Citrus Sinensis ID: 001174

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130--

MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRLFDEHSSSEEEDSISASDQEVAQDEDDKQEEEEEDEAPLIHSIRSSAKLRALRVSREDNKLQTKTTSGRTSGASG

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccccccHHHcccccccHHHHccccccccHHHHcccccccccccHHHHHHcccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccEEcHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHEcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHcccHEEccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccHcccccccccccccccccccccccccccccccccHcccccHcccccHHHHHHcEEEEccccccccccccccccccc

medqplapetttrrskrktngastenqertsdasdqmepsgqrehspddfeeirpktkrsrasegtaaSAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAkyylqgesldeidvDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVEcqngplfdkVLFDKCMDYIialsctpprVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEkkkrvegprvesLNKRLSMTHKNITDLEDMMRKIFTGLFVhryrdidpnirmSCIQSLGVWILSYPSFFLQDLYLKYLGwtlndksasvRKSSVLALQNLyevddnvptlglFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRhqllpdddlgplydlliddppEIRRAIGELVYDHLIAQkfnssqsglkgkdndsseVHLGRMLQILRefsadpilsiyVIDDVWEYMKAMKDWKCIISMlldenplidlndddaTNLIRLLSASVKKAVgerivpasdnrkpyynKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELqlskavpieSLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEyflnspseveegsrvGNQLACRVCTILAEMWCLFrmtnfsstklsrlgycpdipVLQKFWKLCEQQLnisdetededvNKEYIEETNRDAVMIAAAKLIAidsvpkeylgpeiISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVeisrsddkslteKSFVECKELSsrlsgtyvgaarnkhRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHfvsklptpdiLDILKDVQirtdnvnmdedpsgwrpFKSFVETLREKYtknegiqeEKEAVTVRrrgrprkkrniegkrlfdehssseeedsisasdqevaqdeddkqeeeeedeaplihSIRSSAKLRALRVsrednklqtkttsgrtsgasg

medqplapetttrrskrktngastenqertsdasdqmepsgqrehspddfeeirpktkrsrasegtaasaqsIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLarrgevedyqsskrkeLKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQREttqrqlnaekkkrvegprveslnkrlsmthknitdleDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQnlyevddnvptLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKfnssqsglkgkdNDSSEVHLGRMLQILrefsadpilSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSasvkkavgerivpasdnrkpyynkaqkevfennkreiTRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSaesqgelqdsaRKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLnisdetededvNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHaveisrsddkslteksfveckelssrlsgtyvgaarnkhrsdiLKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDnvnmdedpsgwrpFKSFVETLREkytknegiqeekeavtvrrrgrprkkrniegkrlfdehssseeedsisasdqevaQDEDDKQeeeeedeaplihsirssaklralrvsrednklqtkttsgrtsgasg

MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIdvddvvvALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQllpdddlgplydlliddppEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDkliaklksaikaVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFlllnlylylAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVrrrgrprkkrNIEGKRLFdehssseeedsisasdqevaqdeddkqeeeeedeAPLIHSIRSSAKLRALRVSREDNKLQTKTTSGRTSGASG

************************************************************************IELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE*********LKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLG***********************************NITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKF*****************HLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIV***********************EITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCS******************EDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSP*****GSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNIS*********KEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVE**************VECKEL**RLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVN*******WRPFKSFVE****************************************************************************************************************

****************************************************************************LIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQR*******************************KNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLI*********************HLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAV***************************REITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSL*****************LLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWC****************YCPDIPVLQKFWKLCEQQL**********************AVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRH*****************VECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQ***************RPFKSFVET***************************************************************************************************************

**********************************************************************QSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQ********************VESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSS**********SSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNS**********GNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRL*************************************LIHSIRSSAKLRALRVSR*******************

**************************************************************************LSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKF************DSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYT*******************************************************************PLIH*IRSSAKL*A************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRLFDEHSSSEEEDSxxxxxxxxxxxxxxxxxxxxxDEAPLIHSIRSSAKLRALRVSREDNKLQTKTTSGRTSGASG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1132	2.2.26 [Sep-21-2011]
Q8WVM7		1258	Cohesin subunit SA-1 OS=H	yes	no	0.836	0.752	0.253	3e-76
Q9D3E6		1258	Cohesin subunit SA-1 OS=M	yes	no	0.836	0.752	0.253	8e-76
Q9UJ98		1225	Cohesin subunit SA-3 OS=H	no	no	0.767	0.709	0.259	3e-71
Q9DGN1		1265	Cohesin subunit SA-1 OS=X	N/A	no	0.874	0.782	0.25	5e-71
Q8N3U4		1231	Cohesin subunit SA-2 OS=H	no	no	0.787	0.724	0.252	5e-69
O35638		1231	Cohesin subunit SA-2 OS=M	no	no	0.784	0.721	0.252	1e-68
Q99M76		1256	Cohesin subunit SA-3 OS=R	no	no	0.833	0.750	0.260	7e-66
O70576		1240	Cohesin subunit SA-3 OS=M	no	no	0.880	0.804	0.252	4e-65
Q9DGN0		1194	Cohesin subunit SA-2 OS=X	N/A	no	0.775	0.735	0.251	9e-65
O13816		962	Cohesin subunit psc3 OS=S	yes	no	0.481	0.566	0.240	2e-40

>sp\|Q8WVM7\|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3	Back alignment and function desciption

 Score =  287 bits (735), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 254/1001 (25%), Positives = 461/1001 (46%), Gaps = 54/1001 (5%)

Query: 59   RSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEAC 118
            R RA+     + +   ++L EV+K     +  VV  W+E Y++D   A+ +L+    +  
Sbjct: 69   RGRANGHPQQNGEGEPVTLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQCS 128

Query: 119  GAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVE 178
            G +  ++ E    +   +++  +         +   +    + K F+ N   F   L+ +
Sbjct: 129  GCRGTVRIEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQ 188

Query: 179  CQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQ 238
            CQ   ++D+ + D  +  +  LS +  R +R  ++L  ++L+T+ ++VA  L   ++ TQ
Sbjct: 189  CQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQ 248

Query: 239  RQLNAEKKKRV---EGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIR 295
            RQ  AE+ K +      R+E L ++     +N  ++E+MM  IF G+FVHRYRD    IR
Sbjct: 249  RQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRDAIAEIR 308

Query: 296  MSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG 355
              CI+ +GVW+  Y   FL D YLKY+GWTL+D+   VR   + ALQ+LY   +  P L 
Sbjct: 309  AICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTNRELFPKLE 368

Query: 356  LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLR--HQLLPDDDLGPLYDLLIDDPPEIR 413
            LFT RF +R++ +  D +  VAV AI LV  +L    + L ++D   +Y L+      + 
Sbjct: 369  LFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLVYSAHRPVA 428

Query: 414  RAIGELVYDHLIAQKFNSSQSGL-KGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDV 472
             A GE ++  L ++    ++  L K +  +S   +L RML +    S     + Y++D +
Sbjct: 429  VAAGEFLHKKLFSRHDPQAEEALAKRRGRNSPNGNLIRMLVLFFLESELHEHAAYLVDSL 488

Query: 473  WE-YMKAMKDWKCIISMLLDENPLID---LNDDDATNLIRLLSASVKKAVGERIVPASDN 528
            WE   + +KDW+C+  +LL+E P+     ++D   + LI L+  ++++A           
Sbjct: 489  WESSQELLKDWECMTELLLEE-PVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGT 547

Query: 529  RKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLK 588
             K      +++   +++ ++T   +   P LL K+ AD  KV +L+ I  +  LE+YS  
Sbjct: 548  GKRVLTAKERKTQIDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTG 607

Query: 589  RDEKSFETILQLVNDAFFKHGEKEALRSCVKAIK-FCSAESQGELQ-DSARKNLKDVEDK 646
            R EK  + +L+ +     KH E + L +C K     CS E   + + D AR  L    D+
Sbjct: 608  RMEKHLDALLKQIKFVVEKHVESDVLEACSKTYSILCSEEYTIQNRVDIARSQLI---DE 664

Query: 647  LIAKLKSAIKAVL------DGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT-- 698
             + +   +++ +L      D DD Y++L  LKRL     +  +    L+ +   +L T  
Sbjct: 665  FVDRFNHSVEDLLQEGEEADDDDIYNVLSTLKRLTSFHNAHDLTKWDLFGNCYRLLKTGI 724

Query: 699  -FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSP 757
                +  ++V   L   +  + W L  I +     E     LL+ R T+   L       
Sbjct: 725  EHGAMPEQIVVQALQCSHYSILWQLVKITDGSPSKE----DLLVLRKTVKSFLAVCQQCL 780

Query: 758  SEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQ 817
            S V   + V  Q    +C +L  M    ++       L  L + PD  +  +        
Sbjct: 781  SNV--NTPVKEQAFMLLCDLL--MIFSHQLMTGGREGLQPLVFNPDTGLQSELLSFVMDH 836

Query: 818  LNISDETEDEDVNKEYIEETN-------RDAVMIAAAKLIAIDSVPKEYLGPEIISHFVM 870
            + I  + E++ +  +  +E N       R  ++ A +KLI  D V   +   +I  H++ 
Sbjct: 837  VFIDQDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDM-HAAADIFKHYMK 895

Query: 871  HGTNVAEIVKHLITVLKKKDE-DVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECK 929
            +  +  +I+K  ++  ++ D+   +   + +L++ +     E   + D++    S +  K
Sbjct: 896  YYNDYGDIIKETLSKTRQIDKIQCAKTLILSLQQLFNELVQEQGPNLDRTSAHVSGI--K 953

Query: 930  ELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFL--------DAPKQLSFLECAVLHFV 981
            EL+ R + T+ G  + K R  +    K+GI++AF           P  L+FLE  +  F 
Sbjct: 954  ELARRFALTF-GLDQIKTREAVATLHKDGIEFAFKYQNQKGQEYPPPNLAFLE-VLSEFS 1011

Query: 982  SKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETL 1022
            SKL   D   +   ++       M+     W P  S+  +L
Sbjct: 1012 SKLLRQDKKTVHSYLEKFLTEQMMERREDVWLPLISYRNSL 1052

Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Homo sapiens (taxid: 9606)

>sp\|Q9D3E6\|STAG1_MOUSE Cohesin subunit SA-1 OS=Mus musculus GN=Stag1 PE=1 SV=3	Back alignment and function description

>sp\|Q9UJ98\|STAG3_HUMAN Cohesin subunit SA-3 OS=Homo sapiens GN=STAG3 PE=1 SV=2	Back alignment and function description

>sp\|Q9DGN1\|STAG1_XENLA Cohesin subunit SA-1 OS=Xenopus laevis GN=stag1 PE=1 SV=1	Back alignment and function description

>sp\|Q8N3U4\|STAG2_HUMAN Cohesin subunit SA-2 OS=Homo sapiens GN=STAG2 PE=1 SV=3	Back alignment and function description

>sp\|O35638\|STAG2_MOUSE Cohesin subunit SA-2 OS=Mus musculus GN=Stag2 PE=1 SV=3	Back alignment and function description

>sp\|Q99M76\|STAG3_RAT Cohesin subunit SA-3 OS=Rattus norvegicus GN=Stag3 PE=2 SV=1	Back alignment and function description

>sp\|O70576\|STAG3_MOUSE Cohesin subunit SA-3 OS=Mus musculus GN=Stag3 PE=1 SV=2	Back alignment and function description

>sp\|Q9DGN0\|STAG2_XENLA Cohesin subunit SA-2 OS=Xenopus laevis GN=stag2 PE=1 SV=1	Back alignment and function description

>sp\|O13816\|SCC3_SCHPO Cohesin subunit psc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psc3 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1132
296086648		1144	unnamed protein product [Vitis vinifera]	0.997	0.986	0.765	0.0
359479838		1143	PREDICTED: cohesin subunit SA-1-like [Vi	0.996	0.986	0.765	0.0
255559372		1106	stromal antigen, putative [Ricinus commu	0.973	0.996	0.776	0.0
147777089		1616	hypothetical protein VITISV_016664 [Viti	0.977	0.684	0.737	0.0
449435958		1866	PREDICTED: cohesin subunit SA-1-like [Cu	0.969	0.588	0.736	0.0
449516549		1123	PREDICTED: cohesin subunit SA-1-like, pa	0.962	0.969	0.741	0.0
356505485		1126	PREDICTED: cohesin subunit SA-1-like [Gl	0.969	0.975	0.720	0.0
297824911		1085	sister-chromatide cohesion protein 3 [Ar	0.953	0.994	0.681	0.0
18407498		1098	cohesin complex subunit SA-1/2 [Arabidop	0.941	0.970	0.678	0.0
21537070		1098	putative sister-chromatide cohesion prot	0.941	0.970	0.677	0.0

>gi\|296086648\|emb\|CBI32283.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1734 bits (4492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/1147 (76%), Positives = 1006/1147 (87%), Gaps = 18/1147 (1%)

Query: 1    MEDQPLAPETTTRRSKR-----KTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRP 55
            MED     E TTRRSKR     KT     ++Q+RTS+ SDQ      RE S D+F E R 
Sbjct: 1    MEDAAQPSEITTRRSKRARVPAKTKFGENQSQDRTSEPSDQSPSEADREGSVDEFVEPRA 60

Query: 56   KTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLF 115
            + KR+R +EG++ +A+  + SLIEVIKGNGKLIPQVVKLWVE+YEKD KPA+ ELL MLF
Sbjct: 61   RAKRNR-TEGSSTAAKKFDQSLIEVIKGNGKLIPQVVKLWVEQYEKDPKPAMVELLMMLF 119

Query: 116  EACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNL 175
            EACGAKY+L+ E LDE DVDDVVVALVNLARRGE EDYQSSK+KE KNFKDNLVSFWDNL
Sbjct: 120  EACGAKYHLREELLDETDVDDVVVALVNLARRGEAEDYQSSKKKEFKNFKDNLVSFWDNL 179

Query: 176  VVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRE 235
            V+ECQNGPLFD+VLFDKC+DYIIALSCTPPRVYRQVASLMGLQLVTSFI+VAKMLGAQRE
Sbjct: 180  VIECQNGPLFDQVLFDKCVDYIIALSCTPPRVYRQVASLMGLQLVTSFITVAKMLGAQRE 239

Query: 236  TTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIR 295
            TTQRQLNAEKKKR EGPRVESLNKRLS TH+ IT +E+MMRKIFTGLFVHRYRDID +IR
Sbjct: 240  TTQRQLNAEKKKRTEGPRVESLNKRLSTTHEKITVIEEMMRKIFTGLFVHRYRDIDQDIR 299

Query: 296  MSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG 355
            MSCIQSLGVWI+SYPS FLQDLYLKYLGWTLNDKSA VRK+S+LALQNLY+VDDNVP+LG
Sbjct: 300  MSCIQSLGVWIISYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYDVDDNVPSLG 359

Query: 356  LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRA 415
            LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLL DDDLGPLYDLLIDD  EIR A
Sbjct: 360  LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLADDDLGPLYDLLIDDSTEIRHA 419

Query: 416  IGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEY 475
            IG LVYDHLIAQKFNSSQS  KG D DSSEVHLGRMLQILREFSADPILSIYVIDDVWEY
Sbjct: 420  IGALVYDHLIAQKFNSSQSHAKGDDGDSSEVHLGRMLQILREFSADPILSIYVIDDVWEY 479

Query: 476  MKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNK 535
            M AMKDWKCIISMLLDENPLI+L D+DATNLIRLL ASVKKAVGERIVPA+DNRK YYNK
Sbjct: 480  MNAMKDWKCIISMLLDENPLIELTDEDATNLIRLLCASVKKAVGERIVPATDNRKQYYNK 539

Query: 536  AQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFE 595
            AQKE+FE+N+R+IT AMMKNY +LLRKFMADKAKVPSLI+I++HM LELYSLKR E++F+
Sbjct: 540  AQKEIFEHNRRDITVAMMKNYSQLLRKFMADKAKVPSLIEIILHMNLELYSLKRQEQNFK 599

Query: 596  TILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAI 655
            T+LQL+ +AFFKHGEK+ALRSCVKAI FCS+E QGEL+D A+  LK++ED+LIAKLK+AI
Sbjct: 600  TLLQLMREAFFKHGEKDALRSCVKAINFCSSECQGELKDFAQNKLKELEDELIAKLKTAI 659

Query: 656  KAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLY 715
            K V DGDDEYSLLVNLKRLYELQLS++VPIESLYED+VMIL + +++D+EVVSFLL N+ 
Sbjct: 660  KEVADGDDEYSLLVNLKRLYELQLSRSVPIESLYEDMVMILKSSKSMDDEVVSFLLHNMS 719

Query: 716  LYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVC 775
            L++AW LH+IIN++TVSE SL+SLL KR TLFE+LE+FL + +EV+E  +  NQ ACRVC
Sbjct: 720  LHVAWCLHAIINSDTVSEESLSSLLSKRTTLFEQLEHFLYAHTEVQEEGKRANQPACRVC 779

Query: 776  TILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIE 835
             ILA++WCLF+ T FSSTKL  LGYCPD  VLQKFWKLCEQQLNISDETE++DVN+EY+E
Sbjct: 780  IILAQVWCLFKKTKFSSTKLESLGYCPDSSVLQKFWKLCEQQLNISDETEEDDVNQEYVE 839

Query: 836  ETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVST 895
            ETNRDAVMIAAA L+A D VPKEYLGPEIISHFVMHGT++AEIVK+LI VLKKKD+DV  
Sbjct: 840  ETNRDAVMIAAAMLVATDVVPKEYLGPEIISHFVMHGTSIAEIVKNLIAVLKKKDDDVPN 899

Query: 896  IFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTV 955
            IFLEAL+RAY RH VE+SRSDD SL  KS  +CK+L++RLS T++GAARNKHR DIL+ V
Sbjct: 900  IFLEALRRAYHRHLVELSRSDDTSLASKSVKDCKDLAARLSTTFMGAARNKHRLDILRIV 959

Query: 956  KEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPF 1015
            K+GIDYAF+DAPKQLSFLE AVLHFVS+LPT D+L+ILKDVQ RT+NVN DEDPSGWRP+
Sbjct: 960  KDGIDYAFVDAPKQLSFLEIAVLHFVSRLPTSDVLEILKDVQKRTENVNTDEDPSGWRPY 1019

Query: 1016 KSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRLFDEHSSSEEEDSISASD 1075
             +F+++LREKY+KN+G Q+EKE  +VRRRGRPRK+RNI+GK+LFD+HSSS EEDSISASD
Sbjct: 1020 YTFIDSLREKYSKNDGFQDEKEGTSVRRRGRPRKRRNIQGKKLFDDHSSS-EEDSISASD 1078

Query: 1076 QEVAQDEDDKQEEEEEDEAPLIHSIRSSAKLRALRVSREDNKLQTK----------TTSG 1125
            ++ A+D++++Q EEEE+EAPLI SIRSSAKLR+LRVSRE+NK  T             + 
Sbjct: 1079 ED-ARDDEERQGEEEEEEAPLIQSIRSSAKLRSLRVSREENKGPTNPGDSGRATDAIAAS 1137

Query: 1126 RTSGASG 1132
            RTSGAS 
Sbjct: 1138 RTSGASS 1144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359479838\|ref\|XP_002270509.2\| PREDICTED: cohesin subunit SA-1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255559372\|ref\|XP_002520706.1\| stromal antigen, putative [Ricinus communis] gi\|223540091\|gb\|EEF41668.1\| stromal antigen, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147777089\|emb\|CAN67841.1\| hypothetical protein VITISV_016664 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449435958\|ref\|XP_004135761.1\| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449516549\|ref\|XP_004165309.1\| PREDICTED: cohesin subunit SA-1-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505485\|ref\|XP_003521521.1\| PREDICTED: cohesin subunit SA-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297824911\|ref\|XP_002880338.1\| sister-chromatide cohesion protein 3 [Arabidopsis lyrata subsp. lyrata] gi\|297326177\|gb\|EFH56597.1\| sister-chromatide cohesion protein 3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18407498|ref|NP_566119.1| cohesin complex subunit SA-1/2 [Arabidopsis thaliana] gi|5123720|emb|CAB45374.1| stromalin protein [Arabidopsis thaliana] gi|17380918|gb|AAL36271.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20197313|gb|AAC63652.2| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20197564|gb|AAM15132.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20258987|gb|AAM14209.1| putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|330255826|gb|AEC10920.1| cohesin complex subunit SA-1/2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|21537070\|gb\|AAM61411.1\| putative sister-chromatide cohesion protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1132
TAIR\|locus:2043318		1098	SCC3 "sister-chromatid cohesio	0.965	0.995	0.618	0.0
UNIPROTKB\|F1P9C8		1258	STAG1 "Uncharacterized protein	0.833	0.750	0.251	4.3e-72
UNIPROTKB\|F1MC39		1258	STAG1 "Uncharacterized protein	0.833	0.750	0.251	5.7e-72
UNIPROTKB\|Q6P275		1221	STAG1 "STAG1 protein" [Homo sa	0.833	0.773	0.250	9e-72
UNIPROTKB\|Q8WVM7		1258	STAG1 "Cohesin subunit SA-1" [	0.833	0.750	0.250	1.1e-71
RGD\|1310744		1258	Stag1 "stromal antigen 1" [Rat	0.833	0.750	0.250	1.1e-71
MGI\|MGI:1098658		1258	Stag1 "stromal antigen 1" [Mus	0.833	0.750	0.250	2.5e-71
UNIPROTKB\|F1NYY6		1273	STAG1 "Uncharacterized protein	0.835	0.743	0.250	2.7e-71
UNIPROTKB\|Q9DGN1		1265	stag1 "Cohesin subunit SA-1" [	0.815	0.729	0.243	4.1e-69
UNIPROTKB\|E1B9B0		1284	STAG3 "Uncharacterized protein	0.824	0.726	0.252	7.5e-69

TAIR\|locus:2043318 SCC3 "sister-chromatid cohesion protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3469 (1226.2 bits), Expect = 0., P = 0.
 Identities = 689/1114 (61%), Positives = 831/1114 (74%)

Query:     1 MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRS 60
             MED P   + +    + + + +    +   S   +Q   S Q E   DDF+E RPK KRS
Sbjct:     1 MEDSPQGLKRSRDPDQDQDDDSGEAGKADGSGGENQERSSDQIELDDDDFQETRPKPKRS 60

Query:    61 RASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGA 120
             R    T    Q+    LIEV+KGNG LI + VK+WVERYE     A  ELL+MLF+ACGA
Sbjct:    61 R----THPPQQN----LIEVVKGNGDLISKAVKIWVERYEDSPSLATTELLSMLFQACGA 112

Query:   121 KYYLQGESLDEIXXXXXXXALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQ 180
             KY ++ + LDE        +LVNLAR GE+EDYQSS++KELKNFK+NLVSFW+NL++ECQ
Sbjct:   113 KYSIKDDLLDETDVDDVVVSLVNLARAGELEDYQSSRKKELKNFKENLVSFWNNLIIECQ 172

Query:   181 NGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQ 240
             NGPLFD+VLFDKCMDYIIALSCTPPRVYRQ A+LMGLQLVTSFISVA  LG+QRETTQRQ
Sbjct:   173 NGPLFDRVLFDKCMDYIIALSCTPPRVYRQTATLMGLQLVTSFISVANTLGSQRETTQRQ 232

Query:   241 LNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQ 300
             LNAE KKR +GPRV+SLNKRLS+TH+ IT LEDMMRKIFTGLFVHRYRDID +IRMSCIQ
Sbjct:   233 LNAESKKRADGPRVDSLNKRLSVTHEQITTLEDMMRKIFTGLFVHRYRDIDNDIRMSCIQ 292

Query:   301 SLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360
             SLG+WILSYPS FLQDLYLKYLGWTLNDK+A VRK+S+LALQ LYE+D+NVPTLGLFT+R
Sbjct:   293 SLGIWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKASLLALQKLYEMDENVPTLGLFTQR 352

Query:   361 FSNRMIELADDIDVSVAVCAIGLVKQLLRHQXXXXXXXXXXXXXXXXXXXEIRRAIGELV 420
             FSNRMIE+ADD+D+S AVCAIGLVKQLLRHQ                   EIRRAIGELV
Sbjct:   353 FSNRMIEMADDVDMSAAVCAIGLVKQLLRHQLIPDDDLGPLYDLLIDQPQEIRRAIGELV 412

Query:   421 YDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMK 480
             YDHLIAQKFNSS S L G D+ SSE+H+ RMLQILREFS DPIL +YVIDDVWEYMKAMK
Sbjct:   413 YDHLIAQKFNSSPSSLTGHDDSSSEIHIFRMLQILREFSTDPILCVYVIDDVWEYMKAMK 472

Query:   481 DWKCIISMLLDENPLI-DLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKE 539
             DWKCIISMLLD+NP      D+D+TNLIRLL  S++KAVGE+I+P++DNRK Y++KAQ+E
Sbjct:   473 DWKCIISMLLDQNPRTGSTTDEDSTNLIRLLFVSIRKAVGEKIIPSTDNRKQYHSKAQRE 532

Query:   540 VFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQ 599
             +FENN+++IT AMMKNYP+LLRKFMADKAKV SL++I++ MKLELYSLKR E+SF+  ++
Sbjct:   533 IFENNRKDITVAMMKNYPQLLRKFMADKAKVSSLVEIIIFMKLELYSLKRQEQSFKAAVR 592

Query:   600 LVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDXXXXXXXXXXXXVL 659
             L+ DAFFKHGEKEALRSCVKAI FC++ES+GELQD +R  LKD+ED            V 
Sbjct:   593 LIKDAFFKHGEKEALRSCVKAITFCASESKGELQDFSRGKLKDLEDELLDKITSAIREVK 652

Query:   660 DGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFXXXXXXXXXA 719
             DG+DEYSLLVNLKRLYELQLSK V +ES+++++ + LH FRNLD EV+ F         A
Sbjct:   653 DGNDEYSLLVNLKRLYELQLSKPVLVESMFDEIALTLHNFRNLDEEVICFLLLNMHMYLA 712

Query:   720 WSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILA 779
             W LHSIIN E +SEASL+SL+ KR+TLFEEL YFLN    +EE  + GNQL+ R+C ILA
Sbjct:   713 WYLHSIINCEAISEASLSSLISKRDTLFEELSYFLNG---IEESKKYGNQLSNRICAILA 769

Query:   780 EMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNR 839
             E WCLFR +N+ S KL RLGYCPD   L+KFWKLC +  N SDET++ED NKEYIEETNR
Sbjct:   770 ETWCLFRKSNYDSGKLERLGYCPDSVFLEKFWKLCAEMFNTSDETDEEDENKEYIEETNR 829

Query:   840 DAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLE 899
             D  +IAA KL+A D VPK+YLGPEIISH  MHG  V  I+K+LIT L+KK++D+S I+LE
Sbjct:   830 DVSVIAACKLVASDVVPKDYLGPEIISHLGMHGPGVTGIIKNLITFLRKKEDDISNIYLE 889

Query:   900 ALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGI 959
             +LKRAY R++ E+S   ++S  +K   E +EL+  LSG Y+GAARNK+R +IL  VKEG+
Sbjct:   890 SLKRAYHRYSSELSSGREESRVDKCLEEWRELAGGLSGMYIGAARNKYRLEILSVVKEGV 949

Query:   960 DYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFV 1019
             ++AF DAPKQL FLE A+L F ++L   DI+DI KDVQ R  +VN DEDPSGWRP  +F+
Sbjct:   950 EFAFRDAPKQLLFLEVAILPFATRLSVSDIIDIKKDVQGRIVHVNTDEDPSGWRPCFTFL 1009

Query:  1020 ETLREKYTKNEGIQEEKEAVTVXXXXXXXXXXNIEGKRLFXXXXXXXXXXXXXXXXXXXX 1079
             ETL EK  KNE +Q++KEA  V            E KRLF                    
Sbjct:  1010 ETLEEKCLKNEDLQDDKEAANVRRRGRPRKRPETERKRLFDEQSGSDEDESISGGSDRED 1069

Query:  1080 XXXXXXXXXXXXXXAPLIHSIRSSAKLRALRVSR 1113
                           APLI +IRS+A+ +AL+  R
Sbjct:  1070 KLDED---------APLIETIRSAARRKALKGER 1094

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005694 "chromosome" evidence=IDA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IMP

GO:0051754 "meiotic sister chromatid cohesion, centromeric" evidence=IMP

GO:0000003 "reproduction" evidence=RCA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

UNIPROTKB\|F1P9C8 STAG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MC39 STAG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6P275 STAG1 "STAG1 protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WVM7 STAG1 "Cohesin subunit SA-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1310744 Stag1 "stromal antigen 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1098658 Stag1 "stromal antigen 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYY6 STAG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9DGN1 stag1 "Cohesin subunit SA-1" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B9B0 STAG3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023612001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (1130 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000758001	SubName- Full=Chromosome undetermined scaffold_107, whole genome shotgun sequence; (1274 aa)		•	•	•	0.509
	GSVIVG00028583001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (1205 aa)	•	•	•	•	0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1132
pfam08514		118	pfam08514, STAG, STAG domain	9e-44
COG5537		740	COG5537, IRR1, Cohesin [Cell division and chromoso	4e-25

>gnl\|CDD\|219877 pfam08514, STAG, STAG domain	Back alignment and domain information

 Score =  154 bits (390), Expect = 9e-44
 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 2/117 (1%)

Query: 148 GEVEDYQ-SSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPR 206
            +  DY   SK  +LK F++NL  F   LV++CQ   L+D  L D  + ++ ALS +  R
Sbjct: 1   EDSGDYPLVSKGPKLKKFRENLCEFLSTLVIQCQYSLLYDDNLMDNLISWLTALSSSQVR 60

Query: 207 VYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGP-RVESLNKRLS 262
            +R  A+L+ L+L+T+  +VA  L   +ETTQ+QL AEKKK  +   RV+SLN +  
Sbjct: 61  PFRHTATLVALKLMTALCNVALELSNSKETTQKQLEAEKKKSRDNRARVDSLNSKRK 117

STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version. Length = 118

>gnl\|CDD\|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1132
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	100.0
COG5537		740	IRR1 Cohesin [Cell division and chromosome partiti	100.0
PF08514		118	STAG: STAG domain ; InterPro: IPR013721 STAG domai	99.96
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.07
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	96.41
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.35
COG5537		740	IRR1 Cohesin [Cell division and chromosome partiti	96.19
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.02
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	95.86
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.31
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.89
PRK09687		280	putative lyase; Provisional	94.46
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	93.85
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	93.78
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	93.71
PRK09687		280	putative lyase; Provisional	93.68
KOG0414		1251	consensus Chromosome condensation complex Condensi	93.21
PTZ00429		746	beta-adaptin; Provisional	92.88
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	92.22
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.64
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.69
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	90.63
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	90.33
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	90.3
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	89.93
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	87.55
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	87.4
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	86.64
KOG2025		892	consensus Chromosome condensation complex Condensi	86.47
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	85.21
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	84.31
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	83.48
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	83.43
KOG2259		823	consensus Uncharacterized conserved protein [Funct	82.68
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	82.11
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	82.0
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	80.66
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	80.01

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=1.9e-171  Score=1552.43  Aligned_cols=915  Identities=30%  Similarity=0.483  Sum_probs=818.3

Q ss_pred             cchhhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCeecCccccCCCChhHHHHHHHHHHhcCCcc
Q 001174           72 SIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE  151 (1132)
Q Consensus        72 ~~~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~a~Gc~~~It~~~~~~~d~~~ii~~l~e~~~~~~~~  151 (1132)
                      .+.++||.+|+.++..++++|++|++.|++|++.||++||||||+||||++.||++|++++|+.+++..|++.|.++..+
T Consensus        78 ~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es~  157 (1048)
T KOG2011|consen   78 FDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERESG  157 (1048)
T ss_pred             cChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhhc
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999986677


Q ss_pred             ccc-ccccccchhHHHHHHHHHHHHHHhhcc-CCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 001174          152 DYQ-SSKRKELKNFKDNLVSFWDNLVVECQN-GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKM  229 (1132)
Q Consensus       152 dy~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~-~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~  229 (1132)
                      ||| .++||.||+||.|||.||.+||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||+||.+
T Consensus       158 DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~  237 (1048)
T KOG2011|consen  158 DYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALN  237 (1048)
T ss_pred             cCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            886 567889999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHcccCC-CccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhh
Q 001174          230 LGAQRETTQRQLNAEKKKRVE-GPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILS  308 (1132)
Q Consensus       230 l~~~~~~~qRQleaEk~K~~~-~~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~  308 (1132)
                      |+.+.+++|||||+|++|.+. +.|+++|..+++++|+++++|++||++||++|||||||||+|+||++||++||.||.+
T Consensus       238 Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~  317 (1048)
T KOG2011|consen  238 LSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS  317 (1048)
T ss_pred             HHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh
Confidence            999999999999999988654 4599999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHH
Q 001174          309 YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLL  388 (1132)
Q Consensus       309 yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~  388 (1132)
                      ||++|++++||||+||+|||++++||+.||++|++||.++++.++|++||+|||+|||||| |+|.+|+|.|++|+..+.
T Consensus       318 yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~~  396 (1048)
T KOG2011|consen  318 YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCLL  396 (1048)
T ss_pred             ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 888888888888877777


Q ss_pred             h--cCCCCCCChhhHHhhhcCCChHHHHHHHHHHHHHHHHhhhcCcccCCCC-CCCCchhhHHhHHHHHHHhhcCCCchh
Q 001174          389 R--HQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKG-KDNDSSEVHLGRMLQILREFSADPILS  465 (1132)
Q Consensus       389 ~--~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~f~~~~~~~  465 (1132)
                      .  .|+|+++||..||.||||.+|++|+|||+|++.++++...+....+++. .....+...+..++.++.++ ..|.|+
T Consensus       397 ~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~-~l~~~~  475 (1048)
T KOG2011|consen  397 LSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEES-ELHQHA  475 (1048)
T ss_pred             HhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhh-hhhhhH
Confidence            7  6999999999999999999999999999999999998654331111111 11122233445556666654 346788


Q ss_pred             hHHHHhhcc-ccccCCChHHHHHHHcCCCC--CCCCCchhhHHHHHHHHHHHHHH-hccCCCCCCCCCCccchhhhhhhh
Q 001174          466 IYVIDDVWE-YMKAMKDWKCIISMLLDENP--LIDLNDDDATNLIRLLSASVKKA-VGERIVPASDNRKPYYNKAQKEVF  541 (1132)
Q Consensus       466 ~ylVDsLwd-~~~~lkDWe~m~~lLL~D~~--~~~L~d~~e~~LieiL~asVrqa-~ge~~~~~~~~rk~~~~~~~k~~~  541 (1132)
                      +|+||++|+ ....++||+||.++||....  +..+++.+++.|+|+|++++||+ .|++|+|+.+++|...+.++.+.+
T Consensus       476 ~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~~~~  555 (1048)
T KOG2011|consen  476 AYLVDSLFDSLDFLLKDWACMTSLLLDKLLPQGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKEDADL  555 (1048)
T ss_pred             HHHHHHHHHhhHHHhcccHHHHHhhcccccchhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHHHHH
Confidence            999999999 56789999999999998853  34789999999999999999975 599999998889988899999899


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 001174          542 ENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAI  621 (1132)
Q Consensus       542 ~~~~~~iT~~li~~LP~LL~Ky~aD~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al  621 (1132)
                      .+++.++|+++++.+|+|+.||.+|.+++++|++||+||+++.|+.+|++++|.++++++..++.+|.+.+||++|+++|
T Consensus       556 ~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~~~~  635 (1048)
T KOG2011|consen  556 EEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCDKPY  635 (1048)
T ss_pred             HHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchh--hHHHHHhhhHhHHHHHHHHHHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhh
Q 001174          622 KFCSAESQG--ELQDSARKNLKDVEDKLIAKLKSAIKA-VLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT  698 (1132)
Q Consensus       622 ~~L~~~~~~--~l~~~a~~~l~~L~d~lv~~l~~~~~~-~~~~~~~~~ll~~L~Rl~~l~~~~~l~~~~l~~~l~~ll~~  698 (1132)
                      +++|.++..  ..+++++.++.++.++.++.....+.. ..++++.|+++++|+|++.|++.+++..|++|+.+...++.
T Consensus       636 ~~l~~~els~~~~~di~r~~~~dl~~~~~~~il~~f~~~~~~~~~~~~~l~~lk~~~~~q~~~~~~~~~l~~~l~~~l~e  715 (1048)
T KOG2011|consen  636 EFLCYEELSKITDKDIERSNLYDLFDTKYDKILDIFLLFIRDEDDEYAVLSRLKRLASFQNSIDLLKWDLFKALAESLHE  715 (1048)
T ss_pred             HHHhhHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            999998443  447888887655555555444333322 33778899999999999999999999999999999999986


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHhhcccccccccCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhhhhhhHHH
Q 001174          699 --FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCT  776 (1132)
Q Consensus       699 --~~~l~~e~v~~al~~~~~~l~W~l~~l~~~~~~~~~~~~~L~~~r~~f~~~l~~~L~~~~~~~~~~~~~~~~~c~~~~  776 (1132)
                        .+++|..++..+++++++.+.|.+..+..+..+.++.+..|+.+++.++..|..++.-....++  +++       +.
T Consensus       716 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~e~l~~f~~~~~~~~~l~~~~~~~~~~ev~--e~~-------~~  786 (1048)
T KOG2011|consen  716 RINRDPQRCIILFKLQLLGNKLTYDLVKIKNGEVCGAEFLSELRSRSDSMFNLVDEYLEEVNMEVE--EQA-------VR  786 (1048)
T ss_pred             hhccCchhhHHHHHHHHhhhhhhhhhhhhccCCCccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHH--HHH-------HH
Confidence              4678999999999999999999999996566778899999999999999999999976322222  344       44


Q ss_pred             HHHHHHHHhhccCCCC--cccccCcccCCHHHHHHHHHHh-hHhcccCCCCchhhhhHHHHHH-hhcHHHHHHHHHHHhh
Q 001174          777 ILAEMWCLFRMTNFSS--TKLSRLGYCPDIPVLQKFWKLC-EQQLNISDETEDEDVNKEYIEE-TNRDAVMIAAAKLIAI  852 (1132)
Q Consensus       777 ~l~Dl~~lF~~~~~~~--~~l~~L~y~p~~~~~~~l~~~~-~~~~~~~d~~~d~~~~~e~ie~-~~RR~~La~~cKLi~~  852 (1132)
                      ..||++++|+.+...+  ..++|++|.|+..+++.+.+|+ .++|...++++  ++...+||. +++|+++|+|||||+|
T Consensus       787 ~~~~~Lii~~~~~~~~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~--~~~~~~Ie~~~~~r~~~a~~~~li~~  864 (1048)
T KOG2011|consen  787 LGCDRLIIFKVQDMEGKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSEN--TNECLKIEQLHKKRKLLASLAKLILE  864 (1048)
T ss_pred             HHhhHHHHhhhhhcccchhccccceechHHHHHHhhhhHHHHHhhhhhcccc--hHHHHHHHHHHHhhhHHhHHHHHHHc
Confidence            4666678888888764  3589999999999999997755 56665554433  223457887 5799999999999999


Q ss_pred             CCCCCccccccccccccccCCChHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHhHHHH
Q 001174          853 DSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKD-EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKEL  931 (1132)
Q Consensus       853 ~vvp~~~~Aa~I~khY~k~y~d~gDIIK~tl~k~r~~~-~~~a~~l~~sL~~ly~~~~~~~~~~~~~~~~s~~f~~ikeL  931 (1132)
                      |++||+ +|++|||||++||++||||+|+|++++|+++ .+||+++.++|+++|.                   .++|+|
T Consensus       865 ~~~~~~-~a~~~fK~~~~~~~~~gd~~~~~l~k~r~i~~~~~~~~l~~~l~~~~~-------------------~~~~~l  924 (1048)
T KOG2011|consen  865 NKLPMM-EASDIFKMYEKFYNDYGDIIKETLSKAREIDKSEFAKTVDLSLETLFD-------------------TEIKEL  924 (1048)
T ss_pred             ccccHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hHHHHH
Confidence            999995 9999999999999999999999999999996 9999999999999996                   689999


Q ss_pred             HHHhhcccCCcccccchHHHHHHHHhhccccccc-------cccccchHHhhHhhhccCCCcccHHHHHHHHHhhccCCC
Q 001174          932 SSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLD-------APKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVN 1004 (1132)
Q Consensus       932 ArRfaltf~G~d~~K~R~ai~~lHk~GI~FAf~~-------~P~nL~FLei~L~eFs~KLl~qDk~~v~~yl~~~~~~~~ 1004 (1132)
                      |+|||++| |+|++|+|+||++|||+||.|||..       +|||+.|||| ++|||+|  +|||+++++||+++.++++
T Consensus       925 a~r~~~~~-~~~~~~~r~ai~~~~k~~~~~~~~~~~~~~~~~~p~~~flei-l~e~s~k--~Qdkk~~~~~~~k~~~~~~ 1000 (1048)
T KOG2011|consen  925 AKRLALTF-GLDQLKNRFAIAVLHKKGILFALFKKDDDPSMEPPNLAFLEI-LSEFSNK--TQDKKAVLSYLEKIETDHM 1000 (1048)
T ss_pred             HHHHHhhc-CHHHHhhHHHHHHHHhhcccceeecCCCCccCCCCCchHHHH-HHHhcch--hhhhhhHhhHHHhhccccC
Confidence            99999999 9999999999999999999999962       7999999999 7999999  9999999999999999999


Q ss_pred             CCCCCCCcccHHHHHHHHhh
Q 001174         1005 MDEDPSGWRPFKSFVETLRE 1024 (1132)
Q Consensus      1005 ~~~~~~~W~Pl~~Yr~sL~~ 1024 (1132)
                      +.++ +.|.|+.+|+|||.+
T Consensus      1001 ~~~~-~~~~p~~~~~~~l~~ 1019 (1048)
T KOG2011|consen 1001 PTSR-DPWIPLTSYLNSLEE 1019 (1048)
T ss_pred             CCCC-CCCcccccccccccc
Confidence            8877 999999999999966

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1132
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	9e-05
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 92.2 bits (228), Expect = 5e-19
 Identities = 112/718 (15%), Positives = 210/718 (29%), Gaps = 245/718 (34%)

Query: 270 DLEDMMRKIFTGLFVHRYRDI--DPNIRMSCIQSLGVWIL------SYPSFFLQDLYLKY 321
           D++DM + I +         I    +  +S    L  W L          F  + L + Y
Sbjct: 37  DVQDMPKSILSK---EEIDHIIMSKD-AVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINY 91

Query: 322 LGWTLNDKSASVRKSSVLALQNLYEVD----DNVPTLGLFTERFSNR----------MIE 367
             + ++      R+ S++    + + D    DN      F +   +R          ++E
Sbjct: 92  -KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLKLRQALLE 146

Query: 368 LADDIDVSV-------------AVCAIGLVKQL---------LRHQLLPDDDLGPLYDLL 405
           L    +V +              VC    V+           L++   P+  L  L  LL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 406 ID-DPPEIRRAIGELVYDHL--IAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADP 462
              DP    R+      DH   I  + +S Q+ L             R L   + +    
Sbjct: 207 YQIDPNWTSRS------DHSSNIKLRIHSIQAEL-------------RRLLKSKPYEN-- 245

Query: 463 ILSIYVIDDVW--EYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGE 520
              + V+ +V   +   A  +  C I        L+       T+ +         A   
Sbjct: 246 --CLLVLLNVQNAKAWNAF-NLSCKI--------LLTTRFKQVTDFL--------SAATT 286

Query: 521 RIVPASDNRKPYYNKAQKEVF----ENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDI 576
             +    +         K +     +   +++ R ++   PR L           S+I  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----------SIIA- 334

Query: 577 VMHMKLELYSLKRDEKS-FETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDS 635
                       RD  + ++    +  D          + S +  ++   AE +      
Sbjct: 335 ---------ESIRDGLATWDNWKHVNCDKL-----TTIIESSLNVLE--PAEYRKMFDRL 378

Query: 636 A--RKNLKDVEDKLIAKL-----KSAIKAVLDGDDEYSLLV-----NLKRLYELQLSKAV 683
           +    +   +   L++ +     KS +  V++   +YSL+      +   +  + L   V
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 684 PIESLYEDLVMILH--------TFRNLDNEVVSFLLLNLYLY--LAWSLHSIINAETVSE 733
            +E+ Y      LH          +  D++ +    L+ Y Y  +   L +I + E    
Sbjct: 438 KLENEYA-----LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE---- 488

Query: 734 ASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSST 793
                    R TLF  +  FL+                             FR   F   
Sbjct: 489 ---------RMTLFRMV--FLD-----------------------------FR---FLEQ 505

Query: 794 KLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAID 853
           K+                       +I +  +     K YI +                D
Sbjct: 506 KIRHDST------------AWNASGSILNTLQQLKFYKPYICDN---------------D 538

Query: 854 SVPKEYLGPEIISHFVM-HGTNVAEIVKHLITV---LKKKDEDVSTIFLEALKRAYQR 907
              +  +    I  F+     N+    K+   +   L  +DE    IF EA K+  QR
Sbjct: 539 PKYERLV--NAILDFLPKIEENLI-CSKYTDLLRIALMAEDE---AIFEEAHKQV-QR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1132
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.6
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.48
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	96.43
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.36
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.29
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	96.21
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.21
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.18
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.83
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	95.7
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.46
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.43
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	95.18
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	95.1
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	94.96
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	94.84
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	94.74
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.5
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	94.34
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.25
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	94.1
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	94.04
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.07
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	92.79
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	92.48
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	92.47
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	92.45
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	92.34
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	91.95
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	91.88
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	91.79
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	91.53
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.26
1qgr_A		876	Protein (importin beta subunit); transport recepto	90.92
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	90.84
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	90.69
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	90.68
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	90.45
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	89.64
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	89.58
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	88.99
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	88.89
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	88.78
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	87.59
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	87.17
1qgr_A		876	Protein (importin beta subunit); transport recepto	86.75
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	86.39
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	85.27
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	83.58
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	83.07
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	82.1
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	82.0
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	81.23
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	81.15
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	80.55
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	80.48

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

Probab=96.60  E-value=0.012  Score=60.72  Aligned_cols=110  Identities=22%  Similarity=0.261  Sum_probs=83.3

Q ss_pred             cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174          288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE  367 (1132)
Q Consensus       288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe  367 (1132)
                      .|-+|.+|..++..||..-        ++..+..|--+|.|+++.||..++.+|..+-. +           ...+.|++
T Consensus        60 ~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~~  119 (211)
T 3ltm_A           60 KDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-E-----------RAVEPLIK  119 (211)
T ss_dssp             TCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G-----------GGHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H-----------HHHHHHHH
Confidence            5678899999999998642        34567777788899999999999999887742 1           13456777


Q ss_pred             hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174          368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD  422 (1132)
Q Consensus       368 M~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~  422 (1132)
                      +..|.|..|+..|+..|..+-     .++-+..+..++-|.++.||.+|..-+..
T Consensus       120 ~l~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~  169 (211)
T 3ltm_A          120 ALKDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDEDGWVRQSAADALGE  169 (211)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            778889999999998888773     23445677777878888999888876653

PyMOL of 3ltm

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1132
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 0.001
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 45/249 (18%)

Query: 263  MTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYL 322
            ++  ++  L+  +  I+  L  H     +   R    + LG   L  P   L  L     
Sbjct: 914  ISSASVVGLKPYVENIWALLLKH-CECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY-- 970

Query: 323  GWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIG 382
               L   S+  R S V A++    + D+   +    +      ++  +D D++V   A+ 
Sbjct: 971  ---LISGSSYARSSVVTAVKFT--ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALV 1025

Query: 383  LVKQLLRH----------QLLPDD--------------DLGPLYDLLIDDPPEIRRAIGE 418
                   +           +LP                ++GP +   +DD  +IR+A  E
Sbjct: 1026 TFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGP-FKHTVDDGLDIRKAAFE 1084

Query: 419  LVYDHL--------IAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVID 470
             +Y  L        I +  N  + GLK    D  ++ +   L ++R  +  P   +  +D
Sbjct: 1085 CMYTLLDSCLDRLDIFEFLNHVEDGLK----DHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1140

Query: 471  DVWEYMKAM 479
             + E ++A 
Sbjct: 1141 RLVEPLRAT 1149

PyMOL of d1u6gc_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1132
d1b3ua_		588	Constant regulatory domain of protein phosphatase	96.53
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.42
d1b3ua_		588	Constant regulatory domain of protein phosphatase	96.4
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.32
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	94.24
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	94.12
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	94.06
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.3
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	92.7
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	92.53
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.15
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.91
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.22
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	89.8
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	88.67
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	87.96
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	85.95
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	85.9
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	83.47
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	81.52
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	80.36
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	80.22

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0036  Score=71.22  Aligned_cols=132  Identities=11%  Similarity=0.084  Sum_probs=94.8

Q ss_pred             ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174          287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI  366 (1132)
Q Consensus       287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV  366 (1132)
                      -.|-.+.+|..+++.++.-...+...|+.+....++...|.|.+..||..++++|..|...-    +-..+...+-+.++
T Consensus       411 ~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~----~~~~~~~~i~~~l~  486 (588)
T d1b3ua_         411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF----GKEWAHATIIPKVL  486 (588)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----CHHHHHHHTHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh----CcHHHHHHHHHHHH
Confidence            36778888888888888877777777778888888888888888888888888888886421    11223445667778


Q ss_pred             hhcccCchhHHHHHHHHHHHHHhc---CCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174          367 ELADDIDVSVAVCAIGLVKQLLRH---QLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD  422 (1132)
Q Consensus       367 eM~~D~D~~Vav~AI~Ll~~l~~~---~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~  422 (1132)
                      +|..|.++.+|..|+..+..+.+.   +...++-...+.++.-|..|.||.+|+..+..
T Consensus       487 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~  545 (588)
T d1b3ua_         487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK  545 (588)
T ss_dssp             HTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            888888888888888887777663   11112223345566668888888888877653

PyMOL of d1b3ua_

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure