Citrus Sinensis ID: 001167

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130----
MAEEMPEEAKSNPSLFPLFPSISEQQISPSINNQNAGQWLCNRSFTADLAVVDDAVSAAASAYKDESDDNEEKDDQPRPSLSPSYDLLEEESDEERQRKKKDKKKKRKRRRSKERGDQFDSFVSAKSKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQDA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccccccccccccccccccEEcccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcccHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHcccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccHccccccccHcccccccccHHccccccccccccccEEEEcccccHHEEEccccccccccEEEccccEEcccccEEEEEEccccEEEccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccHHccccccccccccccccccccccccccccccccccHccccccccHccccHcHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccHHHcEccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEEcHHHHHHccc
maeempeeaksnpslfplfpsiseqqispsinnqnagqwlcnrsftadLAVVDDAVSAAASaykdesddneekddqprpslspsydlleeeSDEERQRKKKDKKKKRkrrrskergdqfdsfvsakskdyyfdshgdrdnlvygrlyrmdvprykaydpeklsrfhsegvvrlnksgsvldgdydvnemdskvksggrywssKYAALERHKNLKHVClilpkksavseygedfipllgtemsieghhdnsileesWEDEVLRKTKEFNkltrehpydvkgwlefadfqdvvgskeskrgVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVnqtvkpasldpAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFslfcpsllltEQSKHRLFehfwngdgarvgeegalGWSAWLEKEEENRQRIVKEEtshdnekggwtgwsepiskskgnstnseelgddnvsAEEAEIEKEVMKQEDDTENLLKLLGIDidvganaevkdtstwtrwaeeessrdcdhwmpvhseagiplsdatedgeaDEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFfggkvsqgictnssswnenlltletlpdflseslgkidddpaktqstsssfSLDILLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTkmnlsgcsvtpcqplakgllksdrqdVLLCGVYARREAFFGNIDHARRVFDMALSSieglplvlksnapLLYLWYAEVElssnsgsdpdsslRAIHVLSclgsgstytpfkcqpsnVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVlperrscshqLEFLFNFNVRMLQRHHKQLSLSTVWETTlhglqiypyspkLFNTLVEISNlyttpnklRWIFDlychkkpsLVVSLFALAFEmsrkgpphrIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHacpwskrlwLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQDA
maeempeeaksnpslfpLFPSISEQQISPSINNQNAGQWLCNRSFTADLAVVDDAVSAAAsaykdesddneekddqprpslspsydlleeesdeerqrkkkdkkkkrkrrrskergdqfdsfvsakskdyyfdshgdrdnlvygrLYRMDVPRYKAYdpeklsrfhsegvvrlnksgsvldgdydvnemdskvksggryWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEfnkltrehpydvkgwlefadfqdvvgskeskrgvrlqILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKEEENRQRIVKeetshdnekggwtgwsepiskskgnstnseelgddnVSAEEAEIEKEVMKQEDDTENLLKLLGididvganaevkdtstwtrwaeeessrdcdhwmPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKIdddpaktqstsssfsldiLLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAkelsdlqevmrdkelnlrtDIYEILLQDA
MAEEMPEEAKSNPSLFPLFpsiseqqispsinnqnAGQWLCNRSFTadlavvddavsaaasaYkdesddneekddQPRPSLSPSYDLLeeesdeerqrkkkdkkkkrkrrrskerGDQFDSFVSAKSKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYlfslsseearlsllYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYvleeaalvaeelsvTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELssnsgsdpdssLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPfaarriffraiHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQDA
***********************************AGQWLCNRSFTADLAVVDDAV************************************************************************DYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDV******VKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWL********************************************************************NLLKLLGIDIDVGANAEVKDTSTWTRWAE******CDHWMPV*******************QLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFL************************ILLG****ISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVEL***********LRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILL***
********************************************************************************************************************************DYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNK****************************************************************************************************YDVKGWLEFADFQD******************KISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQF*****************QLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKE*********************TGWSEPIS****************VSAEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAG**********EADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKI******TQSTSSSFSLDILLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSI********SNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQD*
************PSLFPLFPSISEQQISPSINNQNAGQWLCNRSFTADLAVVDDAVSA**********************LSPSYD********************************FDSFVSAKSKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKEEENRQRIVK***********WTGWSEPISK*****************AEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTW***********CDHWMPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKIDD**********SFSLDILLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVEL*********SSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQDA
********************************************FTADLAV***************************************************************************SKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDV**************************LKHVC*************************************SWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQ*************DPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEK******************************************************************NLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHS***********DGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQDA
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MAEEMPEEAKSNPSLFPLFPSISEQQISPSINNQNAGQWLCNRSFTADLAVVDDAVSAAASAYKDESDDNEEKDDQPRPSLSPSxxxxxxxxxxxxxxxxxxxxxKRKRRRSKERGDQFDSFVSAKSKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISRRTKMMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1134 2.2.26 [Sep-21-2011]
Q9H7Z31164 Protein NRDE2 homolog OS= yes no 0.828 0.807 0.250 2e-68
Q80XC61172 Protein NRDE2 homolog OS= yes no 0.679 0.657 0.276 6e-68
O42975972 Protein NRDE2 homolog OS= yes no 0.318 0.371 0.241 6e-14
Q54QP01320 Protein NRDE2 homolog OS= yes no 0.089 0.076 0.333 5e-10
>sp|Q9H7Z3|NRDE2_HUMAN Protein NRDE2 homolog OS=Homo sapiens GN=NRDE2 PE=1 SV=3 Back     alignment and function desciption
 Score =  261 bits (668), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 295/1176 (25%), Positives = 481/1176 (40%), Gaps = 236/1176 (20%)

Query: 58   AAASAYKDESDDNEEKDDQPRPSLSPSYDLLEEESDEERQRKKKDKKKKRKRRRSKERGD 117
              +S+ + E+D + EKD +P   +  S              KK+ ++  +    + + G 
Sbjct: 103  GPSSSSRSETDTDSEKD-KPSRGVGGS--------------KKESEEPNQGNNAAADTGH 147

Query: 118  QF---DSFVSAKSKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLN 174
            +F   +   +   + +  D   D  N  Y  LYR D+ RYK            +  + +N
Sbjct: 148  RFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKR---------KGDSCLGIN 198

Query: 175  KSGSVLDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFI 234
                 +  +    E     K   RY++ K   L    N+  V  I  K    S     FI
Sbjct: 199  PKKQCISWEGTSTEKKHSRKQVERYFTKKSVGL---MNIDGVA-ISSKTEPPSSEPISFI 254

Query: 235  PL--------LGTEMSIEGHHDNSIL------------------EESWEDEVLR-KTKEF 267
            P+        + T ++  G +D S                    +   E   L+ K +EF
Sbjct: 255  PVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEF 314

Query: 268  NKLTREHPYDVKGWLEFADFQDVV-----------GSKES-KRGVRLQILEKKISILEKA 315
            N+  RE+P D + W+ F  FQD V           G +E  KR ++L ILEKK++ILE+A
Sbjct: 315  NRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKL-ILEKKLAILERA 373

Query: 316  VELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFK 375
            +E N  + +L L+ +K          L++ W+K++  H  +  LW+++L   Q +FS F 
Sbjct: 374  IESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFS 433

Query: 376  VSELRKMYAHAIQALSAACIKQFRQVNQTVKPASL--DPAIIQLELGLVDIFLSLCRLEW 433
            +S++  +Y   +  LSA            VK  S+   PA+   E  +  +FL  C    
Sbjct: 434  ISKIHSLYGKCLSTLSA------------VKDGSILSHPALPGTEEAMFALFLQQCHFLR 481

Query: 434  QAGYQELATALFQAEIEFSLFCPSLL--LTEQSKHRLFEHFWNGDGARVGEEGALGWSAW 491
            QAG+ E A +LFQA ++F+ F P  +  L  + +   FE FW+    R GE+GA GW AW
Sbjct: 482  QAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAW 541

Query: 492  LEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKE 551
            +                H  E+GGW                        ++ +E + E E
Sbjct: 542  M----------------HQQERGGWV----------------------VINPDEDDDEPE 563

Query: 552  VMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLS 611
               QE   + L +                   W  W   E SRD  HW P   +     +
Sbjct: 564  EDDQEIKDKTLPR-------------------WQIWLAAERSRDQRHWRPWRPDKTKKQT 604

Query: 612  DATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSW 671
            +  ED E  E   + ++++D+ + L  LSS + +  L+  F+ F G  V  G    +S  
Sbjct: 605  E--EDCEDPE---RQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLG--VPSGFTPPASCL 657

Query: 672  NENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISRRTKMM------ 725
                        +L+     I D+    +   + F  + L   ++ + R  ++       
Sbjct: 658  ------------YLAMDENSIFDNGLYDEKPLTFF--NPLFSGASCVGRMDRLGYPRWTR 703

Query: 726  -------EFLRNAILLCLTVFPR--------NYVLEEAALVAEELSVTKMNLSGCSVTPC 770
                   EF+RN   L + +F          +++  E A V   L              C
Sbjct: 704  GQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNC 763

Query: 771  QPLAKGLLK--SDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPL 828
            + LAK LLK   +  +  L   YA  E   GN + AR+VFD AL  + G   +  S+   
Sbjct: 764  KKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTAL-GMAGSRELKDSDLCE 822

Query: 829  LYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERI 888
            L L YAE+E+  +      ++ RA+H+L+ L   S Y P+  Q   V +L+A + Y   +
Sbjct: 823  LSLLYAELEVELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHAL 882

Query: 889  KAV--RSAWLRGAVSDQSIALICSAA---LFEELTNGWTAGIEVLHQAFAM----VLPE- 938
            +     S     A +D    LI  A    LF+ LT G  A +++  Q FA     V PE 
Sbjct: 883  QDCLGDSCVSNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEG 942

Query: 939  --------RRSCSHQLEFLFNFNVRMLQRHHK--QLSLSTVWETTLHGLQIYPYSPKLFN 988
                     +S +  LE +   +  +L+ H K     L+ + E     L++YP +  L+ 
Sbjct: 943  SGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWR 1002

Query: 989  TLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRK----------------- 1031
            + V+I N   + +K R  FD        L   LFA+  E  RK                 
Sbjct: 1003 SYVQIQNKSHSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHAT 1062

Query: 1032 ----GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087
                G  HRI+ LFE A+ +D+     +LWR Y+ + V +  N   ++ +F++A+  CPW
Sbjct: 1063 IPETGLMHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLG-NKERSKGVFYKALQNCPW 1121

Query: 1088 SKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLR 1123
            +K L+LD            E+ ++ ++M +KEL +R
Sbjct: 1122 AKVLYLDAVEYF-----PDEMQEILDLMTEKELRVR 1152

Homo sapiens (taxid: 9606)
>sp|Q80XC6|NRDE2_MOUSE Protein NRDE2 homolog OS=Mus musculus GN=Nrde2 PE=2 SV=3 Back     alignment and function description
>sp|O42975|NRDE2_SCHPO Protein NRDE2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.05 PE=1 SV=1 Back     alignment and function description
>sp|Q54QP0|NRDE2_DICDI Protein NRDE2 homolog OS=Dictyostelium discoideum GN=nrde2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1134
2241259181188 predicted protein [Populus trichocarpa] 0.989 0.944 0.618 0.0
2977427961164 unnamed protein product [Vitis vinifera] 0.984 0.958 0.624 0.0
2254709991172 PREDICTED: UPF0614 protein C14orf102-lik 0.984 0.952 0.620 0.0
2555735131139 conserved hypothetical protein [Ricinus 0.961 0.956 0.624 0.0
3565294551168 PREDICTED: UPF0614 protein C14orf102-lik 0.992 0.963 0.610 0.0
3565618551172 PREDICTED: UPF0614 protein C14orf102-lik 0.992 0.960 0.610 0.0
4495232591163 PREDICTED: UPF0614 protein C14orf102-lik 0.979 0.955 0.596 0.0
4494397191132 PREDICTED: UPF0614 protein C14orf102-lik 0.968 0.969 0.597 0.0
3574688171195 hypothetical protein MTR_4g016590 [Medic 0.985 0.934 0.586 0.0
2978346881153 hypothetical protein ARALYDRAFT_479255 [ 0.974 0.958 0.564 0.0
>gi|224125918|ref|XP_002329749.1| predicted protein [Populus trichocarpa] gi|222870657|gb|EEF07788.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1429 bits (3700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/1189 (61%), Positives = 901/1189 (75%), Gaps = 67/1189 (5%)

Query: 3    EEMPEEAKSNPSLFPLFPS-------ISEQQISPSINN----QNAGQWLCNRSFTADLAV 51
            E+  E+  S+PSLFPLF +       I++QQ +  IN+         WL N SFT DL++
Sbjct: 5    EKEAEKTSSSPSLFPLFAAAVAASSSITQQQTNTPINDTVPPPPPPAWLYNTSFTTDLSI 64

Query: 52   VDDAVSAAASAYKDESD---DNEEKDDQ-PRPSLSPSYDLLEEESDEERQRKKKDKKKKR 107
            V+DAVS+   +   +SD     E+KDD+        SY LL+E  +EE+ R+ K  +   
Sbjct: 65   VNDAVSSLHPSQHSDSDLEEQEEDKDDRVSNQGKDRSYQLLQE-PEEEKTREAKYSRSDS 123

Query: 108  KRR-----------------------RSKERGDQFDSFVS----------AKSKDYYFDS 134
                                      R +E    F S  S            +KDYYFD+
Sbjct: 124  DYSDSGRERKKTKKRRHSKKKKRDRSRDEEDARDFGSRKSNVRVWAGSDTKTTKDYYFDT 183

Query: 135  HGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDVNEMDSKVK 194
            HGDRDNLVYG LYRMDVPRYK Y+  K       G+ RLNK G   D D D++ +D+++K
Sbjct: 184  HGDRDNLVYGTLYRMDVPRYKPYNSTK---HDFRGLYRLNKRGPGFDRDGDIDALDTQLK 240

Query: 195  SGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMSIEG-HHDNSIL- 252
            SGGRYWSSKYAA+ERHKNLK +  +L +K       ++FIPL  TEMS +G  H  S+L 
Sbjct: 241  SGGRYWSSKYAAVERHKNLKRL-RVLARKQPRVVVSDEFIPLSDTEMSHDGVDHPGSVLK 299

Query: 253  -----EESWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEK 307
                 EESWEDEVLRKT+EFNKLTREHP+D K WL+FA+FQD V S + ++G RLQ LEK
Sbjct: 300  DCLVVEESWEDEVLRKTREFNKLTREHPHDEKVWLDFAEFQDKVASMQPQKGARLQTLEK 359

Query: 308  KISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVV 367
            KIS+LEKA ELNPDNEELLL LMKAYQSRD +D+LI RWEK+LM HSG++KLW+E+LRVV
Sbjct: 360  KISVLEKATELNPDNEELLLCLMKAYQSRDSSDMLIGRWEKVLMHHSGNHKLWKEYLRVV 419

Query: 368  QGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLS 427
            QGEFSRFKVS++RKMYAHAIQA+S+AC +QFRQV Q  KP+SLDPAI+Q ELGLVDIFLS
Sbjct: 420  QGEFSRFKVSDMRKMYAHAIQAVSSACSRQFRQVYQNEKPSSLDPAIVQQELGLVDIFLS 479

Query: 428  LCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFWNGDGARVGEEGALG 487
            LCRLEWQAG+QELATALFQAEIEF++FCPSLLLTE SK RLFEHFWN D  RVGEEGA+G
Sbjct: 480  LCRLEWQAGHQELATALFQAEIEFTVFCPSLLLTENSKLRLFEHFWNSDCPRVGEEGAVG 539

Query: 488  WSAWLEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEE-- 545
            WS WLEKEEENRQRI+KEE SHD ++GGWTGWSE +SK +  + N E +  ++V+A+E  
Sbjct: 540  WSTWLEKEEENRQRILKEEASHDEDRGGWTGWSELLSKHEETAKNQENVVHNDVTADEFL 599

Query: 546  AEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSE 605
             E E E +KQEDDTE LLK LGID+D   ++EVKD+STW RW++EES RDC+ WMPVH +
Sbjct: 600  EESENEDIKQEDDTEALLKQLGIDVDAEPSSEVKDSSTWARWSKEESLRDCNQWMPVHGK 659

Query: 606  AG-IPLSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGI 664
             G I  S  T DGEADE  L+ +++EDV EYLFSL+S+EARLSL+ QFI FFGG +SQ I
Sbjct: 660  FGRISPSSGTPDGEADEHFLRAVLFEDVIEYLFSLNSQEARLSLVSQFIEFFGGDLSQWI 719

Query: 665  CTNSSSWNENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISRRTKM 724
            CTNSSSW + LL++E LPD +S++L  + D   +++ +SSS S D+L G +++ S+RT  
Sbjct: 720  CTNSSSWKDKLLSIEVLPDPISKNLRSLHDILDRSEGSSSSNSFDLLSGITSNSSKRTDA 779

Query: 725  MEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQD 784
            M+FLRNA+LLCLT FPRN++LEEAALVAE+ SVTKM+    S TPC+ LAK LLK+DRQD
Sbjct: 780  MKFLRNAVLLCLTAFPRNHILEEAALVAEDFSVTKMD----STTPCRVLAKSLLKNDRQD 835

Query: 785  VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844
            VLLCGVYARREA FGNI +ARRVFD+AL+S+EGLP  L+SNAPLLY WYAE EL+++SG+
Sbjct: 836  VLLCGVYARREAVFGNIGYARRVFDLALTSVEGLPPDLRSNAPLLYFWYAETELANSSGN 895

Query: 845  DPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQS 904
            + +S  RA+H+LSCLG+G TY PF+ +PS++Q+LRAHQG+ ER+K VRSAW+RG V DQS
Sbjct: 896  NQESPSRALHILSCLGNGVTYKPFESKPSSLQLLRAHQGFKERLKIVRSAWVRGVVDDQS 955

Query: 905  IALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQL 964
            +AL CSAALFEELT GW AGI VL +AF MVLP+RR  S+QLEFLFN++VRML R+HKQ 
Sbjct: 956  LALTCSAALFEELTTGWAAGIAVLDEAFTMVLPDRRCHSYQLEFLFNYHVRMLLRYHKQS 1015

Query: 965  SLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFAL 1024
            SLS VW++ L GLQIYP SP+LF TL+EIS+LYTTPNK+R + D + HKKPS+++ LFAL
Sbjct: 1016 SLSKVWDSILKGLQIYPSSPELFKTLLEISHLYTTPNKVRSMLDDFFHKKPSVILWLFAL 1075

Query: 1025 AFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA 1084
            +FEMSR    HRI GLFERAL N+ +  SV+LWR YIAYE+ IA NP AA+R FFRAIHA
Sbjct: 1076 SFEMSRGSSQHRIHGLFERALENERLSNSVILWRLYIAYEIDIACNPSAAKRAFFRAIHA 1135

Query: 1085 CPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEILLQD 1133
            CPWSK+LWLDGFLKLNSILT KELSDLQ+VMRDKELNLRTDIYEILLQD
Sbjct: 1136 CPWSKKLWLDGFLKLNSILTVKELSDLQDVMRDKELNLRTDIYEILLQD 1184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742796|emb|CBI35476.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225470999|ref|XP_002266638.1| PREDICTED: UPF0614 protein C14orf102-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573513|ref|XP_002527681.1| conserved hypothetical protein [Ricinus communis] gi|223532912|gb|EEF34680.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356529455|ref|XP_003533307.1| PREDICTED: UPF0614 protein C14orf102-like [Glycine max] Back     alignment and taxonomy information
>gi|356561855|ref|XP_003549192.1| PREDICTED: UPF0614 protein C14orf102-like [Glycine max] Back     alignment and taxonomy information
>gi|449523259|ref|XP_004168641.1| PREDICTED: UPF0614 protein C14orf102-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439719|ref|XP_004137633.1| PREDICTED: UPF0614 protein C14orf102-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357468817|ref|XP_003604693.1| hypothetical protein MTR_4g016590 [Medicago truncatula] gi|355505748|gb|AES86890.1| hypothetical protein MTR_4g016590 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297834688|ref|XP_002885226.1| hypothetical protein ARALYDRAFT_479255 [Arabidopsis lyrata subsp. lyrata] gi|297331066|gb|EFH61485.1| hypothetical protein ARALYDRAFT_479255 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1134
TAIR|locus:20897691149 AT3G17740 "AT3G17740" [Arabido 0.888 0.876 0.552 1.2e-296
MGI|MGI:26709691172 Nrde2 "nrde-2 necessary for RN 0.206 0.199 0.321 1.4e-53
UNIPROTKB|Q9H7Z31164 NRDE2 "Protein NRDE2 homolog" 0.212 0.207 0.324 2.4e-51
RGD|15650821170 Nrde2 "NRDE-2, necessary for R 0.210 0.204 0.318 3.9e-51
UNIPROTKB|F1N5431136 C10H14orf102 "Uncharacterized 0.201 0.201 0.329 1.9e-50
DICTYBASE|DDB_G02837191320 DDB_G0283719 "DUF1740 family p 0.408 0.350 0.220 7.5e-28
POMBASE|SPBC20F10.05972 nrl1 "NRDE-2 family protein (p 0.240 0.280 0.253 3.7e-12
ASPGD|ASPL00000328111160 AN5456 [Emericella nidulans (t 0.207 0.202 0.268 4.6e-12
FB|FBgn0030625984 CG5877 [Drosophila melanogaste 0.114 0.132 0.248 2.3e-05
TAIR|locus:2089769 AT3G17740 "AT3G17740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2830 (1001.3 bits), Expect = 1.2e-296, Sum P(2) = 1.2e-296
 Identities = 565/1022 (55%), Positives = 710/1022 (69%)

Query:   120 DSFVSAKSKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLNKSGSV 179
             D + S   KDYY D+  D DNL YG +YRM+VPRYK  + +++    S      N+  S+
Sbjct:   130 DEYYSKPVKDYYLDTRPDPDNLAYGSIYRMNVPRYKLDNSQRVPGSGSLRFYLRNRRSSM 189

Query:   180 LDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGT 239
             LD + D++ ++ + KS  RYW +K+AA+ER+KN K + L    ++  S + ++FIPL   
Sbjct:   190 LDTEIDIDSLEGRAKSDTRYWYAKHAAMERNKNFKRIRLSAASEAVDSSF-DNFIPL-EE 247

Query:   240 EMSIEGHHDNSILEE------SWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGS 293
             ++++    +  +L +      SWEDEVL KT+EFN++TRE P+D K WL FADFQD V S
Sbjct:   248 DVTVPESDEEDVLSKDSMIGASWEDEVLNKTREFNRVTRERPHDAKAWLAFADFQDKVSS 307

Query:   294 KESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQH 353
              +S++GVRLQ LEKKISILEKA ELNPD+EELLL+L+KAY+SRD  DVLI RWEK LMQ+
Sbjct:   308 MQSQKGVRLQTLEKKISILEKAFELNPDSEELLLALLKAYRSRDNADVLISRWEKALMQN 367

Query:   354 SGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPA 413
             S SYKLWREFL VVQGEFSRFKVSE+R++Y++AIQALS+AC K+ RQV+ T +P  LD A
Sbjct:   368 SASYKLWREFLCVVQGEFSRFKVSEVRRLYSYAIQALSSACSKRHRQVDTTSEP--LDSA 425

Query:   414 IIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKHRLFEHFW 473
              IQ EL LVD+ +SLCR EWQAGYQELATAL QAE+EFS+F PSLLLTEQSK RLFEHFW
Sbjct:   426 AIQQELVLVDMLVSLCRFEWQAGYQELATALLQAEVEFSIFSPSLLLTEQSKLRLFEHFW 485

Query:   474 NGDGARVGEEGALGWSAWLEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNS 533
             + +GARVGEEGA GW  WLEKEEENRQ+I+KEE+S DNE GGWTGW+E +S   G+   S
Sbjct:   486 SSNGARVGEEGAFGWLLWLEKEEENRQKILKEESSDDNEVGGWTGWTEQVSGRNGDDIAS 545

Query:   534 EELGDDNVSAE--EAEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEE 591
                G+ +V  +  + E+E E  K EDDTE +LKLLGID++  A+ EVKDTSTW +W EEE
Sbjct:   546 ANTGEVDVDRKGLDEEMEDENSKPEDDTEAMLKLLGIDVNTAASDEVKDTSTWVKWFEEE 605

Query:   592 SSRDCDHWMPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYXXXXXXXXXXXXXXYQ 651
              SRD   WMP          +   +GE +EQL  V++YED+  Y              YQ
Sbjct:   606 VSRDHSQWMPTRKAGEFSSVEGMGEGEDEEQLSSVVLYEDINGYLFSLRSKEARLSLVYQ 665

Query:   652 FIHFFGGKVSQGICTNSSSWNENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDIL 711
             FI FFG  +S    +NS SW+E + +LET  D + E+L  + +  +K+ S ++ FSL  L
Sbjct:   666 FIDFFGAHISPWTSSNSLSWSEKISSLETFSDSMLENLRSVHECLSKSDS-ANCFSLGSL 724

Query:   712 LGSSNDISRRTKMMEFLRNAILLCLTVFPRNYXXXXXXXXXXXXXXTKMNLSGCSVTPCQ 771
             LG S D+S RT+MM+FLRNAILLCL VFPRNY              T M     +  PCQ
Sbjct:   725 LGGSCDLSMRTEMMKFLRNAILLCLNVFPRNYILEEAVLVAEELFVTNMKTCEVATMPCQ 784

Query:   772 PLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYL 831
              LAK LLKSDRQD+LLCGVYA+REA  GN+ HARRVFDMAL+SI GLP  L+ N PLL L
Sbjct:   785 ALAKRLLKSDRQDLLLCGVYAQREAASGNMKHARRVFDMALTSICGLPKELQCNTPLLCL 844

Query:   832 WYAEVELXXXXXXX--XXXXLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIK 889
             WYAE E+              RA+H+L  LGSG  Y+P+  Q S++Q+LRA QG+ E++K
Sbjct:   845 WYAESEVANSSGSGRDTESSSRAMHILCYLGSGLAYSPYTSQSSSMQILRARQGFREKLK 904

Query:   890 AVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFL 949
              ++S W  G   DQS AL+CSAALFEELTN     +E+L   F+ VLP R+S SHQLE L
Sbjct:   905 KIQSTWSHGVTDDQSAALVCSAALFEELTNDLPGALEILEHMFSSVLPGRKSQSHQLELL 964

Query:   950 FNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDL 1009
             FN+ VRMLQRH   L+LS +W+    GLQ+YP +P+L+  LV+I N   T +KLR +FD 
Sbjct:   965 FNYYVRMLQRHQDDLTLSQLWKPISEGLQLYPLNPELYRALVDICNHRMTSHKLRMMFDD 1024

Query:  1010 YCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIAS 1069
             Y  K  S+VV LFAL++E+S+ G  HRIRGLFERALA DT   SV+LWR YIAYE+ IA 
Sbjct:  1025 YSRKNSSVVVWLFALSYELSKGGSSHRIRGLFERALAQDTQNNSVILWRCYIAYEIDIAD 1084

Query:  1070 NPXXXXXXXXXXXHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEI 1129
             NP           +ACPWSK+LWLDGF KL S+LTAKE+SDLQEVMRDKELN+RTDIYEI
Sbjct:  1085 NPSAARRIYFRAINACPWSKKLWLDGFGKLGSVLTAKEMSDLQEVMRDKELNIRTDIYEI 1144

Query:  1130 LL 1131
             LL
Sbjct:  1145 LL 1146
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
MGI|MGI:2670969 Nrde2 "nrde-2 necessary for RNA interference, domain containing" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H7Z3 NRDE2 "Protein NRDE2 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1565082 Nrde2 "NRDE-2, necessary for RNA interference, domain containing" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N543 C10H14orf102 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283719 DDB_G0283719 "DUF1740 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC20F10.05 nrl1 "NRDE-2 family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000032811 AN5456 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0030625 CG5877 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007745001
SubName- Full=Chromosome undetermined scaffold_200, whole genome shotgun sequence; (1157 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1134
pfam08424324 pfam08424, NRDE-2, NRDE-2, necessary for RNA inter 6e-85
>gnl|CDD|219834 pfam08424, NRDE-2, NRDE-2, necessary for RNA interference Back     alignment and domain information 
 Score =  278 bits (712), Expect = 6e-85
 Identities = 110/339 (32%), Positives = 164/339 (48%), Gaps = 20/339 (5%)

Query: 260 VLRKTKEFNKLTREHPYDVKGWLEFADFQDVV---GSKESKRGVRLQILEKKISILEKAV 316
           +L++  E N+  RE+P D+  W+E   FQ+ +     + S +  R Q+ EKK+SILEKA+
Sbjct: 1   ILKRNAELNRKVRENPEDIDAWIELIRFQEELLRLSRRRSTKAERKQLAEKKLSILEKAL 60

Query: 317 ELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKV 376
           + NPD+E LLL L++  +    TD L++RWEK+L ++ GS KLWR++L   QG+FS F  
Sbjct: 61  KHNPDSERLLLGLLEEGEKVWDTDELLKRWEKVLKENPGSPKLWRKYLDFRQGDFSTFSY 120

Query: 377 SELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAG 436
           S++RK Y   ++AL AA               +   A+ +LE  ++ +FL L R   QAG
Sbjct: 121 SKVRKTYEKCLRALKAAL----------NGTITSHQAVPELEEVMLYLFLRLTRFLRQAG 170

Query: 437 YQELATALFQAEIEFSLFCPSLLLTEQSKHRL--FEHFWNGDGARVGEEGALGWSAWLEK 494
           + ELA AL+QA +E + F P  L    +  +L  FE FW  +  R+GE GA GW  WLE+
Sbjct: 171 FTELAVALWQALLELNFFRPDGLKATSTAEKLKAFEEFWESEVPRIGEPGAKGWRKWLEQ 230

Query: 495 EEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKEVMK 554
            EE        ++    +   +  W         N+       D     EE E +   + 
Sbjct: 231 LEEPSDNPDPSKSGDSEDPQMFESWLRVERSRIANARLPARSLD-----EEDEDDPFRVV 285

Query: 555 QEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESS 593
             DD E  L LL          E               +
Sbjct: 286 LFDDIEPFLYLLPSPTVAFQLVEAFLQFCGLPPIPSAIN 324

This is a family of eukaryotic proteins. Eukaryotic cells express a wide variety of endogenous small regulatory RNAs that regulate heterochromatin formation, developmental timing, defence against parasitic nucleic acids, and genome rearrangement. Many small regulatory RNAs are thought to function in nuclei, and in plants and fungi small interfering (si)RNAs associate with nascent transcripts and direct chromatin and/or DNA modifications. This family protein, NRDE-2, is required for small interfering (si)RNA-mediated silencing in nuclei. NRDE-2 associates with the Argonaute protein NRDE-3 within nuclei and is recruited by NRDE-3/siRNA complexes to nascent transcripts that have been targeted by RNA interference, RNAi, the process whereby double-stranded RNA (dsRNA) directs the sequence-specific degradation of mRNA. Length = 324

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1134
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 100.0
KOG1972913 consensus Uncharacterized conserved protein [Funct 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 99.97
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.93
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.92
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.87
KOG2047835 consensus mRNA splicing factor [RNA processing and 99.82
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.5
KOG1972913 consensus Uncharacterized conserved protein [Funct 99.41
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.36
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.07
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 98.99
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 98.99
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 98.88
PRK11788389 tetratricopeptide repeat protein; Provisional 98.83
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 98.8
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 98.78
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 98.78
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 98.75
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 98.75
KOG1258 577 consensus mRNA processing protein [RNA processing 98.73
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 98.68
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 98.62
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.58
KOG1258577 consensus mRNA processing protein [RNA processing 98.57
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 98.52
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 98.5
KOG2396 568 consensus HAT (Half-A-TPR) repeat-containing prote 98.42
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 98.39
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 98.34
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 98.33
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 98.26
PRK10747398 putative protoheme IX biogenesis protein; Provisio 98.19
PRK10747398 putative protoheme IX biogenesis protein; Provisio 98.16
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 98.12
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 98.08
PRK11788389 tetratricopeptide repeat protein; Provisional 98.08
PLN03218 1060 maturation of RBCL 1; Provisional 98.03
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 98.0
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 97.98
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 97.91
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 97.91
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 97.85
KOG0547606 consensus Translocase of outer mitochondrial membr 97.84
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 97.79
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 97.77
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 97.77
PLN03218 1060 maturation of RBCL 1; Provisional 97.77
COG5191 435 Uncharacterized conserved protein, contains HAT (H 97.76
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 97.76
PLN03077 857 Protein ECB2; Provisional 97.6
PRK12370553 invasion protein regulator; Provisional 97.54
KOG0547606 consensus Translocase of outer mitochondrial membr 97.53
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 97.5
PRK12370553 invasion protein regulator; Provisional 97.46
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 97.45
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 97.39
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 97.33
KOG2076 895 consensus RNA polymerase III transcription factor 97.18
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 97.09
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 97.05
PF08424 321 NRDE-2: NRDE-2, necessary for RNA interference; In 97.03
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 97.01
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 97.0
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 96.99
PLN03077857 Protein ECB2; Provisional 96.92
PRK11189296 lipoprotein NlpI; Provisional 96.89
KOG2003 840 consensus TPR repeat-containing protein [General f 96.89
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 96.88
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 96.62
TIGR02552135 LcrH_SycD type III secretion low calcium response 96.6
PRK14574 822 hmsH outer membrane protein; Provisional 96.24
COG5191 435 Uncharacterized conserved protein, contains HAT (H 96.19
PRK15359144 type III secretion system chaperone protein SscB; 96.16
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 96.13
KOG1126638 consensus DNA-binding cell division cycle control 96.12
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 96.11
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 96.11
PRK14574 822 hmsH outer membrane protein; Provisional 96.08
PRK10370198 formate-dependent nitrite reductase complex subuni 95.96
KOG1129478 consensus TPR repeat-containing protein [General f 95.88
KOG1126638 consensus DNA-binding cell division cycle control 95.86
cd05804355 StaR_like StaR_like; a well-conserved protein foun 95.84
KOG4162799 consensus Predicted calmodulin-binding protein [Si 95.84
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 95.8
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 95.71
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 95.5
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 95.29
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 95.19
cd05804355 StaR_like StaR_like; a well-conserved protein foun 95.18
KOG1125579 consensus TPR repeat-containing protein [General f 95.09
KOG2076 895 consensus RNA polymerase III transcription factor 95.07
PRK11189296 lipoprotein NlpI; Provisional 95.02
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 94.95
cd00189100 TPR Tetratricopeptide repeat domain; typically con 94.91
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 94.77
KOG1173 611 consensus Anaphase-promoting complex (APC), Cdc16 94.71
KOG2003840 consensus TPR repeat-containing protein [General f 94.7
PRK10370198 formate-dependent nitrite reductase complex subuni 94.68
KOG3060289 consensus Uncharacterized conserved protein [Funct 94.51
KOG2376 652 consensus Signal recognition particle, subunit Srp 94.22
PLN02789320 farnesyltranstransferase 94.18
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 94.05
PF1337173 TPR_9: Tetratricopeptide repeat 93.92
TIGR02552135 LcrH_SycD type III secretion low calcium response 93.74
PF1342844 TPR_14: Tetratricopeptide repeat 93.6
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 93.47
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 93.44
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 93.23
PLN02789320 farnesyltranstransferase 93.09
PF1337173 TPR_9: Tetratricopeptide repeat 93.08
COG4783484 Putative Zn-dependent protease, contains TPR repea 92.97
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 92.9
KOG11271238 consensus TPR repeat-containing protein [RNA proce 92.56
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 92.22
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 92.11
PF1342844 TPR_14: Tetratricopeptide repeat 91.92
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 91.81
cd00189100 TPR Tetratricopeptide repeat domain; typically con 91.73
PRK10153517 DNA-binding transcriptional activator CadC; Provis 91.57
PRK15359144 type III secretion system chaperone protein SscB; 90.95
KOG1155 559 consensus Anaphase-promoting complex (APC), Cdc23 90.87
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 90.65
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 90.51
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 90.45
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 90.44
KOG1129478 consensus TPR repeat-containing protein [General f 90.1
COG4783484 Putative Zn-dependent protease, contains TPR repea 90.03
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 89.48
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 89.05
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 88.43
KOG3060289 consensus Uncharacterized conserved protein [Funct 87.34
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 87.3
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 87.24
PRK11906458 transcriptional regulator; Provisional 87.06
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 86.7
PRK11906458 transcriptional regulator; Provisional 86.39
PF1343134 TPR_17: Tetratricopeptide repeat 85.89
PRK04841903 transcriptional regulator MalT; Provisional 84.8
PRK10153517 DNA-binding transcriptional activator CadC; Provis 84.76
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 84.66
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 83.78
PRK02603172 photosystem I assembly protein Ycf3; Provisional 83.73
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 83.58
PRK14720 906 transcript cleavage factor/unknown domain fusion p 83.56
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 82.83
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 82.49
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 82.41
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 81.47
KOG1125579 consensus TPR repeat-containing protein [General f 80.87
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=8.3e-76  Score=669.20  Aligned_cols=313  Identities=36%  Similarity=0.713  Sum_probs=275.9

Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHhhhhhhcccccc-cchhhHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhccCC
Q 001167          260 VLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESK-RGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDG  338 (1134)
Q Consensus       260 ~~~r~~eln~~v~e~P~Di~~Wl~li~~Qd~~~~~~~~-k~~~~~~~E~KlsilekAL~~~p~~~~Lll~~l~~~~~~w~  338 (1134)
                      +++|+++||++|++||+||++||+||+|||++...+.. +..+.+++|+|||||||||++||++++|+++||++|.++|+
T Consensus         1 i~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~   80 (321)
T PF08424_consen    1 IRKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD   80 (321)
T ss_pred             CchHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999999877654 66788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCCCCCCChHHHHHH
Q 001167          339 TDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLE  418 (1134)
Q Consensus       339 ~~~l~~~W~~~l~~~p~~~~LW~~yL~~~q~~~~~F~~~~~~~~y~~~l~~l~~~~~~~~~q~~~~~~~~~~~~~~~~~e  418 (1134)
                      +++|.++|++++++||+++.||++||+|+|++|++|+|++|+++|.+||++|+..+.+.          ...+++.+++|
T Consensus        81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~----------~~~~~~~~~~e  150 (321)
T PF08424_consen   81 SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR----------MTSHPDLPELE  150 (321)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc----------cccccchhhHH
Confidence            99999999999999999999999999999999999999999999999999999875332          12456788999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhccCCccccchh--HHHHHhhhhhccCCCcCCCCCccchhHHHHhhH
Q 001167          419 LGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQ--SKHRLFEHFWNGDGARVGEEGALGWSAWLEKEE  496 (1134)
Q Consensus       419 ~~~l~if~r~~~fl~qaG~~E~Ava~~QA~lE~n~f~P~~~~~~~--~~~~~Fe~FWeS~~pRiGE~gA~GW~~~~~~~~  496 (1134)
                      +.||+||+|+|+|++||||+|+|||+|||+||||||+|..+.+..  +++++|++|||||+|||||+||+||++|+++++
T Consensus       151 ~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS~vpRiGE~gA~GW~~~~~~~~  230 (321)
T PF08424_consen  151 EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWESEVPRIGEPGAKGWRKWMEQGE  230 (321)
T ss_pred             HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCcCCCCCCCCCcchhhhhhcccc
Confidence            999999999999999999999999999999999999999976543  889999999999999999999999999997542


Q ss_pred             HHHHhhhhhccccccCCCCCCCCCCCCccCCCCCCCCcccCCCCcchHHHHHHHhhhcccchhHHHHHhhcccccccccc
Q 001167          497 ENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANA  576 (1134)
Q Consensus       497 ~~~q~~~~~~~~~~~~~gg~~~~~~p~~k~~~~~~~~~~~~~~~~~~e~e~~e~e~~~~e~d~~~~~~~lg~~~d~~~~~  576 (1134)
                      +                +.+.    |.                +.        .... .                     
T Consensus       231 ~----------------~~~~----~~----------------~~--------~~~~-~---------------------  244 (321)
T PF08424_consen  231 E----------------GPQP----PE----------------PQ--------EEEP-E---------------------  244 (321)
T ss_pred             c----------------ccCC----Cc----------------cc--------cccc-c---------------------
Confidence            1                1100    00                00        0000 0                     


Q ss_pred             cccCcchHhhHHHHHhcccccCcccCCCCCCCCCCCCCCCCccccCCCceeEeccccchhcccCChHHHHHHHHHHHHhh
Q 001167          577 EVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFF  656 (1134)
Q Consensus       577 ~~k~~~~~~~W~~~E~~r~~~~~lP~R~~~~~~~~~~~~~~~~~ddp~RvVlf~DI~~~Lf~l~s~~~~~~Li~~FL~F~  656 (1134)
                        .+..+|+.|...|+.|+..+|||+|+.+          +++||||||||+|+||+++||.+++++++.+|+++||.||
T Consensus       245 --~~~~~~~~W~~~E~~r~~~~~lP~R~~d----------e~~~dDp~RvVlf~DI~~~L~~l~~~~~~~~L~~~fl~f~  312 (321)
T PF08424_consen  245 --QSEDPWESWAEVERSRDANHWLPARTMD----------EDDEDDPFRVVLFSDIEPFLFRLPSPENKLELVDAFLQFL  312 (321)
T ss_pred             --cchhHHHHHHHHHHhhHHhhcCCCCCCC----------CcccCCcccccCHHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence              0013899999999999999999999843          5678899999999999999999999999999999999999


Q ss_pred             CCCC
Q 001167          657 GGKV  660 (1134)
Q Consensus       657 Glpl  660 (1134)
                      |+|+
T Consensus       313 glp~  316 (321)
T PF08424_consen  313 GLPP  316 (321)
T ss_pred             CCCC
Confidence            9753

>KOG1972 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1972 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1134
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-06
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 71.8 bits (175), Expect = 1e-12
 Identities = 72/519 (13%), Positives = 145/519 (27%), Gaps = 180/519 (34%)

Query: 52  VDDAVSAAASAYKDESDDNEE---KD-------DQPRPSLSPSY--DLLEEESDEERQRK 99
           +D         YKD     E+    +       D P+  LS      ++  +       +
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 100 KKD---KKKKRKRRRSKERGDQFD-SFVSAKSKDYYFDSHGDRDNLVY--GRLYR----- 148
                  K++   ++  E   + +  F+ +  K             +    RLY      
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 149 --MDVPRYKAYDP--EKLSRFHSEGVVRLN------KS---GSVLDGDYDV-NEMDSKVK 194
              +V R + Y    + L        V ++      K+     V    Y V  +MD K+ 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKI- 184

Query: 195 SGGRYW------SSKYAALERHKNLKHVCLILPKKSAVSEYGEDFIPLLGTEMS------ 242
               +W      +S    LE  + L +   I P  ++ S++  + I L    +       
Sbjct: 185 ----FWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSN-IKLRIHSIQAELRRL 237

Query: 243 -IEGHHDNS--ILEESWEDEVLRKTKEFN---KL---TREH------PYDVKGWLEFADF 287
                ++N   +L      +       FN   K+   TR               +     
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 288 QDVVGSKESKRGVRLQILEKKISIL-EKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRW 346
              +   E K  + L+ L+ +   L  + +  NP      LS++     RDG       W
Sbjct: 295 SMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNP----RRLSIIAE-SIRDGLA----TW 344

Query: 347 EKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVK 406
           +            W+     V  +    K++ + +             +           
Sbjct: 345 DN-----------WKH----VNCD----KLTTIIES-----------SLNV--------- 365

Query: 407 PASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQSKH 466
              L+PA                  E++  +  L+  +F          P++LL+     
Sbjct: 366 ---LEPA------------------EYRKMFDRLS--VFPPSAHI----PTILLS----- 393

Query: 467 RLFEHFWNGDGARVGEEGALGWSAWLEKEEENRQRIVKE 505
            +                      W +  + +   +V +
Sbjct: 394 LI----------------------WFDVIKSDVMVVVNK 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1134
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.88
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.79
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.78
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.72
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.7
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.66
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.65
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.45
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.27
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.19
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.17
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.16
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.15
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.1
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.07
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.06
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 98.99
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 98.94
2gw1_A514 Mitochondrial precursor proteins import receptor; 98.9
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 98.9
4eqf_A365 PEX5-related protein; accessory protein, tetratric 98.88
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 98.86
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 98.85
4eqf_A365 PEX5-related protein; accessory protein, tetratric 98.84
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 98.8
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 98.72
2gw1_A514 Mitochondrial precursor proteins import receptor; 98.71
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 98.67
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 98.65
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 98.56
3u4t_A272 TPR repeat-containing protein; structural genomics 98.55
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 98.51
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 98.49
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 98.47
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 98.45
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 98.39
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 98.38
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 98.34
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 98.34
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 98.33
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 98.32
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 98.31
3u4t_A272 TPR repeat-containing protein; structural genomics 98.27
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 98.25
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 98.24
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 98.22
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 98.19
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 98.13
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 98.11
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 98.09
4g1t_A472 Interferon-induced protein with tetratricopeptide 97.99
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 97.97
4g1t_A472 Interferon-induced protein with tetratricopeptide 97.95
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 97.87
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 97.87
4i17_A228 Hypothetical protein; TPR repeats protein, structu 97.81
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 97.79
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 97.75
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 97.74
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 97.74
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 97.73
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 97.73
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 97.72
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 97.68
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 97.66
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 97.62
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 97.54
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 97.45
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 97.45
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 97.43
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 97.34
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 97.33
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 97.32
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 97.3
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 97.29
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 97.25
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 97.22
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 97.22
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 97.19
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 97.16
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 97.15
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 97.13
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 97.1
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 97.08
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 97.02
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 97.01
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 96.99
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 96.96
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 96.93
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 96.9
4i17_A228 Hypothetical protein; TPR repeats protein, structu 96.9
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 96.87
3q15_A378 PSP28, response regulator aspartate phosphatase H; 96.85
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 96.85
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 96.73
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 96.65
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 96.61
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 96.6
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 96.55
3q49_B137 STIP1 homology and U box-containing protein 1; E3 96.54
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 96.54
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 96.51
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 96.5
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 96.48
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 96.43
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 96.38
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 96.36
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 96.32
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 96.3
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 96.19
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 96.18
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 96.17
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 96.17
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 96.15
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 96.1
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 96.07
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 95.98
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 95.96
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 95.82
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 95.74
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 95.67
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 95.65
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 95.54
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 95.49
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 95.45
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 95.42
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 95.32
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 95.31
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 95.2
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 95.19
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 95.18
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 95.17
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 95.17
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 95.15
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 95.07
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 95.03
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 95.03
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 95.02
3q15_A378 PSP28, response regulator aspartate phosphatase H; 94.93
2kat_A115 Uncharacterized protein; NESG, structure, structur 94.9
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 94.74
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 94.67
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 94.66
3q49_B137 STIP1 homology and U box-containing protein 1; E3 94.66
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 94.52
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 94.41
3k9i_A117 BH0479 protein; putative protein binding protein, 94.3
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 94.23
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 94.23
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 94.22
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 94.12
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 94.05
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 93.91
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 93.8
3k9i_A117 BH0479 protein; putative protein binding protein, 93.78
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 93.65
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 93.53
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 93.39
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 93.21
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 93.19
2kat_A115 Uncharacterized protein; NESG, structure, structur 93.08
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 93.04
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 92.99
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 92.98
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 92.9
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 92.84
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 92.71
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 92.63
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 92.38
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 92.34
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 92.26
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 92.18
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 92.06
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 92.03
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 92.02
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 92.01
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 91.86
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 91.38
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 91.18
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 91.06
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 90.96
3u3w_A293 Transcriptional activator PLCR protein; ternary co 90.91
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 90.53
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 90.46
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 90.37
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 90.24
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 90.07
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 89.51
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 89.51
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 89.33
2l6j_A111 TPR repeat-containing protein associated with HSP; 88.94
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 88.89
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 88.86
2l6j_A111 TPR repeat-containing protein associated with HSP; 88.8
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 88.45
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 88.44
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 88.33
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 88.24
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 88.07
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 87.23
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 86.82
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 86.74
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 86.74
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 85.97
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 84.03
3u3w_A293 Transcriptional activator PLCR protein; ternary co 83.12
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 82.81
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 82.09
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 80.73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
Probab=99.88  E-value=1e-19  Score=225.93  Aligned_cols=245  Identities=10%  Similarity=0.045  Sum_probs=184.5

Q ss_pred             hHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCch
Q 001167          770 CQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHAR-RVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDS  848 (1134)
Q Consensus       770 aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~AR-kVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~  848 (1134)
                      ++.+.++.|..+|.+-.+|..||+++..+|+.+.|+ +||++|+..+|.        ...||+.||.+|+..++      
T Consensus       328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--------s~~Lwl~~a~~ee~~~~------  393 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--------SAVLAFSLSEQYELNTK------  393 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCC------
Confidence            456778888889999999999999999999999996 999999998872        35799999999998753      


Q ss_pred             HHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001167          849 SLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVL  928 (1134)
Q Consensus       849 ~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~  928 (1134)
                      +++                            ||..|+.++.....                   .+..+.......    
T Consensus       394 ~e~----------------------------aR~iyek~l~~l~~-------------------~~~~~~~~~p~~----  422 (679)
T 4e6h_A          394 IPE----------------------------IETTILSCIDRIHL-------------------DLAALMEDDPTN----  422 (679)
T ss_dssp             HHH----------------------------HHHHHHHHHHHHHH-------------------HHHHHHHHSTTC----
T ss_pred             HHH----------------------------HHHHHHHHHHHHHH-------------------HhhhhhhccCcc----
Confidence            333                            34444444322100                   000000000000    


Q ss_pred             HHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhhCC-ChhHHHHH
Q 001167          929 HQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYP-YSPKLFNTLVEISNLYT-TPNKLRWI 1006 (1134)
Q Consensus       929 ~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP-~N~~ll~~~~~lE~~~~-~~~raR~i 1006 (1134)
                      ...+..       .......+|+.+++++.+.+   ++..+|.++.+|++..| ....+|..++.+|...+ ..++||.+
T Consensus       423 ~~~~~~-------~~~~~~~vWi~y~~~erR~~---~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~i  492 (679)
T 4e6h_A          423 ESAINQ-------LKSKLTYVYCVYMNTMKRIQ---GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV  492 (679)
T ss_dssp             HHHHHH-------HHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred             hhhhhh-------hccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence            000010       01235679999999998764   68899999999999844 45677888888997654 47999999


Q ss_pred             HHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC-CCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh
Q 001167         1007 FDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDT-VRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus      1007 l~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~-~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~ 1084 (1134)
                      |++++..+| +...|+.++.+|... |...+||++||+|+.... ...+..||..|++||... |+.+.++.|+.|++++
T Consensus       493 fe~~Lk~~p~~~~~w~~y~~fe~~~-~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~-G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          493 LELGLKYFATDGEYINKYLDFLIYV-NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV-GSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            999999988 778888999999877 799999999999998322 125789999999999996 9999999999999999


Q ss_pred             CCCcHHH
Q 001167         1085 CPWSKRL 1091 (1134)
Q Consensus      1085 CPwsK~L 1091 (1134)
                      ||.++.+
T Consensus       571 ~P~~~~~  577 (679)
T 4e6h_A          571 FPEVNKL  577 (679)
T ss_dssp             STTCCHH
T ss_pred             CCCCcHH
Confidence            9987653
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1134
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.79
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.66
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.19
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.64
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 98.54
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 97.69
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 97.54
d1hz4a_366 Transcription factor MalT domain III {Escherichia 97.47
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 97.23
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 96.96
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 96.89
d1hz4a_366 Transcription factor MalT domain III {Escherichia 96.55
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 96.13
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 95.99
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 95.85
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 95.76
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 95.54
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 95.38
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 94.71
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 94.42
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 93.66
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 93.26
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 92.73
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 92.33
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 92.29
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 92.27
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 91.7
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 90.77
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 89.85
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 89.68
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 88.01
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 87.04
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 86.37
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 86.02
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 85.43
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 83.2
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 82.46
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 81.53
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 80.87
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 80.68
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 80.33
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5.2e-18  Score=188.18  Aligned_cols=257  Identities=15%  Similarity=0.106  Sum_probs=203.4

Q ss_pred             CCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 001167          783 QDVLLCGVYARREAFFG--------NIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIH  854 (1134)
Q Consensus       783 ~nl~LW~aYA~lE~~~G--------n~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~  854 (1134)
                      ..+.+|..|+.+|..++        ..++++.||++||...|.        .+.+|+.|++++...++            
T Consensus         6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~--------~~~lW~~y~~~~~~~~~------------   65 (308)
T d2onda1           6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH--------HPDIWYEAAQYLEQSSK------------   65 (308)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHcCc------------
Confidence            35789999999998765        356788999999999873        45799999998876431            


Q ss_pred             HHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001167          855 VLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAM  934 (1134)
Q Consensus       855 iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~  934 (1134)
                      .+...+..        ......+.+|+..|+.++...         ......+|..||.++...++++.|+.+|++++..
T Consensus        66 ~~~~~~~~--------~~~~~~~~~a~~i~~ral~~~---------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~  128 (308)
T d2onda1          66 LLAEKGDM--------NNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  128 (308)
T ss_dssp             HHHHTSCC--------HHHHHHHHHHHHHHHHHHTTT---------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHH--------hhcccchHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            11111100        012345567788888775321         1233567789999999999999999999999875


Q ss_pred             hcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-hCCChhHHHHHHHHHHhh
Q 001167          935 VLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISN-LYTTPNKLRWIFDLYCHK 1013 (1134)
Q Consensus       935 ~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~-~~~~~~raR~il~~~~~~ 1013 (1134)
                      .+       .....+|..++.++..++   ++..+|.++.+++..+|.+..+|..++.++. ..+..++++.+|++++..
T Consensus       129 ~~-------~~~~~~w~~~~~~~~~~~---~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~  198 (308)
T d2onda1         129 ED-------IDPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             SS-------SCTHHHHHHHHHHHHHHH---CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             hc-------CChHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            32       235678999999987654   6788999999999999999999988888774 467899999999999998


Q ss_pred             CC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC--CCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167         1014 KP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTV--RCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus      1014 ~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~--~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
                      +| +..+|+.++.+|... |+..+||.+|++|+.....  ..+..+|..|++||... |+.+.++.|+.|+.+.+|-.
T Consensus       199 ~p~~~~~w~~y~~~~~~~-g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~-G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         199 YGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHTTTT
T ss_pred             hhhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCccc
Confidence            77 788999999999876 8999999999999984322  24678999999999986 99999999999999999955
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure