.276 Sum_probs=62.0
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEe--C------CCCCeEEEEEecC--CCcEEEEEeC------
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM--S------PPPAATFLAFHPQ--DNNIIAIGME------ 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~--~------h~~~v~~l~~sp~--~~~~lasg~~------ 903 (1135)
-...++|+|.|||+++++-. .|+|++++..+++...... . -......|+|+|+ ...+|.....
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 34678999999999998886 7999999988765533221 1 1234678999983 1334433211
Q ss_pred -C----Cc--EEEEEcccce--------eeEEe---cCcCCCeEEEEEcCCCCeEEEEcC
Q 001159 904 -D----SS--VQIYNVRVDE--------VKTKL---KGHQNRITGLAFSPTLNALVSSGA 945 (1135)
Q Consensus 904 -d----g~--v~iwd~~~~~--------~~~~l---~~h~~~i~~l~~s~d~~~l~s~~~ 945 (1135)
+ .. +..+...... .+..+ ..|. ...|+|.|||.++++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence 1 11 3333332211 11111 1243 468999999998888774
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=1.5 Score=44.86 Aligned_cols=184 Identities=10% Similarity=0.038 Sum_probs=108.4
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCc-----------cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTF-----------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 909 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~-----------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~i 909 (1135)
.....-+++++...+++.|+...+.|..+++- ...... .-..|..++|+. + .|+.. .++.+..
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYS 109 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEE
Confidence 45567899999888888888667888775321 111111 123689999986 3 45544 4556777
Q ss_pred EEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcE
Q 001159 910 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989 (1135)
Q Consensus 910 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 989 (1135)
++..+-........-..++.++.++|. .++....++.+.++++..++..... ....+ ......+.+++|++.|+.
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~--~~v~~-~~~~~~~~~v~ws~kgkq 184 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA--QNVTS-FDVTNSQLAVLLKDRSFQ 184 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE--ESEEE-EEECSSEEEEEETTSCEE
T ss_pred EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc--CCcce-EEecCCceEEEEeCCcEE
Confidence 876654333333333556888888775 4666667888999999887632211 00000 000145788899999998
Q ss_pred EEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE
Q 001159 990 LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1036 (1135)
Q Consensus 990 l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~ 1036 (1135)
++++.++...+-. .......+.........|.++.|-.+..++++=
T Consensus 185 ~v~~~g~~~q~k~-~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 185 SFAWRNGEMEKQF-EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEETTEEEEEE-EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEeCCCceeecc-CCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 8886544433321 111111121111224568899998877776643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.79 E-value=5.5 Score=39.97 Aligned_cols=189 Identities=12% Similarity=0.048 Sum_probs=103.1
Q ss_pred EEEEEcCCCCeEEEEeC------------CCeEEEEEeCCCCceeeeeEeeccc-----CCEEEEEE--ecCCCeEEEEE
Q 001159 412 NRCVWGPDGLMLGVAFS------------KHIVHLYTYNPTGELRQHLEIDAHV-----GGVNDIAF--AHPNKQLCIVT 472 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~------------dg~i~iwd~~~~~~~~~~~~l~~h~-----~~v~~v~~--s~d~~~~~l~s 472 (1135)
-.++..|||..+++++. .|.|.++|+.+.........+.+.. -....+.. .++|.. +|+.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~v 116 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLLV 116 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEEE
Confidence 35778899988777642 4899999998765433222222211 12234443 456664 3444
Q ss_pred E---cCCCcEEEEEcCCCee--e--eeecC-CCCCeeEEEeeccCCccEEEEEEc---------------CCeEEEEeCc
Q 001159 473 C---GDDKMIKVWDVVAGRK--Q--YTFEG-HEAPVYSVCPHHKESIQFIFSTAI---------------DGKIKAWLYD 529 (1135)
Q Consensus 473 ~---~~d~~i~iwd~~~~~~--~--~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~---------------dg~i~iwd~~ 529 (1135)
. ....+|.+|++..... . .++.. .....+.+++..+ +.+++|-.. -++..+|..+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~--g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP--EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET--TEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecC--CCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 3 3456888888764332 1 12221 2234677777654 366666311 1233444444
Q ss_pred CCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe-ecccCCceeEEEecCCCCEEEEEe
Q 001159 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 530 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~~~~ 607 (1135)
........ ..-...+.++++||+++|+++.. ..+.|+.|++.....+... ...-......+.+.+++..+.+++
T Consensus 195 ~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 195 PNDVRVVA-EGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SSCEEEEE-EEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CCceEEEc-CCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 44433322 22346789999999999988764 3677999888643322211 111222456688876443444443
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.42 E-value=3.6 Score=36.91 Aligned_cols=151 Identities=10% Similarity=0.131 Sum_probs=84.1
Q ss_pred EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee--eecCCCCCeeEE--------EeeccCCccEEEEEEc-CCeEE
Q 001159 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSV--------CPHHKESIQFIFSTAI-DGKIK 524 (1135)
Q Consensus 456 v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~i--------~~~~~~~~~~l~s~s~-dg~i~ 524 (1135)
+.-+...-|++. ...+|+......+|-++.|+... .+.+ -+-|+.+ .+...+. .-++++.. .|.++
T Consensus 104 vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~~g~~-~sfF~adl~SG~lr 180 (313)
T d2hu7a1 104 MRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGR-VSLFTSNLSSGGLR 180 (313)
T ss_dssp BEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTE-EEEEEEETTTEEEE
T ss_pred EEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeeecCCc-ceEEEEecccCCEE
Confidence 444444445665 56677777778888888876432 2221 2233333 2221111 22333333 55555
Q ss_pred EEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE-ee-----cccCCceeEEEecC
Q 001159 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YS-----GFRKRSLGVVQFDT 598 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~-----~~~~~~v~~i~~s~ 598 (1135)
++ +...+.++...+.+..+. ++.... -++....-+|+++++.-+. +. ......|.-+-+.|
T Consensus 181 i~-----------tpkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P 247 (313)
T d2hu7a1 181 VF-----------DSGEGSFSSASISPGMKV-TAGLET-AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 247 (313)
T ss_dssp EE-----------CCSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred Ee-----------cCCCCcccceeEccCcee-eeccCC-CCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence 55 444556666667776655 444321 2233344668887765432 11 11222456677999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 599 TRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+++.++.+-.||.-+++. +|+.+.
T Consensus 248 dd~L~iiakrdG~s~lF~--nGk~in 271 (313)
T d2hu7a1 248 DGRLAVVARREGRSAVFI--DGERVE 271 (313)
T ss_dssp TSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred CCcEEEEEecCCchheee--cceEec
Confidence 999989999999999885 355443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.18 E-value=1.3 Score=47.15 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC---CcEEEEE--ec----
Q 001159 925 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---QTHLLVV--HE---- 995 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~l~~~--~d---- 995 (1135)
-...++|+|.|||++|++--..|.|++++..+++.....-+...............++|+|+ ..++..+ ..
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 45678999999999998876689999999887764332222111111112256788999986 3444442 10
Q ss_pred ------Ce--EEEEecC--Cce-------eeccCCCCCCCCCEEEEEEeeCCCEEEEEeC
Q 001159 996 ------SQ--ISVYDSK--LEC-------SRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1038 (1135)
Q Consensus 996 ------~~--v~vwd~~--~~~-------~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~ 1038 (1135)
+. +..+..+ ... +........| ....++|.|||.++++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccc--cccceeEcCCCCEEEEecC
Confidence 12 2333331 111 1111222223 3578999999997776553
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=2 Score=42.21 Aligned_cols=217 Identities=13% Similarity=0.070 Sum_probs=100.1
Q ss_pred CeEEEEECCCccEEE--EEeCCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEEcccceeeE--EecCcCCCe
Q 001159 862 GKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED---------SSVQIYNVRVDEVKT--KLKGHQNRI 928 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~~lasg~~d---------g~v~iwd~~~~~~~~--~l~~h~~~i 928 (1135)
..+.+||+++++-.. .+...... .+++.. ++++++.|+.. ..+.+||..+.+... .+..-...-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCccce-eEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 358899998864322 22211111 122222 56677776631 357788877654332 111111111
Q ss_pred EEEEEcCCCCeEEEEcCCCc-----EEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-e-----cCe
Q 001159 929 TGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H-----ESQ 997 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~-----d~~ 997 (1135)
.++. .+++.++.++.++. +..++..+..-......... ..-..+... ++..++.+ . ...
T Consensus 96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~-~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-------RIGVGVAVL-NRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEE-TTEEEEECCBCSSCBCCC
T ss_pred eccc--cceeeEEecceecccccceeeeeccccCccccccccccc-------cccceeeee-eecceEecCcccccccce
Confidence 2222 26666666654443 44466665442111111000 011122222 34444443 2 245
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeeeeCCceeccccccCCCCc
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAH 1072 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
+..||.............. ... ...+...++++++.|+.+ .....+|..+.+....-.. +. ....
T Consensus 166 ~~~~d~~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~----p~----~r~~ 235 (288)
T d1zgka1 166 AECYYPERNEWRMITAMNT-IRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KH----RRSA 235 (288)
T ss_dssp EEEEETTTTEEEECCCCSS-CCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC----SS----CCBS
T ss_pred EEEeecccccccccccccc-ccc-cccccceeeeEEEecCccccccccceeeeeecceeeecccCc----cC----cccc
Confidence 7888884333333222211 111 112223456677776655 3467788877654432111 11 1111
Q ss_pred cEEEEecCCCCCEEEEEecCCc-----EEEEecCCCc
Q 001159 1073 PLVIAPHPSEPNQIALGMSDGA-----VHVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~~~~~~~~l~sg~~dg~-----v~~W~~~~~~ 1104 (1135)
..++.. ++++++.|+.++. |.+||+.+.+
T Consensus 236 ~~~~~~---~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 236 LGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEEEEE---CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 122222 5688888887653 7788888754
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.27 E-value=5.2 Score=40.58 Aligned_cols=137 Identities=9% Similarity=0.020 Sum_probs=85.6
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 921 (1135)
..|..++|+.| .++...++.+..++..+.........-...+..+.+.| ..++....+|.+.++++..++.....
T Consensus 87 p~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~ 161 (381)
T d1xipa_ 87 PDVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLA 161 (381)
T ss_dssp TTEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCcccccc
Confidence 35788999755 57777788899998877655555554556788888877 35667778999999999887533221
Q ss_pred cC-----cCCCeEEEEEcCCCCeEEEEcCCCcEEE-EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 922 KG-----HQNRITGLAFSPTLNALVSSGADAQLCM-WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 922 ~~-----h~~~i~~l~~s~d~~~l~s~~~D~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
.+ -.+.+.+++|++.|+.++++..++ ..+ -++.... .+..+... ...|.++.|-....++++
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~-----~~~~p~~~---~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPS-----ELEELPVE---EYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCH-----HHHTSCTT---TSEEEEEEESSSSEEEEE
T ss_pred CCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCcc-----ccCCCcCC---CcceeEEEEecCceEEEE
Confidence 11 135578888888888777764332 111 1111111 11111111 145778888877777776
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.66 E-value=6.3 Score=38.21 Aligned_cols=186 Identities=15% Similarity=0.070 Sum_probs=85.3
Q ss_pred CCCEEEEEe-C---------CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCCCc-----EEEEEcccc
Q 001159 852 NDSYVMSAS-G---------GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMEDSS-----VQIYNVRVD 915 (1135)
Q Consensus 852 dg~~la~~~-d---------g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~dg~-----v~iwd~~~~ 915 (1135)
+++.++.|+ . ..+.+||..+.+....-......- ..++. - ++++++.|+.++. ...++..+.
T Consensus 50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~-~-~~~i~~~gg~~~~~~~~~~~~~~~~~~ 127 (288)
T d1zgka1 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-I-DGHIYAVGGSHGCIHHNSVERYEPERD 127 (288)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-E-TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc-c-ceeeEEecceecccccceeeeeccccC
Confidence 566666654 1 347888987654432211111111 11222 2 5666666655443 444666555
Q ss_pred eeeEEe--cCcCCCeEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 916 EVKTKL--KGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 916 ~~~~~l--~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.-...- .........+. .++..++.++.+ ..+..||..+.+.......... .....++ ..+++
T Consensus 128 ~~~~~~~~~~~r~~~~~~~--~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~ 197 (288)
T d1zgka1 128 EWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-------RSGAGVC-VLHNC 197 (288)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEE-EETTE
T ss_pred ccccccccccccccceeee--eeecceEecCcccccccceEEEeeccccccccccccccc-------ccccccc-ceeee
Confidence 422211 11111111222 244555555543 3477888877553221111111 1111222 23344
Q ss_pred EEEE-Eec-----CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCe-----EEEEECCCce
Q 001159 989 HLLV-VHE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-----IGVFDAETLR 1051 (1135)
Q Consensus 989 ~l~~-~~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~-----I~vwd~~~~~ 1051 (1135)
.++. +.+ .....||............. .......+...++++++.|+.++. |.+||+.+.+
T Consensus 198 i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMK--HRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEecCccccccccceeeeeecceeeecccCcc--CcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 4444 322 34677787433333332211 112222222357888888876543 7889999865
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=84.41 E-value=18 Score=34.52 Aligned_cols=221 Identities=12% Similarity=0.103 Sum_probs=102.4
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..|..++-- ..+.+|. . ||.|.-|-.....++... ......|..|+-- ....+ +
T Consensus 26 ~~i~~va~G--~~h~~al-~-dG~v~~wG~N~~GQlG~~-------------------~~~~~~v~~v~~G--~~~~~-a 79 (273)
T d1jtdb_ 26 SGVDAIAGG--YFHGLAL-K-GGKVLGWGANLNGQLTMP-------------------AATQSGVDAIAAG--NYHSL-A 79 (273)
T ss_dssp SSEEEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTSCC-------------------GGGGSCCCEEEEC--SSEEE-E
T ss_pred CCcEEEEcc--CCEEEEE-E-CCEEEEEeCCCCCceeee-------------------ecccccceEEecC--CCcee-e
Confidence 456666552 2234443 4 899999977655443210 0112234444432 22222 2
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
-.|+.+..|........... ......+..++-... ..+.. .|+.+..|.-...............|..++-.
T Consensus 80 l~dg~v~~wG~~~~gq~~~~---~~~~~~~~~i~~~~~----~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~ 151 (273)
T d1jtdb_ 80 LKDGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAW----ASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG 151 (273)
T ss_dssp EETTEEEEEECCTTSTTCCC---GGGGSSCCEEEEETT----EEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC
T ss_pred eeeeeeeccCCCcceeeccc---cccccceeEEeeecc----ccccc-ccccceecccCCCCceeeeccCCceEEEEecc
Confidence 24889999986543322110 111223444444332 12222 48889999744322221111122345544421
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeEEEEeec
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~ 585 (1135)
........++.+..|-................|..++.... +.+.-. ++.|+.|=... +++-....
T Consensus 152 -----~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-----dG~v~~WG~n~~Gql~~~~~- 218 (273)
T d1jtdb_ 152 -----VYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-----DGKVIAWGDNRYKQTTVPTE- 218 (273)
T ss_dssp -----SSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-----TTEEEEEECCTTSTTCCCGG-
T ss_pred -----ceeeeeecccceeEeecccCCcccccccccCCccceeccce--eeEEEe-----cCcEEEcCCCCCCccCCCcc-
Confidence 12233345788999966544433222223445666655432 222221 56788885432 22111111
Q ss_pred ccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
... .|..|+.... ..++. .||.|+.|-..
T Consensus 219 ~~~-~v~~I~~G~~-~~~~l--~~g~v~~WG~~ 247 (273)
T d1jtdb_ 219 ALS-GVSAIASGEW-YSLAL--KNGKVIAWGSS 247 (273)
T ss_dssp GGS-SCCEEEECSS-CEEEE--ETTEEEEESTT
T ss_pred CCC-CcEEEEeCcc-eEEEE--ECCEEEEECCC
Confidence 111 4556665433 23333 37999999543
|