Citrus Sinensis ID: 001176
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1132 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.965 | 0.966 | 0.671 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.970 | 0.981 | 0.658 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.984 | 0.982 | 0.632 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.960 | 0.961 | 0.652 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.963 | 0.984 | 0.615 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.277 | 0.231 | 0.270 | 2e-17 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.524 | 0.389 | 0.216 | 4e-14 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.433 | 0.291 | 0.221 | 5e-12 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.554 | 0.499 | 0.204 | 9e-12 | |
| Q12788 | 808 | Transducin beta-like prot | yes | no | 0.421 | 0.590 | 0.209 | 7e-11 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
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Score = 1549 bits (4010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 759/1130 (67%), Positives = 897/1130 (79%), Gaps = 37/1130 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP- 239
WQHQLCKNPRPNPDIKTLF DHSC P NGAR P P NNPL+G IPKAG FPP+GAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGP-PNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 240 --VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 298 ADSDHLMKRIR-TGQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 345
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 525
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705
V+ ++N IKI+ANSDG+RLL E + + SSKP IN++ A+ +A A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSE---------SSKP-AINSIAAAAAAAATSA- 706
Query: 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 764
DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 707 --GHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 765 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 825 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 884
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1003
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1063
+ W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P ++
Sbjct: 1003 MKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPA-SL 1060
Query: 1064 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1113
S++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1061 SNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1542 bits (3993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/1147 (65%), Positives = 895/1147 (78%), Gaps = 48/1147 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPV 240
WQHQLCKNPRPNPDIKTLF DHSC N AR P P NNPL+G +PKA FPP+GAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 V---SPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 298 ADSDHLMKRIR-TGQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 345
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 525
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705
V+ +DN IK++ANSDG+RLL +E + + SSKP IN++ P
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSE---------SSKP-AINSI-----------P 696
Query: 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 764
+ERP VSI + D +VDVKP + E+ DK K W++ ++ +PSQ ++LRLP
Sbjct: 697 MVERP---ASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 765 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR +RN +GKATA++ PQ WQP SG
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 825 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 884
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 813 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1003
LC+W+ D WEK KS+ +Q P GR + + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1063
+ W +++ API+ A +SCD L+Y F D I VF + LR RCR+ PSAY+P ++
Sbjct: 992 MKQWPVRES-AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPA-SL 1049
Query: 1064 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPP 1123
S++ HPLVIA HP E N A+G+SDG VH+ EP ++E KWG P +NG + ++ P
Sbjct: 1050 SNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPS 1109
Query: 1124 LTGQPSE 1130
+ S+
Sbjct: 1110 VGASASD 1116
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1491 bits (3860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/1147 (63%), Positives = 891/1147 (77%), Gaps = 32/1147 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM++FED V AGEWD+VE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD++D AKAV+ILVK+LKVFS+FNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKL FPS K+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPV 240
WQHQLCKNPRPNPDIKTLF DH+C NGA P PT N L+G +PK G FPP+GAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCG-HPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 241 VSPSPG----AIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKH--PRTP-TGMTGM 293
P+P ++AGWM + PS+ HP+++AGP G P+SAV LK PR+P T M
Sbjct: 240 -QPTPAPLTTSLAGWMPN--PSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSM 296
Query: 294 DYQSADSDHLMKRIRT-GQSD----------EVSFAGVAHTPNVYSQDDLTKTVVRTLNQ 342
DYQ+ADS+ ++KR R G SD V++ G +H YS DDL K V R L+Q
Sbjct: 297 DYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQ 356
Query: 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 402
GS + SMDFHP QQT+LLVGTN+GDI++WEVGSRE+L + FKVWD++ ++ LQ +L +
Sbjct: 357 GSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLAS 416
Query: 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 462
+ +VNR VW PDG +LGVA+SKHIVH+Y+Y+ +LR HLEIDAH G VND+AF+ PN
Sbjct: 417 EYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPN 476
Query: 463 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522
+QLC+VTCG+DK IKVWD V G K +TFEGHEAPVYSVCPH KE+IQFIFSTA+DGKIKA
Sbjct: 477 QQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKA 536
Query: 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582
WLYD +GSRVDYDAPG CT MAY ADGTRLFSCGTSKEGES +VEWNESEGA+KRTY G
Sbjct: 537 WLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLG 596
Query: 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642
KRS+GVVQFDT +N+FL AGDEFQ+KFWDMD++++L++ A+GGLP+SP LR NKEG+
Sbjct: 597 LGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGT 656
Query: 643 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 702
LLAV+T+DNGIKILAN++G R+L + R +D +R P ++ P+ +G +++
Sbjct: 657 LLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPI----VGTFGTPNSS 712
Query: 703 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 762
+L +R P S++ L D L DVKPR+A+D +K K+W++ +IS+ SQ++ LR
Sbjct: 713 TGMSLSMGERSGPVASVTGLNG-DNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLR 771
Query: 763 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 822
LPD++ ++VV+LIYTNSG ++LALA NA HKLWKWQ++ERN GKA +NV PQLWQP S
Sbjct: 772 LPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSS 831
Query: 823 GTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAAT 882
G LMTND E E+ C ALSKNDSYVMSASGGK+SLFNMMTFK MT FM+PPPAAT
Sbjct: 832 GVLMTNDTREGN-KEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942
LAFHPQDNNIIAIGM+DSS+QIYNVRVDEVK+KLKGHQ R+TGLAFS LN LVSSGAD
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 943 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KL 1001
+QLC+WS+D WEK S+ IQ P+G + T+VQFH DQ H+LVVH SQ+++Y++ KL
Sbjct: 951 SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010
Query: 1002 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1061
E + W PK++ ++ A+YSCD +YA F DG++ + A TL+ +CRIGP++Y+P+
Sbjct: 1011 ENMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSN 1069
Query: 1062 AVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSN 1121
S+ +P +A HPSEPNQ A+G++DG VHV+EP E KWG + +NG PS SS
Sbjct: 1070 P--SSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSA 1127
Query: 1122 PPLTGQP 1128
P QP
Sbjct: 1128 PGSDQQP 1134
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1464 bits (3791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/1116 (65%), Positives = 874/1116 (78%), Gaps = 29/1116 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR P N P V + + F P+G H GP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLP-VAAVARPSNFVPLGVHGGP 238
Query: 240 VVS-----PSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 292
S P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 293 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 351
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPP--ASLDDLPRNVVSTIRQGSVVISMDF 355
Query: 352 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 471
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 472 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 531
DDK+IKVWD ++G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 532 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 591
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 592 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 652 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIG-KIEHMD 706
Query: 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AAS 770
G PA I+ KPR + VDK K + +I DP+Q + + +PDS + S
Sbjct: 707 AGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVS 766
Query: 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 830
KV RL+YTNSG+ +LAL SN V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND+
Sbjct: 767 KVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDV 826
Query: 831 NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 890
E+ E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQD
Sbjct: 827 PENP--EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQD 884
Query: 891 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
NNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 885 NNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTA 944
Query: 951 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSP 1009
D WEK KS IQ P G+ VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W P
Sbjct: 945 DSWEKKKSSAIQLPPGKAP--VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVP 1002
Query: 1010 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069
++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P +S
Sbjct: 1003 QEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIF 1062
Query: 1070 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1105
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1063 PQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1385 bits (3584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/1130 (61%), Positives = 852/1130 (75%), Gaps = 39/1130 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN K+F+++V AGEWD+VE YL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDRQ++AKAVEILV+DL+VFS+FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP+ +SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH--- 237
WQHQLCKNPRPNPDIKTLFTDH+C NG P N P V + K +P +G H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCT-LPNGPLAPSAVNQP-VTTLTKPAAYPSLGPHVPF 238
Query: 238 -GPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGM-DY 295
+ + GA+A WM++ S + + P QP + + LK PRTP G+ DY
Sbjct: 239 PPGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 296 QSADSDHLMKRIRTGQS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 353
Q+ D + LMKR+R S +EV++ A P +S +DL L+QGS V SM+F+P
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPAPRQQAP--WSLEDLPTKAALALHQGSTVTSMEFYP 355
Query: 354 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413
Q T+LLVG+ G+I+LWE+ +RERL +PFK+WD+S S Q + + ISV R W
Sbjct: 356 MQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAW 415
Query: 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473
PDG +GVAF+KH++ LY ++ +LRQH EIDAHVG VND+AFA+PN+QLC++TCGDD
Sbjct: 416 SPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDD 475
Query: 474 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 533
K+IKVWD V+GRK +TFEGH+APVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 476 KLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 534
Query: 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 593
YDAPG WCT M YSADGTRLFSCGTSK+G+S LVEWNESEG+IKRTY F+K+ GVVQF
Sbjct: 535 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQF 594
Query: 594 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653
DT++N FLA G++ QIKFWDM+N+N+LT+ DA+GGLPA P LRFNK+G+LLAVTT+DNG
Sbjct: 595 DTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGF 654
Query: 654 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 713
KILAN G R LR +E A + R P + + P P ++V+ + +RG
Sbjct: 655 KILANPAGFRSLRAMETPASETMRTPVD-FKAVP-----GAPVASVNCKV-------ERG 701
Query: 714 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KV 772
P L +D S K R+ + DK KSW++ +I DPSQ LPD+ +S KV
Sbjct: 702 SPVRHSQMLNGVDPS-----KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 773 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 832
V+L+YTNSG +LAL SN + +LWKW E+NPSGKATA V PQ WQP SG LMTND++
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSG 816
Query: 833 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 892
E +A CIALSKNDSYVMSA+GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQDNN
Sbjct: 817 VN-LENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
+IAIGMEDS++ IYNVRVDEVK+KLKGHQ RITGLAFS LN LVSSGADAQ+C WSID
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 953 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKD 1011
WEK KS IQ PAG+ + G+T+VQFH DQ +LVVHE+Q++V+D SK+EC R W P+D
Sbjct: 936 WEKRKSVAIQMPAGKAAN--GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 1012 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL 1071
+L APISSA+Y+C+ L+Y F DG IGVFDA++LR RCRI PSAY+P + PL
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ---GNQGLSPL 1050
Query: 1072 VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSN 1121
V+A HP +PNQ A+G++DG+V ++EP++ E KWG P + PS +SN
Sbjct: 1051 VVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTSN 1100
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 149/359 (41%), Gaps = 45/359 (12%)
Query: 305 KRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGT 363
+R+ +G D HT ++ D + T +TL GS+V+S+ F P Q V +
Sbjct: 938 QRVASGSDD--------HTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQR---VAS 984
Query: 364 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423
GD K K+WD ++ + L SV + PDG +
Sbjct: 985 GSGD--------------KTIKIWDTASGTC---TQTLEGHGGSVWSVAFSPDGQRVASG 1027
Query: 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483
+ ++ +G Q LE H G V + F+ P+ Q + + DD IK+WD V+
Sbjct: 1028 SDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-PDGQR-VASGSDDHTIKIWDAVS 1082
Query: 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 543
G T EGH V+SV Q + S +IDG IK W + G W
Sbjct: 1083 GTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHS 1140
Query: 544 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 603
+A+S DG R+ S S +G + W+ + G +T G + V F R +
Sbjct: 1141 VAFSPDGQRVAS--GSIDGTIKI--WDAASGTCTQTLEG-HGGWVQSVAFSPDGQRVASG 1195
Query: 604 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 662
+ IK WD + T++ GG S + F+ +G +A +SDN IKI + G
Sbjct: 1196 SSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTASGT 1252
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 157/725 (21%), Positives = 273/725 (37%), Gaps = 131/725 (18%)
Query: 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 403
+V+++ F P + + G + G + WE + +E L K W
Sbjct: 866 SVLTVAFSPDGK-LFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 463
VN + DG ML V L+ + L+ H V + F+ PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFS-PNS 960
Query: 464 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
L + + D+ +++WD+ +G Y F+GH VYSV + S+ + + + D ++ W
Sbjct: 961 -LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 524 LYDYLGSRVDYDAPGNWCTM--MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581
D S+ Y G+ + + +S+DG L S + + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641
G VV F + GD+ ++ WD+ + N L T+ + +RF
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQG-----YTSWVRF---- 1121
Query: 642 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 701
+ S NG+ LAN +++R+ + ISSK G + V+A
Sbjct: 1122 ----LVFSPNGVT-LANGSSDQIVRLWD-------------ISSKKCLYTLQGHTNWVNA 1163
Query: 702 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDV-KPRVAEDVDKIKSWRIPDISDPSQIKA 760
P +++S RL D+ + + SW + +P
Sbjct: 1164 VAFS--------PDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDG--- 1212
Query: 761 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP----Q 816
S ++ + VRL NS L H W NP G A+ + +
Sbjct: 1213 -STLASGSSDQTVRLWEINSSKCLCTFQG---HTSWV-NSVVFNPDGSMLASGSSDKTVR 1267
Query: 817 LWQPPSGTLM------TNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFK 869
LW S + TN +N +A + + S + S SG + V L+ + + K
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNS----------VAFNPDGSMLASGSGDQTVRLWEISSSK 1317
Query: 870 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 929
+ F + + F P D ++A G +D +V+++++ E GH N + + F
Sbjct: 1318 CLHTFQGHTSWVSSVTFSP-DGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF 1376
Query: 930 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989
SP L S D + +WSI + L + +Q HN+ +V
Sbjct: 1377 SPDGAILASGSGDQTVRLWSISSGKCLYT------------------LQGHNNWVGSIVF 1418
Query: 990 H-ESQISVYDSKLECSRSW--SPKDALPA------PISSAIYSCDGLLVYAGFCDGAIGV 1040
+ + S + R W S + L + S +S DGL++ +G D I +
Sbjct: 1419 SPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKL 1478
Query: 1041 FDAET 1045
+D +T
Sbjct: 1479 WDVKT 1483
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 130/588 (22%), Positives = 225/588 (38%), Gaps = 97/588 (16%)
Query: 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 462
DA SV+ + PDG + S + L+ + L+ I H VN++ F+
Sbjct: 1114 DAVYSVS---FSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDG 1167
Query: 463 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522
K L + D IK+WD +G+ T GH A V +V Q I + + D +K
Sbjct: 1168 KNLA--SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKL 1223
Query: 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582
W + +W +++S DG L S K + W ++G + +T G
Sbjct: 1224 WHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT----IKLWRIADGKLVKTLKG 1279
Query: 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642
S+ V F + +A + IK W+ + + T GG+ A + F + +
Sbjct: 1280 -HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VNFLPDSN 1335
Query: 643 LLAVTTSDNGIK-----------ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 691
++A + DN I+ +LA + GV + L ++ I
Sbjct: 1336 IIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSI----------------IA 1379
Query: 692 ALGPASNVS------AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 745
G N+ ++ TL ++ +S + G + S D +K
Sbjct: 1380 TAGADGNIQLWHSQDGSLLKTLP-GNKAIYGISFTPQGDLIASANAD---------KTVK 1429
Query: 746 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW-----KWQR 800
WR+ D +K L D+ +V ++ ++ G +L + + + KLW K+++
Sbjct: 1430 IWRV---RDGKALKTLIGHDN----EVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKK 1482
Query: 801 TER-----------NPSGK----ATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CIA 844
T + +P GK A+A+ +LW SG L+ +S P +
Sbjct: 1483 TLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLI-----KSLPAHNDLVYSVN 1537
Query: 845 LSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 903
+ + S + S S K V L+ ++ F +F P D IA ED +V
Sbjct: 1538 FNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKTV 1596
Query: 904 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 951
+I+ + + T L HQ + FSP L+S D +W D
Sbjct: 1597 KIWQID-GHLLTTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFD 1643
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 139/681 (20%), Positives = 260/681 (38%), Gaps = 53/681 (7%)
Query: 302 HLMKRIRTGQSDEVSFAGVAHTPNV--YSQDDLTK------TVVRTLNQGSNVMSMDFHP 353
H++ R+R E +AG + N+ ++Q DL+ TV + QG N+ +DF
Sbjct: 572 HILSRLRGKSPQETGYAG-GNVLNLLHHAQVDLSGYDFSGLTVWQAYLQGVNLHDVDFAN 630
Query: 354 QQQTILLVGTNVGDISLWEVGSRERLAHKP-----FKVWDISAASMPLQNALLNDAAISV 408
+ + +G+I +L +VW++ + + L + + V
Sbjct: 631 SDLSCCVFTETLGNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLL---ICRGHSNWV 687
Query: 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468
V+ PDG +L + V L++ ++ + H V +AF HP+ + +
Sbjct: 688 RFVVFSPDGEILASCGADENVKLWSVRDGVCIK---TLTGHEHEVFSVAF-HPDGET-LA 742
Query: 469 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528
+ DK IK+WD+ G T GH V C + S+A D IK W
Sbjct: 743 SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CVAFSPDGNTLASSAADHTIKLWDVSQG 800
Query: 529 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588
+ W +A+SADG L S G+ + WN G +TY G
Sbjct: 801 KCLRTLKSHTGWVRSVAFSADGQTL----ASGSGDRTIKIWNYHTGECLKTYIGHTNSVY 856
Query: 589 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648
+ ++ +GD IK WD + T+ S + F+ +G LA +
Sbjct: 857 SIAYSPDSKILVSGSGDR-TIKLWDCQTHICIKTLHGHTNEVCS--VAFSPDGQTLACVS 913
Query: 649 SDNGIKILANSDGVRLLRMLEGR---AMDKNRCPSEPI-----SSKPLTINALGPASNVS 700
D ++ L N + L+ G A+ P I + K + + +S
Sbjct: 914 LDQSVR-LWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYIS 972
Query: 701 AAIAPT--LERPDRGPPAVSISSLGTIDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQ 757
+ T + P + +++S T RL ++ + + + + W + P
Sbjct: 973 SLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQG 1032
Query: 758 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 817
++ + +A V+L ++G L L+ ++ L + A+A+ + +L
Sbjct: 1033 ----KIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRL 1088
Query: 818 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMS 876
W +G + S + S N + + S + V +++ K +
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAI----FSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTG 1144
Query: 877 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL 936
+AF P D I+A D +V+I++V + GH + ++ +AFSP +
Sbjct: 1145 HTNWVFDIAFSP-DGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVV 1203
Query: 937 VSSGADAQLCMWSIDKWEKLK 957
S D + +W++ E L+
Sbjct: 1204 ASGSQDQTVRIWNVKTGECLQ 1224
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 110/526 (20%), Positives = 203/526 (38%), Gaps = 49/526 (9%)
Query: 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 508
H V +AF P L + T G D ++VWD+V + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTR 165
Query: 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568
+FS+A D I+ W A + T +A+SADG + S G K +
Sbjct: 166 LLLFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKI----CII 221
Query: 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNR---------FLAAGDEFQIKFWD-MDNMN 618
W+ RT F V+ + ++ FL AGD+ ++ W+
Sbjct: 222 WDLQSCQATRTVPVFESVEAAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQC 281
Query: 619 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 678
+ T G ++ T+D+ + +L + +RL + G
Sbjct: 282 VYTQAQPPGPGQELTHCTLAHTAGVVLTATADHNL-LLYEARSLRLQKQFAG-------- 332
Query: 679 PSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV--K 734
S + L + LGP + V A+ +P L+ + A I G D +DV K
Sbjct: 333 ----YSEEVLDVRFLGPEDSHVVVASNSPCLKVFELQTSACQILH-GHTDIVLALDVFRK 387
Query: 735 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVH 793
+ K +S RI ++ Q+ + S V + + S L S +
Sbjct: 388 GWLFASCAKDQSVRIWRMNKAGQVMCVA-QGSGHTHSVGTVCCSRLKESFLVTGSQDCTV 446
Query: 794 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 853
KLW P + N AP +G ++ + ++ +A++ ND +
Sbjct: 447 KLWPL------PKALLSKNTAPD-----NGPILLQAQTTQRCHDKDINSVAIAPNDKLLA 495
Query: 854 SASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912
+ S + + L+ + +++ +F + F P D ++A D +++++ ++
Sbjct: 496 TGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMD-QVLATASADGTIKLWALQDFS 554
Query: 913 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 958
+GH + +AF L+SSG+D + +W+I E +++
Sbjct: 555 CLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRT 600
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1132 | ||||||
| 255557965 | 1137 | conserved hypothetical protein [Ricinus | 0.997 | 0.992 | 0.893 | 0.0 | |
| 225454832 | 1135 | PREDICTED: protein TOPLESS [Vitis vinife | 0.996 | 0.993 | 0.857 | 0.0 | |
| 224128866 | 1099 | predicted protein [Populus trichocarpa] | 0.963 | 0.992 | 0.840 | 0.0 | |
| 115474917 | 1133 | Os08g0162100 [Oryza sativa Japonica Grou | 0.995 | 0.994 | 0.765 | 0.0 | |
| 357144889 | 1135 | PREDICTED: topless-related protein 1-lik | 0.987 | 0.985 | 0.771 | 0.0 | |
| 37806272 | 1150 | WD-40 repeat protein-like [Oryza sativa | 0.995 | 0.98 | 0.752 | 0.0 | |
| 304555573 | 1141 | ramosa 1 enhancer locus 2 [Zea mays] gi| | 0.992 | 0.985 | 0.766 | 0.0 | |
| 242078279 | 1136 | hypothetical protein SORBIDRAFT_07g00418 | 0.958 | 0.955 | 0.771 | 0.0 | |
| 168031165 | 1158 | predicted protein [Physcomitrella patens | 0.992 | 0.970 | 0.712 | 0.0 | |
| 168060004 | 1102 | predicted protein [Physcomitrella patens | 0.962 | 0.989 | 0.717 | 0.0 |
| >gi|255557965|ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis] gi|223540775|gb|EEF42335.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2086 bits (5404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1013/1134 (89%), Positives = 1070/1134 (94%), Gaps = 5/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEIL KDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILCKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP+FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPAFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNP-TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPRPNPDIKTLFTDHSC+P T+NGARPPPPTN+P+VGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCSPSTANGARPPPPTNSPIVGPIPKAGAFPPIGAHGP 240
Query: 240 ---VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 296
VVSPSPGAIAGWMSSN+PSLPHP++AAGPPG VQPSSA FLKHPRTPTGMTG+DYQ
Sbjct: 241 FQPVVSPSPGAIAGWMSSNNPSLPHPAVAAGPPGLVQPSSAAAFLKHPRTPTGMTGIDYQ 300
Query: 297 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 356
SADS+HLMKR+RTGQSDEVSF+GVAHTPNVYS DDL KTV+R+L+QGSNVMSMDFHPQQQ
Sbjct: 301 SADSEHLMKRMRTGQSDEVSFSGVAHTPNVYSPDDLPKTVMRSLSQGSNVMSMDFHPQQQ 360
Query: 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SAASMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSAASMPLQAALLNDAAISVNRCVWGPD 420
Query: 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476
GLMLGVAFSKHIV LY YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 536
KVWD VAGR+QYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAVAGRRQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 596
PG WCTMMAYSADG+RLFSCGTSKEGESHLVEWNESEG IKRTYSGFRKRS GVVQFDTT
Sbjct: 541 PGLWCTMMAYSADGSRLFSCGTSKEGESHLVEWNESEGTIKRTYSGFRKRSSGVVQFDTT 600
Query: 597 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656
R+RFLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSRFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 657 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716
ANSDG+RL+RMLE RA+DKNR PSEPI+SKPL +NALGP +NVS+ +A LER DR PPA
Sbjct: 661 ANSDGLRLIRMLESRAIDKNRSPSEPINSKPLIVNALGPVANVSSGLATALERVDRMPPA 720
Query: 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 776
V+ISSLGT+D SRLVDVKPR+++++DKIKSW+IPDI D S +KALRLPDSIA KVVRLI
Sbjct: 721 VAISSLGTMDSSRLVDVKPRISDELDKIKSWKIPDIVDQSHLKALRLPDSIATGKVVRLI 780
Query: 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836
YTNSGL+LLALASNAVHKLWKWQR+ERNPSGKATA VAPQLWQPPSGTLMTNDI++SKP
Sbjct: 781 YTNSGLALLALASNAVHKLWKWQRSERNPSGKATAYVAPQLWQPPSGTLMTNDISDSKPA 840
Query: 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 896
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 900
Query: 897 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 956
GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 960
Query: 957 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1016
KSRFIQAP GRQSPL GETKVQFHNDQTHLLVVHESQI++YDSKLEC RSW PKD L AP
Sbjct: 961 KSRFIQAPPGRQSPLAGETKVQFHNDQTHLLVVHESQIAIYDSKLECLRSWYPKDTLTAP 1020
Query: 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076
I+SAIYS DGLLVY GFCDGA+GVFDA++LR RCRI PSAYIP+ +V+ N A+PLVIA H
Sbjct: 1021 IASAIYSSDGLLVYTGFCDGAVGVFDADSLRVRCRIAPSAYIPS-SVAGNNAYPLVIAAH 1079
Query: 1077 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1130
PSEPNQIALGMSDGAVHVVEPSD ELKWGG SQDNG PSNSSNP L+GQ SE
Sbjct: 1080 PSEPNQIALGMSDGAVHVVEPSDVELKWGGPSSQDNGSHPSNSSNPSLSGQQSE 1133
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454832|ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297737353|emb|CBI26554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2046 bits (5302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 972/1133 (85%), Positives = 1048/1133 (92%), Gaps = 5/1133 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSAR IML+ELKKLIEANPLFRDKL+FP+FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARGIMLIELKKLIEANPLFRDKLTFPAFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP- 239
WQHQLCKNPR NPDIKTLFTDH+C PT NGARPPPPTNNPLVGPIPKAG FPPIGAH P
Sbjct: 181 WQHQLCKNPRSNPDIKTLFTDHACTPT-NGARPPPPTNNPLVGPIPKAGAFPPIGAHNPF 239
Query: 240 --VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
VVSPSPGAIAGWMSS +PSLPH ++AAGPP VQPS+A FLKH RTPTG+TGMDYQS
Sbjct: 240 QPVVSPSPGAIAGWMSSTNPSLPHAAVAAGPPSLVQPSTAAAFLKHQRTPTGVTGMDYQS 299
Query: 298 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 357
DS+HLMKRIRTGQSDEVSF+GVAH PNVYSQDDL K+VVRT+ QGSNVMSMDFHPQQQT
Sbjct: 300 GDSEHLMKRIRTGQSDEVSFSGVAHAPNVYSQDDLPKSVVRTITQGSNVMSMDFHPQQQT 359
Query: 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417
+LLVGTNVGDISLWEVGSRERLAHKPFKVWDISA SMPLQ ALL DA ISVNRCVWGPDG
Sbjct: 360 VLLVGTNVGDISLWEVGSRERLAHKPFKVWDISACSMPLQTALLKDATISVNRCVWGPDG 419
Query: 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477
L+LGVAFSKHIV +YTYNPTGELRQHLEIDAH+GGVND+AFAHPNKQLCIVTCGDDK IK
Sbjct: 420 LILGVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVNDVAFAHPNKQLCIVTCGDDKTIK 479
Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537
VWD GR+ YTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGRRLYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597
G+WCTMMAYSADGTRLFSCGTSK+GESHLVEWNESEGAIKRTY GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTMMAYSADGTRLFSCGTSKDGESHLVEWNESEGAIKRTYLGFRKRSLGVVQFDTTR 599
Query: 598 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657
NRFLAAGDEFQIKFWDMDN N+LT V+A+GGLPASPRLRFNKEGSLLAVTT+DNGIKILA
Sbjct: 600 NRFLAAGDEFQIKFWDMDNTNILTAVEAEGGLPASPRLRFNKEGSLLAVTTNDNGIKILA 659
Query: 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 717
N+DG+RL RMLE R M+ +R PSEPI+SKPL +NALGPA+NVSAA++P+LER DR PAV
Sbjct: 660 NNDGLRLTRMLESRPMEGHRGPSEPINSKPLIVNALGPAANVSAAMSPSLERSDRIQPAV 719
Query: 718 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 777
SI++L T+D SRLVDVKP++++D++KIKSW+IPDI D SQ+KALRLPD + KVVRLIY
Sbjct: 720 SINNLATMDSSRLVDVKPKISDDLEKIKSWKIPDIVDQSQLKALRLPDPVTTGKVVRLIY 779
Query: 778 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 837
TNSGL+LLAL SNAVHKLWKWQR+ERNP GK+TA V PQLWQP +GTLMTND ++ P E
Sbjct: 780 TNSGLALLALISNAVHKLWKWQRSERNPLGKSTAYVVPQLWQPANGTLMTNDTGDNNPPE 839
Query: 838 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 897
ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAIG
Sbjct: 840 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAIG 899
Query: 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957
MEDS++QIYNVRVDEVKTKLKGHQ R+TGLAFS LN LVSSGADAQLC+WSID WEK K
Sbjct: 900 MEDSTIQIYNVRVDEVKTKLKGHQKRVTGLAFSQILNCLVSSGADAQLCVWSIDGWEKRK 959
Query: 958 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPI 1017
SRFIQAPAGR SPLVG+TKVQFHNDQ HLLVVHESQI+VYDSKLEC RSWSPKD+LPAPI
Sbjct: 960 SRFIQAPAGRSSPLVGDTKVQFHNDQAHLLVVHESQIAVYDSKLECVRSWSPKDSLPAPI 1019
Query: 1018 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1077
SSAIYSCD +LVYAGF DGA+GVFDA++LR RCRI PSAYIP+ A+SS +PLVIA HP
Sbjct: 1020 SSAIYSCDSMLVYAGFGDGAVGVFDADSLRLRCRIAPSAYIPSPALSSGV-YPLVIAAHP 1078
Query: 1078 SEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1130
SEPNQIALGMSDGAVHVVEP+D E KWGG P QDNG +PSNSSNP L+GQP+E
Sbjct: 1079 SEPNQIALGMSDGAVHVVEPTDTEPKWGGQPPQDNGSIPSNSSNPALSGQPTE 1131
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128866|ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|222839220|gb|EEE77571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1971 bits (5106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 953/1134 (84%), Positives = 1014/1134 (89%), Gaps = 43/1134 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDE+ERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTS-NGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPR NPDIKTLF DHSC PT+ NGA PPPP+N PLVGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRSNPDIKTLFIDHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGP 240
Query: 240 ---VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 296
VVSP+PGAIAGWMS+N+PSLPHP++AAGPP VQPSSA FLKHPRTPTGMTGM+YQ
Sbjct: 241 FQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQ 300
Query: 297 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 356
SADS+HLMKR+R GQS+EVSF+G+AHTPN+YSQDDL KTVVRTLNQGSNVMSMDFHPQ Q
Sbjct: 301 SADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQ 360
Query: 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SA+SMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPLQTALLNDAAISVNRCVWGPD 420
Query: 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476
GLMLGVAFSKHIV +YTYNPTGE RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 536
KVWD AG +QY FEGHEAPVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAGAGGRQYIFEGHEAPVYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 596
PG WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG+IKRTY GFRKRSL VVQFDTT
Sbjct: 541 PGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTT 600
Query: 597 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656
R+ FLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 657 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716
A+SDG+RL+RMLE RA+DK+R PSEPI+SKPL +NALG +NVS+ +A +LER DR PA
Sbjct: 661 ASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSVANVSSGLASSLERSDRIQPA 720
Query: 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 776
VSI +LGT+D SRLVDVKPR+++D DK+KSW+ DI D SQ+KALRLPDSI A
Sbjct: 721 VSIGNLGTMDNSRLVDVKPRISDDTDKLKSWK-SDIVDSSQLKALRLPDSIVA------- 772
Query: 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836
GKATA+ APQLWQPPSGT MTNDINESKP
Sbjct: 773 ------------------------------GKATASNAPQLWQPPSGTPMTNDINESKPA 802
Query: 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 896
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 803 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 862
Query: 897 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 956
GMEDS+VQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 863 GMEDSTVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 922
Query: 957 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1016
K RFIQAP RQSPLVGET+VQFHNDQ HLLVVHESQI++YDSKLECSRSWSPKD L AP
Sbjct: 923 KMRFIQAPPSRQSPLVGETRVQFHNDQAHLLVVHESQIAIYDSKLECSRSWSPKDTLAAP 982
Query: 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076
ISSAIYS DG LVY GFCDGA+GVFDA++LR RCRI PSAYIP++ S TA+PLVIA H
Sbjct: 983 ISSAIYSSDGFLVYTGFCDGAVGVFDADSLRIRCRIAPSAYIPSHPAGS-TAYPLVIAAH 1041
Query: 1077 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1130
PSEPNQIALGMSDGAVHVVEPSD E+KWGG SQDNG PSN+SNP +G SE
Sbjct: 1042 PSEPNQIALGMSDGAVHVVEPSDVEMKWGGPSSQDNGTHPSNTSNPSPSGHLSE 1095
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115474917|ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical protein OsI_27917 [Oryza sativa Indica Group] gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1844 bits (4776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1132 (76%), Positives = 982/1132 (86%), Gaps = 5/1132 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP- 239
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVGPIPK+ FPP+GAH P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAAFPPMGAHAPF 240
Query: 240 --VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
VVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + FLKHPRTPT +DYQS
Sbjct: 241 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSAPAIDYQS 300
Query: 298 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 357
ADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR LNQGSNVMS+DFHP QQT
Sbjct: 301 ADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPVQQT 360
Query: 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 361 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 420
Query: 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477
+LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 421 SILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 480
Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 481 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 540
Query: 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597
G+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 541 GHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 600
Query: 598 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVT ++NGIKILA
Sbjct: 601 NRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILA 660
Query: 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 717
N+DG RLLRMLE RA + +R P + I++KP +N LG SNVS+ +A ERPDR P V
Sbjct: 661 NTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTV 720
Query: 718 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 776
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++ALR+PD+ A +SKVVRL+
Sbjct: 721 SMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLL 780
Query: 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836
YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQP +G LM ND ++ P
Sbjct: 781 YTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNP- 839
Query: 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 896
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 840 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 899
Query: 897 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 956
GMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSSGADAQLC WSID WEK
Sbjct: 900 GMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLCAWSIDGWEKK 959
Query: 957 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1016
KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+KLEC RSWSP++ALPAP
Sbjct: 960 KSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDAKLECLRSWSPREALPAP 1019
Query: 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076
ISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYIP S + +P+V+A H
Sbjct: 1020 ISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMSSGGSVYPMVVAAH 1079
Query: 1077 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQP 1128
P EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S+ P +P
Sbjct: 1080 PLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTISAAPAAANKP 1131
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357144889|ref|XP_003573449.1| PREDICTED: topless-related protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1835 bits (4752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1126 (77%), Positives = 980/1126 (87%), Gaps = 8/1126 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDMVQGGEWDEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP- 239
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL GPIPK+ FPP+GAH P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLAGPIPKSAGFPPMGAHAPF 240
Query: 240 --VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
VV+P+ AIAGWM++ +PSLPH ++A GP G VQP + FLKHPRTPT G+DYQS
Sbjct: 241 QPVVTPN--AIAGWMTNANPSLPHAAVAQGPSGLVQPPNTAAFLKHPRTPTSAPGIDYQS 298
Query: 298 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 357
ADS+HLMKR+R GQ DEVSF+G +H PN YSQ+DL K VVRTLNQGSNVMS+DFHP QQT
Sbjct: 299 ADSEHLMKRMRVGQPDEVSFSGASHPPNAYSQEDLPKQVVRTLNQGSNVMSLDFHPVQQT 358
Query: 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 359 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 418
Query: 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477
+LGVAFSKHIV YT+ P GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 419 NILGVAFSKHIVQTYTFVPNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 478
Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537
VWD G+KQYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 479 VWDAQTGQKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 538
Query: 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597
G+WCT M+YSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 539 GHWCTTMSYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 598
Query: 598 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657
N FLAAGDEF +KFWDMDN N+LTT + DGGLPASPRLRFN+EGSLLAVT +DNGIKILA
Sbjct: 599 NHFLAAGDEFVVKFWDMDNTNILTTAECDGGLPASPRLRFNREGSLLAVTANDNGIKILA 658
Query: 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 717
N+DG RLLRMLE RA + +R P + I++KP IN LG ASNVS+ IA ERPDR PAV
Sbjct: 659 NTDGQRLLRMLESRAFEGSRGPQQ-INTKPPLINTLGSASNVSSPIAVNSERPDRMLPAV 717
Query: 718 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 776
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D I+A R PD+ + SKVVRL+
Sbjct: 718 SMSGLAPMDVSRTQDVKPRITDEAEKMKTWKLSDIVDSGHIRARRCPDTASNPSKVVRLL 777
Query: 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836
YTN+G++LL+L SNA HKLWKWQR++RNP+GK+TA+++P LWQPP+G LMTND ++ P
Sbjct: 778 YTNNGIALLSLCSNAGHKLWKWQRSDRNPTGKSTASISPHLWQPPNGILMTNDTSDGNP- 836
Query: 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 896
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 837 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 896
Query: 897 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 956
GMEDS++QIYNVRVDEVK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 897 GMEDSTIQIYNVRVDEVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 956
Query: 957 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1016
KSR+IQ PA LVG+T+VQFHNDQTH+LVVHESQ+++YD KLECSRSW P+DALPAP
Sbjct: 957 KSRYIQPPANHSGALVGDTRVQFHNDQTHVLVVHESQLAIYDGKLECSRSWYPRDALPAP 1016
Query: 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076
+SSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI SAYIP S + +P+VIA H
Sbjct: 1017 VSSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIALSAYIPPSMPSGGSVYPMVIAAH 1076
Query: 1077 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1122
P EPNQIA+GMSDGAVHVVEP D + KWG P QDNG PS SS P
Sbjct: 1077 PLEPNQIAVGMSDGAVHVVEPLDTDTKWGVAPPQDNGAHPSMSSAP 1122
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37806272|dbj|BAC99788.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] gi|125602281|gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1830 bits (4739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 865/1149 (75%), Positives = 981/1149 (85%), Gaps = 22/1149 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS-- 178
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQ
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQRDV 180
Query: 179 ---------------LNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVG 223
LNWQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVG
Sbjct: 181 ICMNNNVNIQIGNAPLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVG 240
Query: 224 PIPKAGQFPPIGAHGP---VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGF 280
PIPK+ FPP+GAH P VVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + F
Sbjct: 241 PIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAF 300
Query: 281 LKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL 340
LKHPRTPT +DYQSADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR L
Sbjct: 301 LKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNL 360
Query: 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400
NQGSNVMS+DFHP QQTILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL
Sbjct: 361 NQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAAL 420
Query: 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460
+ DAAISVNRC+W PDG +LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+H
Sbjct: 421 MKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSH 480
Query: 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 520
PNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKI
Sbjct: 481 PNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKI 540
Query: 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580
KAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY
Sbjct: 541 KAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTY 600
Query: 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 640
+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+E
Sbjct: 601 NGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNRE 660
Query: 641 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 700
GSLLAVT ++NGIKILAN+DG RLLRMLE RA + +R P + I++KP +N LG SNVS
Sbjct: 661 GSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVS 720
Query: 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 760
+ +A ERPDR P VS+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++A
Sbjct: 721 SPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRA 780
Query: 761 LRLPDSIA-ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 819
LR+PD+ A +SKVVRL+YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQ
Sbjct: 781 LRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQ 840
Query: 820 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 879
P +G LM ND ++ P EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPP
Sbjct: 841 PANGILMANDTSDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPP 899
Query: 880 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
AATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSS
Sbjct: 900 AATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSS 959
Query: 940 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 999
GADAQLC WSID WEK KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+
Sbjct: 960 GADAQLCAWSIDGWEKKKSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDA 1019
Query: 1000 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP 1059
KLEC RSWSP++ALPAPISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYIP
Sbjct: 1020 KLECLRSWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIP 1079
Query: 1060 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNS 1119
S + +P+V+A HP EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S
Sbjct: 1080 PSMSSGGSVYPMVVAAHPLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTIS 1139
Query: 1120 SNPPLTGQP 1128
+ P +P
Sbjct: 1140 AAPAAANKP 1148
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304555573|ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1| ramosa 1 enhancer locus 2 [Zea mays] gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2 [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer locus2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1823 bits (4722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1134 (76%), Positives = 979/1134 (86%), Gaps = 10/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP- 239
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL G IPK+ FPP+GAH P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPL-GSIPKSAGFPPMGAHAPF 239
Query: 240 --VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
VVSPSP AIAGWM++ +PSLPH ++A GPPG VQ + FLKHPRTPT G+DYQS
Sbjct: 240 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQS 299
Query: 298 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 357
ADS+HLMKR+R GQ DEVSF+G +H N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQT
Sbjct: 300 ADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQT 359
Query: 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417
ILLVGTNVGDI++WEVGSRER+AHK FKVWDI + ++PLQ +L+ DAA+SVNRC+W PDG
Sbjct: 360 ILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCTLPLQASLMKDAAVSVNRCLWSPDG 419
Query: 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477
+LGVAFSKHIV YT+ P G+LRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 420 TILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 479
Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597
G+WCT MAYSADGTRLFSCGTSKEG+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 599
Query: 598 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILA
Sbjct: 600 NRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASPRLRFNREGSLLAVTTSDNGIKILA 659
Query: 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 717
N+DG RLLRMLE RA + +R P + I++KP I ALGP SNVS+ IA ERPDR PAV
Sbjct: 660 NTDGQRLLRMLESRAFEGSRGPPQQINTKP-PIVALGPVSNVSSPIAVNAERPDRILPAV 718
Query: 718 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS-IAASKVVRLI 776
S S L +D SR DVKPR+ ++ +K+K+W++ DI D ++AL L D+ SK+VRL+
Sbjct: 719 STSGLAPMDASRTPDVKPRITDESEKVKTWKLADIVDNGHLRALHLTDTDTNPSKIVRLL 778
Query: 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836
YTN+G++LLAL SNAVHKLWKWQR++RNPSGK+TA+VAP LWQP +G LMTND N+ P
Sbjct: 779 YTNNGVALLALGSNAVHKLWKWQRSDRNPSGKSTASVAPHLWQPANGILMTNDTNDGNP- 837
Query: 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 896
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 838 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 897
Query: 897 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 956
GMEDS++QIYNVR+D+VK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 898 GMEDSTIQIYNVRIDDVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 957
Query: 957 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1016
KSR+IQ PA R LVG+T+VQFHNDQTHLLVVHESQ+ +YD L+C R WSP+DALPAP
Sbjct: 958 KSRYIQPPANRPGTLVGDTRVQFHNDQTHLLVVHESQLGIYDGNLDCLRLWSPRDALPAP 1017
Query: 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI-PTYAVSSNTAHPLVIAP 1075
ISSAIYSCDGLLVYAGFCDGAIGVF+AE+LR RCRI PSAYI P+ + +PLV+A
Sbjct: 1018 ISSAIYSCDGLLVYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSILACAGRVYPLVVAA 1077
Query: 1076 HPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPS 1129
HP EPNQIA+GMSDG VHVVEP D + KWG P QDNG P +P ++ PS
Sbjct: 1078 HPMEPNQIAIGMSDGKVHVVEPLDGDPKWGSAPPQDNGAHP--HPHPAISAAPS 1129
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078279|ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] gi|241940258|gb|EES13403.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1774 bits (4594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1092 (77%), Positives = 947/1092 (86%), Gaps = 7/1092 (0%)
Query: 27 KLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALD 86
+LEQESGF+FNMKHFED VQ GEWDEVE+YL GFTKVEDNRYSMKIFFEIRKQKYLEALD
Sbjct: 25 RLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 84
Query: 87 RQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVE 146
R DRAKAVEILVKDLKVF+SFNEELFKEITQLLTL+NFRQNEQLSKYGDTKSARNIML+E
Sbjct: 85 RHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLE 144
Query: 147 LKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNP 206
LKKLIEANPLFRDKL+FP FK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSC
Sbjct: 145 LKKLIEANPLFRDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAA 204
Query: 207 TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP---VVSPSPGAIAGWMSSNSPSLPHPS 263
+NGAR PPP N PLVG IPK+ FPP+GAH P VVSPSP AIAGWM++ +PSLPH +
Sbjct: 205 PTNGARAPPPANGPLVGSIPKSAGFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAA 264
Query: 264 MAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHT 323
+A GPPG VQ + FLKHPRTPT G+DYQSADS+HLMKR+R GQ DEVSF+G +H
Sbjct: 265 VAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHP 324
Query: 324 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 383
N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQTILLVGTNVGDI++WEVGSRER+AHK
Sbjct: 325 ANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKT 384
Query: 384 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 443
FKVWDI + ++PLQ +L+ DAAISVNRC+W PDG +LGVAFSKHIV YT+ P G+LRQ
Sbjct: 385 FKVWDIGSCTLPLQASLMKDAAISVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQ 444
Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH
Sbjct: 445 AEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPH 504
Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSKEG+
Sbjct: 505 YKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGD 564
Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623
SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT
Sbjct: 565 SHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTT 624
Query: 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683
D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILAN+DG RLLRMLE RA + +R P + I
Sbjct: 625 DCDGGLPASPRLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQI 684
Query: 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 743
++KP I ALGP SNVS+ IA ERPDR PAVS S L +D SR DVKPR+ ++ +K
Sbjct: 685 NTKP-PIVALGPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDPSRTPDVKPRITDESEK 743
Query: 744 IKSWRIPDISDPSQIKALRLPDS-IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 802
+K+W++ DI D ++AL L D+ SKVVRL+YTN+G++LLAL SNAVHKLWKWQR +
Sbjct: 744 VKTWKLADIVDNGHLRALHLTDTDTNPSKVVRLLYTNNGIALLALGSNAVHKLWKWQRGD 803
Query: 803 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 862
RNPSGK+TA+VAP LWQP +G LMTND N+ P EE+ ACIALSKNDSYVMSASGGKVSL
Sbjct: 804 RNPSGKSTASVAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSL 862
Query: 863 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922
FNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVR+D+VK+KLKGHQ
Sbjct: 863 FNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRIDDVKSKLKGHQK 922
Query: 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 982
+ITGLAFS ++N LVSSGADAQLC+WSID WEK KSR+IQ PA R LVG+T+VQFHND
Sbjct: 923 KITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKKKSRYIQPPANRPGTLVGDTRVQFHND 982
Query: 983 QTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
QTHLLVVHESQ+++YD LEC RSWSP+DALPAPISSAIYSCDGLLVYA FCDGAIGVF+
Sbjct: 983 QTHLLVVHESQLAIYDGNLECLRSWSPRDALPAPISSAIYSCDGLLVYAAFCDGAIGVFE 1042
Query: 1043 AETLRFRCRIGPSAYI-PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101
AE+LR RCRI PSAYI P+ + +PLV+A HP EPNQIALGMSDG VHVVEP D +
Sbjct: 1043 AESLRLRCRIAPSAYIPPSILACAGRVYPLVVAAHPMEPNQIALGMSDGKVHVVEPLDGD 1102
Query: 1102 LKWGGTPSQDNG 1113
KWG P QDNG
Sbjct: 1103 PKWGTAPPQDNG 1114
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168031165|ref|XP_001768092.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680730|gb|EDQ67164.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1664 bits (4308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 826/1160 (71%), Positives = 940/1160 (81%), Gaps = 36/1160 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ+GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQSGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPV 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPPTNNPLVG +PK G FPP+ H P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPTNNPLVGGLPKQGAFPPLTTHSPF 239
Query: 241 --VSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQS 297
PS A+AGWM++ +P PH +A GP P ++ LK PRTP T +DYQS
Sbjct: 240 QPAPPSASALAGWMANPNPPAPHAPVANGPAALTAPPNSATLLKRPRTPPSTTPTVDYQS 299
Query: 298 ADSDHLMKRIRTG-----QSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFH 352
ADS+HLMKR R G ++ V+ G +H N S DDL K V R+LNQGS VMSMDFH
Sbjct: 300 ADSEHLMKRARPGIQSVDEAKTVNCVGPSHPQNNVSPDDLPKNVARSLNQGSCVMSMDFH 359
Query: 353 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412
P Q +ILLVGTNVGDI +WEVGSR+RLA + FKVWDI+AASMP+Q AL+ D A+SVNR V
Sbjct: 360 PIQLSILLVGTNVGDIGIWEVGSRDRLAQRTFKVWDITAASMPMQAALVKDPAVSVNRTV 419
Query: 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472
W PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCGD
Sbjct: 420 WNPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGD 479
Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 532
DK IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSRV
Sbjct: 480 DKTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRV 539
Query: 533 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQ 592
DYDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVVQ
Sbjct: 540 DYDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSSGVVQ 599
Query: 593 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652
FDTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNKEGSLLAVT+SDNG
Sbjct: 600 FDTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKEGSLLAVTSSDNG 659
Query: 653 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 712
IKILAN DG+++LR LE RA D NR P EP SKP N LG S +RP+
Sbjct: 660 IKILANRDGMQMLRALEARAYDTNRAPPEPAVSKPPVGNTLGVVSTPGGGGG---DRPNS 716
Query: 713 GPPAVSISSLGTI--------------------DGSRLVDVKPRVAEDV-DKIKSWRIPD 751
A S+ T+ +G R + KPR+ +D+ D+ KSW++ +
Sbjct: 717 SSMAGSVMDGPTLNMGGSRVRPRDRVGNDHSGMEGGRTPETKPRIPDDIPDRSKSWKLTE 776
Query: 752 ISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 811
I++ +Q + +RLPDS+ +KV RLIYTN+G++LLALASNAVHKLWKWQR ERN SGKATA
Sbjct: 777 ITEQNQCRTIRLPDSLPPNKVARLIYTNAGVALLALASNAVHKLWKWQRNERNVSGKATA 836
Query: 812 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM 871
+V PQLWQP SG LMTNDI+E+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKVM
Sbjct: 837 SVTPQLWQPASGILMTNDISETNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVM 895
Query: 872 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931
T FM PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS
Sbjct: 896 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFSN 955
Query: 932 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 991
TLN LVSSGADAQLCMW D WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVHE
Sbjct: 956 TLNVLVSSGADAQLCMWGTDGWEKKKSKFVQVQPGGRSPSIGDTRVQFHNDQVRLLVVHE 1015
Query: 992 SQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1050
SQ++VYD SKL+ R W P++ PA IS+A YSCD L+YAGF DG++GVFDAE+LR RC
Sbjct: 1016 SQLAVYDASKLDRLRQWVPQNPFPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRPRC 1075
Query: 1051 RIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQ 1110
R+ P+ ++P+ VS +T +PLVIA HP+EPNQ ALG+SDG V V+EP ++E KWG P
Sbjct: 1076 RLAPTVHVPS-GVSGSTVYPLVIAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPPA 1134
Query: 1111 DNGPLPSNSSNPPLTGQPSE 1130
DNG S P Q S+
Sbjct: 1135 DNGTASGVPSGPASGNQGSD 1154
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168060004|ref|XP_001781989.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666562|gb|EDQ53213.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1645 bits (4260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/1138 (71%), Positives = 928/1138 (81%), Gaps = 48/1138 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQGGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPV 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPP NNPLVG IPK G FP +G H P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPANNPLVGGIPKQGAFP-LGTHSPF 238
Query: 241 --VSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQS 297
PS ++AGWM++ +P PH +A GP P ++ LK PRTP T +DYQS
Sbjct: 239 QPAPPSASSLAGWMANPNPPAPHAPVANGPAALTAPPNSAALLKRPRTPPSTTPTVDYQS 298
Query: 298 ADSDHLMKRIRTG-QS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQ 354
ADS+HLMKR R G QS DEV G +H N S DDL K+V R+LNQGS VMSMDFHP
Sbjct: 299 ADSEHLMKRARPGVQSVDEVFVPGGTSHPQNNVSPDDLPKSVARSLNQGSCVMSMDFHPI 358
Query: 355 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414
QQ++LLVGTNVGDI +WEVGSRE+LA + FKVWDI+AASMP+Q AL+ D A+SVNR VW
Sbjct: 359 QQSVLLVGTNVGDIGIWEVGSREKLAQRTFKVWDITAASMPMQAALVKDPAVSVNRTVWN 418
Query: 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474
PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCGDDK
Sbjct: 419 PDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDK 478
Query: 475 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534
IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSRVDY
Sbjct: 479 TIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRVDY 538
Query: 535 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 594
DAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVVQFD
Sbjct: 539 DAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSAGVVQFD 598
Query: 595 TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654
TTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNK+GSLLAVTTSDNGIK
Sbjct: 599 TTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKDGSLLAVTTSDNGIK 658
Query: 655 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 714
ILAN DG+++LR LE RA D NR P EP SK
Sbjct: 659 ILANRDGMQMLRALEARAYDTNRVPPEPAVSK---------------------------- 690
Query: 715 PAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVV 773
++G R + KPR+ +++ D+ KSW++ +I++ +Q + +RLPDS+ +KV
Sbjct: 691 --------SGMEGGRTPETKPRIPDEIPDRSKSWKLTEITEQNQCRTIRLPDSLPPNKVA 742
Query: 774 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINES 833
RLIYTN+G++LLALASNAVHKLWKWQR ERN +GKATA+V+PQLWQP SG LMTNDI+E+
Sbjct: 743 RLIYTNAGVALLALASNAVHKLWKWQRNERNINGKATASVSPQLWQPASGILMTNDISET 802
Query: 834 KPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 893
P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM PPPAATFLAFHPQDNNI
Sbjct: 803 NP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATFLAFHPQDNNI 861
Query: 894 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 953
IAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS TLN LVSSGADAQLCMW D W
Sbjct: 862 IAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFSNTLNVLVSSGADAQLCMWGTDGW 921
Query: 954 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKDA 1012
EK KS+F+Q G +SP +G+T+VQFHNDQ LLVVHESQ++VY+ +KL+ R W P++
Sbjct: 922 EKRKSKFVQVQPGGRSPSMGDTRVQFHNDQVRLLVVHESQLAVYEAAKLDRLRQWVPQNP 981
Query: 1013 LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLV 1072
PA IS+A YSCD L+YAGF DG++GVFDAE+LR RCR+ PS +IP VS +T +PLV
Sbjct: 982 FPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRPRCRLAPSVHIPP-GVSGSTVYPLV 1040
Query: 1073 IAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1130
IA HP+EPNQ ALG+SDG V V+EP ++E KWG P DNG S P Q S+
Sbjct: 1041 IAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPPADNGTASGVPSGPASGNQGSD 1098
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1132 | ||||||
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.965 | 0.966 | 0.657 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.959 | 0.960 | 0.643 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.613 | 0.619 | 0.702 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.310 | 0.475 | 0.382 | 5.4e-90 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.466 | 0.387 | 0.240 | 1e-21 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.139 | 0.298 | 0.294 | 5.6e-18 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.170 | 0.306 | 0.266 | 3.3e-12 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.213 | 0.419 | 0.274 | 3.5e-12 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.164 | 0.315 | 0.246 | 1.5e-10 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.174 | 0.588 | 0.259 | 1.9e-10 |
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3842 (1357.5 bits), Expect = 0., P = 0.
Identities = 743/1130 (65%), Positives = 877/1130 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGP- 239
WQHQLCKNPRPNPDIKTLF DHSC P NGAR KAG FPP+GAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPP-NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 240 --VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 298 ADSDHLMKRIRT-GQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 345
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 525
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705
V+ ++N IKI+ANSDG+RLL E + SE SSKP IN++ A+ AA A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENIS-------SE--SSKP-AINSIAAAA---AAAAT 704
Query: 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 764
+ DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 705 SAGHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 765 DSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824
+++ +K+ RLI+T +H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 825 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 884
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLEC 1003
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y++ KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1063
+ W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P ++
Sbjct: 1003 MKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPA-SL 1060
Query: 1064 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1113
S++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1061 SNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3680 (1300.5 bits), Expect = 0., P = 0.
Identities = 719/1117 (64%), Positives = 866/1117 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHG-- 238
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR + F P+G HG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLPVAAVA-RPSNFVPLGVHGGP 238
Query: 239 ----PVVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 292
P +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 293 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 351
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA--SLDDLPRNVVSTIRQGSVVISMDF 355
Query: 352 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 471
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 472 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 531
DDK+IKVWD+ +G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWDL-SGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 532 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 591
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 592 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 652 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIGK-IEHMD 706
Query: 712 RGPPAVSISSLGTIDG-SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AA 769
G PA I+ SR ++ KPR + VDK K + +I DP+Q + + +PDS +
Sbjct: 707 AGSPARPTPIPNGIEAMSRTME-KPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSV 765
Query: 770 SKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 829
SKV RL+YT V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND
Sbjct: 766 SKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMAND 825
Query: 830 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 889
+ E+ P E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQ
Sbjct: 826 VPEN-P-EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 883
Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
DNNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 884 DNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWT 943
Query: 950 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWS 1008
D WEK KS IQ P G+ +P VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W
Sbjct: 944 ADSWEKKKSSAIQLPPGK-AP-VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWV 1001
Query: 1009 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1068
P++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P +S
Sbjct: 1002 PQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPI 1061
Query: 1069 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1105
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1062 FPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
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| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2591 (917.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 502/715 (70%), Positives = 574/715 (80%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGP- 239
WQHQLCKNPRPNPDIKTLF DHSC N AR KA FPP+GAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 240 --VVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 297
SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 298 ADSDHLMKRIRT-GQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 345
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 525
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNR--CPSEPISSKPLTINALGPASN 698
V+ +DN IK++ANSDG+RLL +E + + ++ S P+ +P ++ ++ P N
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSI-PGMN 711
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| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 5.4e-90, Sum P(2) = 5.4e-90
Identities = 142/371 (38%), Positives = 209/371 (56%)
Query: 751 DISDPSQIKALRLPDSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKAT 810
+I DPSQ AL LPD + K+ RL Y+ HKLW W ++ N K
Sbjct: 371 EIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFCKEN 429
Query: 811 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 870
P+L QP SG M N++ S ++S +C A+ SY+ S SGGK+++F++ F+
Sbjct: 430 VYPKPRLHQPQSGKTMENEMATS--VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEK 485
Query: 871 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 930
+ F SP P AT+ F P D ++A+G++D S+ I+ + +VK KL+GH +IT LAFS
Sbjct: 486 VASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFS 543
Query: 931 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE---TKVQFHNDQTHLL 987
N LVSS +D +LC+WS W KL S+ +S L T +QF Q LL
Sbjct: 544 RCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELL 603
Query: 988 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1046
VVH+ I +Y+ + L+C W P + PA I+SA YS DG ++Y GF G+I + D++T
Sbjct: 604 VVHDGWIGLYEVRTLDCRLQWIPDASDPA-ITSATYSSDGEIIYVGFRCGSIKIVDSKTF 662
Query: 1047 RFRCRIGPSAYIPTYAVSSNTA---HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELK 1103
C+I +++ T +SN + +P V+A HPS PNQI+ G+S+G V V++P +
Sbjct: 663 MTLCQINLTSF--TQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSG-G 719
Query: 1104 WG-GTPSQDNG 1113
WG P +DNG
Sbjct: 720 WGEAAPLEDNG 730
|
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| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 139/577 (24%), Positives = 241/577 (41%)
Query: 385 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 444
K+WD + + LQ L+ + +V + PDG +L + + L+ + TGEL Q
Sbjct: 775 KIWDPATGEL-LQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504
E H + +AFA K+L + DD IK+WD+ G Q T + H V SV
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVA--F 884
Query: 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564
+ + S+++D IK W + + W +A+S DG +L S G+ K +
Sbjct: 885 SPDGKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK---N 940
Query: 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624
+ WN + G + +T G +S+ V F + ++ + IK W+ + T
Sbjct: 941 TVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGELQQTFK 999
Query: 625 A-DGGLPASPRLRFNKEGSLLAVTTSDNGIKI--LANSDGVRLLRMLEGRAMDKNRCPSE 681
D + A + F+ +G L + DN IK+ LA S+ L + LE + +
Sbjct: 1000 GHDLWIRA---VAFSPDGKHLVSGSDDNTIKLWDLATSE---LQQSLEDHSRSVHAVAFS 1053
Query: 682 PISSKPLTINALGPA----SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737
P K L ++L + + + TLE +G +V+ S G + S D ++
Sbjct: 1054 P-DDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPDGKLLASNSYDGTIKL 1112
Query: 738 AEDVDKIKSWRIPDISDPSQIKALRLPDS--IAASKVVRLIYTXXXXXXXXXXXXXVHKL 795
+ + SD A PD +A+ I H
Sbjct: 1113 WNPLTGELQQTLTGRSDWVDSVAFS-PDGKQLASGYYDSTIKLWDSATGELLQTLEGHSD 1171
Query: 796 WKWQRTERNPSGKATANVA----PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 851
+ Q +P GK A+ + +LW P +G L+ SK E +A S +
Sbjct: 1172 -RIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSKWVES----VAFSPDGKL 1226
Query: 852 VMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910
+ S+S G+ + L++ +T +++ P +A +AF P N + ++ + D+ +I++
Sbjct: 1227 LASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVDIFDT--KIWDPAT 1284
Query: 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 947
E+ LKGH + +S T A +S D LC+
Sbjct: 1285 GELLQALKGHSKWV----WSRT-GAGISIFLDQWLCL 1316
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| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 5.6e-18, Sum P(3) = 5.6e-18
Identities = 56/190 (29%), Positives = 88/190 (46%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KHFEDQVQAGEWDEVERYLCGF 60
S++++ LILQFL E ++ L++E+G N + F + V+ G WD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
T V R S + ++ +Q +E L K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LDNFRQNEQLS-----KYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLI 175
L+N Q E + KYG T R K+LIE L + ++ PS SRL +L+
Sbjct: 125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173
Query: 176 NQSLNWQ-HQ 184
+QSL+WQ HQ
Sbjct: 174 SQSLHWQKHQ 183
|
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| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 58/218 (26%), Positives = 99/218 (45%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKHFEDQVQAGEWDEVERYLCGFT 61
++E++ LI Q+L + ++V L ESG + + F + V G+W + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVEDNRYSMKIF---FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L +L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQH-NITRVHQLSSY 215
Query: 119 LTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSS--RLRTLIN 176
+ + Q +K+ + K + LV +++L P PS S RLRTL+
Sbjct: 216 MMCSTNQDLYQRAKW-EGKGILSRALV-MERLQTFMP--------PSVMMSPRRLRTLLQ 265
Query: 177 QS--LNWQHQLCKNPRPNPDIKT--LFTDHSCNPTSNG 210
Q+ L QH C + +++T L TDH C T++G
Sbjct: 266 QAVELQSQHCPCHDMAWETNLETVSLLTDHCC--TTDG 301
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| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 385 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 444
K+WD S LQ+ L + + V ++ D +L A S V ++ TG L QH
Sbjct: 321 KIWDTETGS--LQHTLEGHSDL-VRSVIFSHDSRLLASA-SDSTVKIWDTG-TGSL-QHT 374
Query: 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504
++ H V + F+H + QL + + DD +K+WD G Q+T EGH V SV H
Sbjct: 375 -LEGHRDWVRSVIFSH-DSQL-LASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSH 431
Query: 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 562
Q + S + D +K W D + + G+ W + +S D +RL + S
Sbjct: 432 DS--QLLASASDDSTVKIW--DTGTGSLQHTLEGHRDWVRSVIFSHD-SRLLA---SASD 483
Query: 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 622
+ + W+ +G+ K T G + V F +A ++ ++ WD++ ++ T
Sbjct: 484 DRTVRIWDTEKGSHKHTLEG-HSSLVTSVSFSHDSRLLASASNDQTVRIWDIEARSLQHT 542
Query: 623 VDADGGLPASPRLRFNKEGSL-LAVT 647
D D + A +RF+K SL + VT
Sbjct: 543 FDLDATIEA---MRFDKATSLWIQVT 565
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| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 50/203 (24%), Positives = 94/203 (46%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYL--CGFT 61
E V +I + L + +T LE+ESG + +K F QV+ G+WD+ + L GF
Sbjct: 67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126
Query: 62 KVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL 121
D + F + +QK+LE L + A A+ L ++ + + + + L++
Sbjct: 127 ---DEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISP 183
Query: 122 DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNW 181
+F + + ++ ++R+ +L EL+ L+ A+ + +K RL L+ SL+
Sbjct: 184 SSFISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHI 234
Query: 182 QHQLCKNPRPNPDIKTLFTDHSC 204
Q C +L++DH C
Sbjct: 235 QRDSCVFHNTLDSDLSLYSDHQC 257
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| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 55/212 (25%), Positives = 106/212 (50%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
S++ + PDG L A + + ++ Y+ G+ + LE H G++DIA++ +K +
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYD--GKFERTLE--GHKEGISDIAWSQDSKLI 103
Query: 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 525
C + DDK IK+WDV +G+ T +GH+ V+ V + + ++ I S + D ++ W
Sbjct: 104 C--SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV 159
Query: 526 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
+ A + T + ++ DGT + S G S +G + W+ + G + T S
Sbjct: 160 NTGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTEDG 215
Query: 586 RSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDN 616
+ + V+F + +F+ AG + ++ W +N
Sbjct: 216 KEVSFVKF-SPNGKFVLAGTLDNTLRLWSYNN 246
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.6716 | 0.9655 | 0.9664 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00014065001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (1135 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1132 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 4e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 333 TKTVVRTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA 391
T VRTL S V S+ F P + IL + I +W+V + + L
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCL------------ 128
Query: 392 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 451
L VN + PDG + + + L+ TG+ + H G
Sbjct: 129 -------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVA--TLTGHTG 178
Query: 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511
VN +AF+ ++L + D IK+WD+ G+ T GHE V SV +
Sbjct: 179 EVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--YLL 234
Query: 512 FSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSK 560
S + DG I+ W D G N T +A+S DG RL S
Sbjct: 235 ASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 4e-22
Identities = 64/294 (21%), Positives = 104/294 (35%), Gaps = 42/294 (14%)
Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALL 401
V + F P + + + G I +W++ + E L H V D++A L
Sbjct: 12 VTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHT-GPVRDVAA--SADGTYLA 67
Query: 402 ---NDAAISV-----NRCVW---GPDGLMLGVAFSKHI-----------VHLYTYNPTGE 439
+D I + CV G + VAFS + ++ TG+
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-VETGK 126
Query: 440 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499
+ H VN +AF P+ + + D IK+WD+ G+ T GH V S
Sbjct: 127 CLT--TLRGHTDWVNSVAF-SPDGTF-VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559
V + S++ DG IK W N +A+S DG L S
Sbjct: 183 VAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238
Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 613
+ + W+ G +T SG + + + R + + I+ WD
Sbjct: 239 --EDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 5e-20
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 19/266 (7%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
V + PDG +L + ++ TGEL + L+ H G V D+A + L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLK--GHTGPVRDVAASADGTYL- 66
Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
+ DK I++WD+ G T GH + V SV I + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI--LSSSSRDKTIKVWDVE 123
Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 585
+W +A+S DGT + S S++G L W+ G T +G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASS--SQDGTIKL--WDLRTGKCVATLTGHTGE 179
Query: 586 -RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644
S V F + L++ + IK WD+ L T+ S + F+ +G LL
Sbjct: 180 VNS---VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLL 234
Query: 645 AVTTSDNGIKILANSDGVRLLRMLEG 670
A + D I++ + ++ L G
Sbjct: 235 ASGSEDGTIRVW-DLRTGECVQTLSG 259
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.7 bits (213), Expect = 2e-17
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 27/310 (8%)
Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405
+ S+ F P + +LL G++ G I LW++ + E+L +L
Sbjct: 68 ITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHD 109
Query: 406 ISVNRCVWG-PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 464
SV++ PDG + +A S + ++ + + ++ H V +AF P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGK 168
Query: 465 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524
L D IK+WD+ G+ T GH PV S+ + I S + DG I+ W
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWD 227
Query: 525 YDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583
G + G+ + ++S DG+ L S S +G L W+ +
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASG--SSDGTIRL--WDLRSSSSLLRTLSG 282
Query: 584 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643
S+ V F + + ++ WD++ +L+++ G L F+ +GSL
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 644 LAVTTSDNGI 653
L SD+G
Sbjct: 343 LVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 19/209 (9%)
Query: 842 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 900
C+A S + + + SG G + ++++ T +++ +A + + D
Sbjct: 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-D 72
Query: 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 960
+++++++ E L GH + ++ +AFSP L SS D + +W ++ +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKC 127
Query: 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPA---P 1016
+ G + V F D T + + I ++D R+ L
Sbjct: 128 LTTLRGHTDWV---NSVAFSPDGTFVASSSQDGTIKLWD-----LRTGKCVATLTGHTGE 179
Query: 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
++S +S DG + + DG I ++D T
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 4e-14
Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 43/339 (12%)
Query: 325 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA---- 380
++ K + +V S+ F P + + + G I LW++ + + L+
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 381 HKPF-----------------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417
H ++WD+S L++ L + V+ + PDG
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSVVS--SFSPDG 253
Query: 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477
+L S + L+ + L + L H V +AF P+ +L + D ++
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAF-SPDGKLLA-SGSSDGTVR 309
Query: 478 VWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535
+WD+ G+ T +GHE PV S+ + + + DG I+ W +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595
+ +++S DG + S T + W+ S G++ R G R + F
Sbjct: 369 G-HSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSLLRNLDGHTSRVT-SLDFSP 422
Query: 596 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 634
+ + I+ WD+ + DG + AS
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-14
Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 53/207 (25%)
Query: 842 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 900
+A S + + S+S + ++++ T K +T +AF P D +A +D
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156
Query: 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 960
+++++++R + L GH + +AFSP L+SS +D + +W +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------- 209
Query: 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSA 1020
L HE+ + S ++SP
Sbjct: 210 ---------------------KCLGTLRGHENGV--------NSVAFSP----------- 229
Query: 1021 IYSCDGLLVYAGFCDGAIGVFDAETLR 1047
DG L+ +G DG I V+D T
Sbjct: 230 ----DGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.5 bits (184), Expect = 5e-14
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 312 SDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISL 370
++ +G + + D T + TL V S+ F P ++ G++ G I L
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 371 WEVGSRERLAH--------------------------KPFKVWDISAASMPLQNALLNDA 404
W++ + + L ++WD+ ++S L+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 464
SV + PDG +L S V L+ TG+L L + H G V+ ++F P+
Sbjct: 286 --SVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSF-SPDGS 341
Query: 465 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524
L + DD I++WD+ G+ T EGH V SV + ST DG ++ W
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWD 398
Query: 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560
+ D + T + +S DG L S +
Sbjct: 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-12
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 FFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAK 92
F K + + G+WDE +L R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (160), Expect = 4e-11
Identities = 46/241 (19%), Positives = 104/241 (43%), Gaps = 15/241 (6%)
Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLFNMMTFKVMTM 873
+LW +G ++ + P +A S + ++++ G + L+++ T K++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS----SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 874 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPT 932
+S + +F P D +++A G D +++++++R + L GH + + +AFSP
Sbjct: 237 TLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 933 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 992
L S +D + +W ++ + L S ++ G + + F D + L+
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP------VSSLSFSPDGSLLVSGGSD 349
Query: 993 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052
++ L + + + S +S DG +V +G DG + ++D T +
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL 408
Query: 1053 G 1053
Sbjct: 409 D 409
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (137), Expect = 2e-08
Identities = 87/396 (21%), Positives = 156/396 (39%), Gaps = 51/396 (12%)
Query: 591 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS 649
+ F L+ + IK WD+DN L +++ S + +G+ + + +S
Sbjct: 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130
Query: 650 --DNGIKILANSDGVRLLRMLEG--------------------RAMDKNRCPSEPISSKP 687
D +K+ S +L+R LEG ++D + + KP
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI------DGSRLVDVKPRVAEDV 741
L+ A S A +P D G S SS GTI G L ++ V
Sbjct: 191 LSTLAGHTDPVSSLAFSP-----DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 742 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 801
S ++ S +RL D ++S ++R + +S S+L++A + KL
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLL----- 299
Query: 802 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GK 859
SG + V LW T K E + ++ S + S ++S G
Sbjct: 300 ---ASGSSDGTVR--LWD--LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 860 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919
+ L+++ T K + ++F P D +++ G D +V+++++ + L G
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 920 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955
H +R+T L FSP +L S +D + +W + K
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 976
LKGH +T +AFSP L + D + +W ++ E L++ G P+
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPV---RD 56
Query: 977 VQFHNDQTHLLVVHE-SQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1034
V D T+L I ++D EC R+ + + +SS +S DG ++ +
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT---SYVSSVAFSPDGRILSSSSR 113
Query: 1035 DGAIGVFDAET 1045
D I V+D ET
Sbjct: 114 DKTIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW---LYDYLGSRVDYDAPGNWCTMMA 545
T +GH V V + + + + DG IK W + L + + P A
Sbjct: 4 TLKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV---A 58
Query: 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605
SADGT L S + K + W+ G RT +G V F ++
Sbjct: 59 ASADGTYLASGSSDKT----IRLWDLETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSR 113
Query: 606 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 665
+ IK WD++ LTT+ S + F+ +G+ +A ++ D IK+ + + +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVASSSQDGTIKL-WDLRTGKCV 170
Query: 666 RMLEG 670
L G
Sbjct: 171 ATLTG 175
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.5 bits (119), Expect = 3e-06
Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 21/243 (8%)
Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 943
+ ++ + DS V + ++ L+GH++ IT +AFSP L+S +D
Sbjct: 32 SLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 944 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE- 1002
+ +W +D + I++ G V + + + + LL +V L
Sbjct: 88 TIKLWDLDN----GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143
Query: 1003 CSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1061
+ + ++S +S DG LL DG I ++D T + P
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----------PLS 192
Query: 1062 AVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSN 1121
++ +T +A P IA G SDG + + + S +L + + S S +
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252
Query: 1122 PPL 1124
L
Sbjct: 253 GSL 255
|
Length = 466 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
EL LIL++L ++ET L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 912 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
E+ LKGH +T +AFSP L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480
+ H G V +AF P+ L + + DD ++VWD
Sbjct: 6 TLKGHTGPVTSVAF-SPDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 912 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
++ LKGH +T +AFSP N L S D + +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480
+ H G V +AF P+ + + + DD IK+WD
Sbjct: 7 TLKGHTGPVTSVAF-SPDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.003
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
G+ T +GH PV SV + S + DG ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQL 130
+ FE+R Q+++E + +A+E ++L F FNE+ KEI +L+ L F
Sbjct: 37 NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94
Query: 131 SKYGD 135
S Y
Sbjct: 95 SPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1132 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.8 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.71 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.65 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.65 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.6 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.59 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.58 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.57 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.57 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.46 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.46 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.45 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.45 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.41 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.4 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.4 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.37 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.35 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.35 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.32 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.3 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.29 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.25 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.24 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.23 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.23 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.13 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.13 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.06 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.03 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.02 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.01 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.97 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.97 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.92 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.89 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.83 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.82 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.78 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.73 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.72 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.7 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.69 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.69 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.68 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.68 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.64 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.64 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.61 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.61 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.6 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.6 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.58 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.55 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.55 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.54 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.52 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.49 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.48 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.48 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.47 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.4 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.39 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.37 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.37 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.37 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.35 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.34 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.33 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.32 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.32 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.21 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.21 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.2 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.2 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.11 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.05 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.05 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.03 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.01 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.0 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.0 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.97 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.96 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.93 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.91 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.89 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.89 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.85 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.84 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.84 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.83 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.83 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.76 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.74 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.73 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.73 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.68 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.61 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.54 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.49 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.46 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.46 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.43 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.43 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 97.42 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.4 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.39 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.34 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.29 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.23 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.23 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.22 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.21 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.19 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.18 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 97.16 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.06 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.04 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.98 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.89 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.84 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.84 | |
| PRK10115 | 686 | protease 2; Provisional | 96.82 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.79 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.75 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.74 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.71 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.69 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.64 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.59 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.56 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.52 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.52 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.51 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.5 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.48 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.45 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.38 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.29 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.28 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.26 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.08 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.08 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.97 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.92 | |
| PRK10115 | 686 | protease 2; Provisional | 95.9 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.84 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.77 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.74 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.61 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.61 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.43 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.43 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.42 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.41 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.36 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.35 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.34 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.3 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.23 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.92 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.61 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.41 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.28 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.23 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.23 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.19 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.01 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.87 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.57 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.55 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.39 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.59 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.19 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.85 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.85 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.74 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.71 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.58 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.53 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.34 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.01 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.96 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.8 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.8 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 90.77 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 90.29 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 90.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 90.17 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.03 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 89.98 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.86 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 89.78 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.65 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 89.62 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 89.33 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.09 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.04 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 88.99 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.89 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.83 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.47 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.46 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 88.35 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.35 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.12 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.75 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.39 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 86.96 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 86.69 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 86.48 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 86.33 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.28 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.24 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.59 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 85.54 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 85.01 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 84.67 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 84.39 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 84.32 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.01 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 83.93 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 83.69 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 83.57 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 83.41 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 83.23 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.35 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 82.14 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 81.82 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 81.63 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 80.85 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 80.51 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 80.43 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=532.38 Aligned_cols=490 Identities=21% Similarity=0.301 Sum_probs=406.7
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc---HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1132)
+.|++||+.|+|..+||.+|+.+||.|||+.++ .+.|.++++.|+|++++..+.... .++..-.+.+.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 468999999999999999999999999999886 899999999999999999988773 4444556679999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc-cCccchhhhcccCCchhHHHHHHHHHHhhcccCcccccc
Q 001176 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL-DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (1132)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1132)
||++..|...+|+.+||+...++ -++.+++++|+.-+.. .++..++.-. -......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999988 5689999999886664 4443343321 223577899999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 001176 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPV 240 (1132)
Q Consensus 161 ~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 240 (1132)
+|++||+.||+||++||+.+|.||| +.+..+||.||.|++ .+ +|. ++.++|++|++|
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------------~q----ip~-qt~qil~~htdE 226 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------------LQ----IPS-QTWQILQDHTDE 226 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------------cc----CCc-hhhhhHhhCCCc
Confidence 9999999999999999999999999 467789999999998 22 565 555556666655
Q ss_pred CCCCcccccccccCCCCCCCCCCccCCCCCCCCCCccccccccCCCCCCCCcccccccchhhHhhhcccCCcceeeecCC
Q 001176 241 VSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGV 320 (1132)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 320 (1132)
T Consensus 227 -------------------------------------------------------------------------------- 226 (519)
T KOG0293|consen 227 -------------------------------------------------------------------------------- 226 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccc
Q 001176 321 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400 (1132)
Q Consensus 321 g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1132)
||.+.||++|+ +||+++.|.+..||++.....+. +. ..
T Consensus 227 -------------------------VWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l~-----------~t 264 (519)
T KOG0293|consen 227 -------------------------VWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----LK-----------KT 264 (519)
T ss_pred -------------------------EEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----ee-----------ee
Confidence 55555777777 57888888888888876543311 11 12
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWD 340 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEec
Confidence 67899999999999999999999999999999999998765332 24567899999999999 799999999999999
Q ss_pred CCCCeEEEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
+ +|..+..+++-. ..|.++++.+ ||.++++.+.|..|++++..+...+.. .....+|++.+.|.|++++++.-.
T Consensus 341 l-Dgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 341 L-DGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred C-CcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc-
Confidence 5 566666666643 5689999876 558999999999999999887655543 335668999999999999988764
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 637 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1132)
+..+++||++..+.++.+.||..+. |.++.-..+..++++|++|++|+||+..+++++..+.+|.. .|++++|
T Consensus 416 ---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVsw 490 (519)
T KOG0293|consen 416 ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSW 490 (519)
T ss_pred ---cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEec
Confidence 6679999999999999999998753 44333334558899999999999999999999999998865 8999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEEcCC
Q 001176 638 NK-EGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 638 s~-~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
+| +..++|++++||+||||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 778999999999999998653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=472.42 Aligned_cols=489 Identities=20% Similarity=0.304 Sum_probs=403.3
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc----HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHH
Q 001176 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQ 79 (1132)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1132)
-+.+|||||.|||+|+.++++.++||+|+++++| ++.|-+.|.+|+||.++..+++| +++.+.+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4569999999999999999999999999999998 88999999999999999999988 6777789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccchhhhcccCCchhHHHHHHHHHHhhcccCccc
Q 001176 80 KYLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLF 157 (1132)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 157 (1132)
..|||+|.++...|..+||+. +.-|+..++++|-+|+.||..+.+++.+.+.+ ...+..|..+.+.|...+..
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 999999999999999999964 44456678999999999999999999998754 23455556666666554443
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001176 158 RDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1132)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 237 (1132)
+||+||+.||+|||+||+++.+.| | .++.+.|+|+-...
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGLLP---P---------------------Gt~iDLFRGkAA~K--------- 193 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGLLP---P---------------------GTTIDLFRGKAAMK--------- 193 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCCCC---C---------------------Cceeeeccchhhhh---------
Confidence 899999999999999999988887 2 22233333333320
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCccccccccCCCCCCCCcccccccchhhHhhhcccCCcceeee
Q 001176 238 GPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 317 (1132)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (1132)
.-+..++|+ ++...+++
T Consensus 194 ------------------------------------------~~~Ee~~Pt-------------~l~r~IKF-------- 210 (508)
T KOG0275|consen 194 ------------------------------------------DQEEERYPT-------------QLARSIKF-------- 210 (508)
T ss_pred ------------------------------------------hhHhhhchH-------------Hhhhheec--------
Confidence 001122222 12222222
Q ss_pred cCCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeeccccccccc
Q 001176 318 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 397 (1132)
Q Consensus 318 ~~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1132)
..++-+.|..|||||+ +|++|+.||.|.+||..+|+....- .++
T Consensus 211 -----------------------g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDL------------kYQ 254 (508)
T KOG0275|consen 211 -----------------------GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDL------------KYQ 254 (508)
T ss_pred -----------------------ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhh------------hhh
Confidence 1345788999999999 6999999999999999999876431 111
Q ss_pred c-cccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 398 N-ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 398 ~-~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
. ..+--+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++. +. +|+..|+|+.|+.|+. .+.+++.|.+
T Consensus 255 Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiLS~sfD~t 329 (508)
T KOG0275|consen 255 AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QILSASFDQT 329 (508)
T ss_pred hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhhcccccce
Confidence 1 12445889999999999999999999999999999999999874 44 8999999999999999 6999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CeEEEEEEcCCC-CE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADG-TR 552 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~-~~ 552 (1132)
+++.-+.+|++++.|+||...|+...|.+ +|..+++++.||+|++|+..+.++...+...+ -+|.++-.-|.+ ..
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH 407 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce
Confidence 99999999999999999999999999976 55999999999999999999999988776543 478888877754 56
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeecccc--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++|.. .+++++.++. |+.+++|.... ++..-+++.+|.|.++++.++|+.++.+.+.+|++..++..|..
T Consensus 408 ~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk-- 480 (508)
T KOG0275|consen 408 FIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK-- 480 (508)
T ss_pred EEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--
Confidence 777753 6779999976 78888886432 33566788999999999999999999999999999999988855
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.+..++-+|..+.+++-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 788999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=484.32 Aligned_cols=579 Identities=18% Similarity=0.260 Sum_probs=479.7
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccc-cccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
++||++|+ +|++... ..|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5777653 46888999988762 21 0234567899999999999999999999
Q ss_pred eEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC
Q 001176 428 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 506 (1132)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 506 (1132)
.+++|++.+++.++ .++. |.+||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 4565 999999999999997 99999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC
Q 001176 507 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585 (1132)
Q Consensus 507 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1132)
+...|++|..|+++++||+++... ...+..|.+.|+++++++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888899999999999999996554 6788889999999999999999999986 7789999998777777776554
Q ss_pred CceEEEEEeCC-----CCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 586 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 586 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+.++.+-++ +.+++++|++|.+++||..+++++......... .+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE-EIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch-hhhcceeccccCceEEEEccceEEEEEccc
Confidence 4777777777 679999999999999999999887766544322 366666666566677778899999999988
Q ss_pred cceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccc
Q 001176 661 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 740 (1132)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1132)
. ++.+.+.|....+.. ++.+|. .+....++..
T Consensus 313 l-~i~k~ivG~ndEI~D------------m~~lG~-----------------------------------e~~~laVATN 344 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILD------------MKFLGP-----------------------------------EESHLAVATN 344 (775)
T ss_pred c-EEehhhcCCchhhee------------eeecCC-----------------------------------ccceEEEEeC
Confidence 8 888888887776552 222221 1334455566
Q ss_pred cCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccC
Q 001176 741 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 820 (1132)
Q Consensus 741 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~ 820 (1132)
.+.+++|+..+.... -+ .+|...|.++....+|-.|++++.|..+++|.++...
T Consensus 345 s~~lr~y~~~~~~c~------ii--~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------ 398 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ------II--PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------ 398 (775)
T ss_pred CCceEEEecCCCceE------EE--eCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------
Confidence 699999988764443 22 3599999999988889999999999999999873211
Q ss_pred CCcCcccccCCCCCCCCCCeeEEEEeeCC-CEEEEee-CCeEEEEECCCCeE---------EEEeeCCCCCeEEEEEeCC
Q 001176 821 PSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS-GGKVSLFNMMTFKV---------MTMFMSPPPAATFLAFHPQ 889 (1132)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~~v~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~sp~ 889 (1132)
+.........+ | ...|.+++++..+ .++++++ |.++++|++...+. ..+...|...|+|++++|
T Consensus 399 -~~~~~~a~~~g--H-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~- 473 (775)
T KOG0319|consen 399 -SKSLCVAQANG--H-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP- 473 (775)
T ss_pred -chhhhhhhhcc--c-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-
Confidence 11111111233 7 8999999998755 4788888 99999999976221 113356999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 890 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
+..++|+|+.|++.+||+++....+.++.||..+|+|+.|+|..+.++|+|.|++|+||.+++.. +++.+
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~----- 543 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTF----- 543 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeee-----
Confidence 88999999999999999999999999999999999999999999999999999999999999865 33333
Q ss_pred CCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001176 970 PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~ 1049 (1132)
.||...|..+.|-.+|+.|++++.||-|++|++.+++++
T Consensus 544 -----------------------------------------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 544 -----------------------------------------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred -----------------------------------------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 345778999999999999999999999999999999999
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+.+. +|...|.+++-+| ...+++||+.||.|.+|.=.+.+
T Consensus 583 ~tlD-----------~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 583 MTLD-----------AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhhh-----------hccceeEEEeecC-ccceeEecCCCeEEEEeecCcHH
Confidence 9887 8899999999999 66799999999999999866654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=453.49 Aligned_cols=573 Identities=13% Similarity=0.217 Sum_probs=464.7
Q ss_pred eeecCCCCCCceeccCC------cccce-EEeec--CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccccccee
Q 001176 315 VSFAGVAHTPNVYSQDD------LTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 385 (1132)
Q Consensus 315 ~~~~~~g~~~~~~~~d~------~~~~~-~~~l~--h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~ 385 (1132)
++++++|+.++....+. .++.. +.... ..+.+++++.+||++ .|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 89999999998876553 34444 33333 567899999999998 688899999999999999977653
Q ss_pred eeecccccccccccccCC-CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCc
Q 001176 386 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 464 (1132)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~ 464 (1132)
++. |++||.-++|+|.|.++|+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|+-..
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 333 99999999999999999999999999999999987665 79999999999999999876
Q ss_pred EEEEEEcCCCcEEEEECCCCeE-EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEE
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 543 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1132)
..|++|..|+++++||+.+... +..+..|...|+++++.++ +..+++++.|..+.+||+...+....+.. ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 6799999999999999996554 7888999999999999876 48999999999999999966555554443 234566
Q ss_pred EEEcCC-----CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 544 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 544 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+.+-++ |.+++++|. ++.+++||.++++++..........+..+...+....++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 666666 668888874 78899999999988766554433346666666666777788889999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEc-CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCc
Q 001176 619 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 697 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 697 (1132)
....+-+... .|..+.|- |+.++|+++++.+.+|+|+..+. .+. .+.+|...+.+..
T Consensus 315 i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-~c~-ii~GH~e~vlSL~------------------ 372 (775)
T KOG0319|consen 315 IVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTS-YCQ-IIPGHTEAVLSLD------------------ 372 (775)
T ss_pred EehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCC-ceE-EEeCchhheeeee------------------
Confidence 9988876644 78888875 57899999999999999988776 333 7788877655321
Q ss_pred cccccccCCCCCCCCCCCCcccCccCcCCcccccccccccc-cccCceeeeecCCCCCCCcceEEecCCcccccceEEEE
Q 001176 698 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 776 (1132)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 776 (1132)
...++-++++ +.|+++++|.++.......+ .-...+|.+.|.+++
T Consensus 373 -------------------------------~~~~g~llat~sKD~svilWr~~~~~~~~~~---~a~~~gH~~svgava 418 (775)
T KOG0319|consen 373 -------------------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSLC---VAQANGHTNSVGAVA 418 (775)
T ss_pred -------------------------------ecccCcEEEEecCCceEEEEEecCCcchhhh---hhhhcccccccceee
Confidence 1223334444 56799999999543322221 112356999999999
Q ss_pred EecCC-ceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe
Q 001176 777 YTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 855 (1132)
Q Consensus 777 ~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~ 855 (1132)
++..+ ..+++++.|.++++|++...+.... .-..........| ...|.+++++|+.+++|+|
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAH-DKDINCVAIAPNDKLIATG 481 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccc----------------cceehhhHHHHhh-cccccceEecCCCceEEec
Confidence 98766 4578899999999999875221111 0000000111237 8999999999999999999
Q ss_pred e-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 856 S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 856 s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
+ |.+.+||+++......++.+|...|.|+.|+| ..+.+|+++.|++|+||.+.+..++++|.||...|..+.|-.+|+
T Consensus 482 SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred ccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 9 99999999999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC
Q 001176 935 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 999 (1132)
Q Consensus 935 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 999 (1132)
.|+|++.||-+++|++++++ |+..+..|. +.|.+++-++.+..+++ +.|+.|.+|.-
T Consensus 561 qliS~~adGliKlWnikt~e-----C~~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNE-----CEMTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEEeccCCCcEEEEeccchh-----hhhhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999999999999999987 667777887 78999999999998888 68999999974
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=416.06 Aligned_cols=571 Identities=14% Similarity=0.196 Sum_probs=441.0
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
-+.-.|.|..++.+.+ ..|.+-+++...... ++.+|..+++-..|||.|-|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 3455677877787764 688888888765432 3778999999999999999999999999
Q ss_pred eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeEEEEecCCCCCeEEEEeecc
Q 001176 428 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505 (1132)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~ 505 (1132)
.|||||....+.+ ...+++.-.++|.+++|+.|+++ |+..+ +++..+++-..+|..+..+.||...|+++.|-|.
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 9999998874433 22356778899999999999995 44443 3444444444588889999999999999999887
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec---c
Q 001176 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---G 582 (1132)
Q Consensus 506 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~ 582 (1132)
.. -.+++|+.|++|.+|+=..-+-...+..|..-|.++.|+|||.++++++. |+.+++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 65 78999999999999965544445566778889999999999999999986 7889999999999999998 6
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCC-CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|+|.+++....
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 666 8999999999999999999999999999999999998765431 122344454 668899999999999998776
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 741 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1132)
...+.+.+
T Consensus 311 -~~~~~i~G----------------------------------------------------------------------- 318 (603)
T KOG0318|consen 311 -SVLKVISG----------------------------------------------------------------------- 318 (603)
T ss_pred -Chhheecc-----------------------------------------------------------------------
Confidence 23333333
Q ss_pred CceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCC
Q 001176 742 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 821 (1132)
Q Consensus 742 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~ 821 (1132)
|...|+++..++++++|++++.||.|.-|+...
T Consensus 319 --------------------------HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~--------------------- 351 (603)
T KOG0318|consen 319 --------------------------HNKSITALTVSPDGKTIYSGSYDGHINSWDSGS--------------------- 351 (603)
T ss_pred --------------------------cccceeEEEEcCCCCEEEeeccCceEEEEecCC---------------------
Confidence 667799999999999999999999999997643
Q ss_pred CcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEE--eeCCCCCeEEEEEeCCCCCeEEEEeC
Q 001176 822 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGME 899 (1132)
Q Consensus 822 ~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~ 899 (1132)
|..-. +.+..| ...|.+++.+..+.++.++-|.++++.++.....-.. ++- .....+++..+ ++.+++.+..
T Consensus 352 -g~~~~--~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~ 425 (603)
T KOG0318|consen 352 -GTSDR--LAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACI 425 (603)
T ss_pred -ccccc--cccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEec
Confidence 22221 333447 8999999998878777777799999999865432221 121 22234888888 6667766666
Q ss_pred CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 900 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
++.+.+=|.. .+..+. -.-...+++++|++..++.|+.|+.|++|.+...+........... .+++.++|
T Consensus 426 ~~iv~l~~~~---~~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~------a~iT~vay 495 (603)
T KOG0318|consen 426 SDIVLLQDQT---KVSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR------AAITDVAY 495 (603)
T ss_pred CcEEEEecCC---cceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc------CCceEEEE
Confidence 6544443332 222222 2334678999999999999999999999999986643332222222 57899999
Q ss_pred CCCCcEEEEEe-CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccc
Q 001176 980 HNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058 (1132)
Q Consensus 980 s~dg~~l~~~~-d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1058 (1132)
|||+.+|++++ .+.+.+||...+.... ..-..|.+.|.+++|||+.++||+|+.|.+|.||+++.....-.+
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i------ 568 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII------ 568 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe------
Confidence 99999999975 7889999994444322 112346999999999999999999999999999999976544222
Q ss_pred cccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1059 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1059 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
-.+|...|..+.|. ++..+++++.|..|++|++.
T Consensus 569 ----knAH~~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 569 ----KNAHLGGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ----ccccccCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 24777779999998 57899999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=430.15 Aligned_cols=576 Identities=17% Similarity=0.255 Sum_probs=451.2
Q ss_pred eeeecCCCCCCceeccCCc-----ccc--eEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceee
Q 001176 314 EVSFAGVAHTPNVYSQDDL-----TKT--VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV 386 (1132)
Q Consensus 314 ~~~~~~~g~~~~~~~~d~~-----~~~--~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~ 386 (1132)
.+.|++||..+.....+.. ... ....+.+...|++++.||+|. +|++-...|.+.+-++.....++..
T Consensus 19 nl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f---- 93 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRF---- 93 (893)
T ss_pred cEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEE----
Confidence 3567777766555443331 122 233345889999999999998 6777778899998888877666532
Q ss_pred eecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCc-----eeeeeeeecccCCEEEEEEecC
Q 001176 387 WDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHP 461 (1132)
Q Consensus 387 ~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~v~~s~d 461 (1132)
.-+.+|.|+.|||||+++|+|.. ..+.||....... .....++.+|...|.++.|+.|
T Consensus 94 ----------------~fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~D 156 (893)
T KOG0291|consen 94 ----------------NFKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDD 156 (893)
T ss_pred ----------------eecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccC
Confidence 14568999999999999999854 5699999875432 2233467789999999999999
Q ss_pred CCcEEEEEEcCCCcEEEEECCCCeE--EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC------------
Q 001176 462 NKQLCIVTCGDDKMIKVWDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------------ 527 (1132)
Q Consensus 462 ~~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~------------ 527 (1132)
.+ +|++|+.|.++++|++...+. .+.+.+|.+.|.+..|..+. ..+++.+.||.+.+|....
T Consensus 157 Sr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~ 232 (893)
T KOG0291|consen 157 SR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDE 232 (893)
T ss_pred Cc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccc
Confidence 99 899999999999999987665 67788999999998886544 7899999999999997661
Q ss_pred -----------CCc-----------eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC
Q 001176 528 -----------LGS-----------RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585 (1132)
Q Consensus 528 -----------~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1132)
++. ..-+......+++.+|++..+.|+++.. .|.+.+|++....+++.+.-...
T Consensus 233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc
Confidence 111 0112223368899999999999999875 66788999999999998887655
Q ss_pred CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 586 RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.|..++|+..|.+++.|+ .-|.+-||+..+..-+...++| ...+++++++|||+++++|++||.|++||...+ -+
T Consensus 309 -~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC 384 (893)
T KOG0291|consen 309 -KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FC 384 (893)
T ss_pred -eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eE
Confidence 899999999999999977 4589999999987777666655 558999999999999999999999999998766 11
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
+.++
T Consensus 385 ~vTF---------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 385 FVTF---------------------------------------------------------------------------- 388 (893)
T ss_pred EEEe----------------------------------------------------------------------------
Confidence 1111
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 824 (1132)
T Consensus 389 -------------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 389 -------------------------------------------------------------------------------- 388 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCC-CeEEEEEeCCCCCeEEEEeCCC-
Q 001176 825 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDS- 901 (1132)
Q Consensus 825 ~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg- 901 (1132)
.. | ...|+.+.|+..|+.+++.+ ||+|+.||+..++..+++..+.. ...|++..| .|.++..|+.|.
T Consensus 389 ------te--H-ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F 458 (893)
T KOG0291|consen 389 ------TE--H-TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSF 458 (893)
T ss_pred ------cc--C-CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceE
Confidence 11 6 88899999999999999999 99999999999999999986553 367899999 899999998885
Q ss_pred cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC
Q 001176 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 902 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
.|++|++++|+++..+.||.++|.+++|+|++..|+|++.|.+|++||+-....... .+... ..+..++|+|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE-tl~i~-------sdvl~vsfrP 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE-TLEIR-------SDVLAVSFRP 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee-eEeec-------cceeEEEEcC
Confidence 699999999999999999999999999999999999999999999999966422111 11111 4688999999
Q ss_pred CCcEEEE-EeCCeEEEEeC-CCCceeecCC------C-----------CCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 982 DQTHLLV-VHESQISVYDS-KLECSRSWSP------K-----------DALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 982 dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~------~-----------~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
||+.+++ .-||.|.+||+ .+.....+.. + .+.....+++++|+||.++++|++.+.|++|+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 9999999 57999999998 3333221111 0 12256899999999999999999999999999
Q ss_pred CCCcceecccCCCcccccc------------------c---------------------------cCCCCCCcEEEEeCC
Q 001176 1043 AETLRFRCRIGPSAYIPTY------------------A---------------------------VSSNTAHPLVIAPHP 1077 (1132)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~------------------~---------------------------~~~~~~~v~~~~~~p 1077 (1132)
+.++..+.+++..+..... . -....+.++.+.|+|
T Consensus 611 v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP 690 (893)
T KOG0291|consen 611 VPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP 690 (893)
T ss_pred CchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC
Confidence 9999888765543211100 0 001136788999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCC
Q 001176 1078 SEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1078 ~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.++-+++++..| |.||.+.+
T Consensus 691 -tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 691 -TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred -CcCeeeeecccc-eEEEecCC
Confidence 778888888777 45676654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=409.58 Aligned_cols=556 Identities=16% Similarity=0.203 Sum_probs=431.9
Q ss_pred CCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccc
Q 001176 319 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 398 (1132)
Q Consensus 319 ~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1132)
++|+.+.+-..+.... +...-+|...++-..|||.|. ++|+|...|.|+|||....+.+...+|+
T Consensus 36 ~nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~------------- 100 (603)
T KOG0318|consen 36 TNGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ------------- 100 (603)
T ss_pred eCCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-------------
Confidence 3444444444444333 222334889999999999997 7999999999999999876554433333
Q ss_pred cccCCCCcCeEEEEEcCCCCeEEEEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 399 ALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 399 ~~~~~h~~~V~~v~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
.-.++|..++|+.|+++|++.+. ++..+++-.++|..+. ++.||...|++++|-|.... +++||++|++|
T Consensus 101 ----v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v 172 (603)
T KOG0318|consen 101 ----VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTV 172 (603)
T ss_pred ----ecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeE
Confidence 35679999999999999887654 3334444444555454 68899999999999987654 99999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCeEEEEEEcCCCCEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l 553 (1132)
.+|+=..-+...+++.|...|.++.|+|+ |.++++++.||+|.+||=.+++.+..+. .|.+.|.+++|+||++.+
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 99997777777888999999999999885 5999999999999999999999988887 889999999999999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
++++. |.++++||+.+.++++++..... .....+.|. ...|++.+.+|.|.+++......+..+.+|.. .
T Consensus 251 ~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ 322 (603)
T KOG0318|consen 251 LTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--S 322 (603)
T ss_pred EEecC----CceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--c
Confidence 99986 77799999999999998865432 122234454 56899999999999999999999999988855 8
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
|++++.++|+++|++|+.||.|.-|+..++......-+.|...+..
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~---------------------------------- 368 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG---------------------------------- 368 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE----------------------------------
Confidence 9999999999999999999999999998883222111344433221
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
......+.++.++.|.++++.++.......... .. -..+..+++..+++..++.++.++
T Consensus 369 ---------------~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~-----lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 369 ---------------MAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VK-----LGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ---------------EeecCCCcEEEEecCCeEEEEecccCcccccce-ee-----cCCCceeEEEcCCCCEEEEEecCc
Confidence 112234677888999999999886543322211 11 123345888888887666666655
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.+.+-+.. .+... .. .....+++++|+++.+|+|+ |++|+||.+....+
T Consensus 428 iv~l~~~~------------------------~~~~~--~~----~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 428 IVLLQDQT------------------------KVSSI--PI----GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred EEEEecCC------------------------cceee--cc----ccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 44442221 11111 11 55678999999999999999 99999999987654
Q ss_pred --EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-eccccCCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001176 871 --MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCM 947 (1132)
Q Consensus 871 --~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~~~D~~i~i 947 (1132)
...+..|.++|++++||| ++.+||+|...+.|.+||+.+.+.... ..-|.++|.|++|+|+..++|||+-|-.|.+
T Consensus 478 ~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII 556 (603)
T ss_pred cceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence 334667999999999999 999999999999999999998876433 4459999999999999999999999999999
Q ss_pred EECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC
Q 001176 948 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1000 (1132)
Q Consensus 948 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~ 1000 (1132)
|+++..... +.....|. ..|+.+.|-.+...+-++.|..|++|+++
T Consensus 557 ysv~kP~~~----i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 557 YSVKKPAKH----IIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEccChhhh----eEeccccc---cCceeEEEecCceEEeccCcceeEEeccc
Confidence 999876532 33444454 45999999999888877999999999863
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=420.78 Aligned_cols=591 Identities=13% Similarity=0.205 Sum_probs=449.0
Q ss_pred CcceeeecCCCCCCceeccCC-------cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccc
Q 001176 311 QSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 383 (1132)
Q Consensus 311 ~v~~~~~~~~g~~~~~~~~d~-------~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~ 383 (1132)
.+.+++.||+|..+.+..... ....+++.+.-+.+|.|+.|||||+ ++|+|. .+.+.||.......-.-..
T Consensus 57 NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~p 134 (893)
T KOG0291|consen 57 NITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFNP 134 (893)
T ss_pred ceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccCc
Confidence 688999999998776654432 3455677777889999999999999 566654 5799999876433211111
Q ss_pred eeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCC
Q 001176 384 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 463 (1132)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~ 463 (1132)
| .....+.+|-..|.++.||.|.++|++|+.|-++++|+++..+.+. ...+.+|.+.|-+.-|..+..
T Consensus 135 F-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 135 F-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANSL 202 (893)
T ss_pred c-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCcc
Confidence 1 1222367899999999999999999999999999999999877643 346889999999999999988
Q ss_pred cEEEEEEcCCCcEEEEECCC-----------------------CeE-----E------EEecCCCCCeEEEEeeccCCcc
Q 001176 464 QLCIVTCGDDKMIKVWDVVA-----------------------GRK-----Q------YTFEGHEAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 464 ~~~l~s~~~dg~v~vwd~~~-----------------------~~~-----~------~~~~~h~~~v~~i~~~~~~~~~ 509 (1132)
-++|.+.||.+.+|.... ++. . +-+......|++.+|++.. .
T Consensus 203 --~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~ 278 (893)
T KOG0291|consen 203 --DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--N 278 (893)
T ss_pred --eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--e
Confidence 799999999999997651 111 0 1112234779999998866 7
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
.|++|-..|...+|++.....+..+.....+|..++|+..|.+|+.++. +-|++.+|+..+..-+...++|.. .+.
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~ 354 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RIT 354 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-cee
Confidence 9999999999999999999999999888899999999999999999884 578999999999999999999988 899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 590 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
+++++|||+++++|++||+|+|||..++-++.++..|.. .|+.+.|+..|+.+++.+-||+|+.||+... +.++++.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft 431 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFT 431 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeec
Confidence 999999999999999999999999999999999998754 8999999999999999999999999999776 5455443
Q ss_pred ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeec
Q 001176 670 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 749 (1132)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 749 (1132)
..
T Consensus 432 ~P------------------------------------------------------------------------------ 433 (893)
T KOG0291|consen 432 SP------------------------------------------------------------------------------ 433 (893)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc-eeEEEeeccccCCCCCccccccccccccCCCcCcccc
Q 001176 750 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 828 (1132)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 828 (1132)
......+++..|.|..+++|+.|. .|.+| +..+|+++..
T Consensus 434 ------------------~p~QfscvavD~sGelV~AG~~d~F~IfvW----------------------S~qTGqllDi 473 (893)
T KOG0291|consen 434 ------------------EPIQFSCVAVDPSGELVCAGAQDSFEIFVW----------------------SVQTGQLLDI 473 (893)
T ss_pred ------------------CceeeeEEEEcCCCCEEEeeccceEEEEEE----------------------EeecCeeeeh
Confidence 123457899999999888888873 45555 5567776654
Q ss_pred cCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCe-EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 001176 829 DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 906 (1132)
Q Consensus 829 ~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 906 (1132)
+.| | +++|.+++|+|+|..||+++ |.+|++||+-... ...++. +...++.++|+| +|+-||+++-||.|.+|
T Consensus 474 -LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 474 -LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFF 547 (893)
T ss_pred -hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEE
Confidence 566 8 99999999999999999999 9999999986543 344444 778899999999 99999999999999999
Q ss_pred Ecccceeeeeecc--------------------ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCC
Q 001176 907 NVRVDEVKTKLKG--------------------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 966 (1132)
Q Consensus 907 d~~~~~~~~~l~~--------------------h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 966 (1132)
|...+..+..+.+ .....+.+++|+||..+++||..+.|++|++.++-.++...+.....
T Consensus 548 d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~s 627 (893)
T KOG0291|consen 548 DIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRS 627 (893)
T ss_pred EhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccc
Confidence 9987655433321 23458899999999999999999999999999977655433322111
Q ss_pred CCCCCCCceeEEECCCCcEEEEEe-----CCeEEEE--eCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001176 967 RQSPLVGETKVQFHNDQTHLLVVH-----ESQISVY--DSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1039 (1132)
Q Consensus 967 ~~~~~~~v~~~~~s~dg~~l~~~~-----d~~v~vw--d~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~ 1039 (1132)
-.........=.+.+-|..-++-. ++.|-+= -.....+....... .-.|+++.|||.|+-+|+++..| |.
T Consensus 628 Ldg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rp--eIrv~sv~fsPtgraFAaatTEG-l~ 704 (893)
T KOG0291|consen 628 LDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRP--EIRVTSVQFSPTGRAFAAATTEG-LL 704 (893)
T ss_pred hhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCc--eEEEEEEEECCCcCeeeeecccc-eE
Confidence 100001112223344444333310 1111100 00000000000000 22588999999999999999887 78
Q ss_pred EEeCCCcceecccC
Q 001176 1040 VFDAETLRFRCRIG 1053 (1132)
Q Consensus 1040 vwd~~~~~~~~~~~ 1053 (1132)
||.+++.-....+.
T Consensus 705 IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 705 IYSLDTTILFDPFD 718 (893)
T ss_pred EEecCCceEEcccc
Confidence 88887765544333
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=414.25 Aligned_cols=572 Identities=15% Similarity=0.243 Sum_probs=439.9
Q ss_pred cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEE
Q 001176 353 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 432 (1132)
Q Consensus 353 pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iw 432 (1132)
..|++ +++ +.--.|.+||+++|+.... + ........|+|+.-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr~-va~-~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VAV-SALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EEE-eccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 35774 433 3346899999999955432 0 012344689999999999999999999999999
Q ss_pred EecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEE
Q 001176 433 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 512 (1132)
Q Consensus 433 d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~ 512 (1132)
+..++..+. ++.||...|+++.|+..|. +|+|||.|+.|.+||+-...-+.+++||...|+..-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875433 6889999999999999999 89999999999999999988899999999999999886533 8999
Q ss_pred EEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC------------ceeeee
Q 001176 513 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------------AIKRTY 580 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~ 580 (1132)
+.+.|+.|++||+.+..+..+...|.+.+..+++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 667999998311 011112
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE--------eCC------------------------CC
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV--------DAD------------------------GG 628 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~------------------------~~ 628 (1132)
.-...+..-.++..++++++++-+.|..+.++.+.+.+.+... +.+ ..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 1111112333666777888888899999999988754321100 000 00
Q ss_pred CCCcceEEEcCCCC---EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccC
Q 001176 629 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 705 (1132)
...+.++.|.|.+. .|+. -.++++..|.+..... .
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~-~---------------------------------------- 357 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGK-T---------------------------------------- 357 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCC-C----------------------------------------
Confidence 12344555554322 1222 3344444444332100 0
Q ss_pred CCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEE
Q 001176 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 785 (1132)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 785 (1132)
.........+.+. +|...|+++++|.+...++
T Consensus 358 ----------------------------------------------~p~~~~~~~i~~~--GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 358 ----------------------------------------------SPEADRTSNIEIG--GHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred ----------------------------------------------Cccccccceeeec--cchhheeEEEeecCceeee
Confidence 0001111222333 4899999999999987555
Q ss_pred eecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEE
Q 001176 786 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 864 (1132)
Q Consensus 786 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd 864 (1132)
++ .++.+++|+. .+.+.++... ...+.+..|-|.++++++|. .|.+.+||
T Consensus 390 Sg-a~~SikiWn~----------------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 390 SG-AGESIKIWNR----------------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred ec-CCCcEEEEEc----------------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 44 4567888865 3444443321 44788999999999999999 79999999
Q ss_pred CCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-----ceeeeeec-------cccCCeeEEEEcCC
Q 001176 865 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSPT 932 (1132)
Q Consensus 865 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~V~~l~~spd 932 (1132)
+.+...+.+.+.|.+.|.+++.+| ++..+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 899999999999999999752 21111111 13467999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCC
Q 001176 933 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPK 1010 (1132)
Q Consensus 933 g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~ 1010 (1132)
|++||.+--|.+|++|-+++-+ ..-.+.||. .+|.++.+|||++.+++ +.|+.|++|-+ =|.|.+.+
T Consensus 520 gk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--- 588 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--- 588 (888)
T ss_pred CcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh---
Confidence 9999999999999999999855 566778888 78999999999999999 57999999999 67787776
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCC
Q 001176 1011 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG 1090 (1132)
Q Consensus 1011 ~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg 1090 (1132)
.+|.+.|+++.|.|+...+.+++.|+.|+-||.+..+.+..+. +|...+.+++.+| +|.++++++.|.
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-----------~H~~ev~cLav~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-----------GHHSEVWCLAVSP-NGSFVVSSSHDK 656 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-----------cchheeeeeEEcC-CCCeEEeccCCc
Confidence 4669999999999999999999999999999999998887775 7889999999999 889999999999
Q ss_pred cEEEEecCC
Q 001176 1091 AVHVVEPSD 1099 (1132)
Q Consensus 1091 ~i~vW~~~~ 1099 (1132)
+|++|....
T Consensus 657 sIRlwE~td 665 (888)
T KOG0306|consen 657 SIRLWERTD 665 (888)
T ss_pred eeEeeeccC
Confidence 999999877
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=415.75 Aligned_cols=505 Identities=14% Similarity=0.275 Sum_probs=398.0
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.....|+|+.-+||.- +||+|..||.|+||+..++....+ +.||+..|+++.|+..|.+|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3456899999999986 799999999999999998765543 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
|+||.|+.|.+||+-...-.. .+.||...|+..-|..+.+ ++++.+.|+.|++||+++..+..+.-.|.+.|+++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998765444 6899999999999998777 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCce------E-------EecCCCCeEEEEEEcCCCCEEEEEecCC-------
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V-------DYDAPGNWCTMMAYSADGTRLFSCGTSK------- 560 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~-------~~~~~~~~v~~~~~s~~~~~l~~~~~~~------- 560 (1132)
++.+ ..+++++.|+.+++|++...... . ......++...++..+++++++.-+.++
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI 273 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRI 273 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheee
Confidence 9975 68999999999999988211000 0 0000011112222223333332222100
Q ss_pred -------------------------------------------------------------------CCCCeEEEEeCCC
Q 001176 561 -------------------------------------------------------------------EGESHLVEWNESE 573 (1132)
Q Consensus 561 -------------------------------------------------------------------~~~~~i~~wd~~~ 573 (1132)
-.++.+..|.+..
T Consensus 274 ~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 274 RSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN 353 (888)
T ss_pred cCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc
Confidence 0133455555443
Q ss_pred -Cce--------eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 574 -GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 574 -~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
+.. -..+.+|.. .|.+++++.+...+++| ..+.+++|+..+.+++.++... -+.+..|-|.++++
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 111 123456666 78889998876555554 4678999999999998888743 56788888988899
Q ss_pred EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 645 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
++|...|.+.+||+... .+....+
T Consensus 428 v~G~k~Gel~vfdlaS~-~l~Eti~------------------------------------------------------- 451 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA-SLVETIR------------------------------------------------------- 451 (888)
T ss_pred EEeccCCceEEEEeehh-hhhhhhh-------------------------------------------------------
Confidence 99999999999988766 3332222
Q ss_pred CCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCC
Q 001176 725 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 804 (1132)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 804 (1132)
.|.+.|.+++.+||++.+++++.|.+|++|++......
T Consensus 452 ------------------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 452 ------------------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred ------------------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 26778899999999999999999999999998642221
Q ss_pred CCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEE
Q 001176 805 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF 883 (1132)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 883 (1132)
+..+. ++..+..... +.- ...|.|+.+||||++||++- |.+|+||-+++.+....+-||.-+|.|
T Consensus 490 ~gt~~------k~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 490 PGTQK------KVLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS 555 (888)
T ss_pred Ccccc------eeeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence 10000 0000111111 122 67899999999999999998 999999999999999999999999999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeC
Q 001176 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 963 (1132)
Q Consensus 884 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 963 (1132)
+..|| |+++++||+.|.+|+||-++-|.+.+.+-+|++.|.++.|-|+...+.|+|.|+.|+-||-...+ .++.
T Consensus 556 mDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-----~iq~ 629 (888)
T KOG0306|consen 556 MDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-----EIQK 629 (888)
T ss_pred EeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----hhee
Confidence 99999 99999999999999999999999999999999999999999999999999999999999998866 6778
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC
Q 001176 964 PAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL 1001 (1132)
Q Consensus 964 ~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~ 1001 (1132)
+.+|. ..|.+++.+|+|.++++ ++|.+|++|..+.
T Consensus 630 L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 630 LDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eccch---heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 88888 78999999999999999 6899999999744
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=398.36 Aligned_cols=367 Identities=20% Similarity=0.302 Sum_probs=304.3
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999977554 7899999999999999999 899999999999999
Q ss_pred CCCCeEE-EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
..+|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5799999999999997742 235667788776
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
+|+.++|||+..+.++..+.+|.. +|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+.
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 377799999999999999999998 99999998654 899999999999999999999999999977 899999886
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCccc
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 719 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1132)
|- .|-+|..|.+=+-....+. ...+.+....
T Consensus 299 dy-~LRtgaf~~t~~~~~~~se-~~~~Al~rY~----------------------------------------------- 329 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFSE-EQKKALERYE----------------------------------------------- 329 (480)
T ss_pred hh-hhhccccccccccCCChHH-HHHHHHHHHH-----------------------------------------------
Confidence 53 2334444422111111000 0001111000
Q ss_pred CccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeec
Q 001176 720 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 799 (1132)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~ 799 (1132)
.+.-..+..+++++.|.++.+|+-.
T Consensus 330 -------------------------------------------------------~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 330 -------------------------------------------------------AVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred -------------------------------------------------------HhhccCcceeEEecCCceEEEeccc
Confidence 0001123568999999999998532
Q ss_pred cccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC
Q 001176 800 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 878 (1132)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 878 (1132)
.+.+++. .+.+ | ...|..+.||||++++|+++ |..|++||..+|+.+.+|++|-
T Consensus 355 ---------------------~~kkpi~-rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 ---------------------KSKKPIT-RMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred ---------------------ccccchh-hhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 1222222 2444 7 88999999999999999999 9999999999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
+.|..++|+. |.++|++|+.|.++++||+.+.++...+.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=393.40 Aligned_cols=330 Identities=20% Similarity=0.356 Sum_probs=294.4
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+...+. |.+.|.|++|||+|+ .|++|+.|.++++||+.+.....+ .++|...|.|++||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWS 166 (480)
T ss_pred eccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEEC
Confidence 344455 999999999999999 599999999999999998876654 78999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec-----CCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-----d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
|||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++..
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEE
Confidence 9999999999999999999999987754 6889999999999965 555 799999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEc-----------CCCC-------
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT------- 551 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~------- 551 (1132)
+.+|..+|+|++|-.. .++++||.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 243 lsgHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred eccCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 9999999999999533 699999999999999999988899999999999999887 2233
Q ss_pred ------------------EEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001176 552 ------------------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 612 (1132)
Q Consensus 552 ------------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1132)
.|++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||+.++++++.|..|++|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLW 394 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeee
Confidence 4888874 78899999764 458888999988 89999999999999999999999999
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccc
Q 001176 613 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 692 (1132)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1132)
|.++|+.+.++.+|- ..|+.++|+.|.++|++|+.|.++++|++.+. ++...+.+
T Consensus 395 ~g~tGk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpG---------------------- 449 (480)
T KOG0271|consen 395 DGRTGKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPG---------------------- 449 (480)
T ss_pred eCCCcchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCC----------------------
Confidence 999999999999874 48999999999999999999999999999876 44333333
Q ss_pred cCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccce
Q 001176 693 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 772 (1132)
Q Consensus 693 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i 772 (1132)
|.+.|
T Consensus 450 ---------------------------------------------------------------------------h~DEV 454 (480)
T KOG0271|consen 450 ---------------------------------------------------------------------------HADEV 454 (480)
T ss_pred ---------------------------------------------------------------------------CCceE
Confidence 66788
Q ss_pred EEEEEecCCceEEeecccceeEEEe
Q 001176 773 VRLIYTNSGLSLLALASNAVHKLWK 797 (1132)
Q Consensus 773 ~~~~~s~~g~~l~~~~~dg~i~vw~ 797 (1132)
.++.++|||+.+++++.|..+++|.
T Consensus 455 f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=376.77 Aligned_cols=622 Identities=12% Similarity=0.177 Sum_probs=424.4
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe--C
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 425 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~--~ 425 (1132)
.++-+|... ++|.- ....|.+||.+...+- .++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAYP-AGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceeec-cCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccCC
Confidence 445556544 23321 1357888988765432 34667888999999999999999984 6
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
...++||++.....+. ++..|+-.|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 6789999999877555 6889999999999999999 7777664 667888988755433222 245668888885
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--------eEEEEEEc----CCCCEEEEEecCCCCCCeEEE
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGN--------WCTMMAYS----ADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~--------~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
. +|.++++.+ ...|++|.++...... .+.+... ...+++.- .+..+.++. .|.+.-
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5 558888765 6789999988765322 1111111 01111110 111122221 222332
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC----------------------
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD---------------------- 626 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 626 (1132)
| .+.+++..+........+|++.+ .+++++|+.+|.|++|+..+...+.+++..
T Consensus 246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 2 22333333322222245667766 578999999999999998876655444311
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee--eccccccccccCCCCCCCCCcccccccCCCcccccccc
Q 001176 627 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR--MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 704 (1132)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 704 (1132)
.......++.|++....|.+...|..+++||+++-.+.-+ .+-.|+.-++.+...+
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p---------------------- 379 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP---------------------- 379 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc----------------------
Confidence 1112335788999899999999999999999987633222 2223333322221110
Q ss_pred CCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE
Q 001176 705 PTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL 784 (1132)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 784 (1132)
.-.......-.+.+.++.+..|++|++|++.........++-.+. .....+.+
T Consensus 380 ---------------~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils-----~~l~ki~y------- 432 (1080)
T KOG1408|consen 380 ---------------CNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS-----ANLSKIPY------- 432 (1080)
T ss_pred ---------------ccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch-----hhhhcCcc-------
Confidence 011122233355667888999999999999863332222111000 00111111
Q ss_pred EeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEE
Q 001176 785 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLF 863 (1132)
Q Consensus 785 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vw 863 (1132)
.|++..+... ...-++|-..-. ... . ...+.++++||+|++||+|+ .|+++||
T Consensus 433 ----~d~~~q~~~d--------------~~~~~fdka~~s----~~d---~-r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 433 ----EDSTQQIMHD--------------ASAGIFDKALVS----TCD---S-RFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ----ccCchhhhhh--------------ccCCcccccchh----hcC---c-ccceEEEEECCCcceecccCccCceEEE
Confidence 1111111000 000111111111 111 2 67899999999999999999 7999999
Q ss_pred ECCCCeEEEEeeCCCCCeEEEEEeCC--CCCeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEEEcCCC--CEEEE
Q 001176 864 NMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTL--NALVS 938 (1132)
Q Consensus 864 d~~~~~~~~~~~~~~~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg--~~l~s 938 (1132)
++...+.+..+..|..+|.|+.|+.- ..++||+++.|..|.|||+... .++.++.+|...|+++.|.-.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99999999999999999999999852 3579999999999999999754 6788899999999999998877 78999
Q ss_pred EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCC
Q 001176 939 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAP 1016 (1132)
Q Consensus 939 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~ 1016 (1132)
+|.|..|++--.+.... -.+-....+......+..++..|..+++++ +.|+.|++||+ .++..+.+...++|.+.
T Consensus 567 cGADksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred ccCchhhheehhccccC---ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 99999876543332110 011111111112245778999999999999 78999999999 89999999998999888
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1017 i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
.-.+...|.|-+||+.+.|.++.++|..+|+++.+.. ||+..|+.+.|++ |-+.|++.+.||+|.||.
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-----------GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-----------GHSEAVTGVKFLN-DCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-----------Ccchheeeeeecc-cchhheeecCCceEEEEE
Confidence 8899999999999999999999999999999998875 9999999999999 778999999999999999
Q ss_pred cCC
Q 001176 1097 PSD 1099 (1132)
Q Consensus 1097 ~~~ 1099 (1132)
+.-
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 965
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=383.10 Aligned_cols=551 Identities=15% Similarity=0.202 Sum_probs=369.8
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc--------HHHHH--------------------------HH--Hhc
Q 001176 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQ--VQA 47 (1132)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~--i~~ 47 (1132)
.++++++++++||+..||+++.+.|.+|.++... ...+| .+ ...
T Consensus 20 ~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 99 (707)
T KOG0263|consen 20 HTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVEK 99 (707)
T ss_pred chHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhhh
Confidence 4678999999999999999999999999774331 11221 00 111
Q ss_pred ccHHHH------HHHhcCCCcc-------ccccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHH
Q 001176 48 GEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKE 114 (1132)
Q Consensus 48 g~w~~~------~~~l~~~~~~-------~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 114 (1132)
-.|+.. +..-..|+.+ -..++.+ ++|+|+.|.||+|++++.++.|..|+.+.--.++..+.+.+.+
T Consensus 100 ~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~-iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~~ 178 (707)
T KOG0263|consen 100 ALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSP-ILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIFQ 178 (707)
T ss_pred ccccccCCChhHhhhhhhcchhhhCcchhhhHHHHH-HHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHHH
Confidence 112211 1111112211 2234454 9999999999999999999999999998766666778899999
Q ss_pred HHHhhcccCccchhhhcccCCc----hhHHHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHHHHHHhhCCCCC
Q 001176 115 ITQLLTLDNFRQNEQLSKYGDT----KSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPR 190 (1132)
Q Consensus 115 l~~l~~~~~~~~~~~~~~~~~~----~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~ 190 (1132)
|..+-...++.+++....+... .-+| ..++.|.+++.++.. +-..-+..+|+|++..++......+
T Consensus 179 l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr-~s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~r 248 (707)
T KOG0263|consen 179 LLSLETIKHIKENETARAFRKNKYVIRLSR-DSFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMAR 248 (707)
T ss_pred HHhhhhHHHHhhhhhHHHHhhCcEEEEecH-HHHHHHHHHhhhhcc---------ccchHHHHHHHHHhCcccccccccc
Confidence 9999888888888877666552 1123 222344444443332 2345788999999988876543322
Q ss_pred CCCCc-------cccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCC----CCCCCCCCCCCcccccccccCCCCCC
Q 001176 191 PNPDI-------KTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPP----IGAHGPVVSPSPGAIAGWMSSNSPSL 259 (1132)
Q Consensus 191 ~~~~~-------~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~h~~~~~~~~~~~~~~~~~~~~~~ 259 (1132)
..... ...+..+.... ..... -+.|.+|....+.. +..-.|-+ ..+-++..
T Consensus 249 ~~~~~~~~~g~~~~~i~g~~~~e-------~~~~~-~~l~~~~~e~~~~~~~~~~~e~~D~~------~~~~~~~~---- 310 (707)
T KOG0263|consen 249 RTTKPTAMVGSEQESIAGEAKRE-------INKQK-VQLGLLLKEEEIEKKLPILLEVEDDP------NEPDNEKL---- 310 (707)
T ss_pred ccccchhhcccccccccccchhh-------cccce-eeecccccchhhhhcccccccCcccc------cccccccc----
Confidence 10000 01111211111 00111 01233333222111 00000000 00000000
Q ss_pred CCCCccCCCCCCC--CCCccc-cccccCCCCCCCC-cccccccchhhHhhhcccCCcceeeecCCCCCCceeccCCcccc
Q 001176 260 PHPSMAAGPPGFV--QPSSAV-GFLKHPRTPTGMT-GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKT 335 (1132)
Q Consensus 260 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~d~~~~~ 335 (1132)
..+. ....+. ...+.. ....+...|+... ........-....++ .....+.+|.-
T Consensus 311 ~~~~---~~~~~~~~k~~d~~~ps~d~iPlPp~~~~d~~~~~~~l~d~~kr------------------~~l~~~~lpSi 369 (707)
T KOG0263|consen 311 KKPK---KKKLLSEEKKRDPNAPSRDRIPLPPLKQVDKLAELEALKDEQKR------------------VKLGRNSLPSI 369 (707)
T ss_pred ccch---hhhhhhhhhccccCCCccccCCCCcccchhHHHHHHHHHHHHHH------------------hhcCCCCCCcE
Confidence 0000 000000 000000 0011111222100 000000000001111 11125668888
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccc---cceee---------eecccccccccccccC
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH---KPFKV---------WDISAASMPLQNALLN 402 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~ 402 (1132)
++.++. ....++|+.||+|++ ++|.|-.|..|++|.+...+.... ..+.- -++.+.........+.
T Consensus 370 c~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 999988 678999999999999 899999999999999985432110 00000 0111112222233478
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
||.++|..+.|+|+.++|++++.|+++|+|.+.+..++. ...||..+|+++.|+|-|- ++||+|.|++.++|...
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTD 523 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeeecc
Confidence 999999999999999999999999999999999987655 5779999999999999998 89999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
...+++.+.+|-+.|.|+.|+|+. .++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++++.
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e---- 597 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE---- 597 (707)
T ss_pred cCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc----
Confidence 999999999999999999999976 89999999999999999999999999999999999999999999999974
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
++.|.+||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|+.|++||+..-
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 88899999999999999999955 9999999999999999999999999998653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=341.59 Aligned_cols=312 Identities=16% Similarity=0.275 Sum_probs=264.0
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC--ccccccceeeeecccccccccccc-cCCCCcCe
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNAL-LNDAAISV 408 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V 408 (1132)
.+....+.+.|+.+|.+++|+|-..-++++|+.|-+.++|++... .......++ .+++... -......|
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDV 238 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCc
Confidence 344556667799999999999977658999999999999998751 111100000 0000000 01134589
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
++++|+.+|..||+|+.||.++||+...+. +. ++..|+++|.++.|+.+|. +|++++.|+++.+||..+|....
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988753 22 5788999999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+.-|+.+-..+.|-.. .-+++.+.|+.|+++.+....+...+.+|.+.|.++.|.|.|.+|++|+. |+++++
T Consensus 313 ~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 99999988777887543 67999999999999999999999999999999999999999999999985 889999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCC---------CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
|+.........+..|.+ .|..+.|+|+| ..+++++.|++|++||+..+.++.++..|.. +|++++|+|
T Consensus 386 Ws~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~ 462 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSP 462 (524)
T ss_pred eecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecC
Confidence 99998999999999988 88999999975 4688899999999999999999999987754 899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
+|+++++|+.||.|.+|+..++ ++++.+
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred CCcEEEecCCCCeeEeccccch-heeEee
Confidence 9999999999999999999888 555544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=339.15 Aligned_cols=585 Identities=15% Similarity=0.150 Sum_probs=433.4
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCe
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~ 428 (1132)
..|..-|..++++.+.+.+..+||.+.-..+.- -..+...|.|++-..+ ++.+|+. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 556666666888888999999999987665431 1347788999887544 4444433 34
Q ss_pred EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEE----EEecCCCCCeEEEEee
Q 001176 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 429 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~----~~~~~h~~~v~~i~~~ 503 (1132)
|.+|.. ++.+.. .+..|...|.-+.- =|. .++++..++.+.||+...+ ..+ .-++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 333333 45667777766643 466 6889999999999998874 221 11222233377774 5
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
|+.--+.++.|+.+|.+.+|++++++.+..+......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5554567899999999999999999999999999999999999999889998875 888999999999999999976
Q ss_pred cCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeeEEEEe-CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 584 RKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+ .|++++|..||+.++ +|+..|.+-+||++..+.+..+. .| .+.|....|.|....+++++.|+.+++|-..++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 44 899999999996655 46677999999999988887776 44 347899999999999999999999999976654
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 741 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1132)
.-..+.++.
T Consensus 321 dg~pR~LR~----------------------------------------------------------------------- 329 (910)
T KOG1539|consen 321 DGVPRLLRS----------------------------------------------------------------------- 329 (910)
T ss_pred CCcchheee-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred CceeeeecCCCCCCCcceEEecCCcccccceEEEEEe-cCCceEEeecccceeEEEeeccccCCCCCccccccccccccC
Q 001176 742 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 820 (1132)
Q Consensus 742 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~ 820 (1132)
..+|..+..++.|- .+|..+++++.|++++.+++....++..-.. ....
T Consensus 330 -----------------------R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~ 379 (910)
T KOG1539|consen 330 -----------------------RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNK 379 (910)
T ss_pred -----------------------ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccc
Confidence 02366677778877 6788899999999999887765443222111 0011
Q ss_pred CCcCcccccCCCCCCCCCCeeEEEEeeCC----CEEEEee--CCeEEEEECCCCeE-EEEee-----CCCCCeEEEEEeC
Q 001176 821 PSGTLMTNDINESKPTEESAACIALSKND----SYVMSAS--GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFHP 888 (1132)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~~v~~~~~s~dg----~~la~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~sp 888 (1132)
...+.....-..... -.+|..+++.... .-++++. +..++.|++..... ..++. .....+++++.++
T Consensus 380 ~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 111111000000001 3456666665421 1233333 67899999987554 22332 2336799999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccceeeeee---ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 965 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 965 (1132)
.|++.+.|...|.|-+|++++|-....+ ..|.++|++++...-++.++|++.+|-+++||..+...+....+
T Consensus 459 -CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l---- 533 (910)
T KOG1539|consen 459 -CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL---- 533 (910)
T ss_pred -cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc----
Confidence 9999999999999999999999888887 58999999999988889999999999999999998653222111
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 966 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 966 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
+ ..+.++..+.....+++ .+|-.|+++|+ +-+..+.+ .+|+..|++++|||||++|++++.|++|++||+
T Consensus 534 ~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 534 G-----SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred C-----CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 1 34677777777777777 68899999999 55555555 567999999999999999999999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-CcEEEEecCC
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPSD 1099 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-g~i~vW~~~~ 1099 (1132)
.++.++..+.. ....+.+.|+| +|++|+|+..| ..|.+|-=.+
T Consensus 606 pt~~lID~~~v------------d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 606 PTGTLIDGLLV------------DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCcceeeeEec------------CCcceeeEECC-CCCEEEEEEecCceEEEEEchh
Confidence 99999988743 36778999999 88999999999 7899996443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=339.54 Aligned_cols=599 Identities=12% Similarity=0.123 Sum_probs=383.9
Q ss_pred eeeecCCCCCCceeccCCcccceEEeec-CCCCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecc
Q 001176 314 EVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDIS 390 (1132)
Q Consensus 314 ~~~~~~~g~~~~~~~~d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~ 390 (1132)
....-|.|-.++++..+.-+. -..+. +...++|++||++|+ ++|+|- ....++||++.....+..
T Consensus 50 gl~aYpAGCvVVlfn~~~~tQ--~hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE--------- 117 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDSCTQ--SHLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE--------- 117 (1080)
T ss_pred cceeeccCcEEEEEcccccch--hheecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh---------
Confidence 333444454444444443222 22233 677999999999999 699874 567899999988765553
Q ss_pred cccccccccccCCCCcCeEEEEEcCCCCeEEEEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEE
Q 001176 391 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468 (1132)
Q Consensus 391 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~ 468 (1132)
+..|+..|+|++|+|.++|+++.+. |-.|.+||++.+..... ..-...|..++|+.||. +++
T Consensus 118 ----------fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~as----nkiss~Vsav~fsEdgS--Yfv 181 (1080)
T KOG1408|consen 118 ----------FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGAS----NKISSVVSAVAFSEDGS--YFV 181 (1080)
T ss_pred ----------hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccc----cccceeEEEEEEccCCc--eee
Confidence 6679999999999999999998765 55788998876543321 12355799999999999 788
Q ss_pred EEcCCCcEEEEECCCCeEEEE---ecCCCCCeEEEEeec-----cCCc----cEEEEEecCCeEEEEEcCCCCceEE-ec
Q 001176 469 TCGDDKMIKVWDVVAGRKQYT---FEGHEAPVYSVCPHH-----KESI----QFIFSTAIDGKIKAWLYDYLGSRVD-YD 535 (1132)
Q Consensus 469 s~~~dg~v~vwd~~~~~~~~~---~~~h~~~v~~i~~~~-----~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~-~~ 535 (1132)
|.+ ...|++|.++.++.... |.+...-.-.+.++. .+.| ..++ -+..|.+.-|. ..+.+-. ..
T Consensus 182 T~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa-it~qGhLvEFS--sRRLLDKWVq 257 (1080)
T KOG1408|consen 182 TSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA-ITAQGHLVEFS--SRRLLDKWVQ 257 (1080)
T ss_pred eee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEE-Eecccceeeec--hhhhhhhhhh
Confidence 887 67999999987763211 111111111111100 0000 1111 11223322221 1111100 01
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc--------------------C---CceEEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--------------------K---RSLGVVQ 592 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------------------~---~~v~~~~ 592 (1132)
.......|++.+ .++++.+.. ++.|++|+..+-..+.++.-.+ . ...-++.
T Consensus 258 cRTTnAnCIcVs--~r~I~cgCa----~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~ 331 (1080)
T KOG1408|consen 258 CRTTNANCICVS--SRLIACGCA----KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQ 331 (1080)
T ss_pred hhccccceeeee--cceEEEeec----cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEE
Confidence 112223455554 467877775 8889999987654433322100 0 0233577
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-CCCCCCCcceEEEcC------------CCCEEEEEeCCCcEEEEEcC
Q 001176 593 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNK------------EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 593 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~------------~~~~l~~~~~dg~i~iw~~~ 659 (1132)
|++....+.+...|..++|||++.-+.+.... .-.|...|+.+.--| .+ -+++++.|++||+|++.
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLA 410 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecc
Confidence 99989999999999999999998754332211 001122344433322 23 47899999999999987
Q ss_pred CcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccc
Q 001176 660 DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE 739 (1132)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1132)
.+ .--..+..+.... ..++.....+. ..++
T Consensus 411 ~c-tnn~vyrRNils~------------~l~ki~y~d~~-----------------------------------~q~~-- 440 (1080)
T KOG1408|consen 411 FC-TNNQVYRRNILSA------------NLSKIPYEDST-----------------------------------QQIM-- 440 (1080)
T ss_pred cc-cccceeecccchh------------hhhcCccccCc-----------------------------------hhhh--
Confidence 63 1111111100000 00000000000 0000
Q ss_pred ccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccccc
Q 001176 740 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 819 (1132)
Q Consensus 740 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~ 819 (1132)
.|...-++|-.. .........+++++++|+|++|++|...|.++||++...+.
T Consensus 441 ~d~~~~~fdka~-----------~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------- 493 (1080)
T KOG1408|consen 441 HDASAGIFDKAL-----------VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------- 493 (1080)
T ss_pred hhccCCcccccc-----------hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------
Confidence 000011111110 00011346789999999999999999999999998853211
Q ss_pred CCCcCcccccCCCCCCCCCCeeEEEEee---CCCEEEEee-CCeEEEEECCC-CeEEEEeeCCCCCeEEEEEeCCCC--C
Q 001176 820 PPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDN--N 892 (1132)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~~v~~~~~s~---dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~--~ 892 (1132)
...+. .| +.+|.|+.||. ..++||+++ |.-|+|||+.. ..++.++.+|...|+++.|.- .| .
T Consensus 494 -------~~~~e--AH-esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~ 562 (1080)
T KOG1408|consen 494 -------TCFME--AH-ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNR 562 (1080)
T ss_pred -------hhhee--cc-cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCce
Confidence 00112 27 99999999986 457899999 88899999864 567889999999999999987 44 5
Q ss_pred eEEEEeCCCcEEEEEcccceeeeeeccc-----cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCC
Q 001176 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 967 (1132)
Q Consensus 893 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 967 (1132)
.+++++.|+.|.+--.....-...+..| ...++.++..|..+++++++.|..|+||++++++..+ ..+...++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k--~FKgs~~~ 640 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK--SFKGSRDH 640 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee--eecccccC
Confidence 6778889987765332211111222222 3458899999999999999999999999999988543 23333333
Q ss_pred CCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 968 QSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 968 ~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
. .....+...|.|.|+++ +.|+++.++|. .++++... .+|+..|+.+.|++|.++|++.+.||+|.||.+..
T Consensus 641 e---G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 641 E---GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred C---CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 3 56678899999999999 68999999999 99998876 56799999999999999999999999999999875
Q ss_pred cc
Q 001176 1046 LR 1047 (1132)
Q Consensus 1046 ~~ 1047 (1132)
-.
T Consensus 715 ~m 716 (1080)
T KOG1408|consen 715 TM 716 (1080)
T ss_pred hH
Confidence 33
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=339.77 Aligned_cols=282 Identities=18% Similarity=0.271 Sum_probs=264.6
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC--CCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~ 419 (1132)
...+|..+.||+|++ .+||||.+|.++||+..+...+.. +.||.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 457999999999999 799999999999999999876653 7899999999999996 679
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999876555 6889999999999999999 8999999999999999999999889999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
++|.++ |.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~D--GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPD--GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCC--CceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 999875 499999999999999999999999999999999999999999999999985 88899999999999999
Q ss_pred eccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 580 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
+.+|.+ -|+.+.|+| .|.+|++++.|++++||...+..++..+.+|.+ .|.++.+++|+..+++++.|.++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999988 899999998 678899999999999999999999999998865 899999999999999999999999995
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=329.65 Aligned_cols=637 Identities=14% Similarity=0.187 Sum_probs=422.3
Q ss_pred CceeccCCcccceEEeec-CCCCeeEEEEccCCC--eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccc
Q 001176 324 PNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400 (1132)
Q Consensus 324 ~~~~~~d~~~~~~~~~l~-h~~~V~~~~~spdg~--~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1132)
.++...|........++. |..+|+|+.|-|+.+ -.+++|+.|+.|++|.++........ .
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~ 96 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------T 96 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------e
Confidence 344444554556667777 999999999999876 24889999999999999843322211 1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecc--cCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
+.+|...+.| ++.......+...|+++.+||.+..+ +.....+.-- ..--.|+++.++.+.++++.|+.+..|.+
T Consensus 97 ~~g~~~~~~c--v~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~ 173 (764)
T KOG1063|consen 97 IQGHCKECVC--VVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL 173 (764)
T ss_pred ecCcceeEEE--EEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE
Confidence 4455555544 44333333334789999999995544 2111122111 22235677778666667888888888988
Q ss_pred EECCCC--eEEEEecCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEcCCCC------------------------ce
Q 001176 479 WDVVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------SR 531 (1132)
Q Consensus 479 wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~------------------------~~ 531 (1132)
+.-... +.+..+.||.+.|.+++|...+. .-+|+++|.|..||+|.+.-.. ..
T Consensus 174 ~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 174 YSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 875543 45678999999999999975544 4688999999999999764332 00
Q ss_pred -------EEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ceeeeec----cccCCceEEEEEeCCCC
Q 001176 532 -------VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 532 -------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~~ 598 (1132)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. --+.... ++.........|+|+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence 023488999999999999988888876 777999987654 2222221 22333578899999999
Q ss_pred EEEEEEcCCeEEEEECC-CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccccccc
Q 001176 599 RFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 677 (1132)
Q Consensus 599 ~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1132)
.+++-+..|..++|... ...........++...|..++|+|.|.+|++.+.|.+-|+|-.-..+.....+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi--------- 400 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI--------- 400 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee---------
Confidence 99999999999999832 23333333344556689999999999999999999999988543111111100
Q ss_pred CCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCc
Q 001176 678 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 757 (1132)
Q Consensus 678 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 757 (1132)
.+
T Consensus 401 ------------------------------------------------------------------------aR------ 402 (764)
T KOG1063|consen 401 ------------------------------------------------------------------------AR------ 402 (764)
T ss_pred ------------------------------------------------------------------------cc------
Confidence 00
Q ss_pred ceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCC
Q 001176 758 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 837 (1132)
Q Consensus 758 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~ 837 (1132)
.+-|...++|+++-+....+++++....+++|+.+..-...... +-.+..+. ...+.. .
T Consensus 403 -------PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~--------i~g~~~~~--~~~~p~----g 461 (764)
T KOG1063|consen 403 -------PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMA--------ICGKCFKG--SDELPD----G 461 (764)
T ss_pred -------cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHH--------HhCccccC--chhccc----c
Confidence 01267778889988876778888888999999765310000000 00000000 000000 1
Q ss_pred CCeeEEEEeeCCCEE-EEeeCCe--E-----------EEEECC---------CCeEEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 838 ESAACIALSKNDSYV-MSASGGK--V-----------SLFNMM---------TFKVMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~l-a~~sdg~--i-----------~vwd~~---------~~~~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
..|..+-+|.+.-+. .+-+.+. + .+.... ....+..+-||.-+|++++.+| +++++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnli 540 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLI 540 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEE
Confidence 222222222221111 0100000 0 000000 0122345678999999999999 99999
Q ss_pred EEEeCCC-----cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 895 AIGMEDS-----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 895 asg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
|+++... .|++|+..+......+.+|+-.|+.|+|||||++|++++.|.++.+|........... ......|.
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht- 618 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT- 618 (764)
T ss_pred eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc-
Confidence 9987553 5999999998888899999999999999999999999999999999998664432221 22233444
Q ss_pred CCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CC--CceeecCCCCCCCCCeEEEEEcc-----CCCEEEEEecCCcEEE
Q 001176 970 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALPAPISSAIYSC-----DGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~--~~~~~~~~~~~h~~~i~~i~~s~-----dg~~las~~~dg~i~v 1040 (1132)
.-|.++.|+|+++++++ +.|+.|.||.. +. +++..+. ...++..|+++++.| .+.++++|-+.|.|.+
T Consensus 619 --RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a-~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 619 --RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA-CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred --eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc-hhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 56788899999999999 68999999999 44 4554432 234588999999986 2347899999999999
Q ss_pred EeCCCcceecccCC-CccccccccCCCCCCcEEEEeCCCC---------CCeEEEEeCCCcEEEEecC
Q 001176 1041 FDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSE---------PNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
|....-........ .......-..+|...|..+.|.|.. ...|++|+.|..++++++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 696 WRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99652111111100 0001112235777889999999842 2356999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=333.91 Aligned_cols=285 Identities=20% Similarity=0.321 Sum_probs=262.1
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
+.+.+|..+.||+|++.||||+.+|.+++|+..+...+. +|.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467799999999999999999999999999999875444 79999999999999998422379999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
+..++..+.+|...|..++|+|++ ++|+|++.|.+-++||+++........+|...|.+++|.+||..+++||.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999866 99999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 641 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 641 (1132)
|..-++||+++|+++..+.+|.. .|..++|+|+|..+++||.|++++|||++....+.++..|.. -|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 67789999999999999999888 899999999999999999999999999999999999988865 799999999 88
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCc
Q 001176 642 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 721 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1132)
.+|++++.|+++++|...+. .+++.+.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999998777 55555544
Q ss_pred cCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEe
Q 001176 722 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 797 (1132)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~ 797 (1132)
|.+.|.++.+++|+..+++++.|.++++|.
T Consensus 429 ----------------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 667889999999999999999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=326.11 Aligned_cols=589 Identities=15% Similarity=0.224 Sum_probs=399.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.+.|.|+.|+|...+ +.++-..|.|.|||.++...+.. | .-..-+|.+..|-+--++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks--f-----------------eV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS--F-----------------EVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee--e-----------------eecccchhhheeeeccceEE
Confidence 7889999999999995 55667789999999999876653 2 22556899999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i 500 (1132)
+|+.|..|+||+.++++.++ .+.+|.+.|+|++.+|... +++|+|.|-+|++||.+.+ .+.++|.||+.-|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 6899999999999999998 8999999999999999865 6778999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+|+|... +.+++++.|++|++|.+....+..++.+|...|+|+.+-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999754 899999999999999999999999999999999999998755 68999874 8889999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++.||.. .|..++|+|.-..+++|++||+++||+..+-+...++.... ..++|++-.+.+..+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999988888776553 48999999998888999998888765 22
Q ss_pred CCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccc
Q 001176 659 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 738 (1132)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1132)
..+...+. + ...
T Consensus 298 greeP~vs-M-------------------------------------------------------------d~~------ 309 (794)
T KOG0276|consen 298 GREEPAVS-M-------------------------------------------------------------DSN------ 309 (794)
T ss_pred cCCCCcee-e-------------------------------------------------------------cCC------
Confidence 22200000 0 000
Q ss_pred cccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccc
Q 001176 739 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 818 (1132)
Q Consensus 739 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~ 818 (1132)
| -.+|.... .|..+-. -+.+.++
T Consensus 310 ---g-KIiwa~~~-------------------ei~~~~~-------ks~~~~~--------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVHS-------------------EIQAVNL-------KSVGAQK--------------------------- 332 (794)
T ss_pred ---c-cEEEEcCc-------------------eeeeeec-------eeccCcc---------------------------
Confidence 0 11222111 0111100 0000000
Q ss_pred cCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe
Q 001176 819 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 898 (1132)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 898 (1132)
++..|+.+....+..+.-.-....++.||+|+++++++||.-+||..-..+ ..+-+.-....|++ +.+..|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 111111111111110000112245778999999999999999998854322 22445667788999 777888888
Q ss_pred CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEE
Q 001176 899 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 899 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 978 (1132)
.++.|.++ ++.+....+...-. +..+ -.|.+|...+ ++.+++||.++++.+. ... .....+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeE
Confidence 89999999 66776666543211 1111 2355555554 5569999999987433 222 1235789
Q ss_pred ECCCCcEEEEEeCCeEEEEeCCCCceeecCC-CCCC-CCCeEEEEE---ccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 979 FHNDQTHLLVVHESQISVYDSKLECSRSWSP-KDAL-PAPISSAIY---SCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 979 ~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~-~~~h-~~~i~~i~~---s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
|+.+|.+++++.|.+..++..+...+..... +... ...|.. +| ......+-+|..-|...||...+.+.-..+.
T Consensus 469 w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGied-AfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vg 547 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIED-AFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVG 547 (794)
T ss_pred EecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHH-HHHHHhhhhhheeeceeeeeEEEEeecccceeEEcC
Confidence 9999999999888776666553222211110 0000 000000 00 0112234444444444555444444433332
Q ss_pred CCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc---ccccCCCC--CCCCCCCCCC
Q 001176 1054 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE---LKWGGTPS--QDNGPLPSNS 1119 (1132)
Q Consensus 1054 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~---~~~~~~~~--~~~~~~~~~~ 1119 (1132)
...+. .-........+.+-| .++.+.-+..+-.|.-+.+...- ++..+.+. ...|.+|.+|
T Consensus 548 Ge~~~----v~h~~~~mylLgy~~-~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~ 613 (794)
T KOG0276|consen 548 GETYT----VAHLDRIMYLLGYVA-NDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP 613 (794)
T ss_pred CceEE----EEEeccchhheeeee-cCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCc
Confidence 22111 012223344566777 44566666666677666665433 22222333 2455555554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=302.54 Aligned_cols=291 Identities=17% Similarity=0.279 Sum_probs=264.1
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
.++|+ |...|.++.|++|.+ .++++|.||.+.|||.-+....+. +.-....|..+||+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 47888 999999999999999 599999999999999988776542 333677999999999
Q ss_pred CCCeEEEEeCCCeEEEEEecCCC---ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTG---ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~---~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
.|+++|+|+-|....||++.+.. ......++.+|++.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.+
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 99999999999999999998642 2344457899999999999999775 89999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|.+.|.++.+.|. +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++|+. |++.++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeec
Confidence 9999999999886 5689999999999999999999999999999999999999999999999975 8889999999
Q ss_pred CCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 573 EGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 573 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
..+.+..+.... ...|++++|+..|++|++|..|..+.+||.-.++.+..+.+|.. .|.++..+|||.-+++|+-|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 999888887442 23699999999999999999999999999999999999998865 899999999999999999999
Q ss_pred cEEEEE
Q 001176 652 GIKILA 657 (1132)
Q Consensus 652 ~i~iw~ 657 (1132)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=300.14 Aligned_cols=297 Identities=22% Similarity=0.308 Sum_probs=253.9
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+..+++ |++.|+.++..+.+..++.+++.|.++.+|++.......-. ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence 455677 99999999999998889999999999999999865332211 111378999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH- 493 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h- 493 (1132)
+||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .++||+.|++|++|++.. .+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCC
Confidence 999999999999999999999986544 6889999999999999999 799999999999999654 445555443
Q ss_pred -CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 494 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 494 -~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.+.|.+++|+|+.+..+|++++.|++|++||+++-+....+.+|.+.++.+++||||...++++. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999987799999999999999999999999999999999999999999999999874 8889999999
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-------CCCcceEEEcCCCCEEE
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~ 645 (1132)
.++.+..+.... .|.+++|+|+.-.|+ +..+..|+|||+.++..+..+..... .....+++|++||..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988887544 799999999865544 44566799999999998877754321 22345789999999999
Q ss_pred EEeCCCcEEEEEcC
Q 001176 646 VTTSDNGIKILANS 659 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~ 659 (1132)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=324.39 Aligned_cols=553 Identities=14% Similarity=0.211 Sum_probs=407.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.+.|+|++=..+-- ++|.| +.|.+|-- |+.+. ..+.+|...|.-+. +=|.+++
T Consensus 75 lp~~I~alas~~~~v-y~A~g---~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV-YVASG---NKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE-EEecC---cEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 778999998777643 23332 56666643 22211 12445776676554 3588999
Q ss_pred EEeCCCeEEEEEecCC-Cceeeeee-eecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 422 VAFSKHIVHLYTYNPT-GELRQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~-~~~~~~~~-l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
++..++.+.||+..+. .......+ ++...+.|+++. +|..--..++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 22111112 222222377664 45432225889999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
+.-+|.- +.++.|..+|+|.+++++..+.+..+....++|++++|..||+.+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9877765 79999999999999999999999999877899999999999998777653 367799999999888887
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEc-CCCCEEEEEeCCCcEE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~ 654 (1132)
....+.+.+....|-|....+++++.|+.+++|=.+++. .+..-.+| ..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEecccCcchh
Confidence 775444488889999999999999999999988665432 33333444 4578899998 5899999999999999
Q ss_pred EEEcCCcceeeeecc-ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccc
Q 001176 655 ILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 733 (1132)
Q Consensus 655 iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1132)
.+++.... .-+.+. .|....
T Consensus 361 ~fs~~~e~-~~~~l~~~~~~~~---------------------------------------------------------- 381 (910)
T KOG1539|consen 361 SFSVISES-QSQELGQLHNKKR---------------------------------------------------------- 381 (910)
T ss_pred hhhhhHHH-HhHhhcccccccc----------------------------------------------------------
Confidence 98875431 111110 010000
Q ss_pred ccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCC----ceEEee-cccceeEEEeeccccCCCCCc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG----LSLLAL-ASNAVHKLWKWQRTERNPSGK 808 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g----~~l~~~-~~dg~i~vw~~~~~~~~~~~~ 808 (1132)
.+.+.+.... .+ .-..|..+++.... ..++++ -.+...+.|++....
T Consensus 382 -------~kk~~~~~~~---------~~------k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~------ 433 (910)
T KOG1539|consen 382 -------AKKVNVFSTE---------KL------KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT------ 433 (910)
T ss_pred -------cccccccchh---------hh------cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc------
Confidence 0000000000 00 11223444443321 113333 334667777764211
Q ss_pred cccccccccccCCCcCcc--cccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEe---eCCCCCeE
Q 001176 809 ATANVAPQLWQPPSGTLM--TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---MSPPPAAT 882 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~--~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~ 882 (1132)
.|.-. ...++. . ...+++++.++.|++.+.|+ .|.|.+|++++|-....+ ..|.++|+
T Consensus 434 -------------~G~~~L~~~~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 434 -------------SGRHVLDPKRFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred -------------cccEEecCccccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 11100 000111 1 56799999999999999998 899999999999988888 57999999
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeee
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 962 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 962 (1132)
.++... -++.+++++.+|.+..||..+..++..++ -...++++..+.....+|.+..|-.|+++|+.+.+ ..+
T Consensus 498 gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR 570 (910)
T KOG1539|consen 498 GLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVR 570 (910)
T ss_pred EEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhH
Confidence 999988 78899999999999999999888777776 44568889998888899999999999999999865 566
Q ss_pred CCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-CcEE
Q 001176 963 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIG 1039 (1132)
Q Consensus 963 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-g~i~ 1039 (1132)
.+.||. ..+++++|||||+||++ +.|++|++||+ ++.++..+.. ..+++++.|||+|.+|||...| .-|+
T Consensus 571 ~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 571 EFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred Hhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEE
Confidence 777887 78999999999999999 67999999999 8887776654 6899999999999999999998 6799
Q ss_pred EEeCCC
Q 001176 1040 VFDAET 1045 (1132)
Q Consensus 1040 vwd~~~ 1045 (1132)
+|.=.+
T Consensus 644 lWsNks 649 (910)
T KOG1539|consen 644 LWSNKS 649 (910)
T ss_pred EEEchh
Confidence 996543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=291.36 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=228.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+-|+...||+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIYP 125 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEEe
Confidence 78999999999999999999999999999999998876555 3444577999999999999 899999999999999
Q ss_pred CCCC------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC-CCCEE
Q 001176 481 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTRL 553 (1132)
Q Consensus 481 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 553 (1132)
+.+. +..+.+.+|.+.+.++.|..+ ..|+|+|.|.+..+||++++.....+.+|.+.|.++.++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 9855 345678999999999999763 6899999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++++- |...++||++.+.++++|.+|.. .|+++.|.|+|.-|++|++|++.++||++..+.+..+........|+
T Consensus 203 vSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 203 VSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred Eeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 99986 77799999999999999999998 89999999999999999999999999999999999998777777899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++|+..|++|++|..|.++.+||.-.+
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecccc
Confidence 9999999999999999999999997655
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=315.24 Aligned_cols=585 Identities=15% Similarity=0.194 Sum_probs=400.5
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC---eEEEEeC
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 425 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~las~~~ 425 (1132)
..|.|.+ ++|.|. ...|.+||........ .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3455655 456554 5899999987653222 2789999999999999888 8999999
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--EEEEecCCCCCe--EEEE
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV--YSVC 501 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v--~~i~ 501 (1132)
|+.|++|.++. +.+.....+.+|...+ +++..... .......|+++.+||.+..+ +...++-....+ .+++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~--~cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKEC--VCVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeE--EEEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 4455666787776555 44543333 22223789999999985555 222332222222 3444
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCeEEEEEEcCCCC---EEEEEecCCCCCCeEEEEeCCCCc-
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 575 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 575 (1132)
+.++.+.-+++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +|++++ .|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555444456677788888888865533 34557899999999999987654 455554 48889999874322
Q ss_pred --------------------eee----------eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eeEEEE
Q 001176 576 --------------------IKR----------TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTV 623 (1132)
Q Consensus 576 --------------------~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 623 (1132)
... .+.||.+ .|.++.|+|.+..|++++.|.++.+|...+. --+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 111 1247877 9999999999999999999999999987754 333222
Q ss_pred eC---CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccc
Q 001176 624 DA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 624 ~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
.. .+........-|+|+++.+++-+..|..++|...+. ..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~~----------------------------------- 350 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--TF----------------------------------- 350 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--cc-----------------------------------
Confidence 21 122235788999999999999999999999983222 00
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
|... .-..+|...|+.+++.|.
T Consensus 351 ----------------------------------------------w~~~------------~~iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 351 ----------------------------------------------WTQE------------PVISGHVDGVKDVDWDPS 372 (764)
T ss_pred ----------------------------------------------eeec------------cccccccccceeeeecCC
Confidence 0000 000347788999999999
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeC-Ce
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GK 859 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sd-g~ 859 (1132)
|.+|++.+.|.+-++|---. +... | ..+. ...-| ...++|++|-+....+++|.| ..
T Consensus 373 GeflLsvs~DQTTRlFa~wg-------~q~~------w-----HEia---RPQiH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARWG-------RQQE------W-----HEIA---RPQIH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeecccc-------cccc------e-----eeec---ccccc-cccceeeehccCCceeeeccccee
Confidence 99999999999999884321 1000 1 1111 11226 788999999886666777775 66
Q ss_pred EEEEECCCCe--EEE-----EeeC-----CCCCeEEEEEeCCCCCeEEEEeCCCcE---EEEEc-----------cc---
Q 001176 860 VSLFNMMTFK--VMT-----MFMS-----PPPAATFLAFHPQDNNIIAIGMEDSSV---QIYNV-----------RV--- 910 (1132)
Q Consensus 860 i~vwd~~~~~--~~~-----~~~~-----~~~~i~~l~~sp~~~~~lasg~~dg~v---~iwd~-----------~~--- 910 (1132)
+|+|+....- .+. .+.+ ....|..+-.|. ..-+. --..+|.. ..=.. .+
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn-Ka~~~-~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN-KAFFP-GETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC-CCCcc-cccccccccceeeecccccCchhccCCChHHH
Confidence 8999975320 000 1111 112234444443 11110 01111111 11000 00
Q ss_pred ------ceeeeeeccccCCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 911 ------DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 911 ------~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
...+.++-||...|++++.+|+|+++||++.. ..|++|+..+... .+.+.+|. ..|+.++|
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~F 580 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAF 580 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEE
Confidence 12344678999999999999999999999854 4599999998763 44566776 78999999
Q ss_pred CCCCcEEEE-EeCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc--ceecccCC
Q 001176 980 HNDQTHLLV-VHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL--RFRCRIGP 1054 (1132)
Q Consensus 980 s~dg~~l~~-~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~--~~~~~~~~ 1054 (1132)
||||++|++ +.|+++.+|.. +......+.....|+.-|.++.|+||+.++||+|.|.+|+||....+ +.+.++
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-- 658 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-- 658 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--
Confidence 999999999 89999999998 22222334456788999999999999999999999999999999988 444433
Q ss_pred CccccccccCCCCCCcEEEEeCCCCCC----eEEEEeCCCcEEEEecCCCc
Q 001176 1055 SAYIPTYAVSSNTAHPLVIAPHPSEPN----QIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1055 ~~~~~~~~~~~~~~~v~~~~~~p~~~~----~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
....++..|++++|.|-+.+ .++.|-..|.|.+|+....+
T Consensus 659 -------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 659 -------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred -------chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 23467789999999885443 78899999999999977433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=293.69 Aligned_cols=540 Identities=17% Similarity=0.215 Sum_probs=389.4
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 426 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 426 (1132)
..+-+-|.|..+...+ +.+.+++++...+.. +.+|...|.|++.+||.-++++|-.-
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCccc
Confidence 3456677776433333 466777776533322 67899999999999999999987544
Q ss_pred C--------eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCc--EEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 427 H--------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ--LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 427 g--------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
| .+++||..+-..+. .+..-...|+|++|++-... +..+--+.+..+.+||.+.+......+.....
T Consensus 126 g~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 4 49999977654443 45556678999999985433 22333456778999999999888777777788
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE---ecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|....|+|..+ .++.....+.+.+|+++.+..... +.. ....|.|++|.++|+.+- + |.+|.|.+|+..
T Consensus 203 v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCC
Confidence 89999999863 455555678999999987765442 222 235899999999998764 3 448889999998
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
+.+..+....|.. .|.+++.-.+|. |++|+.|++|..|| ..-+.+...+.+...+.|..++-...+ |++|...+.
T Consensus 276 ~~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNF 350 (626)
T ss_pred CceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccce
Confidence 8888777776666 899999998886 55599999999999 555566666666656677777654333 777777666
Q ss_pred EEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccc
Q 001176 653 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 732 (1132)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1132)
|..=.++++..+..
T Consensus 351 iL~Gt~~~~f~~~v------------------------------------------------------------------ 364 (626)
T KOG2106|consen 351 ILQGTLENGFTLTV------------------------------------------------------------------ 364 (626)
T ss_pred EEEeeecCCceEEE------------------------------------------------------------------
Confidence 65544444311110
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccc
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
.+|......++.+|+..++++++.|+.+++|+-..
T Consensus 365 ---------------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k------------ 399 (626)
T KOG2106|consen 365 ---------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK------------ 399 (626)
T ss_pred ---------------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc------------
Confidence 12556677889999999999999999999996111
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
.+|. . . - ..++.|+.|+|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|
T Consensus 400 ---~~wt--------~-~----~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G 459 (626)
T KOG2106|consen 400 ---LEWT--------K-I----I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DG 459 (626)
T ss_pred ---eeEE--------E-E----e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CC
Confidence 0111 0 0 1 5678999999999 888888 8999999999855544444 488999999999 99
Q ss_pred CeEEEEeCCCcEEEEEcccce-eeee-eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDE-VKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~-~~~~-l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
.+||+|+.|+.|+||.+..+. ...+ -+.|..+|+.+.||+|++++.+.+.|-.|..|....-. ..
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~--~~----------- 526 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK--QI----------- 526 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc--cc-----------
Confidence 999999999999999987543 2222 23345889999999999999999999999999333211 10
Q ss_pred CCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001176 970 PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~ 1049 (1132)
.++..+.|....-. +.....+..|...|..++-+.++++||+|...|.|++|...--...
T Consensus 527 --ts~kDvkW~t~~c~------------------lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 527 --TSVKDVKWATYTCT------------------LGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred --ceecceeeeeeEEE------------------EEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 11223333211100 0001111334667888888999999999999999999998754443
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
-+.+...+|+..+++++|.- +...+++.+.|..|..|++
T Consensus 587 --------A~~he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 --------APSHEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred --------ccceeeccccceeEEEEEee-CCceEEecCCCceEEEEEe
Confidence 23345569999999999998 4456666669999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=312.18 Aligned_cols=556 Identities=16% Similarity=0.225 Sum_probs=385.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
.+..|..++|+|...+ +.++-..|.|++||.+-+.++.. +.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 4578999999999984 77788899999999999988775 778999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.|..|+||+..+.+++. ++.||-+.|..+.|++.-. .|+|+|.|.+|+||++++++++..++||..-|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 7899999999999999988 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCC-----------------------------ceEEecCCCCeEEEEEEcCCCCE
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLG-----------------------------SRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
|+|.. ..++++|.|.+||+||+...+ ....+.+|...|+.++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99987 799999999999999975311 11256788899999999999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCc--eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++|+. |+.|++|.....+ .+.+..+|.. .|.++-|+|..+.+++.|+|+.|++||+...+.++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999985 7779999987544 5667888888 899999999999999999999999999999999999975533
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCC
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 710 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 710 (1132)
..+.++.+|..++++.| .|+.+.+|.++.. +....+
T Consensus 294 RFW~laahP~lNLfAAg-HDsGm~VFkleRE-rpa~~v------------------------------------------ 329 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAG-HDSGMIVFKLERE-RPAYAV------------------------------------------ 329 (1202)
T ss_pred eEEEEEecCCcceeeee-cCCceEEEEEccc-CceEEE------------------------------------------
Confidence 78999999999887765 5556667776533 111111
Q ss_pred CCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeec--
Q 001176 711 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-- 788 (1132)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 788 (1132)
.+..+....+..|+.+|+.+..... ...+.-++. .-..+.++.++|....++.++
T Consensus 330 ---------------------~~n~LfYvkd~~i~~~d~~t~~d~~-v~~lr~~g~-~~~~~~smsYNpae~~vlics~~ 386 (1202)
T KOG0292|consen 330 ---------------------NGNGLFYVKDRFIRSYDLRTQKDTA-VASLRRPGT-LWQPPRSLSYNPAENAVLICSNL 386 (1202)
T ss_pred ---------------------cCCEEEEEccceEEeeeccccccce-eEeccCCCc-ccCCcceeeeccccCeEEEEecc
Confidence 1112222336788888888733322 222222221 235678999999766554443
Q ss_pred ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCC
Q 001176 789 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 868 (1132)
Q Consensus 789 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~ 868 (1132)
.+|...++.+...... ........+ .....++-.+.++--+..-++.++.+-++..
T Consensus 387 ~n~~y~L~~ipk~~~~------------------~~~~~~~~k-----~tG~~a~fvarNrfavl~k~~~~v~ik~l~N- 442 (1202)
T KOG0292|consen 387 DNGEYELVQIPKDSDG------------------VSDGKDVKK-----GTGEGALFVARNRFAVLDKSNEQVVIKNLKN- 442 (1202)
T ss_pred CCCeEEEEEecCcccc------------------cCCchhhhc-----CCCCceEEEEecceEEEEecCcceEEecccc-
Confidence 3466666655432110 000000011 1223333333333222222345566655543
Q ss_pred eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 869 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 869 ~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
+..+.+... ..+..|-+.. .|.+|+. ....|.+||++..+.+..++ -..|.-+.||+|..+++--+. .+|.|.
T Consensus 443 ~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~K-h~i~i~ 515 (1202)
T KOG0292|consen 443 KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSK-HTITIA 515 (1202)
T ss_pred hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhccc-ceEEEE
Confidence 222333322 2334455544 5555543 34479999999888777765 457889999999988877664 468888
Q ss_pred ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEE-EEeCCCCceeecCCCCCCCCCeEEEEEccCCC
Q 001176 949 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS-VYDSKLECSRSWSPKDALPAPISSAIYSCDGL 1027 (1132)
Q Consensus 949 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~-vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~ 1027 (1132)
+.+-.- +...... -.|.+-+|..+|-++.+..+.-=+ +-+-+.+.++++ ..+|.-.+. .|.
T Consensus 516 ~kkL~l------~~sihEt----iriksgawde~gVfiYtT~nHikYal~~GD~GIikTL------d~~iyitkv--~gn 577 (1202)
T KOG0292|consen 516 DKKLEL------LCSIHET----IRIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTL------DKPIYITKV--KGN 577 (1202)
T ss_pred ecchhh------eecchhe----eEeeeceeccCceEEEEehhhhhhhhccCCcceEEec------ccceEEEEe--eCC
Confidence 765311 1111100 234556788887766664321100 111122223332 223322222 577
Q ss_pred EEEEEecCCcEEEEeCCCcc
Q 001176 1028 LVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~ 1047 (1132)
.+++-..|+.+...+++.-+
T Consensus 578 ~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 578 KVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred EEEEEecCCCeEEEeechHH
Confidence 78888888888888876433
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=279.53 Aligned_cols=285 Identities=17% Similarity=0.276 Sum_probs=244.0
Q ss_pred CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEe
Q 001176 355 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 434 (1132)
Q Consensus 355 g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~ 434 (1132)
..-+|++++.|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.. .|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 335899999999999999999998764 34467789999999999999999654 5999999
Q ss_pred cCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE
Q 001176 435 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 514 (1132)
Q Consensus 435 ~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 514 (1132)
+++..- ...++.+|...|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++..+|+. .-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998753 4557899999999999999999 89999999999999999977666664 77999999999876 789999
Q ss_pred ecCCeEEEEEcCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC------ceeeeeccccCCc
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 587 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 587 (1132)
..+|.|++||+....+...+.. ....|.+++..|||.+++.+. ..|..++|++-.+ +++..++.|.. -
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 9999999999998766655444 345899999999999999885 3788999998654 35566777777 7
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 588 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 588 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
+..+.+||++++|+++|.|.+++||+.++. +....+.+| ...+..++||.||.+|++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 888999999999999999999999999988 444445544 558999999999999999999999999999999 7777
Q ss_pred ecccccc
Q 001176 667 MLEGRAM 673 (1132)
Q Consensus 667 ~~~~~~~ 673 (1132)
...+|..
T Consensus 295 qy~gh~K 301 (311)
T KOG0315|consen 295 QYQGHHK 301 (311)
T ss_pred ecCCccc
Confidence 7777754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=300.33 Aligned_cols=464 Identities=16% Similarity=0.212 Sum_probs=348.6
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..++..|.++.|+|...+++++-.+|.|.||+.++...++ .+.-..-+|++..|-+--+ .+++|+.|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34488999999999999999999999999999999987766 4555678999999998777 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcC-CCCEEEEEec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 558 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 558 (1132)
..+++.++.|.+|.+-|.+++.+|.. .+++++|.|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 89999999999999999865 45668999999999999999 5578999987
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
|++|++|.+.+..+..++++|.. .|+|+.+-+.| .++++|+.|..|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 78899999999999999999998 89999998755 7999999999999999999999999998866 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|.-.++++|+.||+++||+..+- ++...+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997665 22222211
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 796 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 796 (1132)
.-+++.+++..+.+..+++|...|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 12345666666666667777777766541
Q ss_pred eeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeC--CeEEEE------ECCCC
Q 001176 797 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLF------NMMTF 868 (1132)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sd--g~i~vw------d~~~~ 868 (1132)
+ ....-.+.+++.|+.+-+... -.+.+- ++..|
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~Dg 337 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDG 337 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCC
Confidence 1 112223445555554443321 112221 22233
Q ss_pred eEEE----EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCc
Q 001176 869 KVMT----MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944 (1132)
Q Consensus 869 ~~~~----~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~ 944 (1132)
+.+. .+-...--...++-+| +|++++++ .||.-.||..-. --..+.+.-....|++|....+.--.++.
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala-----~RnK~fG~~~eFvw~~dsne~avRes~~~ 410 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALA-----LRNKAFGSGLEFVWAADSNEFAVRESNGN 410 (794)
T ss_pred ccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeee-----hhhcccccceeEEEcCCCCeEEEEecCCc
Confidence 3221 1111111235678889 88888655 688888886322 11224455677899999888888888888
Q ss_pred EEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEc
Q 001176 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYS 1023 (1132)
Q Consensus 945 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s 1023 (1132)
|+++ ++.+..+... .-..+.+--.|.+|.+..++.+++||. ++..++.+. -....+.|+
T Consensus 411 vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~------v~~k~v~w~ 470 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIE------VTSKHVYWS 470 (794)
T ss_pred eEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEcccceEEEEEe------eccceeEEe
Confidence 9888 5444222111 011122233456677788999999998 777777763 345678999
Q ss_pred cCCCEEEEEecCCcEEEEeC
Q 001176 1024 CDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 1024 ~dg~~las~~~dg~i~vwd~ 1043 (1132)
.+|.+++.++.| ..+++.+
T Consensus 471 d~g~lVai~~d~-Sfyil~~ 489 (794)
T KOG0276|consen 471 DNGELVAIAGDD-SFYILKF 489 (794)
T ss_pred cCCCEEEEEecC-ceeEEEe
Confidence 999999988855 4455443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=279.90 Aligned_cols=296 Identities=17% Similarity=0.202 Sum_probs=248.2
Q ss_pred cccccceEEEEEecCC-ceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 766 SIAASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
.+|.+.|+.++..+.+ ..+++++.|..+.+|++... |.+.|.++.. +.| | ...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--H-sH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--H-SHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--c-ceEecceE
Confidence 3489999999999874 56778889999999998653 3344554443 666 7 77999999
Q ss_pred EeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc-ccC
Q 001176 845 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQN 922 (1132)
Q Consensus 845 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 922 (1132)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ +.+.+++|+.|.+|.+|++........... |.+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999999 99999999999999999999999999999999 899999999999999999876544443332 378
Q ss_pred CeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC
Q 001176 923 RITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 999 (1132)
Q Consensus 923 ~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 999 (1132)
-|+|+.|+|. ..+++++|.|++|++||+.+.+ ....+.||. ..++.+++||||...++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 6899999999999999999866 445566666 68999999999999999 57999999999
Q ss_pred -CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCC
Q 001176 1000 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1078 (1132)
Q Consensus 1000 -~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 1078 (1132)
.++.+..+ .|...|.+++|+|+...|+.+. +..|+|||++++..+..+.+....+ .........+.++|++
T Consensus 222 ~~~k~lysl----~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~--s~~~~~~~clslaws~- 293 (315)
T KOG0279|consen 222 NEGKNLYSL----EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP--SSKAGDPICLSLAWSA- 293 (315)
T ss_pred cCCceeEec----cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc--ccccCCcEEEEEEEcC-
Confidence 66665554 3478999999999988777666 5669999999999998887664333 2234456778999999
Q ss_pred CCCeEEEEeCCCcEEEEecCC
Q 001176 1079 EPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1079 ~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
||..|++|..|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 999999999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=307.72 Aligned_cols=474 Identities=16% Similarity=0.239 Sum_probs=339.5
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..-+..|..++|+|...+++++-..|.|++||.+-+.++. .+..|.++|..++|+|++. +++|||.|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 33456789999999999999999999999999999988776 6889999999999999999 999999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
..+.+++.++.||-+-|..+.|++.- .+|+++|.|.+|+||++.+.+++..+++|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999876 79999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEeCCCCc-----------------------------eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 561 EGESHLVEWNESEGA-----------------------------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..+++|+.|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 7789999984210 1234567776 7999999999999999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccc
Q 001176 612 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 691 (1132)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1132)
|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||++.. ..++.++.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------------------- 290 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------------------- 290 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec---------------------
Confidence 99986554333333445668999999999999999999999999999766 33333322
Q ss_pred ccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccc
Q 001176 692 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 771 (1132)
Q Consensus 692 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1132)
..++
T Consensus 291 ----------------------------------------------------------------------------endR 294 (1202)
T KOG0292|consen 291 ----------------------------------------------------------------------------ENDR 294 (1202)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 2345
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 851 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~ 851 (1132)
...++.+|....+ +++.|+-+.||.++. +.++.++ .++.
T Consensus 295 FW~laahP~lNLf-AAgHDsGm~VFkleR------------------------------------Erpa~~v----~~n~ 333 (1202)
T KOG0292|consen 295 FWILAAHPELNLF-AAGHDSGMIVFKLER------------------------------------ERPAYAV----NGNG 333 (1202)
T ss_pred EEEEEecCCccee-eeecCCceEEEEEcc------------------------------------cCceEEE----cCCE
Confidence 5678888888844 455565666776531 3344444 3445
Q ss_pred EEEeeCCeEEEEECCCCeE--EEEeeCC---CCCeEEEEEeCCCCCeEEEEeCC-CcEEEEEcccceeeeeec----ccc
Q 001176 852 VMSASGGKVSLFNMMTFKV--MTMFMSP---PPAATFLAFHPQDNNIIAIGMED-SSVQIYNVRVDEVKTKLK----GHQ 921 (1132)
Q Consensus 852 la~~sdg~i~vwd~~~~~~--~~~~~~~---~~~i~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~~~~l~----~h~ 921 (1132)
|....|..|+-+|+.+.+- +..++.. ..++.++.|+|..+..+++...| |.--++.+..... .... ...
T Consensus 334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~-~~~~~~~~~k~ 412 (1202)
T KOG0292|consen 334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSD-GVSDGKDVKKG 412 (1202)
T ss_pred EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCccc-ccCCchhhhcC
Confidence 5555589999999987543 3444433 36788999999555555554444 4444554443211 0000 011
Q ss_pred CCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-C
Q 001176 922 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-K 1000 (1132)
Q Consensus 922 ~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~ 1000 (1132)
....++-.+ ..++.+---.+..+.+=++.+....+ +... ..+..+-+.-+|.+|+. +...|.+||+ .
T Consensus 413 tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtkk---l~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQq 480 (1202)
T KOG0292|consen 413 TGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTKK---LLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQQ 480 (1202)
T ss_pred CCCceEEEE-ecceEEEEecCcceEEecccchhhhc---ccCc-------ccccceeeccCccEEEE-cCCeEEEEEeec
Confidence 122233222 22333323334455555555422111 1111 12334455555554443 5567888888 4
Q ss_pred CCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 1001 LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1001 ~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
...+..+. ...+.-+.||+|..++|.-+ -.+|.|.+-.
T Consensus 481 ~~~~~si~-----~s~vkyvvws~dm~~vAll~-Kh~i~i~~kk 518 (1202)
T KOG0292|consen 481 KKKVGSIK-----VSKVKYVVWSNDMSRVALLS-KHTITIADKK 518 (1202)
T ss_pred ceEEEEEe-----cCceeEEEEcCccchhhhcc-cceEEEEecc
Confidence 44444443 46788888888887766555 3455555543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=286.45 Aligned_cols=339 Identities=18% Similarity=0.283 Sum_probs=290.5
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd 524 (1132)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+. +|.+|+||..+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 6889999999999999777 899999999999999999999999999999999999976 459999999999999999
Q ss_pred cCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE
Q 001176 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1132)
..++.....+......+.-+.|+|-+..|++|+. ||.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988878888999999999999999864 88899999999889999999887 899999999999999999
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 684 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1132)
.||+|++||+.+++++..+....+ ....++.++..+..++.|+.++.+.+-+..++ +.+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC--------------
Confidence 999999999999999999875543 36789999999999999999999998877666 22211111
Q ss_pred CCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecC
Q 001176 685 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 764 (1132)
Q Consensus 685 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 764 (1132)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 765 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 765 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
++..+. ....+....|..+.
T Consensus 274 ---------------~~~~l~---------------------------------------------~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 274 ---------------TVPELK---------------------------------------------PSQEELDESVESIP 293 (399)
T ss_pred ---------------CCcccc---------------------------------------------ccchhhhhhhhhcc
Confidence 000000 00000033445555
Q ss_pred EeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC
Q 001176 845 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 923 (1132)
Q Consensus 845 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 923 (1132)
++..-.+.|+|+ ||+|.|||+.+.++...+. |...|+.+.|-+ ..+|++++.||.|++||.++|+++.++.||...
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999998877655554 888899999987 468899999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001176 924 ITGLAFSPTLNALVSSGADAQLCMWSID 951 (1132)
Q Consensus 924 V~~l~~spdg~~l~s~~~D~~i~iwd~~ 951 (1132)
|.+++++|++++++|+|.|++.++++..
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=272.45 Aligned_cols=295 Identities=14% Similarity=0.241 Sum_probs=252.0
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc--eeeeeccccCC
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 586 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 586 (1132)
-+|++++.|.+||+|...++.+...+....+.|..+...|+++.|++++ ...|++||+++++ ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 6899999999999999999999999999999999999999999999986 5669999999875 6889999987
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
.|.++.|.-+|+.+++||+||+++|||++...+...+... .+|+++..+|+...|++|..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 8999999999999999999999999999996665555433 58999999999999999999999999999766 2111
Q ss_pred eccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceee
Q 001176 667 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 746 (1132)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 746 (1132)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred eecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcc
Q 001176 747 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 826 (1132)
Q Consensus 747 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 826 (1132)
.|+ ....|+++.+.|||..++++...|...+|++..... .+....
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P 207 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEP 207 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceE
Confidence 111 235689999999999999999999999999864221 111111
Q ss_pred cccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCC-eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 001176 827 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 904 (1132)
Q Consensus 827 ~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~ 904 (1132)
...++. | .+.+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|...+...+||. ++.+|++|+.|+.++
T Consensus 208 ~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 208 VHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred hhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 111333 6 88899999999999999998 999999999988 77778899999999999999 999999999999999
Q ss_pred EEEcccceeeeeeccccCCeeEEEEc
Q 001176 905 IYNVRVDEVKTKLKGHQNRITGLAFS 930 (1132)
Q Consensus 905 iwd~~~~~~~~~l~~h~~~V~~l~~s 930 (1132)
+||+..++.+....+|.....|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999888887753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=293.44 Aligned_cols=309 Identities=19% Similarity=0.289 Sum_probs=271.4
Q ss_pred ecCCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccc
Q 001176 317 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 317 ~~~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
..|.+..-....+-..|....+...|..+|+.+-|+|+-. ++++++.|++|++||..+|+....
T Consensus 82 g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~--------------- 145 (406)
T KOG0295|consen 82 GDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS--------------- 145 (406)
T ss_pred CCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh---------------
Confidence 3344433333333334444444455999999999999987 899999999999999999998654
Q ss_pred cccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 397 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
+.||...|.+|+|+..|++||+++.|-.+.+||.++. ..+...+.+|...|.+++|-|.|. +|++++.|.+|
T Consensus 146 ----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~ti 217 (406)
T KOG0295|consen 146 ----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTI 217 (406)
T ss_pred ----hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccce
Confidence 8899999999999999999999999999999999873 333346789999999999999998 89999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-------
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------- 549 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~------- 549 (1132)
+.|++.+|-++++|.+|...|..++. ..||.++++++.|.++++|-+.+..+...+..|..+|.+++|.|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence 99999999999999999999999987 457799999999999999999999999999999999999999773
Q ss_pred --------CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 001176 550 --------GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 550 --------~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
+.++.+++. |++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||++++++..
T Consensus 296 ~at~~~~~~~~l~s~Sr----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSR----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred hccCCCCCccEEEeecc----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 246666654 88899999999999999999988 99999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+..|.+ -++++.|+.+..++++|+-|.++++|.-
T Consensus 371 ~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 9998866 7999999999999999999999999963
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=296.42 Aligned_cols=281 Identities=18% Similarity=0.267 Sum_probs=254.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....|++++|+.+|. +||+|+.||.++||+...+.... +..|+++|.++.|+.+|+||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~~t--------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLIST--------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchhhhh--------------------hhccCCceEEEEEcCCCCEEE
Confidence 457899999999998 89999999999999987554322 677999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+++.|+++.+||..++.... .+.-|..+-.+|.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987554 3556888878899987776 89999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC---------EEEEEecCCCCCCeEEEEeCC
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|+|.+ .+|+++|.|+++++|.+........+..|...|+.+.|+|+|. .+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 98865 8999999999999999999889999999999999999999653 5777765 8899999999
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
.+.++.+|..|.. +|.+++|+|+|.++++|+.||.|.+|+..+++.++...... .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999987653 5899999999999999999999
Q ss_pred EEEEEcC
Q 001176 653 IKILANS 659 (1132)
Q Consensus 653 i~iw~~~ 659 (1132)
+++.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=298.84 Aligned_cols=343 Identities=20% Similarity=0.296 Sum_probs=276.6
Q ss_pred ccCCCCCCCCcccccccchhhHhhhcccCCcceeeecCCCCCCc-eecc----CC----cccceEEee-c-CCCCeeEEE
Q 001176 282 KHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPN-VYSQ----DD----LTKTVVRTL-N-QGSNVMSMD 350 (1132)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~----d~----~~~~~~~~l-~-h~~~V~~~~ 350 (1132)
++.+.|.+++.++|...--.+...+.....-.....-|+..+.. .+.. ++ .+.+.+++- . -+-.|..|.
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~~v~ 103 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVNVVR 103 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCCcccccccceEeccccccccceeeEE
Confidence 45667777889999988666555554433311222222222211 1111 11 122222222 2 456899999
Q ss_pred EccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEE
Q 001176 351 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH 430 (1132)
Q Consensus 351 ~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~ 430 (1132)
|.|+|++ |++|+..|.+.+|+..+-. ...++..|..+|+++.||++|.++++|+.+|.|+
T Consensus 104 WtPeGRR-Lltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 104 WTPEGRR-LLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred EcCCCce-eEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 9999996 8899999999999974321 1123678999999999999999999999999999
Q ss_pred EEEecCCCceeeeeeeecc-cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCcc
Q 001176 431 LYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 431 iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 509 (1132)
+|+..-... + .+.+| ...|++++|+|++. .++||+.||+|+|||....+....+.||.-.|.++.|+|.. .
T Consensus 164 yWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--g 235 (464)
T KOG0284|consen 164 YWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--G 235 (464)
T ss_pred ecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--c
Confidence 999876432 2 34454 48999999999888 79999999999999999999989999999999999999987 8
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
+|+++|.|+.|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.+.++++|.. .+.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv~ 310 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DVT 310 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hhe
Confidence 9999999999999999999999999999999999999999999999975 77899999999999999999998 899
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 590 VVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 590 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++.|+|-. ..|.+|+.||.|..|.+...+++..+. +.+...|.+++|+|=|.+|++|+.|.++++|.-
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999965 566779999999999998667666664 234558999999999999999999999999974
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=287.55 Aligned_cols=295 Identities=18% Similarity=0.272 Sum_probs=265.7
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
.|.+..+.+. |.+.|.|+++.|... .+++|+.|+++.|||+.+|+...+ +.||...|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3566777788 999999999999987 799999999999999999988764 7899999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+++|+--.|+++++.|+.|+-||++..+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999988777 5789999999999999988 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.||..+|.++.+.|.. ..+++||.|++|++||++.++....+..|...+.+++.+|....+++++. ..|..|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998765 68999999999999999999999999999999999999999999999874 2399999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe---CC---CCCCCcceEEEcCCCCEE
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---AD---GGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~~~~s~~~~~l 644 (1132)
+..|..+..+.+|.. .+++++.+.|+ ++++|+++|.+.+||.+++...+... .. .....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999887 89999988775 78899999999999999987665552 11 123468899999999999
Q ss_pred EEEeCCCcEEEEEcCC
Q 001176 645 AVTTSDNGIKILANSD 660 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~ 660 (1132)
++|..|.+|++|.-..
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999997543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=268.24 Aligned_cols=292 Identities=20% Similarity=0.305 Sum_probs=239.1
Q ss_pred eEEeec-CCCCeeEEEEccC-CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spd-g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
.++++. |++.|+.++|+|- |. +||+|+.|+.|+||+...+....- ...+-.+|+..|.+++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 356666 8999999999999 87 899999999999999985332110 01112479999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eEEEEe
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 490 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~ 490 (1132)
+|.|++||+|+.|.++.||.-..+ .+.+..+++||...|.|++|+++|. +||||++|+.|-||.+..+ .++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999997754 4666778999999999999999999 9999999999999998743 567889
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
+.|...|..+.|+|.. .+|+++|.|++|++|+-... .+...+.+|...|.+++|++.|..|++++. |++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999987 79999999999999987632 356788999999999999999999999974 88899
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE-----eCCCCCCCcceEEEcC-CC
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-----DADGGLPASPRLRFNK-EG 641 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~s~-~~ 641 (1132)
+|-.. ..+.+.+...+..+.|. ...+++++.|+.|+++.-...-.-..+ ..+.|...|++++|+| -.
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 99755 23333344478889998 457999999999999976642111111 1223344899999999 47
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 001176 642 SLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~ 659 (1132)
++|++|++||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=276.89 Aligned_cols=329 Identities=14% Similarity=0.191 Sum_probs=278.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|+++|.+++.+|+.+++|+|+.|..-.+|++.++.... .+.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 66799999999999999999999999999999999998544 6889999999999999999 999999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
..++.....+...-..+.-+.|+|.. .+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|++++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999988887667778889999955 89999999999999999998888899999999999999999999999974
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC--------C-CCCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD--------G-GLPA 631 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~-~~~~ 631 (1132)
+++|++||+.++.++..+.+.......++.++..+..++.|+.++.+++-+..+++.+...... . ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 8899999999999999988766667888999999999999999999999999998888776531 0 1112
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
|-++.++..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 333334444455666666666666665322
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.+ .. .. .| ...|+.+.|-+ ..+|+++. +|+|+.||..+|++
T Consensus 319 ----------~~----------------------R~--~c--~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 319 ----------TL----------------------RH--IC--EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred ----------hh----------------------he--ec--cC-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 00 00 00 15 67788888888 56677666 99999999999999
Q ss_pred EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc
Q 001176 871 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 871 ~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~ 909 (1132)
+.++.+|...|.+++++| +++++++++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=277.41 Aligned_cols=495 Identities=15% Similarity=0.209 Sum_probs=364.8
Q ss_pred cccccccchhhHhhhcccCCcceeeecCCCCCCceec---------------cCCcccceEEeec-CCCCeeEEEEccC-
Q 001176 292 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYS---------------QDDLTKTVVRTLN-QGSNVMSMDFHPQ- 354 (1132)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~---------------~d~~~~~~~~~l~-h~~~V~~~~~spd- 354 (1132)
.+.|+..+..|-....+...+.|++..||.-.++.+. ||..+...+..+. -...|+|++||+-
T Consensus 87 ~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~ 166 (626)
T KOG2106|consen 87 GVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKIN 166 (626)
T ss_pred EEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccC
Confidence 5666666655555666777899999999876655433 3334444555555 6779999999983
Q ss_pred -CCeEEEE-EcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEE
Q 001176 355 -QQTILLV-GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 432 (1132)
Q Consensus 355 -g~~lla~-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iw 432 (1132)
|..+++. -+.+..+.|||+..+..... .+.....|....|+|.+..|+.....+.+.+|
T Consensus 167 ~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 167 GGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred CCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 4433333 24567899999988766542 33456678899999976655555577889999
Q ss_pred EecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE
Q 001176 433 TYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511 (1132)
Q Consensus 433 d~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l 511 (1132)
+.+++...+....++.+. ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+ ..|
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---Gtl 301 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTL 301 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccE
Confidence 999988877666666543 5799999999998 899999999999999888887777799999999998654 367
Q ss_pred EEEecCCeEEEEEcCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 512 FSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 512 ~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
++|+.|+.|..|| ..-+.+. .+...-+.|+.++-...+ |+.+.. .+.|..=.++++-. ....+|.+ ...
T Consensus 302 lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elw 372 (626)
T KOG2106|consen 302 LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELW 372 (626)
T ss_pred eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-cee
Confidence 7799999999999 3333333 344445577766643333 555543 33454444444433 33456666 788
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 590 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
.++.+|+.+++++++.|+.+++|+ ..+++.+.... .++.++.|+|.| .++.|+..|...+.|.++. .++..
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~-- 443 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTI-- 443 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEE--
Confidence 899999999999999999999999 44555444332 267899999999 9999999999999998774 32221
Q ss_pred ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeec
Q 001176 670 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 749 (1132)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 749 (1132)
|.
T Consensus 444 -~~----------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 444 -HT----------------------------------------------------------------------------- 445 (626)
T ss_pred -Ee-----------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCccccc
Q 001176 750 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 829 (1132)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 829 (1132)
...++..+.|+|+|..+++++.|+.|++|.+... |..+...
T Consensus 446 ------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~ 486 (626)
T KOG2106|consen 446 ------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRV 486 (626)
T ss_pred ------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEe
Confidence 2356889999999999999999999999987532 2222221
Q ss_pred CCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEE--------------e----eCCCCCeEEEEEeCCC
Q 001176 830 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM--------------F----MSPPPAATFLAFHPQD 890 (1132)
Q Consensus 830 ~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~l~~sp~~ 890 (1132)
-.. + ..+|+.+.||+|++++.+-+ |-.|-.|.....+.+.. | ..+...|..++-+. .
T Consensus 487 ~k~--~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~ 562 (626)
T KOG2106|consen 487 GKC--S-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-C 562 (626)
T ss_pred eee--c-CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-h
Confidence 111 4 57899999999999999998 88899995432221111 1 12455677778887 8
Q ss_pred CCeEEEEeCCCcEEEEEcccce---eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 891 NNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 891 ~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
.+++|+|.+.|.|++|...-.+ ....+.+|++-|++++|.-+...+++.+.|..|..|++
T Consensus 563 ~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 563 EKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 8999999999999999876433 34567899999999999999999999999999999986
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=273.99 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=249.3
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|++.|..+.|.+|++.|
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCEE
Confidence 3999999999999998 79999999999999976443211 1267999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++++.|.+|+.||+++|++.+ .+++|..-|+.+.-+.-|.. ++.|++.||++++||+++...++++. ....++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999999776 67899999999996656665 78999999999999999998888775 45678999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC----Cce
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 576 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 576 (1132)
.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+. .++
T Consensus 181 ~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 986544 78999999999999999999999999999999999999999999999876 78899999974 345
Q ss_pred eeeeccccCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 577 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 577 ~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
+..+.++... ....++|+|++..+-+|+.|..+++||......+..+++|.+ .|++++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7778776431 345689999999999999999999999999999999988755 89999999999999999999998
Q ss_pred EEEE
Q 001176 654 KILA 657 (1132)
Q Consensus 654 ~iw~ 657 (1132)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-30 Score=274.29 Aligned_cols=550 Identities=12% Similarity=0.127 Sum_probs=387.1
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecc-cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
-..+|.++|||.+.+.||.+-.||.|.||++..+=... ..+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 45689999999999999999999999999999854333 345555 45899999996664 8899999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+++..+.+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+.-..+++.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999876 789999999977777776655443 34445679999999999999999985
Q ss_pred CCCCeEEEEeCCCCceeeeec----c-c--cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 561 EGESHLVEWNESEGAIKRTYS----G-F--RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~----~-~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
|+.|++||..++..+.... + . ...-|.++.|-.+ ..+++|..-|.|.+||...+.+++.+..|.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 8899999999988766221 1 1 1224677777755 4789999999999999999999999988855 799
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCC
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 713 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 713 (1132)
+++.++++.++++++.|+.|..|...++... ++.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999998887665221 000
Q ss_pred CCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccccee
Q 001176 714 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 793 (1132)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 793 (1132)
. .+...|...++++++.++ .+++++.|.++
T Consensus 284 ------------------------------------~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 284 ------------------------------------N------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred ------------------------------------e------------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence 0 001226778888988887 78999999888
Q ss_pred EEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe----
Q 001176 794 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK---- 869 (1132)
Q Consensus 794 ~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~---- 869 (1132)
.+-.....+. .+ .. +.. .. . ... -+...|..++++.-.+..+.+|.+.+..
T Consensus 314 ~i~~s~~~~~--------------~~---h~-~~~-~~---p-~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~ 368 (691)
T KOG2048|consen 314 AICSSREFKN--------------MD---HR-QKN-LF---P-ASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGE 368 (691)
T ss_pred EEccccccCc--------------hh---hh-ccc-cc---c-ccc--eeecCccceEEEEeccccccceeccCcccccc
Confidence 8753321000 00 00 000 00 0 111 2334455555555567888889886651
Q ss_pred -----EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-----eccccCCeeEEEEcCCCCEEEEE
Q 001176 870 -----VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-----LKGHQNRITGLAFSPTLNALVSS 939 (1132)
Q Consensus 870 -----~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~V~~l~~spdg~~l~s~ 939 (1132)
+.+-.......|+|.+.|| +|+++|.++-. .++||.+.....+.. .....-....+.|+-|+..++.+
T Consensus 369 ~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 369 YNYIHLLKLFTKEKENISCAAISP-DGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred cChhhheeeecCCccceeeeccCC-CCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 1222223445699999999 99999987644 688888875322222 22223356788899999888888
Q ss_pred c-CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCe
Q 001176 940 G-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1017 (1132)
Q Consensus 940 ~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i 1017 (1132)
+ .+..+.+.+..+........+... .....++.++.|++|+|+++ +..+.|.+|++.+.....+.... ...|
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--n~~v 520 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--NIDV 520 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--Ccce
Confidence 7 677788888877553332222211 12267899999999999999 68899999999555544443222 5789
Q ss_pred EEEEEcc-CCCEEEEEecCCcEEEEeCCCcceecccCCC-ccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEE
Q 001176 1018 SSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPS-AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1095 (1132)
Q Consensus 1018 ~~i~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW 1095 (1132)
++++|+| +-..|+.+..++.|+-||++..+ +.++... .+.-......-...+..+.|+|.+...++. -..+-+++-
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~-~~a~w~~~i 598 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIV-YDAHWSCLI 598 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEE-EcCcEEEEE
Confidence 9999995 56678889999999999995433 3333221 111111122333456677777755444443 334555555
Q ss_pred ecC
Q 001176 1096 EPS 1098 (1132)
Q Consensus 1096 ~~~ 1098 (1132)
|..
T Consensus 599 d~~ 601 (691)
T KOG2048|consen 599 DFS 601 (691)
T ss_pred ecC
Confidence 553
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=275.40 Aligned_cols=246 Identities=16% Similarity=0.284 Sum_probs=228.8
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
++.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+--. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478999999999999999999999999999999999987554 7889999999999999888 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
|++..+.++.+.||-..|.+++.+|.- +.|++|+.|.++|+||+++...+..+.+|...|.++.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999876 79999999999999999999999999999999999999998899999975
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
|++|++||++.|+...++..|.. .+.+++.+|....|++++.| .|+-|++..+..+..+.+|.. -|++++.+.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeecc
Confidence 88899999999999999998887 89999999999999998877 599999999999988877754 789999988
Q ss_pred CCCEEEEEeCCCcEEEEEcCCc
Q 001176 640 EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+ ++++|++.|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 87 7888999999999999988
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=264.81 Aligned_cols=251 Identities=17% Similarity=0.291 Sum_probs=217.9
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++..... ....+++|.+.|..+.|.+|+. .|++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 4789999999999999999999999999999999765432 2336789999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
|+++|+.++.+++|..-|++++.... +-.++.+++.|+++++||++.......+. ..-.++++.|..++..+++++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 99999999999999999999984332 22678899999999999999877766553 3457899999999999999987
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----CeeEEEEeCCCCCC--Ccc
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP--ASP 633 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v~ 633 (1132)
|+.|.+||++.+....++.||.+ .|+.+..+++|.++.+-+.|.++++||++- .+++..+.++.+.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 66699999999999999999999 999999999999999999999999999874 34466666654432 234
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++|+|+++.+.+|+.|..+.+||....
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc
Confidence 6789999999999999999999998654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=274.45 Aligned_cols=255 Identities=22% Similarity=0.329 Sum_probs=235.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|..+|+.+-|.|+-..+++++.|++|++||..+++... .++||...|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
..+ .++++.+.+|+..|.+++|.|.+ .++++++.|.+|+.|++.++-++..+.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67788888999999999999976 89999999999999999999999999999999999999999999999974
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC---------------CCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---------------RNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
+.++++|-..++++...+..|.- +|.+++|.|. ++++.+++.|++|++||+.++.++.++.
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 88899999999998888998887 8999999773 2588899999999999999999999999
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
+|.. .|..++|+|.|++|+++.+|+++++||+.+. ++...+..
T Consensus 332 ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~a 374 (406)
T KOG0295|consen 332 GHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEA 374 (406)
T ss_pred cccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCC
Confidence 8865 8999999999999999999999999999988 66655543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=311.84 Aligned_cols=291 Identities=20% Similarity=0.353 Sum_probs=253.4
Q ss_pred EEeec--CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc--cccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 337 VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 337 ~~~l~--h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..++. +...|.|+.|||+|+ .+++++.|+.+++|+..+++ .... +.+|...|.+++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 44444 478999999999999 59999999999999997665 2221 468999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecC-CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
|+|||+++++|+.|++|+|||+.. +..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 999999999999999999999943 34444 7889999999999999997 89999999999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--eEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
+|.+.|++++|.++ +.+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.++
T Consensus 286 ~hs~~is~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAFSPD--GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEECCC--CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999775 4899999999999999999988 3445544444 5999999999999999975 77899
Q ss_pred EEeCCCCceeeeeccccCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001176 568 EWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1132)
+||+..+..+..+.+|... .+.+...++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.+++..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 9999999999999999874 34445567889999999999999999999999999998885 45789999999999999
Q ss_pred EEe--CCCcEEEEEcC
Q 001176 646 VTT--SDNGIKILANS 659 (1132)
Q Consensus 646 ~~~--~dg~i~iw~~~ 659 (1132)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 78999999753
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=253.67 Aligned_cols=288 Identities=14% Similarity=0.217 Sum_probs=248.3
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
|.+..+.|. +.++|.++.|+-||+ +..+++.|.+|++|+...|.++.+ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 444566777 899999999999999 577778899999999999998876 77999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC--CeEEEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYT 489 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~--~~~~~~ 489 (1132)
+.+.|+..+++|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ .++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999777 6899999999999999998 999999999999999875 467888
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
+....+.|.++.+.. ..|++|+.||++|.||++.+...... -+.+|++++|++|++..++++. ++++++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 888889999998743 67999999999999999987655433 3568999999999999988876 7889999
Q ss_pred eCCCCceeeeeccccCCce-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 570 NESEGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
|-.+|+++..+++|..... ..++++.....+++|++||.|++||+.....+..+..+.. ..|.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence 9999999999999976432 2466777778999999999999999999999999987754 2478999999777777665
Q ss_pred CCCcEEEEE
Q 001176 649 SDNGIKILA 657 (1132)
Q Consensus 649 ~dg~i~iw~ 657 (1132)
.. .+..|-
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 44 455554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=288.50 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=252.2
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCCCCcCeE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+|...+.++. |+..|+++.|.|-.-+||++|+.|+.|+||++.. ++++.+ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 4677888888 9999999999994335999999999999999987 666654 789999999
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+++|+++|..+.+++.|+.|++||+++|+++... . ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---H-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEE---e-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 9999999999999999999999999999877632 2 2457899999999955 788999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
+..|-+.|..+.|.+.+ ..+++.+.|+++++|+.+....... ...+.....++..+|++++++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999997754 8999999999999999987766553 3334457789999999999998865 778999
Q ss_pred EeCCCC---ceeeeeccccCCc-eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCE
Q 001176 569 WNESEG---AIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 643 (1132)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 643 (1132)
+.+... ...+.|.+|.... -..+.|||||.+|++|+.||.+.+||.++-+.+..++.|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986532 3445677876432 34589999999999999999999999999999999998844 899999999 6678
Q ss_pred EEEEeCCCcEEEEE
Q 001176 644 LAVTTSDNGIKILA 657 (1132)
Q Consensus 644 l~~~~~dg~i~iw~ 657 (1132)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=274.40 Aligned_cols=294 Identities=16% Similarity=0.276 Sum_probs=234.2
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
++..|.+.|+-+.||++|+|||+++.|.+..+|++.....++...++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3778999999999999999999999999999999987777777789999999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 480 DVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 480 d~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
|+.+|...+.+.. |...+.+++|.|++ ..+++|+.|+++..|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~w----------------------------------- 339 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMW----------------------------------- 339 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEe-----------------------------------
Confidence 9999998766642 33455555554432 445555555555554
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
|+. |..+..+++-....|.+++.++||+++++.+.|..|++++..+......+..+ .+|++.+.|
T Consensus 340 -----------dlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS 404 (519)
T KOG0293|consen 340 -----------DLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSIS 404 (519)
T ss_pred -----------cCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEc
Confidence 433 33334444444446888999999999999999999999999876666555433 379999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 718 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1132)
.|++++++.-.+..+++||++.. .+++.+.||...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------- 439 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------- 439 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------
Confidence 99999999999999999999865 666666555321
Q ss_pred cCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEee
Q 001176 719 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKW 798 (1132)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~ 798 (1132)
.+++-.+
T Consensus 440 ---------------------------------------------------------------~fiIrSC---------- 446 (519)
T KOG0293|consen 440 ---------------------------------------------------------------HFIIRSC---------- 446 (519)
T ss_pred ---------------------------------------------------------------ceEEEec----------
Confidence 1111111
Q ss_pred ccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCC
Q 001176 799 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 877 (1132)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 877 (1132)
+.+ .+..++|+|+ |++|+||+..+++++.++.||
T Consensus 447 -------------------------------Fgg--------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 447 -------------------------------FGG--------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred -------------------------------cCC--------------CCcceEEecCCCceEEEEEccCCceeEeecCC
Confidence 111 2567999999 999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
...|+|++|+|.+..++|+|++||+|+||....
T Consensus 482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 482 SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999998899999999999999997653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=301.69 Aligned_cols=247 Identities=17% Similarity=0.336 Sum_probs=228.1
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC----------------------------ceeeeeeeecccCCEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG----------------------------ELRQHLEIDAHVGGVND 455 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~----------------------------~~~~~~~l~~h~~~v~~ 455 (1132)
....++|..||+|++.||.|..|..|++|.+...+ ......++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34579999999999999999999999999987311 01123458899999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 535 (1132)
+.|+|+.+ +|++|+.|+++++|.+.+..++..++||..||+.+.|+|. |-+++|+|.|++.++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 8999999999999999999999999999999999999875 4999999999999999999999999999
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
+|.+.|.|+.|+|+..|+++|+. |.++++||+.+|..++.|.||.+ +|.+++|+|+|.+|++|++||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999975 78899999999999999999988 99999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 616 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++.+..+..| .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 458999999999999999999999999998754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=273.76 Aligned_cols=272 Identities=22% Similarity=0.331 Sum_probs=235.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
...+|+|+.+..+ .+++|..|++|+|||.++.+++.. +.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence 3468999998654 489999999999999998887653 8899999999999 677999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---EEEecCCCCCeE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 498 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~~~v~ 498 (1132)
+|+.|.+|+|||+++++.+. ++-+|...|..+.|+.. +++|++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999877 67889999999999743 799999999999999987653 356789999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
.+.|+. +++++++.|.+|++|++.+.+.+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 998842 79999999999999999999999999999999988876 4678888875 8889999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE---------EEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.++||.. -|.++.|. .+.+++|+.||+|++||+..+..- ..+.. +.+.|..+.|. ...+++++.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~--hsgRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE--HSGRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh--ccceeEEEeec--ceEEEeccC
Confidence 9999998 89999996 578999999999999999875422 22222 34478888885 567899999
Q ss_pred CCcEEEEEcCCc
Q 001176 650 DNGIKILANSDG 661 (1132)
Q Consensus 650 dg~i~iw~~~~~ 661 (1132)
|.+|.+||..++
T Consensus 468 ddtILiWdFl~~ 479 (499)
T KOG0281|consen 468 DDTILIWDFLNG 479 (499)
T ss_pred CCeEEEEEcCCC
Confidence 999999999887
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-28 Score=261.75 Aligned_cols=500 Identities=15% Similarity=0.180 Sum_probs=358.4
Q ss_pred cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecCC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
..+|.++||+.+.+ .||.+-.||.|.+|++..+=. ...+.++ ...|.+++|.+ +..|++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEeccc
Confidence 45799999999998 699999999999999987543 3456665 46799999983 36899999999999999999
Q ss_pred CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-cccCCceEEEEEeCCCCEEEEEEcC
Q 001176 528 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1132)
.+....+...++.|.+++.+|.+..++.++. +|.+..++...++...... ....+.+.++.|+|++..+++|+.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999999999874 6678888887776554332 2223489999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeC-----CC-CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCC
Q 001176 607 FQIKFWDMDNMNMLTTVDA-----DG-GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 680 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1132)
|.|++||..++..+..... .. ...-|+++.|-.++ .|++|...|+|.+||...+ .+.+....
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~---------- 243 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSC---------- 243 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhh----------
Confidence 9999999999988773321 11 22346677777555 6889999999999998877 33332221
Q ss_pred CCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceE
Q 001176 681 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 760 (1132)
Q Consensus 681 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~ 760 (1132)
T Consensus 244 -------------------------------------------------------------------------------- 243 (691)
T KOG2048|consen 244 -------------------------------------------------------------------------------- 243 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCe
Q 001176 761 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 840 (1132)
Q Consensus 761 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v 840 (1132)
|...|.+++.++++.++++++.|+.+..|...+.... |-. ..... .| ...|
T Consensus 244 -------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~------~~~r~--~h-~hdv 294 (691)
T KOG2048|consen 244 -------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVI------NSRRD--LH-AHDV 294 (691)
T ss_pred -------hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eee------ecccc--CC-cccc
Confidence 5667899999999999999999999888865432210 111 11111 25 7789
Q ss_pred eEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEE-EEEeCCCCCeEEEEeCCCcEEEEEcccce------
Q 001176 841 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 912 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~------ 912 (1132)
.+++..++ .+++|+ |.++.+-.....+..........+-.+ +...| .++|..--.+..+.+|.+.+.-
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~ 370 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYN 370 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccC
Confidence 99999887 777777 888777555432211111100011111 22233 3445445556678888776541
Q ss_pred ---eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-
Q 001176 913 ---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 988 (1132)
Q Consensus 913 ---~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 988 (1132)
+++........|.+.+.||+|++++.+.- ...++|.++....++...+....-.. ..++.+.|+-|+..++.
T Consensus 371 ~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 371 YIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLV 446 (691)
T ss_pred hhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEE
Confidence 11222223345899999999999997653 45788888764332222222222211 45788899999888777
Q ss_pred E-eCCeEEEEeC---CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccC
Q 001176 989 V-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1064 (1132)
Q Consensus 989 ~-~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1064 (1132)
+ +...+..++. +.+.+...... +--..|..+..||||++||+.+.+|.|.+|++++++......
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~----------- 514 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV----------- 514 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-----------
Confidence 4 5677888877 33344333332 235689999999999999999999999999999987654332
Q ss_pred CCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1065 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1065 ~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.-...+++++++|.....|+.+..|+.+.-+|+..
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 11267899999987888999999999999999943
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=272.90 Aligned_cols=283 Identities=17% Similarity=0.271 Sum_probs=240.1
Q ss_pred ccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 769 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
...|..+.|+|+|+.|++++..|.+.+|+... ......+.. | ...|+++.|+++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQa--H-Ds~Vr~m~ws~~ 149 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQA--H-DSPVRTMKWSHN 149 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhh--h-cccceeEEEccC
Confidence 45688999999999999999999999996421 111111222 7 999999999999
Q ss_pred CCEEEEee-CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 849 DSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
|.++++|+ +|.|++|+..- ..+..+.+ |...|++++|+| ....+++++.||+|+|||....+...++.+|.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999764 34444554 448899999999 6677889999999999999988888889999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCC-CCce
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECS 1004 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~-~~~~ 1004 (1132)
++|+|....+|++|.|..|++||.+++. ++..+.+|. ..|..+.|++++.+|++ +.|..++++|+. .+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999988 455566666 67999999999999999 789999999994 5555
Q ss_pred eecCCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1005 RSWSPKDALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1005 ~~~~~~~~h~~~i~~i~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
..+ .+|...+++++|+| ...+|.+|+.||.|..|.+...+.+..+. .+|...|.+++|+| =|.+|
T Consensus 300 ~~~---r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~----------~AHd~~iwsl~~hP-lGhil 365 (464)
T KOG0284|consen 300 FTY---RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP----------PAHDGEIWSLAYHP-LGHIL 365 (464)
T ss_pred HHh---hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC----------cccccceeeeeccc-cceeE
Confidence 444 67799999999999 46688999999999999999666554443 48899999999999 88999
Q ss_pred EEEeCCCcEEEEecCCCc
Q 001176 1084 ALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++|+.|.++++|.-....
T Consensus 366 ~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eecCCCcceeeeccCCCC
Confidence 999999999999887654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-30 Score=270.34 Aligned_cols=611 Identities=15% Similarity=0.180 Sum_probs=353.0
Q ss_pred ccCCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCc--e-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 400 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--L-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~--~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..+-. + .....+.+..-.|.++.|+|.... +++++ ..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 4788999999999999 677999999999999999984422 1 111223334457899999998775 45554 5889
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCC-eEEEEEEcCCCCEE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGN-WCTMMAYSADGTRL 553 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~-~v~~~~~s~~~~~l 553 (1132)
++|||+.+++.+..+.+|...|.+..|+. ||.+|++.+.|+.|+|||.+..... ....+|++ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999965 6699999999999999999876544 34455554 44567787776678
Q ss_pred EEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEE----------
Q 001176 554 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT---------- 621 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~---------- 621 (1132)
++.+.+...-..|++||.+. +..+.++.-.....+..--|.||.++++.+| .+.++..+.+...++..
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~ 309 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEE 309 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchh
Confidence 87776655667899999875 4455655544443566667899988777655 77888888775433110
Q ss_pred ----------------------EEe--------------------CC---------------------CCCCCcceEEEc
Q 001176 622 ----------------------TVD--------------------AD---------------------GGLPASPRLRFN 638 (1132)
Q Consensus 622 ----------------------~~~--------------------~~---------------------~~~~~v~~~~~s 638 (1132)
.+. .| +....|..+...
T Consensus 310 ~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~ 389 (1012)
T KOG1445|consen 310 QTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLA 389 (1012)
T ss_pred hhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccC
Confidence 000 00 000011112221
Q ss_pred CCC-----------C--EEEEEeCCCcEEEEEcC-------------Cc----c--------eeeeecc-----------
Q 001176 639 KEG-----------S--LLAVTTSDNGIKILANS-------------DG----V--------RLLRMLE----------- 669 (1132)
Q Consensus 639 ~~~-----------~--~l~~~~~dg~i~iw~~~-------------~~----~--------~~~~~~~----------- 669 (1132)
|.. . ..+.. -..+.+.-.. +. + ...+.+.
T Consensus 390 Pa~r~h~~~pp~~~P~p~~a~t--~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~ 467 (1012)
T KOG1445|consen 390 PAQRSHSPPPPEPVPTPKVAQT--PSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVH 467 (1012)
T ss_pred chhccCCCCCCCCCCCcccccC--CCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCcc
Confidence 100 0 00000 0000111000 00 0 0000000
Q ss_pred ----------ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCC---CcccCccCcCCcccccccccc
Q 001176 670 ----------GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP---AVSISSLGTIDGSRLVDVKPR 736 (1132)
Q Consensus 670 ----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 736 (1132)
+.+..+......++.-..|.-.++ ...++..-...|...+.... ......+.....+.....-.-
T Consensus 468 ~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~ 545 (1012)
T KOG1445|consen 468 TPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRP 545 (1012)
T ss_pred CCCcccccccCCCCCccccCCCcccccCCCCccc--ccccccccccCccccccCCCCCCcccCCCccccccccccccccc
Confidence 000000000000000000000000 00000000000110000000 000001111111111100000
Q ss_pred cccccCceeeeecCCCCCCCc------ce--EEecCCcccccceEEEEEecCCceEEe--ecccceeEEEeeccccCCCC
Q 001176 737 VAEDVDKIKSWRIPDISDPSQ------IK--ALRLPDSIAASKVVRLIYTNSGLSLLA--LASNAVHKLWKWQRTERNPS 806 (1132)
Q Consensus 737 ~~~~~~~v~~w~~~~~~~~~~------~~--~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~dg~i~vw~~~~~~~~~~ 806 (1132)
...--|.+.-|.-..+....+ .+ ..++|+ .+-.|+.+..++++ .+..|.|.||++......++
T Consensus 546 ~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg-------EsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPD 618 (1012)
T KOG1445|consen 546 KSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG-------ESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPD 618 (1012)
T ss_pred cceeeccchheeeccCccccchhhhhhhhcccccCCC-------ccCceeeccceEEEEecCCCceEEEEEcCCCCCCCc
Confidence 000002222222111111111 00 011111 12234445555544 56689999999876555444
Q ss_pred CccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee-CCCEEEEee-CCeEEEEECCCC-------eEEEEeeCC
Q 001176 807 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTF-------KVMTMFMSP 877 (1132)
Q Consensus 807 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~-dg~~la~~s-dg~i~vwd~~~~-------~~~~~~~~~ 877 (1132)
+-. .+... ...|+.+.|.| |...||++. ||.|++|.+..+ ..-..+..|
T Consensus 619 gv~---------------------p~l~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 619 GVM---------------------PGLFN-GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred ccc---------------------ccccc-CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 432 22222 56789999999 778888888 899999998754 344667889
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 957 (1132)
...|+++.|+|-..+.|++++.|-+|++||+.+++...++.+|.+.|.+++|||||+.+||.+.||+|++|+..+++.
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-- 754 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-- 754 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--
Confidence 999999999997788999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCC-
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG- 1036 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg- 1036 (1132)
.+..-.+.. ...-..|.|.-||+++++.+.|.
T Consensus 755 --pv~Eg~gpv---------------------------------------------gtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 755 --PVYEGKGPV---------------------------------------------GTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred --ccccCCCCc---------------------------------------------cCcceeEEEEecCcEEEEeccccc
Confidence 121111110 11222344555666665554443
Q ss_pred ---cEEEEeCCCcc--eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1037 ---AIGVFDAETLR--FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1037 ---~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
.|.+||..+.. .+...... .+ -.++--.|.++.+-++++|-.|..|.+|++...++.+-.
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~lD--------va--ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lp 852 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVLD--------VA--PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLP 852 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeeec--------cc--CccccccccCCCceEEEecCCCceEEEEEecCCCceeee
Confidence 36666665433 12111100 00 111122344545678889999999999999888865543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=300.65 Aligned_cols=290 Identities=26% Similarity=0.436 Sum_probs=246.9
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
+...|.++.|+++|+.+++++.++.+++|+...... .+.. .+.+ | ...|.+++|+|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l~~--h-~~~v~~~~fs~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-ELSG--H-TRGVSDVAFSP 213 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cccc--c-ccceeeeEECC
Confidence 467889999999999999999999999997632110 0111 1233 7 88999999999
Q ss_pred CCCEEEEee-CCeEEEEEC-CCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee
Q 001176 848 NDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
|++++++++ |++|++||+ ..+..++++.+|...|++++|+| .++++++|+.|++|+|||+.+++++..+.+|.+.|+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999 899999999 66799999999999999999999 779999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC-CCCc
Q 001176 926 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLEC 1003 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~~ 1003 (1132)
+++|++++++|++++.|+.|++||+.++... +.....++.... .++.++|+|++++++++ .|+.+++||+ .+.+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999999999999999999999999998743 344555555444 68999999999999995 6789999999 6777
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCC-CCCcEEEEeCCCCCCe
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQ 1082 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~ 1082 (1132)
...+.....-...+.+..++++++++++|+.|+.|++||+.++..+..+. +| ...+..+.++| ..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-----------~h~~~~~~~~~~~~-~~~~ 436 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-----------GHSKAAVSDLSSHP-TENL 436 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-----------CCCCCceeccccCC-CcCe
Confidence 77765543111255666678899999999999999999999988887775 66 67888999999 8889
Q ss_pred EEEEe--CCCcEEEEecC
Q 001176 1083 IALGM--SDGAVHVVEPS 1098 (1132)
Q Consensus 1083 l~s~~--~Dg~i~vW~~~ 1098 (1132)
+++++ .|+.+++|...
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 99988 89999999864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=247.04 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=237.1
Q ss_pred ccccceEEEEEecC-CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 767 IAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 767 ~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
+|.+++..++++|. |..|++++.|..|++|+... ..+-..... +.+ .| ...|+++||
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-------------------~~s~~ck~v-ld~-~h-krsVRsvAw 69 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-------------------GDSWTCKTV-LDD-GH-KRSVRSVAW 69 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-------------------CCcEEEEEe-ccc-cc-hheeeeeee
Confidence 37889999999998 88999999999999998642 011111111 211 37 899999999
Q ss_pred eeCCCEEEEee-CCeEEEEECCC--CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---eeeeeecc
Q 001176 846 SKNDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKG 919 (1132)
Q Consensus 846 s~dg~~la~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 919 (1132)
+|.|++||+|+ |.++.||.-.. .+++.++.||..+|.|++|++ +|++||+++.|++|.||.+..+ ++...++.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 99999998664 578999999999999999999 9999999999999999999844 57888999
Q ss_pred ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEe
Q 001176 920 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYD 998 (1132)
Q Consensus 920 h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd 998 (1132)
|...|..+.|+|...+|+|+|-|.+|++|+-.... .-.+.+.+.+|. ..|.+++|++.|..|++ +.|+++++|.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCcc---ceEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999999999999999999999999877322 244677777876 57899999999999888 5789999998
Q ss_pred CCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCC
Q 001176 999 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1078 (1132)
Q Consensus 999 ~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 1078 (1132)
.-.. + ...|+.++..++|. ...||+++.|+.|++|.-..+-.-..+. +.......|...|-+++|.|.
T Consensus 224 ~~~~----~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~----l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 224 LYTD----L--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN----LLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred eccC----c--chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH----HHHhhhcccccccceEEEcCC
Confidence 6311 1 13357899999998 4579999999999999877431111111 112234588889999999996
Q ss_pred CCCeEEEEeCCCcEEEEecC
Q 001176 1079 EPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1079 ~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
..++|++|+.||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 68899999999999999875
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=283.91 Aligned_cols=285 Identities=25% Similarity=0.408 Sum_probs=252.5
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
++. |.+.|++++|+|+++ ++++|+.||.|++|++.+++.... +..|...+.++.|+|++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADG 63 (289)
T ss_pred HhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCC
Confidence 444 889999999999998 688899999999999988764332 45688899999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 497 (1132)
+++++++.||.|++|++.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...+
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence 999999999999999999876554 5668888999999999977 78888889999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
.+++|++. +.++++++.|+.|++||++..+....+..+...+.+++|+|+++.+++++. ++.+++||+.+++.+
T Consensus 139 ~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~ 212 (289)
T cd00200 139 NSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCL 212 (289)
T ss_pred EEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCcee
Confidence 99999886 378888888999999999988888888888889999999999999998874 778999999999988
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..+..+.. .+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|++++.+|++++.||.+++|+
T Consensus 213 ~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 213 GTLRGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cchhhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88877766 89999999998888888889999999999988888887554 3799999999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=275.14 Aligned_cols=297 Identities=16% Similarity=0.239 Sum_probs=250.0
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
.+.++++.+|...|+++.|.|. .+.+|++++.|+.|++|++.. ++++..+.+|..+|..++|+++|..+++++.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---- 278 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---- 278 (503)
T ss_pred HhheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec----
Confidence 3456788999999999999884 348999999999999999987 6778899999999999999999999999997
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
|+.|++||+++|+++..|.... .+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..| ...|..+.|-++|
T Consensus 279 D~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h--Lg~i~~i~F~~~g 354 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH--LGAILDITFVDEG 354 (503)
T ss_pred ceeeeeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh--hhheeeeEEccCC
Confidence 7889999999999999987654 78999999999 88899999999999999999999888876 4489999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCc
Q 001176 642 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 721 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1132)
+.+++.++|++++||+...+ ..++....+
T Consensus 355 ~rFissSDdks~riWe~~~~-v~ik~i~~~-------------------------------------------------- 383 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIP-VPIKNIADP-------------------------------------------------- 383 (503)
T ss_pred ceEeeeccCccEEEEEcCCC-ccchhhcch--------------------------------------------------
Confidence 99999999999999998766 222111100
Q ss_pred cCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccc
Q 001176 722 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 801 (1132)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~ 801 (1132)
+.-...++..+|++..+++-+.|+.+.+|.+...
T Consensus 384 ----------------------------------------------~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 384 ----------------------------------------------EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred ----------------------------------------------hhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 1223567889999999999999999999875311
Q ss_pred cCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCC
Q 001176 802 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA 880 (1132)
Q Consensus 802 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 880 (1132)
+ ..-....+.++.- .+.-..+.|||||.+|++|+ ||.+.+||..+-+++..+++|...
T Consensus 418 -~-------------------r~nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ 476 (503)
T KOG0282|consen 418 -F-------------------RLNKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP 476 (503)
T ss_pred -c-------------------ccCHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc
Confidence 0 0011112333222 45567889999999999998 999999999999999999999999
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
++.+.|+|.....+|+++.||.|++||
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 999999998889999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=256.19 Aligned_cols=292 Identities=19% Similarity=0.285 Sum_probs=247.1
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
....+.|..|+|||++|++++.||.|.+|+..+++...+-+..+.. ...+ + ..+|.|++||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~fMM--------m-d~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------NFMM--------M-DDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------ceee--------c-ccceEEEeecc
Confidence 4566789999999999999999999999998776654443332221 1111 3 77899999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEee-CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
|...+|+|+ ||+|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||.+-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999997 7999999999999 888888999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC-cEEEEE-eCCeEEEEeCCCCc
Q 001176 926 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
...|++||..+++++.||+|++|+.++.++....... +.. .+|..+..-|-+ ..++++ ..++|.+-++.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d---~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GTD---YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CCc---ccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 9999999999999999999999999998865432111 111 466777666644 345554 67889999999999
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
++.+..+.-..+..-+++.||.|.++++.++|+.++-|.+.+|.+-..+. .|...|+.++-+| ..+.|
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-----------VhEkdvIGl~HHP-HqNll 494 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-----------VHEKDVIGLTHHP-HQNLL 494 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-----------cccccccccccCc-ccchh
Confidence 99988776556777888999999999999999999999999998876654 6678888999999 77899
Q ss_pred EEEeCCCcEEEEe
Q 001176 1084 ALGMSDGAVHVVE 1096 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~ 1096 (1132)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=306.26 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=237.3
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
|...|++++|+|+|+ ++|+|+.|+.|+||+......... . .......+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 799999999999999864211000 0 00000012 2346899999988 57899
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 5789999999999997 667 8999999999999999999998888755 67899
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-----
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 573 (1132)
+.|.+. ++.++++|+.||.|++||++... ....+.+|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 998643 46899999999999999998765 455777899999999997 7788988875 78899999974
Q ss_pred -CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----------CCCCCCCcceEEEcCCC
Q 001176 574 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----------ADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 574 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~ 641 (1132)
...+..+.+|.. .+.+++|++++.+|++|+.|+.|++|+......+..+. ...+...|.+++|++++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888876 78899999999999999999999999987665443321 11223468999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001176 642 SLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~ 658 (1132)
..|++|+.||.|++|++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999985
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=258.79 Aligned_cols=232 Identities=16% Similarity=0.310 Sum_probs=205.9
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
....|.|+.+ |...+++|..|.+|+|||.++-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3457999999 77889999999999999999877665 688999999999984 45 899999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+. +++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEec---
Confidence 999999999999999999853 69999999999999999887643 36778888999998854 5999886
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
+|.+|++|+..+++.++++.+|.. .|.|+.+. ++++++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 488999999999999999999988 67777664 78899999999999999999999999998865 78999996
Q ss_pred CCEEEEEeCCCcEEEEEcCCc
Q 001176 641 GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+.+++|+-||+|++||+..+
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 668999999999999999876
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=243.98 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=251.5
Q ss_pred CCCCeeEEEEcc---CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 342 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 342 h~~~V~~~~~sp---dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
|+.+|..++||| +| ++|++++.|+.-.+-+-++|..+.+ +.||++.|++..++.+..
T Consensus 13 htrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~na~ 72 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKNAT 72 (334)
T ss_pred CCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCchhh
Confidence 889999999996 67 5899999999999999999988875 789999999999999999
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-EEEEecCCCCCe
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPV 497 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v 497 (1132)
+.|+++.|-+-+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|+||+.++.++|+|++..+ +...+.+|.+.|
T Consensus 73 ~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 99999999999999999998776 33 5888999999999999 79999999999999998754 467889999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
..+.|.... +.+++.+.|++||+||.+++.....+.. ...|+++-++++|++|.++- .+.|.+||..+..++
T Consensus 147 r~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 147 RTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGLL 218 (334)
T ss_pred eeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccccccce
Confidence 999997654 7888989999999999999988887764 45789999999999998774 455999999999999
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE-eCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
+.++... .|.+.+.+|+...+++|++|..++.||..+++.+..+ ++| .++|.|+.|+|||...++|+.||+|++|
T Consensus 219 Ks~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 219 KSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred eeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCceEEEE
Confidence 9888765 5888999999999999999999999999999999886 444 5599999999999999999999999999
Q ss_pred EcCCc
Q 001176 657 ANSDG 661 (1132)
Q Consensus 657 ~~~~~ 661 (1132)
....+
T Consensus 295 Qt~~~ 299 (334)
T KOG0278|consen 295 QTTPG 299 (334)
T ss_pred EecCC
Confidence 98766
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=268.88 Aligned_cols=247 Identities=23% Similarity=0.407 Sum_probs=220.6
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.++|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+|+++ .+++++.||.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 5678999999999999997 799999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++.+..+..|...+.++.|++. +.++++++.|+.|++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998888899999999999999876 478888888999999999988888888888889999999999988888753
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.+++|+++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 67899999999998888887766 799999999999999999999999999999888888765543 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCc
Q 001176 641 GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+.++++++.+|.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=234.21 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=219.0
Q ss_pred cccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 399 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 399 ~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
..+.+|+++|..+.|+-||+|.++++.|.+|++|+...+.+++ +..+|...|.+++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3478899999999999999999999999999999999998777 7889999999999999998 7999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
||+.+|+.++.|++|.+.|+.+.|+... ..+++|+.|.++++||-++.. ++..+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999997654 899999999999999987654 455666666778888765 4567777
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ||+++.||++.|+....+-++ +|++++|+++++..++++-|+++++.|-.+|+.+..+.+|....--...+
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 64 888999999999987777665 79999999999999999999999999999999999999887654445677
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++.....+++|+.||.|.+||+.++
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 7888889999999999999999887
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=249.74 Aligned_cols=294 Identities=18% Similarity=0.325 Sum_probs=244.3
Q ss_pred ccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 328 SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 328 ~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.....+.++...+.|.+.|.++... ++ .+.+|++||.++|||........ +.||.++
T Consensus 90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~~ 146 (423)
T KOG0313|consen 90 VEAITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTGP 146 (423)
T ss_pred EEecCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCceEEE--------------------EecCCcc
Confidence 3344667777888899999999999 44 58999999999999987543322 6789999
Q ss_pred eEEEEEcCCC---CeEEEEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 408 VNRCVWGPDG---LMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 408 V~~v~~spdg---~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
|.+++|--.. ..+++++.|.++++|.++.++.. .......||...|.+++..++|. ++++|+.|.+|.||+..+
T Consensus 147 ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 147 IKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVET 224 (423)
T ss_pred eeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCC
Confidence 9988885433 36999999999999999887643 22223459999999999999999 899999999999999321
Q ss_pred -------------------------CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001176 484 -------------------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 538 (1132)
Q Consensus 484 -------------------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 538 (1132)
+.++-++.||..+|.++.|.+. ..+++++.|.+|+.||+.+++....+.. .
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ 300 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-N 300 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-C
Confidence 2245678899999999999863 6899999999999999999988877664 4
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc---eeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEEC
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 614 (1132)
..+.++.++|..++|++++. +..+++||.+++. ...+|.+|.. .|.++.|+|... +|++|+.|+++++||+
T Consensus 301 ksl~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 301 KSLNCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred cceeEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 57899999999999999886 7789999998754 4567889988 999999999774 5677999999999999
Q ss_pred CCCe-eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 615 DNMN-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 615 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++.+ ++..+..|.. .|.++.|+. +..+++|+.|.+|+++.-
T Consensus 376 RS~k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ccCCCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 9877 8888887754 899999974 568999999999999864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=258.80 Aligned_cols=295 Identities=17% Similarity=0.228 Sum_probs=254.8
Q ss_pred cCCcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 329 QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 329 ~d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.+..|..+...++ |.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..+.|..++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCC
Confidence 3567777788888 999999999999976 599999999999999987763211 126678889
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
|+.+.|.++++.+++++.|+.+++|+++..+... +|.||++.|+++.|..... .+++|+.|.+|++||+....+.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999977655 7889999999999988776 5999999999999999999888
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
+++- ....+..|+.. ...+++|-.|+.||+||.++.........++ .|+++..+++|..+++++. |.++.
T Consensus 297 kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~ 366 (459)
T KOG0288|consen 297 KTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLK 366 (459)
T ss_pred cccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCcee
Confidence 7764 23445666654 2679999999999999999999988888766 9999999999999999975 77899
Q ss_pred EEeCCCCceeeeecccc---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 568 EWNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
+.|+++.+....+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..|
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 99999988887776432 225778999999999999999999999999999999999877665579999999999999
Q ss_pred EEEeCCCcEEEE
Q 001176 645 AVTTSDNGIKIL 656 (1132)
Q Consensus 645 ~~~~~dg~i~iw 656 (1132)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-28 Score=298.22 Aligned_cols=271 Identities=14% Similarity=0.195 Sum_probs=217.6
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCC----Cce
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GEL 440 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~----~~~ 440 (1132)
+|.+++|+..+.+.... .....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 57788888775443211 001114459999999999999999999999999999997642 111
Q ss_pred e-eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCe
Q 001176 441 R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 519 (1132)
Q Consensus 441 ~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~ 519 (1132)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|+|. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 3568999999986433 7999999999999999999999999999999999999864 3479999999999
Q ss_pred EEEEEcCCCCceEEecCCCCeEEEEEEc-CCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCC
Q 001176 520 IKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
|++||++++.....+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777766644 578899995 57899999875 7889999998765 4667778776 89999997 67
Q ss_pred CEEEEEEcCCeEEEEECCCC------eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 598 NRFLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++++++.|+.|++||+..+ ..+..+..|.. .+.+++|++++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 56667776643 7889999999999999999999999997654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=281.16 Aligned_cols=306 Identities=17% Similarity=0.260 Sum_probs=252.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
+...|.+++.+|||. .+|||+ .|+.++||+.+.--.. ...++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456799999999998 599999 9999999997642110 0111111 23333346679999999999999999
Q ss_pred EEEEeCCCeEEEEEecC----------C-----CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 420 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
||+|++|+.|.||.... | +..+....+.+|...|.+++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 12345567899999999999999999 9999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEec
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
+.+.++++|...|-.+.|.|.+ +++++-+.|++|++|+..+-+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998866 99999999999999997765555554433 336889999999999998876
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC--------C-----C----EEEEEEcCCeEEEEECCCCeeEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------R-----N----RFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~----~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. | + .+++|+.|+.|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666778899999888888889999998 9999999982 1 1 46678999999999998888776
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+..-.. ..|..++|+|||..|+.++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6643332 37999999999999999999999999998764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=239.41 Aligned_cols=298 Identities=17% Similarity=0.228 Sum_probs=252.6
Q ss_pred cccccceEEEEEe---cCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 766 SIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 766 ~~~~~~i~~~~~s---~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
++|..+|..++|+ |+|-+|++++.||.-.+ -+-++|.-+.. +.+ | .+.|+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-feg--h-kgavw~ 64 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FEG--H-KGAVWS 64 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-eec--c-Ccceee
Confidence 5689999999997 58999999999875433 23445544433 444 7 999999
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-eeeeeccc
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGH 920 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h 920 (1132)
.++..+....|+++ |-+-++||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.-+ +...+.+|
T Consensus 65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred eecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 99999999999998 8999999999999999988 888899999999 89999999999999999998653 55678999
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS- 999 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~- 999 (1132)
.+.|..+.|-...+.+++++.|++||+||..++......... .+|+++..++||++|.++..+.|.+||.
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEeccc
Confidence 999999999988899999999999999999998854432221 4689999999999999999999999999
Q ss_pred CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCC
Q 001176 1000 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE 1079 (1132)
Q Consensus 1000 ~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 1079 (1132)
..+.++.+.. ...|.+..++|+...+++|++|+.++.||+.+|+.+..+. .+|...|.|+.|+| |
T Consensus 214 sf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n----------kgh~gpVhcVrFSP-d 278 (334)
T KOG0278|consen 214 SFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN----------KGHFGPVHCVRFSP-D 278 (334)
T ss_pred cccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc----------cCCCCceEEEEECC-C
Confidence 7777777654 5679999999999999999999999999999999987642 38889999999999 9
Q ss_pred CCeEEEEeCCCcEEEEecCCCc--ccccCCCCCCCCCC
Q 001176 1080 PNQIALGMSDGAVHVVEPSDAE--LKWGGTPSQDNGPL 1115 (1132)
Q Consensus 1080 ~~~l~s~~~Dg~i~vW~~~~~~--~~~~~~~~~~~~~~ 1115 (1132)
|...++|+.||+|++|.+.-++ ..|.--.|.+.|.-
T Consensus 279 GE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee 316 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE 316 (334)
T ss_pred CceeeccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence 9999999999999999998877 34555556555443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=252.24 Aligned_cols=283 Identities=18% Similarity=0.263 Sum_probs=241.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
..+.|++++|||...+=+|+.+ .-.|.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 5579999999996654344433 35899999888766543 334667899999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. ++++|++|+.+++||+.+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999976644444 57899999999999998876 899999999999999999988779999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeee
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTY 580 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 580 (1132)
|+|..+ .+++|||.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 998754 7999999999999999999865555556889999999999999999996 4569999999655 44455
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..|.. .|+|+++..++..|+++|-|+.|++||+.+.+.+..+... ++|.+++.+|+++.++.|-.+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehh
Confidence 55766 8999999999999999999999999999999999888765 37999999999999999999999877643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=216.95 Aligned_cols=312 Identities=16% Similarity=0.244 Sum_probs=243.1
Q ss_pred ccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 333 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 333 ~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..+++.+|.....|.+++|+|.|. +.|+|+...+.+|.....-..+.... +...-.........+.|.+.|.|.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEE
Confidence 345677888889999999999998 79999999999998765422221000 0000000011112456999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecC--CCceeeeeeeecccCCEEEEEEecCC--CcEEEEEEc-CCCcEEEEECCCCeEE
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPN--KQLCIVTCG-DDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~--~~~~l~s~~-~dg~v~vwd~~~~~~~ 487 (1132)
|||+|.+||+|+.|.+|++.-.+. ........++.-|.+.|..++|..+. ...+|++++ .|..|++-|..+|+..
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 999999999999999999876553 33344445677899999999997542 112666655 5788999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEecCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+.+|.+.|.++- .-++.++++|+.|.+|++||++-..++..+.. +...|.+++..|.|++|+++-.
T Consensus 177 ~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 99999999999884 22458999999999999999998777665432 2357999999999999999864
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--e--eEEEEeCCCCCCCcceEE
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--N--MLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~--~~~~~~~~~~~~~v~~~~ 636 (1132)
|....+||++.++.++.|..|.. .|.|+.|+|...++++++.|..|++-|+... . ++.....| ...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEE
Confidence 77799999999999999999988 8999999999999999999999999998642 1 22233333 44788899
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
|+|..--+++.+.|.++.+|-+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99988889999999999999753
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=230.52 Aligned_cols=284 Identities=12% Similarity=0.160 Sum_probs=238.4
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|..+++.+.|+.+|. ||++++.|.++.||-..+|+.+.+ +.||.+.|+|++.+-+.+++
T Consensus 8 GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCccee
Confidence 3999999999999999 899999999999999999998875 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEE-----cCCCcEEEEECC-------CCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-----GDDKMIKVWDVV-------AGRKQY 488 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-----~~dg~v~vwd~~-------~~~~~~ 488 (1132)
++|+.|.++++||+++|+++... .-..+|..+.|+++|. +++.+ +..+.|.++|++ ..++..
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 99999999999999999987643 2456899999999998 44443 334689999998 455677
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
.+..+...++.+-|.|.+ .+|++|..||.|..||++++.... ....|...|+.+++++|..++++++. |.+-.
T Consensus 142 kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dttak 215 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTAK 215 (327)
T ss_pred EecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccce
Confidence 888889999999998876 899999999999999999976655 55778889999999999999999975 77799
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe--EE------------EEECCCCeeEEEEeCCCCCCCcc
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IK------------FWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
+||..+-+.++++.... ++++.+++|...+++.||.... |. +|++-..+.+..+++| .++|+
T Consensus 216 l~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPIN 291 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPIN 291 (327)
T ss_pred eeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcc
Confidence 99999999999998755 8999999998888888653222 22 2222222344555555 55999
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
+++|+|+|+..++|+.||.||+.....
T Consensus 292 svAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 292 SVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeEECCCCcccccCCCCceEEEEEecc
Confidence 999999999999999999999986654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=264.32 Aligned_cols=306 Identities=14% Similarity=0.099 Sum_probs=232.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
+-..|.....++|+.. +++++.+..+..|+...+..+. +....+..+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3456777788888764 6667778888889876653221 11111111222234789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 421 GVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999987532 1233468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCe-EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
|.+++|+|+ +.+|++++.|++|++||++++.....+..|.+. +..+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEECC--CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999885 489999999999999999998888788777653 45778999998988887655568899999998754
Q ss_pred -eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 576 -IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 576 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
++.....+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|.-..=+. .--..
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~~dv~--~~Ei~ 325 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWSLDTR--KCEIA 325 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccccccccc--ceeee
Confidence 44444434433566678999999999887 5999999999999887765443 2346788999885432111 11244
Q ss_pred EEEEcCC
Q 001176 654 KILANSD 660 (1132)
Q Consensus 654 ~iw~~~~ 660 (1132)
|+|.+..
T Consensus 326 r~~~l~~ 332 (493)
T PTZ00421 326 RFYALTY 332 (493)
T ss_pred EEEEecC
Confidence 6666543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-28 Score=226.94 Aligned_cols=286 Identities=16% Similarity=0.245 Sum_probs=231.3
Q ss_pred CeeEEEEcc--CCCeEEEEEc-----CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC-
Q 001176 345 NVMSMDFHP--QQQTILLVGT-----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD- 416 (1132)
Q Consensus 345 ~V~~~~~sp--dg~~lla~g~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 416 (1132)
.=.++.||| .++..+|++. ..|.+.|-++..++.+.. +..+ .-.+.+..++||++
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~ 72 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENH 72 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCC
Confidence 346788999 4553334432 358899999975444331 2222 24668999999995
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
.+.+++++.||++++||.... ..++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.+.+|.||...
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC 149 (311)
T ss_pred cceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccE
Confidence 567888999999999995443 2344578899999999999998776 6788899999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCeEEEEeCCCC-
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEG- 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~- 574 (1132)
|...+|+|... ++++++|.|+++++||++..+....+..|...+.++.|+.-.. .+++++ .|+.|+.||++.-
T Consensus 150 Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 150 IYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLR 224 (311)
T ss_pred EEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcc
Confidence 99999999754 8999999999999999999998888999999999999998655 455554 4888999999874
Q ss_pred ceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCC
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDN 651 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 651 (1132)
.++..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. -+..+.|++ ++.++|+++-|+
T Consensus 225 ~pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 225 TPLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ccceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeeccccc
Confidence 46778888877 89999999976 67788999999999999854 34455555543 688899998 788999999999
Q ss_pred cEEEEEc
Q 001176 652 GIKILAN 658 (1132)
Q Consensus 652 ~i~iw~~ 658 (1132)
.+.||+.
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999984
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=220.47 Aligned_cols=235 Identities=14% Similarity=0.207 Sum_probs=204.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+. ++.||++.|+|+..+-+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 478999999999999999999999999999999998888776 7899999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-----cCCeEEEEEcC-------CCCceEEecCCCCeEEEEEEc
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-----IDGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 547 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-----~dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 547 (1132)
|+++|+++.+++ -..+|..+.|++.+ ++++... ..+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999987 56789999998765 5555543 34679999988 445567788888999999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCce-eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
|-+++|++|.. ++.|..||+++|+. +..-+.|.. .|+.++++++..++++++.|.+-++||+.+.+.+.++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999964 88899999999854 455566665 8999999999999999999999999999999999988754
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCC
Q 001176 627 GGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 379999999977777777653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=227.58 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=221.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC-ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
..+.|.+++|||....++++||-||+||+|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 56799999999966668889999999999999874 3221 1245699999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+....-.|+|||.|++|+.||.+...++.++. ....+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998544 36789999999999887655589999999999999999999988875 45667777
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ce
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 576 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 576 (1132)
..-. .+++.+..++.|.+|+++.+..... ... -.-.++|++..+|.+..+.|+. +|++.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 5422 6899999999999999976554332 221 2337889999898887788875 667777777765 45
Q ss_pred eeeeccccCC--------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 577 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 577 ~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
-.+|+.|... .|++++|+|....|+++|.||++.+||-.....+...+.+. .+|++.+|+.+|.+++.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 5567777631 37789999999999999999999999998877777766554 4899999999999888664
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=265.52 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=219.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC---CCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 418 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~ 418 (1132)
|.+.||++.||+||+ |||+|+.|+.|+||.+...+.... ..-+.......+. -.+.+.-+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~~~------~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFEYN------ANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cccccchhhhhhh------hccccCcccccccccccc
Confidence 999999999999999 799999999999999977443211 0000000000000 000011111111 011
Q ss_pred --eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 419 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 419 --~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....+++.|. |.+.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11122222222222211111123445788999999999999876 69999999999999999999999996 9999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
|+||+|+|..| +++++|+.||.||||++...+...- ..-..-|++++|.|||++.++|+. +|..++|+....+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999866 8999999999999999976544433 333478999999999999999987 77899999988776
Q ss_pred eeeecccc-------CCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 577 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 577 ~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
...+.-+. ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 65543221 1269999998754 458888899999999999999999998776655667889999999999999
Q ss_pred CCCcEEEEEcCCc
Q 001176 649 SDNGIKILANSDG 661 (1132)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (1132)
+|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999997543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=218.98 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=237.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
|...|.+++|+-+|. -|++|+.|+++.+|++...+.... ....+|.+.|-.++|+| ...++
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcce
Confidence 778999999999999 499999999999999987744332 12568999999999998 57799
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++++.|.+|++||+..+++.... . ..+.=..+.|+|+|. +++.++.|..|.+.|.++.+.+...+ ....+.-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877643 2 233344689999999 89999999999999999888776554 45567888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
+|+.++ ++++.....|+|.|-.....+++..+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 887443 67877888899999999999999999999999999999999999999986 778999999998899999
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.-+.- +|+.+.|+.+|++|++|++|..|-|=++.+|..+..++..+ +...++|+|...+||.+++|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 89999999999999999999999999999999999997653 57899999999999988775
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=230.65 Aligned_cols=308 Identities=17% Similarity=0.230 Sum_probs=241.1
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccc-ccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
...+. |++.+.+.+|||||. ++|+|+.|..|+|.|++..-... ...+..-+.. ...|... .+-.|.++|+++.|+
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~q-a~hPvIR-TlYDH~devn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQ-ARHPVIR-TLYDHVDEVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcc-cCCceEe-ehhhccCcccceeec
Confidence 34444 999999999999998 89999999999999987321100 0000000000 1112222 256799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe---c
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 491 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~ 491 (1132)
|....|++|+.|++|+++|.......+..+.+ ....+|.++.|+|.|. +|+.|..-.++++||+++-++-..- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999875544333333 2456899999999999 8999999999999999998875433 3
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCC-CeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
.|.+.|+++.+++.+ .+.++++.||.|++||--+.+++..+. .|+ ..|.+..|+.+|+++++.|. |..+++|
T Consensus 259 qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLW 332 (430)
T ss_pred ccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeee
Confidence 589999999997754 899999999999999988888877553 344 48999999999999999874 8889999
Q ss_pred eCCCCceeeeeccccCC----ceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 570 NESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
.+.+++++..+.|.... --+...|+....+++.-. ..+.++-||.+++..+..+.. ++.+.+..+.-+|.+.-+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCce
Confidence 99999999999875211 123356888888888765 567899999999877766543 345689999999999999
Q ss_pred EEEeCCCcEEEEE
Q 001176 645 AVTTSDNGIKILA 657 (1132)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (1132)
++++.|..+|+|-
T Consensus 412 mTcsdD~raRFWy 424 (430)
T KOG0640|consen 412 MTCSDDFRARFWY 424 (430)
T ss_pred eeecccceeeeee
Confidence 9999999999995
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-26 Score=221.97 Aligned_cols=282 Identities=14% Similarity=0.231 Sum_probs=232.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....|.++.|+++|. ++++++.|.+++|||..+++.+.. +..++-.|..+.|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 467999999999999 577788999999999999988764 445677888899988777777
Q ss_pred EEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 422 VAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 422 s~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
.++. |.+|+..++.+.+.++ .+.||...|..++.+|-+. .+++++.|++|++||++..++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7766 8899999999998887 6899999999999999998 89999999999999999888877765444444
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecC---CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
++|.| .|-++|++...+.|++||++... +-..+.. .....+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45655 44788888888899999998753 2233333 3558899999999999998864 778999999999
Q ss_pred ceeeeeccccCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 575 AIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 575 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
..+.++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999999875 344789999999877776654 47
Q ss_pred EEEEEcC
Q 001176 653 IKILANS 659 (1132)
Q Consensus 653 i~iw~~~ 659 (1132)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7778544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=264.68 Aligned_cols=283 Identities=17% Similarity=0.288 Sum_probs=247.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...+.|..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56789999999 44 488999999999999999887653 1678999999999988788999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.|.++++||+.+|++.. .+.+|.+.|.++...+. ++++|+.|.+|++|++.++..+..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999999776 78899999999987543 689999999999999999999999999999999998
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC-ceeeee
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 580 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 580 (1132)
.+ +.++++|+.|++|++||+.+.+++..+.+|.++|+++.+.+. ..+++++. |+.|++||+++. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 85 379999999999999999999999999999999999988776 88999986 678999999999 999999
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+|.. .+..+.+ .++++++++.|+.|++||..+++++..+..+ +...|..+++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99887 5544443 4689999999999999999999999999874 23467777765 46788999999999999999
Q ss_pred cceeeeec
Q 001176 661 GVRLLRML 668 (1132)
Q Consensus 661 ~~~~~~~~ 668 (1132)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 8 444433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=253.48 Aligned_cols=278 Identities=17% Similarity=0.238 Sum_probs=239.9
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 426 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 426 (1132)
.-++||..+ .||+|. ...|++|+..+++.... ..-++..|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346788554 577764 46999999999875432 12247899999999999999999999
Q ss_pred CeEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE-ecCCCCCeEEEEeec
Q 001176 427 HIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHH 504 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h~~~v~~i~~~~ 504 (1132)
|.|.|||....+.+. .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999877665 5667 99999999998 44 789999999999999998876655 889999999999987
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
++ .++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|+.|++||..+|+.+......
T Consensus 312 d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 DG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred CC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 55 89999999999999999988999999999999999999995 456777765 56899999999999999888765
Q ss_pred cCCceEEEEEeCCCCEEEE--EEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 584 RKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
. .|..+.|++..+.+++ |..++.|.||++.+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 5 6999999999977777 44778999999999999999988865 7999999999999999999999999998664
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=218.15 Aligned_cols=276 Identities=14% Similarity=0.225 Sum_probs=234.1
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE--EecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~ 522 (1132)
++++|...|.+++|+-+|. .+++|+.|+++.+|++...+... ..++|.+.|-.++|+|..+ +.+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 79999999999999998876554 3468999999999998765 79999999999999
Q ss_pred EEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE
Q 001176 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 602 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 602 (1132)
||.+.+++........+.+ .++|+|+|.+++++.. +..|...|.++.+.+...+... .+.-++|+-++++++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k----dD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNK----DDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecC----cccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988877666555 5789999999999864 6679999999888877666543 4677889888888888
Q ss_pred EEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCC
Q 001176 603 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 682 (1132)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1132)
....|.|.|......+++..++.|.. ...|+.|+|+|+++|+|+.|..+.+||+..- .+.+.+.
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is------------- 228 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS------------- 228 (313)
T ss_pred ecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHh-hhheeec-------------
Confidence 88889999999999999999998854 6789999999999999999999999997643 1111100
Q ss_pred CCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEe
Q 001176 683 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 762 (1132)
Q Consensus 683 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 762 (1132)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 763 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 763 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
++ ..+|..
T Consensus 229 -----------------------------------------------------------------------Rl-dwpVRT 236 (313)
T KOG1407|consen 229 -----------------------------------------------------------------------RL-DWPVRT 236 (313)
T ss_pred -----------------------------------------------------------------------cc-cCceEE
Confidence 03 678999
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 900 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d 900 (1132)
+.||.||++||+|+ |..|-|=++++|..+..+. +.++-..++|+| ...+||.+..|
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 99999999999999 8889999999999888887 788899999999 88999988766
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=241.17 Aligned_cols=297 Identities=19% Similarity=0.259 Sum_probs=226.5
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
|...|..+++.|.|.++++|+-|.+|++||+.....+. .. .+...+. . ...|.++.|++
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~-----------------~~-fr~l~P~--E-~h~i~sl~ys~ 224 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM-----------------RS-FRQLQPC--E-THQINSLQYSV 224 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccc-----------------hh-hhccCcc--c-ccccceeeecC
Confidence 77889999999999999999999999999986422110 00 1111112 1 45799999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEE------------eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-e
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTM------------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-V 913 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~ 913 (1132)
.|..|++.+ ....+|+|-+..+.... -+||...++|.+|+|.....+++++.||++||||+..-+ .
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 999888887 78899999776544333 357999999999999878889999999999999998653 2
Q ss_pred eeeec-----cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 914 KTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 914 ~~~l~-----~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
+.++. +-.-.++.++|++||+++|+|+.||.|.+|+..+........+. ..|. +...+++++||+||++|++
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~-~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHL-PGQDITSISFSYDGNYLLS 381 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--eccC-CCCceeEEEeccccchhhh
Confidence 33332 22336899999999999999999999999998654433322332 2333 2257999999999999999
Q ss_pred -EeCCeEEEEeC-C-CCceeecCCCCCCCCCeEEEEEccCCCEEEEEe------cCCcEEEEeCCCcceecccCCCcccc
Q 001176 989 -VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGF------CDGAIGVFDAETLRFRCRIGPSAYIP 1059 (1132)
Q Consensus 989 -~~d~~v~vwd~-~-~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~------~dg~i~vwd~~~~~~~~~~~~~~~~~ 1059 (1132)
+.|++++|||+ + .+++..+... ....+-+.++||||.++|++|+ ..|.+++||..+...+..+...
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 99999999999 3 3344433322 1256778999999999999985 3578999999999999888622
Q ss_pred ccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEE-ecCCCc
Q 001176 1060 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDAE 1101 (1132)
Q Consensus 1060 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW-~~~~~~ 1101 (1132)
.+.|..+.|+| .=+.|++|+.||.++++ |-+..+
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 57899999999 66788889999998875 554444
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=220.55 Aligned_cols=253 Identities=16% Similarity=0.218 Sum_probs=212.6
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeC--CCcEEEEEccccee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEV 913 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~ 913 (1132)
...|.++.|+++|.++++++ |.+++|||..+++.++++..+.-.+..+.|.. ....+..++. |.+|+.-++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCce
Confidence 56899999999999999988 88999999999999999998888899999987 5556666665 88999999999999
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCC-
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES- 992 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~- 992 (1132)
++.+.||...|++|+.+|-+..++|++.|++|++||++..++... +.. ..-..+||.|+|-++|++.++
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~--------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNL--------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--Eec--------CCCcceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999997664332 111 123478999999999997544
Q ss_pred eEEEEeC---CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCC
Q 001176 993 QISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069 (1132)
Q Consensus 993 ~v~vwd~---~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1132)
.|++||+ ..+....+....+-..+++.|.|||||++++.++..+.+++.|.-+|..+..+.... .....
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~--------~~~~~ 234 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP--------NAGNL 234 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc--------CCCCc
Confidence 9999999 455555555554557899999999999999999999999999999999888876442 22234
Q ss_pred cEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1070 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1070 v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
.....|+| |++++++|+.||+|.+|++++++.......|
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 47899999 9999999999999999999999955444333
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=226.00 Aligned_cols=254 Identities=15% Similarity=0.270 Sum_probs=206.2
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC------------CC---ceeeeeeeecccCCEEEEEEecCCCc
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TG---ELRQHLEIDAHVGGVNDIAFAHPNKQ 464 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~------------~~---~~~~~~~l~~h~~~v~~v~~s~d~~~ 464 (1132)
.+..|++++.+.+|||||.++|+|+.|..|+|.|++. +. .-....++..|.++|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3677999999999999999999999999999999871 11 1112447888999999999999998
Q ss_pred EEEEEEcCCCcEEEEECCCCeEEEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCC
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGN 539 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~ 539 (1132)
+|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++...- ..|.+
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999987654333332 245789999999976 89999999999999999998876643 34667
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
.|+++.+++.|+..++++. ||.|++||--+++++.++. .|.+..|.+..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 9999999999999999974 7889999999999999886 4555579999999999999999999999999999999
Q ss_pred eEEEEeCCCCCC---CcceEEEcCCCCEEEEEeC-CCcEEEEEcCCc
Q 001176 619 MLTTVDADGGLP---ASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 661 (1132)
Q Consensus 619 ~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 661 (1132)
++....+.+..+ .-+...|+....+++.-.. .+.+.-||.+++
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 999987653221 2244556666666655433 456777877665
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=229.57 Aligned_cols=282 Identities=20% Similarity=0.297 Sum_probs=234.6
Q ss_pred cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEcC
Q 001176 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 448 ~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~ 526 (1132)
.|.+.|.++... ++ .|+||+.||.+++|| ..|+..+.+.||.++|.+++|.-.. ....+++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488899999887 55 799999999999999 7899999999999999988876443 22469999999999999887
Q ss_pred CCCceE----EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-------------------------CCcee
Q 001176 527 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 577 (1132)
Q Consensus 527 ~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 577 (1132)
.+.... ...+|...|.+++..++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765433 34589999999999999999999987 7789999931 13356
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.++.||.. +|.++.|++ ...+++++-|.+|+.||+.++..+..+.... .++++..+|...+|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 77889988 899999998 6789999999999999999999998887643 589999999999999999999999999
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
.+++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876510
Q ss_pred ccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccc
Q 001176 738 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 738 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
.+...
T Consensus 335 ---------------------------------s~v~~------------------------------------------ 339 (423)
T KOG0313|consen 335 ---------------------------------SVVSQ------------------------------------------ 339 (423)
T ss_pred ---------------------------------ceeEE------------------------------------------
Confidence 00000
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC-EEEEee-CCeEEEEECCCCe-EEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
.+.+ | ...|.++.++|... .|++++ |+++++||+.+.+ ++..+.+|.+.|.++.|.. +..+
T Consensus 340 -----------s~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~I 403 (423)
T KOG0313|consen 340 -----------SLIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLI 403 (423)
T ss_pred -----------eeec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceE
Confidence 0112 6 77888888888555 567777 9999999999877 8999999999999999984 6799
Q ss_pred EEEeCCCcEEEEEc
Q 001176 895 AIGMEDSSVQIYNV 908 (1132)
Q Consensus 895 asg~~dg~v~iwd~ 908 (1132)
++|+.|.+|+|+.-
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=238.17 Aligned_cols=285 Identities=16% Similarity=0.255 Sum_probs=234.5
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
..+.|.+++|+|...+=++.+..-.+.+|+..+. ........ - ...+++++|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhhHHh---h-ccceeEEEeec
Confidence 4578999999997665555555556777764321 11111111 1 66799999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
||+++|+|+ .|.|+|||+.+...++.+.+|..+|..+.|+|+++.++++|++|+.+++||+.+......+.+|.+.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877889999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCCC-CEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC-CCce
Q 001176 927 LAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS 1004 (1132)
Q Consensus 927 l~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~-~~~~ 1004 (1132)
.+|+|-. .+++|||-||+|++||+.... ........| .+|..+.|-|.|..++++....|+|||+. ++..
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 9999965 589999999999999998753 112222223 46899999999999999999999999994 5554
Q ss_pred eecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEE
Q 001176 1005 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1084 (1132)
Q Consensus 1005 ~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 1084 (1132)
..... .|...|||+++..++..|++|+-|+.|++||+.+-+.+..+. -+..+++++.+| |+..++
T Consensus 231 l~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLsiavs~-dd~t~v 295 (487)
T KOG0310|consen 231 LTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLSIAVSP-DDQTVV 295 (487)
T ss_pred hhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceeeEEecC-CCceEE
Confidence 43332 269999999999999999999999999999999999888775 237899999999 889999
Q ss_pred EEeCCCcEEEEecCCCc
Q 001176 1085 LGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1085 s~~~Dg~i~vW~~~~~~ 1101 (1132)
.|..||.+.+=+....+
T Consensus 296 iGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREVKK 312 (487)
T ss_pred Eecccceeeeehhhccc
Confidence 99999999877665544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=220.10 Aligned_cols=270 Identities=11% Similarity=0.210 Sum_probs=215.9
Q ss_pred ecCCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccc
Q 001176 317 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 317 ~~~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
+...|+....-..+...-.....+.-.+.+..++||+.....+++++.||+++|||......
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------ 95 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------ 95 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------
Confidence 34444443333334444556677778899999999998887888999999999999543221
Q ss_pred cccccCCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 397 QNALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+...++.|...|.++.|++ +++.+++++.|++|++|+..-+..+. ++.||...|...+|+|...+ ++++++.|++
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 1123778999999999999 56678888999999999998877665 68999999999999998776 8999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCC-CEE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRL 553 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l 553 (1132)
+++||++..-.-..+..|...+.++.|+... ..+++||+.|+.|+.||+++.+. +..+.+|+-.|+.++|||.. ..|
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 9999998643334488999999999998654 48999999999999999998654 55788899999999999975 567
Q ss_pred EEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEEC
Q 001176 554 FSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (1132)
++++. |-++++||...+. .+.+...|.. -+..+.|++ ++.++++++-|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 78876 7889999998554 4445554444 788888887 4578899999999999984
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=261.72 Aligned_cols=303 Identities=17% Similarity=0.254 Sum_probs=235.8
Q ss_pred cccceEEEEEecCCceEEeec--ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 768 AASKVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
+...|.++.++|||..+++++ .|+.+++|+...--. ....++..-...+. .+ ..| .+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~-~m--~~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC-TM--DDH-DGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe-ee--ccc-cCceeEEEE
Confidence 345689999999999999999 799999997642100 01112221011111 11 237 899999999
Q ss_pred eeCCCEEEEee-CCeEEEEECCC------------------CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 001176 846 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 906 (1132)
Q Consensus 846 s~dg~~la~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 906 (1132)
+|||++||+|+ |+.|.||+... ++....+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 67799998762 256788999999999999999 99999999999999999
Q ss_pred EcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 907 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 907 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
+..+.+.+.++++|.+.|..+.|.|-|+++||-++|++|++|++......+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977754322 233333333333457889999999999
Q ss_pred EEE--eC---CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccC-----CC------------EEEEEecCCcEEEEeC
Q 001176 987 LVV--HE---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCD-----GL------------LVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 987 ~~~--~d---~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~d-----g~------------~las~~~dg~i~vwd~ 1043 (1132)
++. -+ .++.+.+- +.+.-..+ -+|.+++..++|+|. .+ .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~L---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDL---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeee---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 22 35667665 33333333 466899999999971 11 6899999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
...+++..+. +--...++.++|+| ||..|+++|.||+|.+..++..|
T Consensus 312 ~~~RPl~vi~----------~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIH----------NLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhh----------hhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 8887765543 12346788999999 99999999999999999998766
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=219.70 Aligned_cols=240 Identities=22% Similarity=0.274 Sum_probs=202.2
Q ss_pred CCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCC--eEEEEeCCCcEEEEEcc
Q 001176 833 SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 833 ~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~--~lasg~~dg~v~iwd~~ 909 (1132)
..| ...++++|. ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|++|+.||.|.+|+..
T Consensus 40 ~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 40 SAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 347 899999998 689999999 99999999999999999999999999999998 543 88899999999999999
Q ss_pred cceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 910 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 910 ~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
..+++..+++|.+.|+.++.+|.|++.++.+.|+.+++||+-.|+......+.. ..+.+.|+|.|.+++++
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVS 186 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999999998877433222221 23569999999999999
Q ss_pred eCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCC
Q 001176 990 HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1068 (1132)
Q Consensus 990 ~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1132)
....|-+|.+ +......... ...+.++.|. ++..|++|..|+.|.+||.+++.+.+.+. +|..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-----------AH~~ 250 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-----------AHEN 250 (362)
T ss_pred eccEEEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-----------cchh
Confidence 8899999999 4444333322 3456666664 56788999999999999999987776665 8888
Q ss_pred CcEEEE-eCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1069 HPLVIA-PHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1069 ~v~~~~-~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+|-.+. |...++.+|+|++.||.|+|||+....
T Consensus 251 RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 251 RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred heeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 998888 443367899999999999999998874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=246.58 Aligned_cols=261 Identities=17% Similarity=0.288 Sum_probs=226.5
Q ss_pred eeccCCcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCC-
Q 001176 326 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND- 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 403 (1132)
++.|+...+.+..... +...|+++.|+++|+ +||+|..+|.|.|||....+.+.. +.+
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 4555566666555555 489999999999999 699999999999999998876654 445
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.|||...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999997 77899999999999999998776543 3789999999999999999 899999999999999988
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
..++..+..|.+.|.+++|+|-.. .+||+|+ .|++|++||..++..+..+. .+..|.++.|++..+-|+++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 889999999999999999999876 6888874 69999999999776655544 5678999999999988777654 3
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
.+..|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999999999999999998 7999999999999999999999999998764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=236.28 Aligned_cols=302 Identities=16% Similarity=0.218 Sum_probs=235.8
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
.|..+...+. |+..|.++++.|.|-+ +++|+.|.+|++||+........ .|+. +.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhhc-------------cCcccccccce
Confidence 3455555666 7789999999999995 99999999999999986543321 1221 22345568999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCcee---------eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~---------~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
++||+.|..|++.+.....+|+|-++.+... ....-+||...++|.+|+|+.+. .++|++.||+++|||+
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 9999999999999888899999987654332 22345689999999999999988 7999999999999999
Q ss_pred CCCeE-EEEec-----CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCC--eEEEEEEcCCC
Q 001176 482 VAGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGN--WCTMMAYSADG 550 (1132)
Q Consensus 482 ~~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~--~v~~~~~s~~~ 550 (1132)
..-+. +..++ +..-++++++|+++ |.+|++|+.||.|.+|+....... ..-..|.. .|+|++||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 86543 23332 34567888899775 488999999999999997554332 23345555 89999999999
Q ss_pred CEEEEEecCCCCCCeEEEEeCCCC-ceeeeeccccC-CceEEEEEeCCCCEEEEEE------cCCeEEEEECCCCeeEEE
Q 001176 551 TRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 622 (1132)
++|++-+. |..+++||++.. +++....+... -.-+.++|+|+.+.+++|. ..|.+++||..+...+..
T Consensus 377 ~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999875 788999999864 45555544322 1345689999999999975 457899999999999999
Q ss_pred EeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 623 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
+.... ..|..+.|+|.-+.|++|+.||++++|=
T Consensus 453 i~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 453 IDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ecCCC--ceEEEEeecchhhheeeecCCCceEEEE
Confidence 88763 3789999999988999999999999874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=245.48 Aligned_cols=293 Identities=19% Similarity=0.261 Sum_probs=238.9
Q ss_pred CCCCee---EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 342 QGSNVM---SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 342 h~~~V~---~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
|...|. ++..++.+.++|++|+.||.|++|++........ .+ -.+.+..|.++|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 5566655545899999999999999875433211 11 1123667999999999999999
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE-ecCCCcEEEEEEcCCCcEEEEECCCCe--EEEE------
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYT------ 489 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-s~d~~~~~l~s~~~dg~v~vwd~~~~~--~~~~------ 489 (1132)
.|++++.|.+|++|+...+. -.+..++..|.+.|.|+++ .++.. ++||||-|+.|.+||+.++. .+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 2344478889999999999 66666 89999999999999999883 2322
Q ss_pred --ec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 490 --FE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 490 --~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
+. |+...|++++.++.+ ..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 33 788999999987654 89999999999999999999999999999999999999999999999986 8899
Q ss_pred EEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 567 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
++||+...+++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+++......+-... .+|..+..+.+.+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCcee
Confidence 9999999999999999998 69999999999999999999999999998843322222222 26777777765555577
Q ss_pred EeCCCcEEEEEcC
Q 001176 647 TTSDNGIKILANS 659 (1132)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1132)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8899999999764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=236.31 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=213.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+++.|.++++ .+++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998876 223346778888999999999999 788899999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+.+...+|.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+..... ....+..++.+ ...++++-.
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999986554 449999999999999999866655433 23344455554 344555543
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC--CCCCcceEEEc
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG--GLPASPRLRFN 638 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s 638 (1132)
|..|++||.++..+......+. .|+++..++++..+++.+.|..+.+.|+++.+....+...+ .....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 6779999999999999888766 79999999999999999999999999999998888876542 22357899999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 639 KEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
|++.|+++|+.||.|+||++.++ ++...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999988 555444
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-26 Score=231.35 Aligned_cols=297 Identities=14% Similarity=0.233 Sum_probs=235.3
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeec----ccccccccccccCCCCcCeEEEE
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..+. |.-+|.||+++||++ +.++++.+++|.=|++.+|+.... +|.- .....+....- .+|...|.+++
T Consensus 136 ~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~a 209 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLA 209 (479)
T ss_pred eeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEE
Confidence 3444 889999999999999 599999999999999999975421 1111 10112222222 48999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
.|+||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhC
Confidence 99999999999999999999999988766 5889999999999987666 689999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|+..|.+|...... ..+.+|+.|+++++|++. ......+.++.+.+-|++|-.+ ..+++|+. +|.|.+|++.
T Consensus 285 Hqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~ 356 (479)
T KOG0299|consen 285 HQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLL 356 (479)
T ss_pred Cccceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeec
Confidence 99999999765433 556666699999999994 4555677778889999999665 56677764 8889999999
Q ss_pred CCceeeeeccccC-----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----eeEEEEeCCCCCCCcceEEE
Q 001176 573 EGAIKRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRF 637 (1132)
Q Consensus 573 ~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~ 637 (1132)
..+++.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. .+.|++++|
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f 433 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAF 433 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEE
Confidence 9888876643211 16889999999999999999999999998876 44555553 346999999
Q ss_pred cCCCCEEEEE-eCCCcEEEE
Q 001176 638 NKEGSLLAVT-TSDNGIKIL 656 (1132)
Q Consensus 638 s~~~~~l~~~-~~dg~i~iw 656 (1132)
+++|+.+++| +....+--|
T Consensus 434 ~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 434 SNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccCCCEEEEeccccccccee
Confidence 9999966665 334344334
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-25 Score=248.11 Aligned_cols=237 Identities=12% Similarity=0.128 Sum_probs=185.8
Q ss_pred cCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCCc-e----eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 401 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE-L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~~-~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 6789999999999996 78999999999999999986432 1 122357789999999999999874 568999999
Q ss_pred cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEE-----EEEEcCC
Q 001176 475 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSAD 549 (1132)
Q Consensus 475 ~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~-----~~~~s~~ 549 (1132)
+|+|||+.+++.+..+. |...|.+++|+++ |.+|++++.|+.|++||++++.....+.+|.+.+. ...|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswspd--G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999887776 6678999999875 48999999999999999999988888888876543 2345689
Q ss_pred CCEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCC-ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC
Q 001176 550 GTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+.++++++.++..+++|++||++. ++++..+..+... .+......+++.++++|+.|+.|++|++..+. +..+....
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~ 304 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK 304 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc
Confidence 999999887554457899999985 5666555433321 22333334557888899999999999998764 44444444
Q ss_pred CCCCcceEEEcCCCC
Q 001176 628 GLPASPRLRFNKEGS 642 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~ 642 (1132)
...++.+++|.|+..
T Consensus 305 s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 305 SCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCCccceEEccccc
Confidence 455788999999653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=228.45 Aligned_cols=609 Identities=14% Similarity=0.170 Sum_probs=339.1
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
-+..|. |.+.|+.+.|||-...|||+|+.|..|+||.+..|-... .......+.+..-.|-|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 455566 999999999999766799999999999999998543211 111222355556688999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEEEEecCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 493 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h 493 (1132)
|..+-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 977666666688999999999987655 7889999999999999999 999999999999999874 6778888888
Q ss_pred CCC-eEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCce-EEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 494 EAP-VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSR-VDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 494 ~~~-v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
.+. -..+.|.. +-..|++.+.+ ..|++||.+.-... ..+... ...|.---|.||.++|+.++ .++..+
T Consensus 213 ~~~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l 287 (1012)
T KOG1445|consen 213 GGMRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKL 287 (1012)
T ss_pred ccchhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceE
Confidence 754 22344533 33567666654 46899998765432 222222 12444556889999988876 367788
Q ss_pred EEEeCCCCceee--ee----------------------ccccC-------Cce-EEE---------EEeCCCCEEEE-EE
Q 001176 567 VEWNESEGAIKR--TY----------------------SGFRK-------RSL-GVV---------QFDTTRNRFLA-AG 604 (1132)
Q Consensus 567 ~~wd~~~~~~~~--~~----------------------~~~~~-------~~v-~~~---------~~~~~~~~l~~-~~ 604 (1132)
+.+.+...++.. .+ .+.-. ..| -.. .|+.|- +==+ |.
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DL-fPeT~G~ 366 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDL-FPETRGA 366 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhh-CccccCC
Confidence 888875433210 00 00000 000 000 011100 0000 00
Q ss_pred cCC-eEEEEECCCCeeEEEEe------CCC----------------CC-------------CCcceEEE-cCC-CCEEEE
Q 001176 605 DEF-QIKFWDMDNMNMLTTVD------ADG----------------GL-------------PASPRLRF-NKE-GSLLAV 646 (1132)
Q Consensus 605 ~dg-~i~iwd~~~~~~~~~~~------~~~----------------~~-------------~~v~~~~~-s~~-~~~l~~ 646 (1132)
.-+ ...-|=-.+.+.++... .|+ .. ..++++.= -|| ...=++
T Consensus 367 ~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV 446 (1012)
T KOG1445|consen 367 EPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAV 446 (1012)
T ss_pred ccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCc
Confidence 000 00001001111111000 000 00 00000100 011 000000
Q ss_pred EeCCCcEEEEE------------------cCCcc-eeeeecc-------ccccccccCCCCCCCCCcccccc--------
Q 001176 647 TTSDNGIKILA------------------NSDGV-RLLRMLE-------GRAMDKNRCPSEPISSKPLTINA-------- 692 (1132)
Q Consensus 647 ~~~dg~i~iw~------------------~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-------- 692 (1132)
. ....++-.+ ...+. ....... ...........+.....+|+|.-
T Consensus 447 ~-~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~ 525 (1012)
T KOG1445|consen 447 P-KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPV 525 (1012)
T ss_pred C-cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCc
Confidence 0 000000000 00000 0000000 00000000000000000111100
Q ss_pred -----cCCCccccccccCCCCCCC--CCCCCcccC------------------ccCcCCccccccccc---ccccccCce
Q 001176 693 -----LGPASNVSAAIAPTLERPD--RGPPAVSIS------------------SLGTIDGSRLVDVKP---RVAEDVDKI 744 (1132)
Q Consensus 693 -----~g~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~~~~~~~~~~~~~~---~~~~~~~~v 744 (1132)
.+....++..-...+..+- .....++.+ .+.+....+..+.+. -+++..|.|
T Consensus 526 ~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 526 NFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred ccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 0000000000000000000 001111111 111111111222222 233556899
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEec-CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCc
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 823 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~ 823 (1132)
.+|++.. ++..-.-.++.-.....|+.+.|.| |..+|++++.||.|++|.+..+.......
T Consensus 606 ai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--------------- 667 (1012)
T KOG1445|consen 606 AIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--------------- 667 (1012)
T ss_pred EEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC---------------
Confidence 9999986 2333333344444667899999998 77889999999999999987543321111
Q ss_pred CcccccCCCCCCCCCCeeEEEEee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 001176 824 TLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901 (1132)
Q Consensus 824 ~~~~~~~~~~~h~~~~v~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 901 (1132)
.....+.. | ...|+.+.|+| -...|++++ |-+|++||+.+++....+.+|.+.|..++||| +|+.+|+.+.||
T Consensus 668 -tPe~~lt~--h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg 742 (1012)
T KOG1445|consen 668 -TPEKILTI--H-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDG 742 (1012)
T ss_pred -Ccceeeec--c-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCc
Confidence 01111333 7 88999999999 455778887 99999999999999999999999999999999 999999999999
Q ss_pred cEEEEEcccce-eeeeeccc-cCCeeEEEEcCCCCEEEEEcCC----CcEEEEECCCccc--ccceeeeCCCCCCCCCCC
Q 001176 902 SVQIYNVRVDE-VKTKLKGH-QNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKWEK--LKSRFIQAPAGRQSPLVG 973 (1132)
Q Consensus 902 ~v~iwd~~~~~-~~~~l~~h-~~~V~~l~~spdg~~l~s~~~D----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 973 (1132)
+|++|+-.+++ .+..-.+. ..+--.+.|.-||++++..|.| .+|.+||.++-.. +....+.... .
T Consensus 743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------s 815 (1012)
T KOG1445|consen 743 TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------S 815 (1012)
T ss_pred eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-------c
Confidence 99999987764 33322221 1233457888899999988876 4588888876331 1111111111 1
Q ss_pred ceeEEECCCCcEEEE-E-eCCeEEEEeC
Q 001176 974 ETKVQFHNDQTHLLV-V-HESQISVYDS 999 (1132)
Q Consensus 974 v~~~~~s~dg~~l~~-~-~d~~v~vwd~ 999 (1132)
+.--.+.+|...|+. + .|..|.+|.+
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEe
Confidence 222345677776666 4 6889999998
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=220.81 Aligned_cols=298 Identities=15% Similarity=0.198 Sum_probs=245.9
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
..++++.+. |+++||.++-..... ++.+++.|.+.+||.+++|.++.+ +.||.+.|++|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsi 196 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSI 196 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeE
Confidence 445666777 999999999988776 899999999999999999999875 78999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEe------cCC-------------------------------CceeeeeeeecccCCEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTY------NPT-------------------------------GELRQHLEIDAHVGGVN 454 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~------~~~-------------------------------~~~~~~~~l~~h~~~v~ 454 (1132)
+|++.+.++++++.|++.+||.. ... ..-.+...+.+|.+.|.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 99999999999999999999972 110 00113446889999999
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC-ceEE
Q 001176 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVD 533 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~ 533 (1132)
+..|...|+ .+++++.|++..+||+++|+.+..+.||....+.++-+|.. .++++.+.|.+.++||++..- .+..
T Consensus 277 a~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 277 ACDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred ehhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeee
Confidence 999999999 69999999999999999999999999999999999988876 899999999999999998533 3457
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 612 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1132)
+.+|...|+++.|..+. .+++++. |.+|++||+++.+ ++.++.... +++.++.+..+..++.--.+..|++|
T Consensus 353 FQGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ecccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEE
Confidence 89999999999998775 4566653 8889999998654 566665433 68889999887888888889999999
Q ss_pred ECCCCeeEEEE--eCCCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEcCCc
Q 001176 613 DMDNMNMLTTV--DADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 613 d~~~~~~~~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|++..++.... ...++...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99765543322 223445578999998654 35889999999999998654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=224.31 Aligned_cols=284 Identities=15% Similarity=0.207 Sum_probs=245.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
.+++++...|... .+.+|+.|..+.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4789999999854 689999999999999999887764 88999999999999999999999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC--CCCCeEEEE
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 501 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~i~ 501 (1132)
+.|..|+||......... ....|.++|+.+...|.|. +|++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998876444 4678999999999999999 899999999999999999998876653 334589999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
|+|++ .++.+|..|+.|++||+.+......+.+|.++|..++|+.+|-+|+++.. |+.|++||++..+...++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 98855 89999999999999999999999999999999999999999999999985 6679999999988888887
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
......+.++.|.+.|.+++.+|.|=.|++++-.+.........+.+.+..+++.|..+.+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 76655799999999999999998887777777555443333333333446789999999999999999999888754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=240.33 Aligned_cols=284 Identities=15% Similarity=0.298 Sum_probs=240.6
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE-E
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v 411 (1132)
.+..+.+. |.+.|..+++.+.. .++++|.||++++|+-..++.+... .+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccc
Confidence 34566777 99999999988887 4888999999999998776655421 25578888887 8
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
++-+ ++-.|++|+.|++|.+|...+...+. .|.+|...|.|++...++. ++|||.|.++++|. .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999887655 7999999999999877775 89999999999996 56677789
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...|++++.-|. +.++|||.|.+|++|. .++....+.+|...|+.+++-+++. +++|+ +||.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeec----CCceEEEEe
Confidence 999999999998765 4899999999999995 4677889999999999999988765 45665 489999999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+ +|+.+..+.+|.. -+.++...+++..++++|+|++++||+.. ++.+.+..+.- .|+++.+-++|. +++|+.|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 9 7999999999998 89999988888999999999999999976 77888877643 689999988886 6779999
Q ss_pred CcEEEEEcCCc
Q 001176 651 NGIKILANSDG 661 (1132)
Q Consensus 651 g~i~iw~~~~~ 661 (1132)
|.||||.....
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999987643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=249.38 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=203.6
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce----------eeeeeeecccCCEEEEEEec-CCCcEEEEEEcC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 472 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~ 472 (1132)
|-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3445667777788777888888887888876554322 11124779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 473 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 473 dg~v~vwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
|++|++||+.++ +++..+.+|...|.+++|+|..+ .+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998643 6999999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCe-eE
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 620 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 620 (1132)
|+|+|++|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999975 888999999999999999888764556678999888888765 47999999998754 33
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 661 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 661 (1132)
.....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3333332 22455667899999999887 5999999999987
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=230.37 Aligned_cols=287 Identities=13% Similarity=0.187 Sum_probs=233.7
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
+..|. |.++|.|++=+|..-..+|+|+.||.|+|||+.+.+++.+ +..|.+.|..|++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc
Confidence 33445 9999999999998844799999999999999999887764 678999999999977
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
..+++++.|.+|+.|.++.. ..+ ++.+ ...+..+.-+..+. .++|||. .|.|||.+...++..+.--..
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred --cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCC
Confidence 77889999999999998873 222 3332 34566666666566 7899886 589999999999999988888
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC-
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 574 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 574 (1132)
.|.++.|+|... .+|++++.|+.|.+||++...++..+.. ...-+.++|+|.+-.++++. +|..++.+|++..
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLS 262 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhc
Confidence 999999999865 7899999999999999999887665432 23456889999766666664 4888999999864
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
.++..+.+|.. .|..++|+|.|+.+++||.|.+|+||..+.+.......... ...|.++.|+.|.+++++|++|+.|+
T Consensus 263 ~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCccee
Confidence 56777888877 89999999999999999999999999998876554432211 23689999999999999999999999
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
+|...-.
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=213.71 Aligned_cols=269 Identities=20% Similarity=0.271 Sum_probs=216.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
..+.|++|.|+|.+.. |++++.||++++||+...+... .-.|+.++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4578999999999885 5556799999999998875443 224999999999986 56788
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++||.+......++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987553 678999999999998777 79999999999999998755555554 334788886
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC----c
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----A 575 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 575 (1132)
. .++.|+.|+.|..+.+||+++......... -.-.+.++++.|++.-.++++. +|+|.+=.++.. +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 347899999999999999998776553222 2237899999998877777765 666776655544 3
Q ss_pred eeeeeccccCC--------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 576 IKRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 576 ~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
....|+.|... +|++++|+|-.+.|++||.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 44566666432 6889999999999999999999999999999888887655 3369999999999999998
Q ss_pred eC
Q 001176 648 TS 649 (1132)
Q Consensus 648 ~~ 649 (1132)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=250.03 Aligned_cols=242 Identities=20% Similarity=0.289 Sum_probs=212.2
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. .+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888887 67899999999999999999876653 3889999999999987455 899999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
|.+.+.+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998643 678899999999999999999999999999999999998 789999986 7
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
+.|.+||+.+++++.++.+|.. .|.++.+.+. +++++|+.|+.|++||+.+. +++.++..|.. -+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999887 8999988765 89999999999999999999 99999988865 344443 4578
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 643 LLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
+|++++.|++|++||..++ .+.+.+
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~-~~~~~~ 449 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG-ECLRTL 449 (537)
T ss_pred eeEeccccccEEEeecccC-ceeeee
Confidence 9999999999999998887 444433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=242.12 Aligned_cols=242 Identities=19% Similarity=0.225 Sum_probs=207.6
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEecCCCce---eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-
Q 001176 410 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 484 (1132)
Q Consensus 410 ~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~- 484 (1132)
.+..++ .+++|.+||.||.|++|++...... .....++.|.+.|++++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 444444 6778999999999999998754331 12336788999999999999998 7999999999999999887
Q ss_pred -eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCeEEEEEEcCCCCE
Q 001176 485 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 552 (1132)
Q Consensus 485 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 552 (1132)
-++.++..|.+-|.++++- ..+...+++|+.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 5778899999999999983 23448999999999999999997633 11 122 55668999999999988
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
+++|+. .+.+++||.++++.+..+.||.+ .|.++..++||..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888876 55699999999999999999998 899999999999999999999999999999999999988865 69
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888775
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=227.47 Aligned_cols=251 Identities=19% Similarity=0.239 Sum_probs=213.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeee--------------eee-ecccCCEEEEEEecCCCcE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 465 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~v~~v~~s~d~~~~ 465 (1132)
+..|.-+|.|++++||++++.+++.+++|.=|++.++...+-. ..- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4569999999999999999999999999999999887643100 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
+|++|+.|..|.|||.++.+.++.+++|.+.|.+++|-... .-+++++.|++|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999997655 7899999999999999999888889999999999999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
...-++.+-+++. |+++++|++.. +....|.++.. .+.|++|-. ..++++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888877777765 88899999953 33345666655 789999875 46899999999999999999998877653
Q ss_pred CCC----------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 626 DGG----------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 626 ~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
..+ ...|++++..|...++++|+.+|.|++|.+.++.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 211 1257899999999999999999999999998873
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=196.90 Aligned_cols=302 Identities=14% Similarity=0.117 Sum_probs=228.9
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC-----cccccCCCCCCCCCCeeE
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-----LMTNDINESKPTEESAAC 842 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~h~~~~v~~ 842 (1132)
....|++++|.|.|...++++...++++...+.. -++..+. +.....+...|+.+.|+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l----------------~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL----------------IDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccc----------------cCcccccccccCCCeEEeeeccccCccEEE
Confidence 4567999999999999999999999998755321 1111111 111111222233999999
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeE-----EEEeeCCCCCeEEEEEeCC---CCCeEEEEe-CCCcEEEEEcccce
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGM-EDSSVQIYNVRVDE 912 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~sp~---~~~~lasg~-~dg~v~iwd~~~~~ 912 (1132)
.+|||+|.++|+|+ |.+|++..+....+ -..|.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 99999999999999 88898876543222 2456779999999999642 467888765 56788888999999
Q ss_pred eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eC
Q 001176 913 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 991 (1132)
Q Consensus 913 ~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 991 (1132)
....+.+|.+.|.++ ++-+|-++++|+.|.+|++||+.-..+....-.....+. -....|.+++..|.|++|+++ .|
T Consensus 175 ~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-lessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-LESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC-cccceeEEEEECCCcceeeeccCC
Confidence 999999999999886 345788999999999999999987553332111111111 112678999999999999997 68
Q ss_pred CeEEEEeCC-CCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCc
Q 001176 992 SQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1070 (1132)
Q Consensus 992 ~~v~vwd~~-~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1070 (1132)
....+||+. +..+..+ +.|+..|.++.|||...++++++.|..|++-|+.. .+-. .+|..++..|...+
T Consensus 253 ssc~lydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~------el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAH------ELPIMVVAEHKDKA 322 (350)
T ss_pred CceEEEEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhh------cCceEEEEeccCce
Confidence 899999994 4555554 55699999999999999999999999999999983 3322 24555667888999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1071 LVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
+.+.|+|++ --+++.+.|.++.+|-+.
T Consensus 323 i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCcc-ceeeeccCcceEEEeccC
Confidence 999999944 678889999999999764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=246.14 Aligned_cols=274 Identities=17% Similarity=0.248 Sum_probs=209.3
Q ss_pred ccccceEEEEEecCCceEEeecccceeEEEeeccccC------C------------------CCCccccccc--------
Q 001176 767 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N------------------PSGKATANVA-------- 814 (1132)
Q Consensus 767 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~~~~~~~~-------- 814 (1132)
.|.+.|.++.|++||++|++++.|+.|+||.+...+. . ..........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999876110 0 0000000000
Q ss_pred -c-ccccCCCcC---cccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeC
Q 001176 815 -P-QLWQPPSGT---LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 888 (1132)
Q Consensus 815 -~-~l~~~~~~~---~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 888 (1132)
. .+.+..... .....+.| | ...|..+.||.++ +|++++ |.+||+|++...++++.|. |.+-||||+|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CccccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 0 011111111 11112444 8 9999999999765 566666 9999999999999999998 999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 968 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 968 (1132)
.|.+++++|+-||.||||++...+.+.-...+ .-|++++|.|||+..+.|+-+|.+++|++...+......+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999988877665555 77999999999999999999999999999987766555555554444
Q ss_pred CCCCCceeEEECCCCc--EEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 969 SPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 969 ~~~~~v~~~~~s~dg~--~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
.....|+.+.|.|... .|+++.|..|+|||. +...+..+...+. ...-.+..|+.||++|+++++|..|+||++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 3334699999987654 777799999999999 5555555543332 33445678999999999999999999999854
Q ss_pred cc
Q 001176 1046 LR 1047 (1132)
Q Consensus 1046 ~~ 1047 (1132)
..
T Consensus 578 ~~ 579 (712)
T KOG0283|consen 578 FN 579 (712)
T ss_pred Cc
Confidence 43
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=210.99 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=196.1
Q ss_pred CCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 402 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 402 ~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
...++.|.+++||| ...++++++.|++||+|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556777899999999999987433322 34567999999999999998 799999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++ +..+..|.++|..+.|.+...-..|+|||.|++|++||.+...++..+.... +++++.. -..+++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677789999999999887766799999999999999999888887776544 3444433 2345555543
Q ss_pred CCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eeEEEEeCCCC-------CC
Q 001176 561 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LP 630 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 630 (1132)
++.|.+|+++.+. ..+.......-.++|++..++....+.|+-+|.+-|..++.+ +.-..++.|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 6679999997653 223333333336899999999988899999999999999876 33344555542 23
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999998889999999999999997654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=209.32 Aligned_cols=243 Identities=18% Similarity=0.249 Sum_probs=206.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|.++|+++|. +|.++|+|+.|-+|+|||+.+..++. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 5679999999999 68999999999999999999987666 566799999999999876422589999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
...-.++.++++|.+.|+.++++|++ .+.++.+.|+.+++||+-.++.-........ -+.+.|+|.|.+++..+
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~--- 187 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG--- 187 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe---
Confidence 99999999999999999999999977 8999999999999999988876665544332 34499999999888876
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--c
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--N 638 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s 638 (1132)
...|-+|.+.+......+.... .+.++.|. ++..+++|+.|+.|.+||.++..+...+..|.. .|..+.+ .
T Consensus 188 --~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 --RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTN 260 (362)
T ss_pred --ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEec
Confidence 3459999998877666555432 46666665 467899999999999999999999999988855 7888874 4
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|++.+|++++.||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 57899999999999999999765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-26 Score=224.24 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=228.9
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd 524 (1132)
.|.||.+.|.|++=+|..-. .++||+.||.|++||+.+..++.+|+.|.+.|.+|++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998733 699999999999999999999999999999999999865 5799999999999998
Q ss_pred cCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCE-EEEE
Q 001176 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAA 603 (1132)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~ 603 (1132)
++.. ....+. ....+..+.-+..+..+++||. .|.|||.....++..+.-..+ .|.++.|+|.... |+++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 222222 2345566666667778888864 399999999999999987666 7999999998855 5556
Q ss_pred EcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCC
Q 001176 604 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683 (1132)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1132)
+.|+.|.+||++.+.++..+.... .-+.++|+|++-.+++|+.|..++.+|...-...+....
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------------- 269 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------------- 269 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhc--------------
Confidence 699999999999999988876543 357899999998999999999999999875533222222
Q ss_pred CCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEec
Q 001176 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763 (1132)
Q Consensus 684 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 763 (1132)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 764 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 764 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
+|.+.|.++.|||.|+.+++++-|.+|+||...... +..+.. .+. -..|.|+
T Consensus 270 ---dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-------------------SRdiYh--tkR----Mq~V~~V 321 (433)
T KOG0268|consen 270 ---DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-------------------SRDIYH--TKR----MQHVFCV 321 (433)
T ss_pred ---ccceeEEEeccCCCcchhccccccceEEEeecCCCc-------------------chhhhh--Hhh----hheeeEE
Confidence 266788999999999999999999999999765311 111111 001 2358999
Q ss_pred EEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 844 ALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 844 ~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.||.|.+|+++|+ |+.|++|.....+.
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999 79999999865443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=212.38 Aligned_cols=331 Identities=12% Similarity=0.212 Sum_probs=249.9
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
++++.+.||.+ .|..++.......+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 34567888888 788888777777888899999999999999999999998865 899999999999999999999999
Q ss_pred EEEcCCcceeeeec--cccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccc
Q 001176 655 ILANSDGVRLLRML--EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 732 (1132)
Q Consensus 655 iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1132)
||...-..+..... .+|+..
T Consensus 216 IW~~av~~~vP~~~a~~~hSsE---------------------------------------------------------- 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSE---------------------------------------------------------- 237 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCch----------------------------------------------------------
Confidence 99753221100000 000000
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccc
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
.. .-..|. + .+-..-....|| .+|++
T Consensus 238 eE--~e~sDe-------------------------~-~~d~d~~~~sD~---------~tiRv----------------- 263 (481)
T KOG0300|consen 238 EE--EEHSDE-------------------------H-NRDTDSSEKSDG---------HTIRV----------------- 263 (481)
T ss_pred hh--hhcccc-------------------------c-ccccccccccCC---------ceeee-----------------
Confidence 00 000000 0 000000000111 11221
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||+++++.+..+.||..+.+.+.-+| ..
T Consensus 264 -------------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ 326 (481)
T KOG0300|consen 264 -------------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ 326 (481)
T ss_pred -------------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence 1122444 7 88999999999999999999 99999999999999999999999999999999 89
Q ss_pred CeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 970 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 970 (1132)
+++++.+.|.+.++||.... ..+..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+-.... .....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRspl----ATIRt---- 397 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPL----ATIRT---- 397 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcc----eeeec----
Confidence 99999999999999999743 457789999999999999865 468999999999999998754221 11111
Q ss_pred CCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCceeecC--CCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEeCCC
Q 001176 971 LVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDG--LLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 971 ~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~--~~~~h~~~i~~i~~s~dg--~~las~~~dg~i~vwd~~~ 1045 (1132)
..++..++.+..+..+++- ++..|++||+++..+..+. ...+|..-|++++|+.+. .-|++++-|..+.=|++..
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 1467889999999899984 6688999999998887776 457889999999998654 3588889999999999876
Q ss_pred c
Q 001176 1046 L 1046 (1132)
Q Consensus 1046 ~ 1046 (1132)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=206.77 Aligned_cols=254 Identities=19% Similarity=0.249 Sum_probs=186.9
Q ss_pred ceEEEEEecCCceEEee-cccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 771 KVVRLIYTNSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..+.++|.||.+.+++. .....+++|.+...+. |..... ..-||-. .+ ...| .-.+..+-....+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~-------~f-~~kh-~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL-------EF-ERKH-QVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc-------cc-chhc-ccceEEEeecCCc
Confidence 45788999998876654 4567899997754322 111100 0011100 01 1124 6667778888899
Q ss_pred CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc---c-----eeeeeeccc
Q 001176 850 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---D-----EVKTKLKGH 920 (1132)
Q Consensus 850 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h 920 (1132)
+++++++ |.+|.+|++. |+.+..+......-+..+.|| +|++||+++..-.|++|.+-- | ..+..++||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999 8899999998 888888887777778899999 999999999999999998752 2 234468999
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccc--eeeeCC-CCCCCCCCCceeEEECCCCcEEEEEeCCeEEEE
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS--RFIQAP-AGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 997 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vw 997 (1132)
.+.|..++||++...++|++.||++++||++-.-...+ ..+... ............++++|.|+.|+++....+.+|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 99999999999999999999999999999864221111 112111 111111244568999999999999999999999
Q ss_pred eC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 998 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 998 d~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
.. +++....+. ..|...|++++|++||+++|+++ |..++++.-
T Consensus 358 ~se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 358 ASEDGKDYPELE--DIHSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred EcccCccchhHH--HhhcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 99 666555443 45699999999999999999988 888988763
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=206.20 Aligned_cols=251 Identities=20% Similarity=0.297 Sum_probs=209.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~v 478 (1132)
...|++.|.++...--|++||+|+.|++|+|+.++.+.......+|.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 456999999999888999999999999999999998887677779999999999999987 677 9999999999999
Q ss_pred EECCCCeE--EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCC---C
Q 001176 479 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 550 (1132)
Q Consensus 479 wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~---~ 550 (1132)
|.-++|+- .+.+..|+..|++++|.|..-|-.|++++.||.|.+.+.+..+. ......|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99887753 35667899999999999999999999999999999999887622 3355678889999999986 4
Q ss_pred -----------CEEEEEecCCCCCCeEEEEeCCCCc--eeeeeccccCCceEEEEEeCCC----CEEEEEEcCCeEEEEE
Q 001176 551 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 551 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd 613 (1132)
+.|++++. |..|.+|+...++ ..+++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888875 7789999988764 4456888888 89999999965 5799999999999998
Q ss_pred CCCC-e-eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 614 MDNM-N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 614 ~~~~-~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.+.. + ...++ .+.....+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 1 11111 12223468999999999999999999999999754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=236.68 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=182.8
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe--------EEEEecCC
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 493 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~~h 493 (1132)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56688999999876543 3368899999999999997 56 89999999999999998642 34567899
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998652 456899999999999999888766665 4578999999999999998864 77899999999
Q ss_pred CceeeeeccccCCc----eEEEEEeCCCCEEEEEEcCC----eEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 574 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 574 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
++.+.++.+|.... +....|++++.+++++|.++ .|++||++. .+++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568899999988664 799999995 6677666655443333344445578899
Q ss_pred EEEeCCCcEEEEEcCCc
Q 001176 645 AVTTSDNGIKILANSDG 661 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~ 661 (1132)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-21 Score=210.95 Aligned_cols=277 Identities=15% Similarity=0.208 Sum_probs=221.7
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
-|+.+-+.++|.|+|. ++++++.||.|++|+......... .+.-+...|.+++. ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--cccce
Confidence 3888999999999999 789999999999999876532110 02226777887776 55699
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++|+.+++|.+|....++.-. .+...+-++++++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876533 2334566899999999999 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------C-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------P-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.++|.+ .+|++.+.||.|++||+.++.....+.. . ...+..++|+|+|..++..+. ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 998865 8999999999999999998776554432 1 346788999999766666554 7789999999
Q ss_pred CCceeeeeccccCC-ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 573 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
+......+...... .+.++.|+|+|.||++++.||.|.|||+++.+. |.....|.+++|.|+.+.+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99888887654332 488999999999999999999999999997222 33345789999999877665544444
Q ss_pred cEEE
Q 001176 652 GIKI 655 (1132)
Q Consensus 652 ~i~i 655 (1132)
...+
T Consensus 293 ~~~~ 296 (933)
T KOG1274|consen 293 TLGV 296 (933)
T ss_pred cccc
Confidence 4333
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=214.79 Aligned_cols=240 Identities=17% Similarity=0.259 Sum_probs=215.3
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999988666 6899999999999999998 89999999999999998888
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.......|+.+|+.+..+|.+ .||++++.|++..+.|++++......... .-.+++.+|+|||..+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 778888999999999998866 89999999999999999999887766553 337899999999999998875 8
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1132)
+.+++||+.++..+..|.+|.. +|..++|+.+|-+++++.+|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 8999999999999999999887 9999999999999999999999999999999988888877654 7999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 001176 644 LAVTTSDNGIKILAN 658 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~ 658 (1132)
|+.++.|=.|++++-
T Consensus 447 L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK 461 (506)
T ss_pred EEeecceeEEEEEec
Confidence 999987766666653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=224.58 Aligned_cols=505 Identities=14% Similarity=0.181 Sum_probs=312.6
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCc-EEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~-~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
-.||+|+++++... +..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+++
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 46899999988775 4569999999999887 68899999999999987764 4788999999999999999999988
Q ss_pred ecCCCCCeEEEEeecc------------CCccEEEEEecC--CeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 490 FEGHEAPVYSVCPHHK------------ESIQFIFSTAID--GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~------------~~~~~l~s~s~d--g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+..+- ++.++.+.|. .+-..+.+.+.+ ++++-+.+.+... ...+......-.++.+++.|.+..
T Consensus 98 ~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 98 FDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 86432 3333332111 111111111111 1111111111000 000011111135778888888777
Q ss_pred EEecCCCCCCeEEEEeCCCCcee---eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeeEEEEeCCCCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGGL 629 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~ 629 (1132)
.+. +..+++|+..++... +....++...+++.+++|+++++++|..||+|.+|.--. +.....-..|.|.
T Consensus 177 i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 177 IVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred EEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 664 445899998875411 112223333578999999999999999999999996433 2222222234445
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCC
Q 001176 630 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 709 (1132)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 709 (1132)
..|.+++|+++|.+|++|+.+|.+.+|.+.++++.+ +
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L----------------------------------------- 288 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L----------------------------------------- 288 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCCccc--c-----------------------------------------
Confidence 589999999999999999999999999998873111 1
Q ss_pred CCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc
Q 001176 710 PDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 789 (1132)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 789 (1132)
|. -.+.|..+.++||+...+....
T Consensus 289 ------------------------------------------------------PR--Lgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 289 ------------------------------------------------------PR--LGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ------------------------------------------------------cc--cCCeeEEEEEcCCCCeEEEEec
Confidence 00 1233455555555555444444
Q ss_pred cceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe
Q 001176 790 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 869 (1132)
Q Consensus 790 dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~ 869 (1132)
|+.|. +....+..
T Consensus 313 DNqI~-------------------------------------------------------------------li~~~dl~ 325 (792)
T KOG1963|consen 313 DNQIH-------------------------------------------------------------------LIKASDLE 325 (792)
T ss_pred CceEE-------------------------------------------------------------------EEeccchh
Confidence 44444 44443333
Q ss_pred EEEEeeC-----------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec-----c------ccCCeeEE
Q 001176 870 VMTMFMS-----------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----G------HQNRITGL 927 (1132)
Q Consensus 870 ~~~~~~~-----------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~------h~~~V~~l 927 (1132)
...++.+ ..+-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+. . +.-.++++
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav 404 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAV 404 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeee
Confidence 2222221 123357788888 67788888999999999998876554432 1 23357888
Q ss_pred EEcCCCCEEEEEc--------CC--CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCc-EEEE-EeCCeEE
Q 001176 928 AFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT-HLLV-VHESQIS 995 (1132)
Q Consensus 928 ~~spdg~~l~s~~--------~D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~-~~d~~v~ 995 (1132)
+.+..|.+++|.- .| -.+++|-.......-.........|.. ..+..+..++... .+++ +.||.++
T Consensus 405 ~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 405 ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccceeEEeccCCeEE
Confidence 8888899999864 23 358899876654322222222233321 2222333333333 5555 6899999
Q ss_pred EEeCCC-Ccee----ec---CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-cceecccCCCccccccccCCC
Q 001176 996 VYDSKL-ECSR----SW---SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSN 1066 (1132)
Q Consensus 996 vwd~~~-~~~~----~~---~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 1066 (1132)
+|-.+. ..+. .| ..+..|..++++++||.||..|+++ .|++|.+||..+ .+..+.+... ..|
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~-~~~------- 553 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSR-NWP------- 553 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhcccccc-ccc-------
Confidence 998721 1111 11 1123468999999999999877755 589999999998 4444443311 111
Q ss_pred CCCcEEEEeCCC-CCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1067 TAHPLVIAPHPS-EPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1067 ~~~v~~~~~~p~-~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
...+.+..+ .....+.....+.+.+|++.+..-.|..
T Consensus 554 ---~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 554 ---IAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred ---hHhHhhhcccccccceeeccCceEehHhhhhhheecch
Confidence 111222110 1123445567889999999999988843
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=230.09 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=224.2
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE-EE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IA 844 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~-~~ 844 (1132)
.+|...|..+++.+.. .+++++.||++++|+-...+ .+-...+.+ | .+-|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~~~--~-~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAFEG--P-KGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceeccc--C-cceeeccce
Confidence 4588888888876655 68999999999999632111 111111222 4 455555 77
Q ss_pred Eee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC
Q 001176 845 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922 (1132)
Q Consensus 845 ~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 922 (1132)
+.+ |+-.+++|+ |.+|.+|...+..++.++.+|...|.|+.... ++. +++|++|.++++|-. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 775 555688888 99999999999999999999999999999876 565 889999999999964 677778999999
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCC
Q 001176 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1002 (1132)
.|+++++-|++ .++|||.|.+|++|.-.+ .++.+.||. +-|+.+++-+++.++-+++||.|++|+++++
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 99999999988 899999999999998754 677888888 7899999999999999999999999999999
Q ss_pred ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCe
Q 001176 1003 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1082 (1132)
Q Consensus 1003 ~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 1082 (1132)
++... ++|..-|.++....++..++++++|++++||+.. ++...+..+ ...+.++.+-+ + .-
T Consensus 211 ~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-----------ttsiWsa~~L~-N-gD 272 (745)
T KOG0301|consen 211 VLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-----------TTSIWSAKVLL-N-GD 272 (745)
T ss_pred eeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-----------ccceEEEEEee-C-CC
Confidence 98876 6779999999999999999999999999999988 566666522 13455666655 3 35
Q ss_pred EEEEeCCCcEEEEecC
Q 001176 1083 IALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1083 l~s~~~Dg~i~vW~~~ 1098 (1132)
|++|++||.|+||-..
T Consensus 273 Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 273 IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEeccCceEEEEEec
Confidence 8889999999999887
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=202.82 Aligned_cols=291 Identities=13% Similarity=0.179 Sum_probs=219.2
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
.+|...|++++|+.||+.|++++.|+.|++|++..-. ...-+.++..+. -+..+.++|
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----------------~~eHr~~R~nve-----~dhpT~V~F 140 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----------------NKEHRCIRQNVE-----YDHPTRVVF 140 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----------------hhhhhHhhcccc-----CCCceEEEE
Confidence 4599999999999999999999999999999875310 111122222221 224688999
Q ss_pred eeCCCEEEEee--CCeEEEEECCCCe---EEE---------EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 846 SKNDSYVMSAS--GGKVSLFNMMTFK---VMT---------MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 846 s~dg~~la~~s--dg~i~vwd~~~~~---~~~---------~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
+||-+-+++.- ..++++|.+...+ ... .-+.|.-.|..+-... ++.+|++++.|..|.+|++. |
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C
Confidence 99999777765 6789999875322 111 1123555666677766 88999999999999999998 8
Q ss_pred eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC---CcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 912 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID---KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
+.+..+......-+..+.||+|+++++++.---|++|++- .|+.......-.+.||. ..|..++||++...+++
T Consensus 219 q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVT 295 (420)
T ss_pred ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEE
Confidence 8898888777777888999999999999999999999974 33322223344567887 78999999999999999
Q ss_pred -EeCCeEEEEeCCC--------Cceeec-CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccc
Q 001176 989 -VHESQISVYDSKL--------ECSRSW-SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058 (1132)
Q Consensus 989 -~~d~~v~vwd~~~--------~~~~~~-~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1058 (1132)
+.||++++||++- +.++.. .+.++-.+.--.+++||.|+.||.+. ...++++..++|+..-.+.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e----- 369 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE----- 369 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH-----
Confidence 7899999999822 222222 11222233344899999999998765 5789999999998876654
Q ss_pred cccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1059 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1059 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
..|+..+.+++|++ +|+++++++ |..+++..
T Consensus 370 -----~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 -----DIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -----HhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 36788999999999 889999886 77777766
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=218.59 Aligned_cols=265 Identities=15% Similarity=0.255 Sum_probs=215.0
Q ss_pred eEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 336 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 336 ~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
....+.|.++|+.+.+-|....++|+++..+.|.|||...-.-..... ....+...+.+|+..=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeeccccccccccc
Confidence 345566999999999999999999999999999999997643322100 01112234788998888899999
Q ss_pred CC-CeEEEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC--CCeEEE
Q 001176 416 DG-LMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQY 488 (1132)
Q Consensus 416 dg-~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~--~~~~~~ 488 (1132)
.. -.|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 54 4789999999999999986543 5556678899999999999998777 79999999999999999 566677
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEE-EEEecCCCCCCeE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHL 566 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i 566 (1132)
...+|.++|++++|+|.. +.+|||||.|++|++||+++... +..+.+|...|.++.|||....+ ++++ .|+++
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg----~D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG----TDRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc----cCCcE
Confidence 888999999999999986 48999999999999999998665 55889999999999999987654 4544 38899
Q ss_pred EEEeCCCC--------------ceeeeeccccCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCC
Q 001176 567 VEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDN 616 (1132)
Q Consensus 567 ~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~ 616 (1132)
.+||+..- +++....||.. .|..+.|+|+..+++ ++++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999642 23355567776 799999999987655 578999999999863
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=220.96 Aligned_cols=293 Identities=14% Similarity=0.209 Sum_probs=235.9
Q ss_pred ceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 335 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+.+.+|.|..-|.++.+|...+ .+.||+ .|.|+|||+....... +...--.-....-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 4577888999999999999998 488988 4899999997642211 11110122346689999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 494 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 494 (1132)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.++|..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 12223333334677899999999 88899999999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
+.+.||.++. +|..|.||+.|++||.||++.+..+.... -...|.++.++|++.+++.+-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999865 55899999999999999999877765433 2457899999999999999975 5557666644 3
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
.....+..|.. .|.++.|.+.|+++++.|.|+.+..|...-|..+...+. ...|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 33444555555 799999999999999999999999999988887776654 34799999999999999999999888
Q ss_pred EEEc
Q 001176 655 ILAN 658 (1132)
Q Consensus 655 iw~~ 658 (1132)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8864
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=216.95 Aligned_cols=283 Identities=12% Similarity=0.156 Sum_probs=229.1
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
|..-|..++++...+++.+++. |.|+|||+..... ..++ ..+..... ...|+++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~Pv-sqLdcl~r-dnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPV-SQLDCLNR-DNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCcc-ccccccCc-ccceeeeEecC
Confidence 7778888899999998888765 6899999864211 0000 01111112 67899999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 924 (1132)
||+.|++|+ -.++.|||+..... ...+........+++.+| |.++.+++..||.|.|||+.+...++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999 68899999976543 334444445678899999 89999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
.||.+++||..|-|||-|++||-||+.++..+.+.-.. ..|.++..+|.+.||+++ .++.+.|...++..
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---------SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---------hhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 99999999999999999999999999998754332111 467889999999999997 56788888874443
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
--.+ +-|.+.|.++.|++-|+++++.+.|+-+-.|...-|..+.+.. .+..|++|..+. |+++|
T Consensus 626 kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------------E~SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 626 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------ESSSVLSCDISF-DDKYI 689 (705)
T ss_pred ceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------------ccCcceeeeecc-CceEE
Confidence 3332 4468999999999999999999999999999999998876653 347889999998 77999
Q ss_pred EEEeCCCcEEEEecC
Q 001176 1084 ALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~ 1098 (1132)
+||+.|....||.+.
T Consensus 690 VTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 690 VTGSGDKKATVYEVI 704 (705)
T ss_pred EecCCCcceEEEEEe
Confidence 999999999998763
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=195.11 Aligned_cols=300 Identities=16% Similarity=0.222 Sum_probs=228.6
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
|.+.|+++...+...+++.+|+.||.|.|||++.........+ +-+ ..|. +...--.+|+-.|..+.|-| |.-.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCcee
Confidence 8899999999996555899999999999999986542211000 000 0010 11112467999999999999 67788
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCC-cEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
.+++.|.+++|||.++-+... .+ .-.+.|.+-+++|-.. ..++++|..|-.|++.|+.+|...+++.||.+.|.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 899999999999999866543 22 2456788888888654 447889999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCC-CceEE--------------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVD--------------YDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
+.|+|..+ -.|++|+.||.|++||++.. ++... -..|.+.+..++|+.++.++++++. +.
T Consensus 194 V~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~ 268 (397)
T KOG4283|consen 194 VEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DD 268 (397)
T ss_pred EEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----cc
Confidence 99999865 78899999999999999764 33332 2345668999999999999999986 77
Q ss_pred eEEEEeCCCCceeeeecc---ccC---CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 565 HLVEWNESEGAIKRTYSG---FRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
++++|+..+|+-...-.+ |.+ ..+. +. +.+...++.--.++.+.++++-++..+..+..|. ..+.+.++.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~~ 344 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAYR 344 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEeec
Confidence 899999988763221111 111 0122 22 3344455555567999999999999999999884 489999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 001176 639 KEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~ 658 (1132)
|+-+...+|..|+.+..|-.
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999975
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=196.48 Aligned_cols=251 Identities=18% Similarity=0.267 Sum_probs=202.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 419 (1132)
|.+-|-.+...--|+ .|||++.|++|+|+.+..+.... ....+.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 888888888888898 59999999999999998765421 1123789999999999987 7999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-e--EEEEecCCCCC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 496 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~--~~~~~~~h~~~ 496 (1132)
||+++.||.|.||.-.++ ......+...|...|++++|.|.+-.+.|+.++.||.|.|.+..+. . ..+....|...
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999998887 4444556778999999999999988889999999999999987754 2 12345679999
Q ss_pred eEEEEeeccCC-c-----------cEEEEEecCCeEEEEEcCCCCce--EEecCCCCeEEEEEEcCCC----CEEEEEec
Q 001176 497 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 558 (1132)
Q Consensus 497 v~~i~~~~~~~-~-----------~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 558 (1132)
|++++|.|..- | ..|++|+.|+.|++|+.++..-. ..+..|...|+.++|.|.- .+|++|+.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988622 1 56999999999999999886432 2578899999999999964 46888874
Q ss_pred CCCCCCeEEEEeCCCC--ceeee-eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 559 SKEGESHLVEWNESEG--AIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
|+++.||-.+.. ....+ ++.... .+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 888999976521 11112 222222 78999999999999999999999999754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-23 Score=211.11 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=193.7
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~- 482 (1132)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 35689999999999999999999999999999999876 5789999999999999999 89999999999999763
Q ss_pred --------CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 483 --------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 483 --------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+-++++.|..|.-+|+++...+.+...+++|+|.|.++++||+..+..+..+. ....+.+++..|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 34677899999999999999887666899999999999999999887766655 456789999999999999
Q ss_pred EEecCCCCCCeEEEEeCCC----------------CceeeeeccccC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 555 SCGTSKEGESHLVEWNESE----------------GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
+|+. +|.|.+.++.. +..+..+.||.. ..|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 234 iGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9875 77788777642 234556777765 57999999999999999999999999999999
Q ss_pred eeEEEEeCCCCCCCcceEEEcCC
Q 001176 618 NMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
+++.++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888743 347888888763
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=210.49 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=203.9
Q ss_pred CCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCCce-------eeeeeeecccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 402 NDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 402 ~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~~~-------~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
..|.+.|+.+.+-|. ...+|+.+..+.|.|||..+.... .....|.+|.+.-.+++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 349999999999995 556777888999999998764322 223368899998888999998776 79999999
Q ss_pred CcEEEEECCCCe-------EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCeEEEE
Q 001176 474 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 474 g~v~vwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~ 544 (1132)
++|++||+.... +...+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|.+.|.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997543 2456889999999999998755 799999999999999999 555666788899999999
Q ss_pred EEcCCCCE-EEEEecCCCCCCeEEEEeCCCC-ceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeE-
Q 001176 545 AYSADGTR-LFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 620 (1132)
Q Consensus 545 ~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~- 620 (1132)
+|+|-+.+ ||+++. |++|.+||++.. +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99996655 555554 888999999874 57889999988 89999999987 56677889999999998752222
Q ss_pred -----------EEEeCCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q 001176 621 -----------TTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 621 -----------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~ 660 (1132)
..+...+|...|..+.|+|+. -.+++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 123344556789999999955 4677889999999998753
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=207.49 Aligned_cols=305 Identities=16% Similarity=0.198 Sum_probs=226.9
Q ss_pred EEEcCCC-cEEEEECCCCeEEEEecCC-CCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 468 VTCGDDK-MIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 468 ~s~~~dg-~v~vwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
.+++.|. .+.+||+++|....++++- ...-.++... +..+++++. .-..+.+|.+...........-.+++.++
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 3444454 5999999999999888865 2222222211 114555554 45578999887665555455567789999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--------
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------- 616 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 616 (1132)
+-+|+|.+|+.++. .+.|++|.+.+|.++..+..|.+ .|+|+.|+.||.+|++||.||.|.+|.+.+
T Consensus 88 ~s~n~G~~l~ag~i----~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTI----SGNLYLWELSSGILLNVLSAHYQ-SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred ecCCCceEEEeecc----cCcEEEEEeccccHHHHHHhhcc-ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence 99999999998865 56699999999999999999988 999999999999999999999999998632
Q ss_pred -CeeEEEEeCCCCCCCcceEEEcCC--CCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccccc
Q 001176 617 -MNMLTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 693 (1132)
Q Consensus 617 -~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1132)
-+++..+..| .-+|+.+...+. ..+|++++.|.++++||+..+ .++..+.
T Consensus 163 ~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~------------------------ 215 (476)
T KOG0646|consen 163 SVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT------------------------ 215 (476)
T ss_pred CccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe------------------------
Confidence 3345555544 447888887764 458999999999999999887 3332211
Q ss_pred CCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceE
Q 001176 694 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 773 (1132)
Q Consensus 694 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 773 (1132)
....+.
T Consensus 216 --------------------------------------------------------------------------fp~si~ 221 (476)
T KOG0646|consen 216 --------------------------------------------------------------------------FPSSIK 221 (476)
T ss_pred --------------------------------------------------------------------------cCCcce
Confidence 123577
Q ss_pred EEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEE
Q 001176 774 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 853 (1132)
Q Consensus 774 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la 853 (1132)
++++.|.++.+.+|+.+|.|.+.++.. +.+ . +..|.
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~-----------------------------~~~--~-~~~v~------------ 257 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFK-----------------------------LSG--Q-SAGVN------------ 257 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhc-----------------------------CCc--c-ccccc------------
Confidence 888899899899999999888765421 000 0 11111
Q ss_pred EeeCCeEEEEECCCCeEEEEeeCCCC--CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcC
Q 001176 854 SASGGKVSLFNMMTFKVMTMFMSPPP--AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931 (1132)
Q Consensus 854 ~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 931 (1132)
.+.++. .+..+..+.+|.+ .|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|
T Consensus 258 ------~k~~~~-~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 258 ------QKGRHE-ENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred ------cccccc-ccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 112221 2455677888887 899999999 999999999999999999999999999987888999999966
Q ss_pred CC
Q 001176 932 TL 933 (1132)
Q Consensus 932 dg 933 (1132)
-.
T Consensus 330 ~~ 331 (476)
T KOG0646|consen 330 LE 331 (476)
T ss_pred cc
Confidence 43
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=205.97 Aligned_cols=289 Identities=13% Similarity=0.222 Sum_probs=230.4
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCeEEEEe
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd 570 (1132)
.+.|+++.|+|.. .++++++.||++++|.++.... +..+.....+|.+.+|.|+|. .+++++. ...++.||
T Consensus 213 ~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEee
Confidence 4789999999977 8999999999999998876543 445666677999999999999 6777664 67799999
Q ss_pred CCCCcee--eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 571 ESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 571 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
+.+.+.. ....++....+.....++++++++..|..|.|.+....+++.+..++..+ .|..++|+.|++.|++++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEEc
Confidence 9987643 34455555568888999999999999999999999999999999998764 589999999999999999
Q ss_pred CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcc
Q 001176 649 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 728 (1132)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1132)
.+|.|.+||+... .+.+.+....
T Consensus 364 ~~GeV~v~nl~~~-~~~~rf~D~G-------------------------------------------------------- 386 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN-SCLHRFVDDG-------------------------------------------------------- 386 (514)
T ss_pred CCceEEEEecCCc-ceEEEEeecC--------------------------------------------------------
Confidence 9999999999877 4444433210
Q ss_pred cccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCc
Q 001176 729 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 808 (1132)
Q Consensus 729 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 808 (1132)
.-.-++++.+++|.++++|+..|.|.|||.+.--..
T Consensus 387 ----------------------------------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s---- 422 (514)
T KOG2055|consen 387 ----------------------------------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS---- 422 (514)
T ss_pred ----------------------------------------ccceeeeeecCCCceEEeccCcceEEEeccchhhcc----
Confidence 011257888899999999999999999986531111
Q ss_pred cccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCC---CCeE
Q 001176 809 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP---PAAT 882 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~---~~i~ 882 (1132)
...+++.....- ...|+++.|++|++.||.++ ...+++--+.+......+.... +.|+
T Consensus 423 ------------~~PkPik~~dNL----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 423 ------------TNPKPIKTVDNL----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred ------------CCCCchhhhhhh----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 111122211222 56799999999999999998 4779999999888877776543 5689
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcc
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~ 909 (1132)
|++||| .+.++|.|..+|.|.+|.+.
T Consensus 487 c~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecC-CCceEEeecCCCceeeEeec
Confidence 999999 89999999999999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=193.11 Aligned_cols=297 Identities=12% Similarity=0.181 Sum_probs=223.6
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
.|.++..+|++.. -.|+.||+.|. +||+|..||.|.|||+.+...-. ++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 4556677787665 89999999998 79999999999999999866432 378899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+||+||+.|++++.|..|.+||+..|..++.. ....+|+.+.|.|-..+..+++- .+..-.+-++..++.. .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999877643 24679999999998776444443 3444555555543221 111
Q ss_pred C-CCCCeEEE--EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 492 G-HEAPVYSV--CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 492 ~-h~~~v~~i--~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
. ..+..... +-..+..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |+.|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 1 11111111 11134456999999999999999999998888777666 78999999999999999875 88899
Q ss_pred EEeCCC-------Cce--eeeeccc-cCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 568 EWNESE-------GAI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 568 ~wd~~~-------~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
.|+++. +++ .+.++.- ....-.+++|+.+|.++++++ .-..++||....|.++..+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 999862 111 1222110 111456789999999998876 5567999999999999999877643 567889
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988888777 7889999987543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=205.49 Aligned_cols=288 Identities=12% Similarity=0.205 Sum_probs=234.0
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC-eEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la 421 (1132)
.++|++|.|+|... +|.+++.|++++||.+.........+ +.-...+|.+..|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 47899999999998 79999999999999997543211111 122456899999999999 899
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
+++.....+.||+.+.+..+ ...+.++. ..+.....+++++ +|+..|..|.|.+-...+++.+.+++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876543 22344554 3577888999999 89999999999999999999998886 67889999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC------
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 573 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 573 (1132)
+|+. ++..|++.+.+|.|.+||++...++..+...++ .-++++.|++|.+|++|+. .|.|.|||.++
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 558999999999999999999988887766554 5578899999999999974 78899999653
Q ss_pred CceeeeeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEcCCCCEEEEEeCC
Q 001176 574 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.+++.++..-.. .|+++.|+++.+.|+.++ .+..+++-.+.+.....-++.. ...+.|+|++|+|.+.+||.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 356666665555 799999999999988877 5678999998887766655433 234578999999999999999999
Q ss_pred CcEEEEEcC
Q 001176 651 NGIKILANS 659 (1132)
Q Consensus 651 g~i~iw~~~ 659 (1132)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999763
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=216.89 Aligned_cols=281 Identities=19% Similarity=0.203 Sum_probs=212.5
Q ss_pred ccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 767 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 767 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
.|....+.++|.++|..|++++.||.|++|+.....- ....+. . + ...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~P~ti~--~----~-g~~v~~ia~- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------EPETID--I----S-GELVSSIAC- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------CCchhh--c----c-CceeEEEee-
Confidence 3777789999999999999999999999997643211 000000 0 2 445655554
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|.++|.|+.|-.|++-++.+......+++|.++|.
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCcee
Confidence 556888888 89999999998877656666678899999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC-cEEEEEeCCeEEEEeC-CCCc
Q 001176 926 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVVHESQISVYDS-KLEC 1003 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~d~~v~vwd~-~~~~ 1003 (1132)
+|.|+|.+.+||+.+.||.|++|+++++.......................++|+|+| ++++.+.|+.|.+|+. ....
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999999999999999999999999987754432111111100001456788999995 5555589999999999 4444
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
...+.... +...+..+.|||+|+|||+++.||.|.|||.++-.. . --...|.+++|.| +.+-|
T Consensus 223 ~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~--------------~~~~~Vc~~aw~p-~~n~i 285 (933)
T KOG1274|consen 223 QFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H--------------EFKRAVCCEAWKP-NANAI 285 (933)
T ss_pred heeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c--------------cccceeEEEecCC-CCCee
Confidence 44444433 345599999999999999999999999999998322 1 2236788999999 44444
Q ss_pred EEEeCCCcE
Q 001176 1084 ALGMSDGAV 1092 (1132)
Q Consensus 1084 ~s~~~Dg~i 1092 (1132)
-.-..-|..
T Consensus 286 t~~~~~g~~ 294 (933)
T KOG1274|consen 286 TLITALGTL 294 (933)
T ss_pred EEEeecccc
Confidence 433334433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-20 Score=205.74 Aligned_cols=292 Identities=13% Similarity=0.139 Sum_probs=216.1
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++ ..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999888876654 6778887754 554 677889999999999877665554433 35678
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeeEEEE
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 623 (1132)
+|+|+++.+++++. .++.+++||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988877776432 467799999999999887664 5778899888776655
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccccc
Q 001176 624 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 702 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 702 (1132)
.... ....++|++++++|++++ .++.|++||+.++ +....+..+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~------------------------------- 198 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE------------------------------- 198 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec-------------------------------
Confidence 4322 457899999999886554 5899999999876 222211100
Q ss_pred ccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCc
Q 001176 703 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 782 (1132)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 782 (1132)
..+.
T Consensus 199 ----------------------------------------------------------------------------~~~~ 202 (300)
T TIGR03866 199 ----------------------------------------------------------------------------IPGV 202 (300)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred eEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe--eCCeE
Q 001176 783 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--SGGKV 860 (1132)
Q Consensus 783 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~--sdg~i 860 (1132)
.. . ......++|+||+++++++ +++.+
T Consensus 203 -----------------------------------------------~~---~-~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HP---E-AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------cc---c-cCCccceEECCCCCEEEEEcCCCCeE
Confidence 00 0 1123357788999876554 36789
Q ss_pred EEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEEcccceeeeeeccccCCeeEEEEcC
Q 001176 861 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931 (1132)
Q Consensus 861 ~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 931 (1132)
.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++.++... ...+.++++|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888776654 445789999999 88888776 56899999999999999988754 5568888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=201.38 Aligned_cols=300 Identities=15% Similarity=0.217 Sum_probs=226.4
Q ss_pred eEEeec-CCCCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
...... +..+|++++|+|... .++|+|...|+|-+||+.+.+...... .++..|.++|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEe
Confidence 334444 778999999999765 799999999999999997544332211 126789999999999
Q ss_pred cC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEec
Q 001176 414 GP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFE 491 (1132)
Q Consensus 414 sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~ 491 (1132)
+| +-..+.+.+.||+|+.-|++++.. .....+......+..+.|+.+.. .++.+..=|.+.+||++++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 99 556889999999999999998642 22223333455678889998888 677787778999999998765 55667
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
-|...|.+++++|..+ .+++|+|.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+
T Consensus 320 lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 7999999999999866 79999999999999999875443 345568889999999998877887764 77899
Q ss_pred EEeCC----CCceeeeeccccCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcce-EEEc
Q 001176 568 EWNES----EGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFN 638 (1132)
Q Consensus 568 ~wd~~----~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s 638 (1132)
+||.. .-.+..++...... ......|.|+..++++|-.-..|-|+|-..++.+..+..+... .|.+ ..|+
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~H 473 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFH 473 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeec
Confidence 99983 23333333221110 2344789999999999998889999999999988876554332 3443 5799
Q ss_pred CCCC-EEEEEeCCCcEEEEEcC
Q 001176 639 KEGS-LLAVTTSDNGIKILANS 659 (1132)
Q Consensus 639 ~~~~-~l~~~~~dg~i~iw~~~ 659 (1132)
|-+. +++-++..|.|++|.-.
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 9777 44445557888888643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=201.69 Aligned_cols=472 Identities=13% Similarity=0.166 Sum_probs=310.6
Q ss_pred EEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCc-cEEEEEecCCeEEEEEcCCCCceE
Q 001176 454 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 532 (1132)
Q Consensus 454 ~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~ 532 (1132)
..-.|++|++. ++.+ .+..|.||...+|.++..+.+|..++.++.+.|.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k~--l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAKF--LFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCcE--EEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 34578999983 4433 3569999999999999999999999999999887754 678899999999999999888877
Q ss_pred EecCCCCeEEEEEEcC---CCCEEEEEec---------CCCCCCeEEEEeCCCC--ceeeeeccccCCceEEEEEeCCCC
Q 001176 533 DYDAPGNWCTMMAYSA---DGTRLFSCGT---------SKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 533 ~~~~~~~~v~~~~~s~---~~~~l~~~~~---------~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1132)
.+..+.. +..+.+.| +-...+..+. ..+-.++++-+.+.+. ........+. .-.++.+++.|.
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCce
Confidence 7665443 22222222 1111111110 0011111222222110 0111111111 134577888776
Q ss_pred EEEEEEcCCeEEEEECCCCeeEEEE-e-CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccc
Q 001176 599 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 676 (1132)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1132)
+.+.. .+..+.+|+..+....... . ...|.-.+++.+++|+++++++|..||.|.+|.--.. .
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~----------~---- 238 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS----------S---- 238 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc----------c----
Confidence 65555 4667899998875511111 1 1112224789999999999999999999999963210 0
Q ss_pred cCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCC
Q 001176 677 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756 (1132)
Q Consensus 677 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 756 (1132)
T Consensus 239 -------------------------------------------------------------------------------- 238 (792)
T KOG1963|consen 239 -------------------------------------------------------------------------------- 238 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCC
Q 001176 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836 (1132)
Q Consensus 757 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~ 836 (1132)
..+-+.++|.+ |
T Consensus 239 -------------------------------~~~~t~t~lHW------------------------------------H- 250 (792)
T KOG1963|consen 239 -------------------------------DDSETCTLLHW------------------------------------H- 250 (792)
T ss_pred -------------------------------cccccceEEEe------------------------------------c-
Confidence 00001122221 5
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
..+|.+++|++||.+|.+|+ .+.+.+|.+.+++ ..-++.-.+.|..+.+|| ++.+.+....|..|.+-...+.+...
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhh
Confidence 77899999999999999999 7889999999988 455666778899999999 89999999999999999887655444
Q ss_pred eecc-----------ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC---CCCCceeEEECC
Q 001176 916 KLKG-----------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS---PLVGETKVQFHN 981 (1132)
Q Consensus 916 ~l~~-----------h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~ 981 (1132)
++.+ ..+-.+.++++|.-+.++-.+..|.|.+||+-+.+.+....+...+.+.. ....++.++.+.
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 4332 23446788999988889999999999999998876654433322222211 124678888899
Q ss_pred CCcEEEEEe---------CC--eEEEEeCCCC---ceeecCCCCCCCCCeEEEEEccC-CC-EEEEEecCCcEEEEeCCC
Q 001176 982 DQTHLLVVH---------ES--QISVYDSKLE---CSRSWSPKDALPAPISSAIYSCD-GL-LVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 982 dg~~l~~~~---------d~--~v~vwd~~~~---~~~~~~~~~~h~~~i~~i~~s~d-g~-~las~~~dg~i~vwd~~~ 1045 (1132)
.|.++++.. || .+++|-...+ ....-.....|...+.+.+|.+. .. ..++++.||.++||-+.+
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 999999842 22 4778876222 11111223455666666666543 22 789999999999999966
Q ss_pred cceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1046 LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.+.+..... .+....+.+=|...+.+++|+. || .+++.+.|++|.+||..+
T Consensus 489 ~~n~~k~~s-~W~c~~i~sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 489 DSNIYKKSS-NWTCKAIGSYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccccCcCcc-ceEEeeeeccccCcccchhhcC-CC-cEEEEecCCEEEEecCCC
Confidence 555433221 1111111223567788899997 66 666677899999999988
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=188.29 Aligned_cols=270 Identities=12% Similarity=0.140 Sum_probs=204.4
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
....|.++.|+|.+..|++++.||.+++|++..... ...+ .| ..++.+++|.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------------------~~~~---~~-~~plL~c~F~d 64 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------------------KLKF---KH-GAPLLDCAFAD 64 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------------------hhhe---ec-CCceeeeeccC
Confidence 457899999999999999999999999998754211 0011 25 88999999987
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
+ ..+++|+ ||.|+.+|+.+++. ..+..|...|+||.+++ ....+++|++|++|++||.........+. ....|.+
T Consensus 65 ~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~ 140 (323)
T KOG1036|consen 65 E-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYC 140 (323)
T ss_pred C-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEE
Confidence 5 4556666 99999999998766 44556999999999999 77888999999999999998755555554 3347888
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCC---
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLE--- 1002 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~--- 1002 (1132)
+.. .|..|+.|+.|..|.+||+.+.+...+..-..+ ...+.++++-|++.=.++ +-||.|.+=..+..
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l------kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL------KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccc------eeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 876 477899999999999999998654322111111 156889999997665555 67999887665221
Q ss_pred --------ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEE
Q 001176 1003 --------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1074 (1132)
Q Consensus 1003 --------~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1074 (1132)
|.+.........-+|++|+|+|-...||||+.||.|.+||+.+.+.++++. .-...+..++
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-----------~~~~SI~sls 281 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-----------KYETSISSLS 281 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-----------CCCCceEEEE
Confidence 222221111123479999999999999999999999999999999888774 3345678899
Q ss_pred eCCCCCCeEEEEeC
Q 001176 1075 PHPSEPNQIALGMS 1088 (1132)
Q Consensus 1075 ~~p~~~~~l~s~~~ 1088 (1132)
|+. +|..||.|+.
T Consensus 282 fs~-dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSM-DGSLLAIASS 294 (323)
T ss_pred ecc-CCCeEEEEec
Confidence 998 8889998863
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=225.94 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=213.9
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588899999987788999999999999999988765544 5889999999999999988 8999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
+.++.++++.+|...+.++.|+|.. .+.++|+.|+.+++||.+..++...+.+|...+..+.|+|+|++++.++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999876 88999999999999999999999999999999999999999999999874
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
|..+++||...|+....|.+|.. .+.++.|+|..-.+..||.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78899999999999999999887 8888999998888888999999999999998888877655 4589999999999
Q ss_pred CEEEEEeCC
Q 001176 642 SLLAVTTSD 650 (1132)
Q Consensus 642 ~~l~~~~~d 650 (1132)
..+++|..+
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 998887654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-22 Score=209.37 Aligned_cols=290 Identities=14% Similarity=0.146 Sum_probs=210.6
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCe
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 859 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~ 859 (1132)
.+.|+.+..+|.|.++|.....+.++.. ++. .. ..| ...|..+.|.|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~---------------~lk--~~--~aH-~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEER---------------QLK--KP--LAH-KNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhh---------------hhc--cc--ccc-cceeEeeccCCCceeEEEccCCce
Confidence 3456778889999999876543321111 000 01 127 88999999999667788887 899
Q ss_pred EEEEECCCCeEEEE--eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-------------------------
Q 001176 860 VSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------------------- 912 (1132)
Q Consensus 860 i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------------------------- 912 (1132)
+++||+.+.++... +.+|.+.|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999986311
Q ss_pred --eeeeeccccCCeeE---EEEcCCCCEEEEEcC-CCcEEEEECCCcccccce---eeeCCCCCCCCCCCceeEEECCCC
Q 001176 913 --VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSR---FIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 913 --~~~~l~~h~~~V~~---l~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
.+....+|...|.+ +.+..|...|||+|. |+.|++||+......... .......+......+.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 11122345555555 556678999999987 999999999875432211 111222222223567788888888
Q ss_pred cEEEE-EeCCeEEEEeCCCCceeecCCCCCC---CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccc
Q 001176 984 THLLV-VHESQISVYDSKLECSRSWSPKDAL---PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP 1059 (1132)
Q Consensus 984 ~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h---~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1059 (1132)
.+|++ +.|+.|++|++....+.......++ ...+. -..|||+.+|++|+.|..+++|.+.+.+. +
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~----------~ 352 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEA----------P 352 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccC----------C
Confidence 99888 7899999999933322221111111 11222 34689999999999999999999998654 2
Q ss_pred ccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1060 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1060 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+.-+|...|++++|.|..-.-+++++.|.++++|++..+-
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 233459999999999999877788889999999999997765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=190.40 Aligned_cols=253 Identities=13% Similarity=0.233 Sum_probs=194.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976443 5789999999999999999 8999999999999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----eEEEEEEcCCCCEEEEEecCCCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
+.++ ...+|+...|+|......+++- .+..-.+-++..+.....-....+ .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 6789999999998765444443 333345555554322221111111 2233468899999999964 8
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------eeE--EEEeCCCCCCCcce
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 634 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 634 (1132)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|+.||.|++..- ++. +.+.---....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999998888766447999999999999999999999999998631 111 11110001113357
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCcceeeeeccccc
Q 001176 635 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 672 (1132)
Q Consensus 635 ~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 672 (1132)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999987765 567999999888 7888877654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-21 Score=202.02 Aligned_cols=273 Identities=12% Similarity=0.145 Sum_probs=203.9
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
.|..++|-|||..+++.+ +..+.|||...|..+.+ +++|++.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 789999999998766655 46899999999998875 889999999999999999999999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 504 (1132)
.|..|.+|+-.-...++ ..|.+.|.|+.|+|-.. .++||+-. ..-+|........ .. .....|.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hh-hhheeEEEeee--
Confidence 99999999976544333 36999999999999988 78888743 5678986544322 11 12345666666
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCeEEEEEEcCCCC-----EEEEEecCCCCCCeEEEEeCCCCce
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
..||++++.|-.+|+|.+-+-.. ++...+. +...+|.+++|+|... .+++.-. ..++.++.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-cee
Confidence 55779999999999999875443 3333333 3456999999999642 3333321 3345555543 333
Q ss_pred eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
+..-..-.- ...|+.+.++|.+++.||.|+.+.+|.. .|-.+.++.... ..|+.++..|+++.++.|+.||+|-.|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehh
Confidence 332221111 4567899999999999999999999964 455666665433 379999999999999999999999999
Q ss_pred EcCC
Q 001176 657 ANSD 660 (1132)
Q Consensus 657 ~~~~ 660 (1132)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=205.31 Aligned_cols=276 Identities=10% Similarity=0.068 Sum_probs=204.2
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE-EEEeCCCeEEEEEecC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~~ 436 (1132)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999998875542 2233 346789999999976 5667889999999998
Q ss_pred CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec
Q 001176 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 516 (1132)
Q Consensus 437 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~ 516 (1132)
++... .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76544 333333 3567899999983 345556789999999999888877753 3346788887744 78888877
Q ss_pred CC-eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC------CceE
Q 001176 517 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 589 (1132)
Q Consensus 517 dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 589 (1132)
++ .+.+||..+........ ......+++|+|+++++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987765544333 2334578999999998876542 367899999999987776543211 0234
Q ss_pred EEEEeCCCCEEEEE-EcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCcceeeee
Q 001176 590 VVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 667 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 667 (1132)
.++|+|++++++++ +.++.+.+||..+++.+..+... ..+.+++|+|+|++|+++ ..+|.|.+||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 58899999986554 46778999999998877665422 268899999999999886 45899999999988 55554
Q ss_pred cc
Q 001176 668 LE 669 (1132)
Q Consensus 668 ~~ 669 (1132)
++
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 44
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=202.90 Aligned_cols=317 Identities=16% Similarity=0.231 Sum_probs=230.4
Q ss_pred eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEE
Q 001176 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523 (1132)
Q Consensus 444 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~w 523 (1132)
..+.||++.|.++...|.|. .|++|+.||+|+||.+.+|++++++. ..+.|.+|+|+|.++...|+++-.+. +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 45789999999999999999 89999999999999999999999886 55689999999998865555555444 5555
Q ss_pred EcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCCCE
Q 001176 524 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 524 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1132)
+..-+..+... +....|+++-.....+..+..|.-.... -++..-.|.. .|..+.|+..|.|
T Consensus 470 np~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCce
Confidence 44333211110 1112222221111235567788755221 1223333444 7999999999999
Q ss_pred EEEEE---cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccc
Q 001176 600 FLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 676 (1132)
Q Consensus 600 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1132)
|++.. ....|.|.++........+.... +.|.++.|+|...+|++++. ..|++||+... .+++.+
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL-------- 603 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKL-------- 603 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHH--------
Confidence 99965 45678999988776665554333 36899999998888888765 48999988654 222221
Q ss_pred cCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCC
Q 001176 677 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756 (1132)
Q Consensus 677 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 756 (1132)
T Consensus 604 -------------------------------------------------------------------------------- 603 (733)
T KOG0650|consen 604 -------------------------------------------------------------------------------- 603 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCC
Q 001176 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836 (1132)
Q Consensus 757 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~ 836 (1132)
+.+
T Consensus 604 -------------------------------------------------------------------------~tg---- 606 (733)
T KOG0650|consen 604 -------------------------------------------------------------------------LTG---- 606 (733)
T ss_pred -------------------------------------------------------------------------hcC----
Confidence 111
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCC-CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc-----
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR----- 909 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~----- 909 (1132)
...|..++++|.|.-|+.++ |+.+..||++- .++.++++.|...+++++|++ .-.++++|+.||++.|+.-.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhh
Confidence 33466677777777777777 88888888864 467788899999999999999 88899999999999998532
Q ss_pred -cc---eeeeeeccccCC----eeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 910 -VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 910 -~~---~~~~~l~~h~~~----V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
.. -.+..+.+|... |....|+|...+|+|+|.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 22 245678888766 8899999999999999999999998
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=183.70 Aligned_cols=302 Identities=15% Similarity=0.201 Sum_probs=220.4
Q ss_pred ccccceEEEEEec-CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 767 IAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 767 ~~~~~i~~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
.|.+.|.++.+.+ .|+++++|+.||.+.+||++..........+.. ....+.. .....| ...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---------~~c~v~~-~h~~~H-ky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---------HKCIVAK-QHENGH-KYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---------eeeeccc-cCCccc-eeeeeeeEE
Confidence 4788999999987 589999999999999999975321111111100 0001111 122237 889999999
Q ss_pred ee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEEcccceeeeeecccc
Q 001176 846 SK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD--NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921 (1132)
Q Consensus 846 s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~--~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 921 (1132)
-| |...+.+++ |.+++|||..+.+....|+ -.+.|.+-++||-. .-++|+|..|-.|++-|+.+|...+.+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 88 666777777 9999999999998888877 45678888888732 3478889999999999999999999999999
Q ss_pred CCeeEEEEcCCCCE-EEEEcCCCcEEEEECCCcc-c---------ccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-E
Q 001176 922 NRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWE-K---------LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V 989 (1132)
Q Consensus 922 ~~V~~l~~spdg~~-l~s~~~D~~i~iwd~~~~~-~---------~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~ 989 (1132)
+.|.++.|+|...+ |+||+.||.|++||+..-. + .....++....|. ..+..++|+.||.++++ +
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCG 265 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhcc
Confidence 99999999998765 7899999999999997531 1 0111112122222 67889999999999999 7
Q ss_pred eCCeEEEEeC-CCCce-eecCCCCCCCCC---eEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccC
Q 001176 990 HESQISVYDS-KLECS-RSWSPKDALPAP---ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1064 (1132)
Q Consensus 990 ~d~~v~vwd~-~~~~~-~~~~~~~~h~~~---i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1064 (1132)
.|..+++|+. ++... +.+.+ ..|... -.-+. +-+...++.--.|+.+.++++-+|..+..+.
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~----------- 332 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGP-IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS----------- 332 (397)
T ss_pred CccceEEeecccCccccccccc-ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-----------
Confidence 8999999999 44322 22211 111111 11122 3444455555567999999999999998886
Q ss_pred CCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1065 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1065 ~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
.|...+.+.+|.| +-....+|..|+.|..|-.
T Consensus 333 ~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 THLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceeeEEeecC-chhhhhccccCCccccccc
Confidence 6667888899988 7788999999999999987
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=182.52 Aligned_cols=259 Identities=13% Similarity=0.166 Sum_probs=194.2
Q ss_pred CCCCCeeEEEEeeCCCEEEEee-CCeEEEEECC----CCeEEEEeeCCCCCeEEEEEeC-CCCCeEEEEeCCCcEEEEEc
Q 001176 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFHP-QDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 835 h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~sp-~~~~~lasg~~dg~v~iwd~ 908 (1132)
| ..-|.++.|.+-|+.+|+++ |++|+|||.. +..+....+.|.+.|..+.|.+ .-|+.+|+++.|+++.||.=
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 6 78899999999999999999 9999999964 3567778899999999999964 45899999999999999975
Q ss_pred cc---------ceeeeeeccccCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccceeee-------CCCCCCCC
Q 001176 909 RV---------DEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQ-------APAGRQSP 970 (1132)
Q Consensus 909 ~~---------~~~~~~l~~h~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~ 970 (1132)
.. .....++....+.|+.+.|.|. |-.||+++.||.+|||+.-..-.+....++ .+.+. .
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~--~ 168 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK--N 168 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc--c
Confidence 21 2244556777888999999985 678999999999999987654332222211 11111 1
Q ss_pred CCCceeEEECCC---CcEEEEEeCC------eEEEEeC--CCCceeecCCCCCCCCCeEEEEEccC-C---CEEEEEecC
Q 001176 971 LVGETKVQFHND---QTHLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCD-G---LLVYAGFCD 1035 (1132)
Q Consensus 971 ~~~v~~~~~s~d---g~~l~~~~d~------~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~d-g---~~las~~~d 1035 (1132)
...-.++.|.|. ..+++++.+. .+.+|.. .++.........+|..+|++++|.|+ | .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 145678888874 3577887665 7899987 44344444444578999999999996 3 379999999
Q ss_pred CcEEEEeCCCcc------------eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1036 GAIGVFDAETLR------------FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1036 g~i~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
| |+||++.... .+..+... .......|...|-.+.|.- .|.+|+++|.||+||+|..+--.
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~---~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE---KVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceE---EeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhhhhh
Confidence 9 9999998422 11111111 1122458999999999998 78999999999999999986533
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=202.76 Aligned_cols=291 Identities=18% Similarity=0.219 Sum_probs=212.0
Q ss_pred eEEEEcc--CCCeEEEEEcCCCcEEEEecCCCccc-cccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 347 MSMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 347 ~~~~~sp--dg~~lla~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
.++.|++ +.+++||.+..||.|.++|.....-. ....|+ ....|.+.|..+.|-|-...|+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsa 118 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSA 118 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEc
Confidence 3456664 55679999999999999998754322 111111 134699999999999966789999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe------------------
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------ 485 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~------------------ 485 (1132)
+.|.++++||+++++..... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||++-..
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 99999999999998876543 46799999999999999887 89999999999999986322
Q ss_pred ---------EEEEecCCCCCeEE---EEeeccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCeE
Q 001176 486 ---------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWC 541 (1132)
Q Consensus 486 ---------~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~--------~~~~---~~~v 541 (1132)
.+...+.+...|.+ +.+.- |...|++++. |+.|+|||++....... +..+ ...+
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 11112234444444 32322 4478898888 99999999987554332 1222 2367
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ceeeeeccccCCceE-EEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 542 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
.++.....|.+|++.+. |+.|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+
T Consensus 275 ~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 78888888888776654 778999999864 345555555432222 23468999999999999999999998755
Q ss_pred eE-EEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCc
Q 001176 619 ML-TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 619 ~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.- ..+.+| ...|++++|.| +-.-++++++|.++++|++.++
T Consensus 351 ~~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 APPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 33 333444 44799999998 3345677799999999999766
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=210.46 Aligned_cols=297 Identities=11% Similarity=0.184 Sum_probs=226.5
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la 421 (1132)
.....++...++-..+++.|- ....||.+....... .+.+.+-.. ..-...+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~--~~~~~~k~k----------qn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSE--KCNHRFKTK----------QNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCCc--ceeeecccc----------cceeeehhhcccccchhhhhe
Confidence 346677777888776555552 467777766543221 111111000 00112455678876 678999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+++..|.|.+||+.....-+....+..|...+.++.|++...+ +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873332333367889999999999998877 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
|+|.. +..++++...|.+++||++... +...+..|.++|.|+.|+|++.+||+||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99876 5899999999999999998765 45578999999999999999999999985 778999999876655444
Q ss_pred ccccCCceEEEEEeCCCCE-EEEEE--cCCeEEEEECCCCe-eEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001176 581 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1132)
.-+...++.++.|-|...+ |++++ .|..|+|||++..- +..++..|. ..++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEeecCccHHHH
Confidence 4445558999999998765 44443 78899999998643 445566554 4788999976 6678889999998876
Q ss_pred EEcCCc
Q 001176 656 LANSDG 661 (1132)
Q Consensus 656 w~~~~~ 661 (1132)
-.+.++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555544
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=194.39 Aligned_cols=241 Identities=12% Similarity=0.159 Sum_probs=189.7
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeee------------------eecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~------------------l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
|+++|.|+.|..|.|||+.-...+.+... -.+|+..|.+++|+..-++ .|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 67999999999999999864322222112 2379999999999988877 8999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
||+.+|++..++..|...|.++.|+|... .+|++|+.|++|.+.|.+........-.-.+.|-.++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999999999999999999999998754 89999999999999999954333322224567889999998877666653
Q ss_pred CCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
.+|+++-+|++. ++++.+++.|.+ .|.++++++.- ..+++++.|+.|++|++............-..+...|.+
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA 425 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc
Confidence 489999999986 589999999998 89999998865 567779999999999987644432222111122456777
Q ss_pred EcCC-CCEEEEEeCCCcEEEEEcCCcce
Q 001176 637 FNKE-GSLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 637 ~s~~-~~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
+.|+ .-.++.|+..+.+++||+.+...
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChh
Confidence 7774 34678888888999999988733
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=176.36 Aligned_cols=253 Identities=13% Similarity=0.197 Sum_probs=193.3
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC-CCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~ 477 (1132)
-.+|.+-|.|+.|.+-|+++|+|+.|++|+|||.+. .....+....+.|.+.|..+.|.+- |+ .+++|+.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 457999999999999999999999999999999544 3445666678899999999999764 55 899999999999
Q ss_pred EEECCC------C---eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE------ec-------
Q 001176 478 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD------YD------- 535 (1132)
Q Consensus 478 vwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~------~~------- 535 (1132)
||.-.. + ....++......|+.++|.|..-|-.+++++.||.+|||+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 1234666778899999999998889999999999999998755433221 11
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEecC-CCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCC----CEEEEE
Q 001176 536 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR----NRFLAA 603 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 603 (1132)
.+..+..|+.|+|. ..+|+.++.+ ....+.++||....+. .+.++.+|.+ +|+.++|.|+- ..++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23346789999874 3567777642 1223467777765432 3456677777 99999999974 568889
Q ss_pred EcCCeEEEEECCCCe--------------------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 604 GDEFQIKFWDMDNMN--------------------MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 604 ~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+.|| |+||++.... .+..+.. |...|..+.|+-.|..|++.++||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 2223333 45589999999999999999999999999764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-20 Score=184.43 Aligned_cols=304 Identities=17% Similarity=0.224 Sum_probs=221.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
...+|..+.|.+++...+|||+.|..|+||.+..+..-... . ...-...+..|...|++|.|+|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeee
Confidence 45799999999988757999999999999999866543210 0 0112234788999999999999999999
Q ss_pred EEeCCCeEEEEEec--------C-----CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 422 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 422 s~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222344557889999999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----CeEEEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------APG----NWCTMMA 545 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~~----~~v~~~~ 545 (1132)
.+.+|...|..++|.|-. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999998876 899999999877776654332221110 011 1345678
Q ss_pred EcCCCCEEEEEecCCCC-----CCeEEEEeCCC-CceeeeeccccCCceEEEEEeCC-----------------CCEEEE
Q 001176 546 YSADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTT-----------------RNRFLA 602 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~ 602 (1132)
|+|||..+++....-+- -+..++++-.. .++...+.+... ....+.|+|- -+.+++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999865431111 22344554332 223333443333 3444444431 122333
Q ss_pred EEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 603 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
......|++||.++..++.....- +...++.++|++||..|+..+.||...+..++..
T Consensus 317 iAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 344668999999998888776432 2458999999999999999999998888777655
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=194.02 Aligned_cols=329 Identities=12% Similarity=0.240 Sum_probs=234.9
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC--EEEEEeCCCcE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGI 653 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i 653 (1132)
+-..+.+|.+ .|.++...|.|.+|++|+.||+|+||.+.+|.++.+....+ .|.+++|+|.+. .||++..+ .+
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ce
Confidence 3345778887 89999999999999999999999999999999999998754 689999999654 45555444 46
Q ss_pred EEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccc
Q 001176 654 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 733 (1132)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1132)
.+.+..-|.++.... ..... +-.|
T Consensus 467 ~ivnp~~G~~~e~~~---t~ell---------------------------~~~~-------------------------- 490 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGP---TKELL---------------------------ASAP-------------------------- 490 (733)
T ss_pred EEeCccccchhhhcc---hhhhh---------------------------hcCC--------------------------
Confidence 665543331111100 00000 0000
Q ss_pred ccccccccCceeeeecCCCCCCC--cceEEecCCcccccceEEEEEecCCceEEeeccc---ceeEEEeeccccCCCCCc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPS--QIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGK 808 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~ 808 (1132)
.....+..+..|.-....... .+..+. |...|..+.|+..|.+|++...+ ..|.|+.+.....
T Consensus 491 --~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----- 558 (733)
T KOG0650|consen 491 --NESEPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----- 558 (733)
T ss_pred --CccCCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc-----
Confidence 001112455566544322211 222222 67789999999999999987664 4566665542211
Q ss_pred cccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeC
Q 001176 809 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 888 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 888 (1132)
. ..+.- . .+.|.++.|+|...++++++...|++||+..+.+++.+......|..++.+|
T Consensus 559 -----------------Q-~PF~k--s-kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 559 -----------------Q-SPFRK--S-KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred -----------------c-Cchhh--c-CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 1 11211 1 5678999999999999999999999999999988888888888999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc----ceeeeC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----SRFIQA 963 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~ 963 (1132)
.|..|+.|+.|+.+..||+.-+ +..+++..|...+++++|++.-.++++|+.||++.++.-.-...+. ...+..
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 8999999999999999999854 6778899999999999999999999999999999988543211110 011122
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 964 PAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 964 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
+.||.. .....|..+.|.|...+|++++.||+|++|
T Consensus 697 L~gH~~------------------------------------------~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEK------------------------------------------TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCcee------------------------------------------ecccceEeecccCCCceEEecCCCceEEee
Confidence 222210 003458889999999999999999999998
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=210.17 Aligned_cols=245 Identities=13% Similarity=0.214 Sum_probs=195.5
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCC---CccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
....|+|+.--..+|||++..|.|.+||+.. .+.+ .++..|+..|.++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence 4566788865556899999999999999986 2222 23778999999999999 46789
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~ 499 (1132)
++|+.||+|++||++..+... ++.+....|.+|.|+|...+ .++++.+.|.+.+||++.. ++...+.+|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876554 56678889999999997655 8999999999999999864 556788899999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCeEEEEEEcCCCCE-EEEEecCCCCCCeEEEEeCCCCc-e
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGA-I 576 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~ 576 (1132)
+.|+| ++.+|+||+.|++|+|||+.+.........+ ..++.++.|-|+..+ |++++. -.+-.|++||++..- +
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccc
Confidence 99999 4589999999999999999876654444433 458999999998765 555554 246779999998654 5
Q ss_pred eeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCC
Q 001176 577 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
..++..|.. .++.++|.. |...+.+++.||.|..-.++++
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 567778877 788899965 3456777888888776555543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=178.82 Aligned_cols=296 Identities=17% Similarity=0.272 Sum_probs=215.6
Q ss_pred ceEEeec--CCCCeeEEEEcc----CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCe
Q 001176 335 TVVRTLN--QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 408 (1132)
Q Consensus 335 ~~~~~l~--h~~~V~~~~~sp----dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 408 (1132)
++...+. |+.+|..++|.+ +...++|+.+ .+.+.||+......+. -++...-..|...-
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esf 92 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESF 92 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcce
Confidence 3444444 889999999995 3334667665 4688999886543211 01111122477888
Q ss_pred EEEEEcCCC----CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 409 NRCVWGPDG----LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 409 ~~v~~spdg----~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
..++|+-|. .++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++.
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCC
Confidence 899998753 378999999999999999988766 68899999999999999887 8999999999999999999
Q ss_pred eEEEEe---cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE----------------------------E
Q 001176 485 RKQYTF---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------------------------D 533 (1132)
Q Consensus 485 ~~~~~~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------------------------~ 533 (1132)
.++..| .+|.+.|.++.|++++ .+|++++.|.++++|++...+-.. .
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999877 4699999999998755 799999999999999987322110 0
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCce-------------eeeeccccCCceEE--EEEeCCC
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI-------------KRTYSGFRKRSLGV--VQFDTTR 597 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-------------~~~~~~~~~~~v~~--~~~~~~~ 597 (1132)
...|...|-|+.|- |+++++-+ .++.|..|... -++. +..+..... .+.- .+|.|-+
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQ 319 (385)
T ss_pred cccccchHHHHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHH
Confidence 11222333344432 45666654 36689999872 1111 122222221 3333 4566777
Q ss_pred CEEEEEEcCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 598 NRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
+.|+.|...|.|++||++..++ ..++..+.....|...+|+.||..|+...+|++|.-||.
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 8999999999999999987665 334444455568999999999999999999999999985
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-21 Score=219.12 Aligned_cols=251 Identities=15% Similarity=0.271 Sum_probs=206.9
Q ss_pred CcCeEEEEEcCCCCe----EEEEeCCCeEEEEEecC---CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 405 AISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~----las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
...-+.++|.+.|.. ||.|..||.|.+||... +...........|.+.|..+.|++...+ ++++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 456788999998775 88899999999999876 4444444467789999999999999877 899999999999
Q ss_pred EEECCCCeEEEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEEEEEEcCCCC-E
Q 001176 478 VWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGT-R 552 (1132)
Q Consensus 478 vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~-~ 552 (1132)
|||+.+-+.-.++. .....|.+++|+.. ..++|++++.+|.+.|||++..+.+..+..+.+ .+..++|+|+.. .
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99998865544442 24578999999754 347899999999999999999988887766655 578999999875 4
Q ss_pred EEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++++ +.|+...|.+||++. ...++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+.
T Consensus 222 l~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-- 297 (1049)
T KOG0307|consen 222 LLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-- 297 (1049)
T ss_pred eeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--
Confidence 55554 445688999999885 457788888887 79999999977 7888899999999999999999999987543
Q ss_pred CcceEEEcC-CCCEEEEEeCCCcEEEEEcCCc
Q 001176 631 ASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+..+.|+| +...+++++.||.|.|+.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 789999999 4558999999999999998765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-19 Score=188.42 Aligned_cols=415 Identities=13% Similarity=0.155 Sum_probs=282.0
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
.|..++|-|||..|+.+. +.++.+||.+.|..+.++++|.+ .|.+++|+.||+.+++|+.|..|.+|+..-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999888775 45699999999999999999998 899999999999999999999999998653222
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 699 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 699 (1132)
+. . .|...|.|+.|+|-...|++++-. ..-+|..... . + ..
T Consensus 88 Lk-Y---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~-V---~K----------------------------- 128 (1081)
T KOG1538|consen 88 LK-Y---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-S-V---SK----------------------------- 128 (1081)
T ss_pred ee-e---ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-h-H---Hh-----------------------------
Confidence 22 1 234589999999988889888754 4556654322 0 0 00
Q ss_pred cccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEec
Q 001176 700 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 779 (1132)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 779 (1132)
.....++.+.+|+.
T Consensus 129 ------------------------------------------------------------------~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 129 ------------------------------------------------------------------HKSSSRIICCSWTN 142 (1081)
T ss_pred ------------------------------------------------------------------hhhheeEEEeeecC
Confidence 01345688999999
Q ss_pred CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC-----CEEEE
Q 001176 780 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMS 854 (1132)
Q Consensus 780 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg-----~~la~ 854 (1132)
||++++.|-.+|+|.+-+- .|+.........+. ..+|.+++|+|.. ..+++
T Consensus 143 DGqylalG~~nGTIsiRNk-----------------------~gEek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNK-----------------------NGEEKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred CCcEEEEeccCceEEeecC-----------------------CCCcceEEeCCCCC-CCCceEEEecCCCCCCccceEEE
Confidence 9999999999999998632 22211111121224 7899999999954 35666
Q ss_pred ee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC
Q 001176 855 AS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 933 (1132)
Q Consensus 855 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 933 (1132)
.+ ..++.+|.++ |+.+..-+.-.-...|+.+.+ +|.++..|+.|+.+.+|. ..|-.+.++-....-|+.++..|++
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC
Confidence 66 6677777774 555544444445567899999 999999999999999997 4566777777677889999999999
Q ss_pred CEEEEEcCCCcEEEEECCCccccc-------------ceeeeCCCCCC--------------------CCC--CCceeEE
Q 001176 934 NALVSSGADAQLCMWSIDKWEKLK-------------SRFIQAPAGRQ--------------------SPL--VGETKVQ 978 (1132)
Q Consensus 934 ~~l~s~~~D~~i~iwd~~~~~~~~-------------~~~~~~~~~~~--------------------~~~--~~v~~~~ 978 (1132)
++++.|+.||+|.-|++.....-. ...++.+.... ... ..|.--.
T Consensus 276 Q~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYe 355 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYE 355 (1081)
T ss_pred ceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEe
Confidence 999999999999999875432100 00000000000 000 0000000
Q ss_pred EC-------------------------CCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEc--cCC-CEEE
Q 001176 979 FH-------------------------NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS--CDG-LLVY 1030 (1132)
Q Consensus 979 ~s-------------------------~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s--~dg-~~la 1030 (1132)
.+ --+.+++.+.+..+..+|..+-..+.|... +-|.-+... |-| .-|+
T Consensus 356 l~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~----S~iRYikV~GGP~gREgL~ 431 (1081)
T KOG1538|consen 356 LYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQME----SLIRYIKVIGGPPGREGLL 431 (1081)
T ss_pred ccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHH----HHHHhhhhhcCCCCcceeE
Confidence 00 013445556677777788766555555331 222222221 333 3588
Q ss_pred EEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1031 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1031 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
.|..+|.|.-.=+++.-++-.. ..-..|.|+..+. ....|++-...++..++|+.++|-.++.|.-
T Consensus 432 vGlknGqV~kiF~dN~~PiLl~------------~~~tAvrClDINA-~R~kLAvVDD~~~c~v~DI~t~elL~QEpg~ 497 (1081)
T KOG1538|consen 432 VGLKNGQVLKIFVDNLFPILLL------------KQATAVRCLDINA-SRKKLAVVDDNDTCLVYDIDTKELLFQEPGA 497 (1081)
T ss_pred EEecCCcEEEEEecCCchhhee------------cccceeEEeeccC-CcceEEEEccCCeEEEEEccCCceEeecCCC
Confidence 8888887654444433222111 2235677888777 6678999999999999999999988877653
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=209.17 Aligned_cols=233 Identities=11% Similarity=0.220 Sum_probs=208.6
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+. .+.+|+.+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 777888888866666 79999999999999886544332 2678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. ++++|+.|+.+++||++...+.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988776 7889999999999999999 789999999999999998889999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
|+|++ .+++.++.|.++++||...++....+..|.+.+.++.|+|..-.++.|+. |+++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98854 89999999999999999999999999999999999999999888888875 7889999999988888777
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcC
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1132)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 79999999999988887644
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=175.99 Aligned_cols=300 Identities=16% Similarity=0.206 Sum_probs=209.7
Q ss_pred cccceEEEEEec----CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 768 AASKVVRLIYTN----SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 768 ~~~~i~~~~~s~----~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
|...|..++|++ +...+++......+.+|...... .+ .++.. .....| +.....+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~i--------r~lq~-y~D~d~-~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GI--------RLLQS-YADEDH-DESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------ce--------eeeee-ccCCCC-CcceEEE
Confidence 667788888873 33445666666678888765321 00 11111 111124 6677788
Q ss_pred EEeeCC----CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee-
Q 001176 844 ALSKND----SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL- 917 (1132)
Q Consensus 844 ~~s~dg----~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 917 (1132)
+|+-|- .++|+|+ -|.|+|.|+.++++...+.+|..+|+.|.|.|...++|++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 887643 3677777 7999999999999999999999999999999987899999999999999999999999886
Q ss_pred --ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeC---CCCCCC--C---------------CCCce
Q 001176 918 --KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA---PAGRQS--P---------------LVGET 975 (1132)
Q Consensus 918 --~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~---~~~~~~--~---------------~~~v~ 975 (1132)
.+|.+.|.++.|+++|.+++|+|.|.++++|++...+......... .++... + ...|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 6899999999999999999999999999999998543221111100 000000 0 01111
Q ss_pred eEEECCCCcEEEE-EeCCeEEEEeC-CCCce-eecCCC----------CCCCCCeEEEEEc--cCCCEEEEEecCCcEEE
Q 001176 976 KVQFHNDQTHLLV-VHESQISVYDS-KLECS-RSWSPK----------DALPAPISSAIYS--CDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 976 ~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~-~~~~~~----------~~h~~~i~~i~~s--~dg~~las~~~dg~i~v 1040 (1132)
++.| -|.++++ +.++.|..|.. +.+.- ....+. ..-...|.-+.|+ |-++.||.|.+.|.|++
T Consensus 256 Cvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 1111 1567777 77889999987 22111 111111 1113456666665 55889999999999999
Q ss_pred EeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1041 FDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
||++..+....- ....+.....|...+|+- |+.+|+..+.|+.|.=||..
T Consensus 334 wdL~~~ep~~~t-------tl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCT-------TLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCc-------eEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999987764221 122234456777888988 89999999999999999864
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=186.45 Aligned_cols=293 Identities=17% Similarity=0.257 Sum_probs=213.8
Q ss_pred cccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE-EeecccceeEEEeeccccCCCCCcccccc
Q 001176 735 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANV 813 (1132)
Q Consensus 735 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 813 (1132)
..++.....+++||+............+ ....+.++.|+.....+ +..+.|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 3455566789999998755433332222 12237788887766432 3345578888885321
Q ss_pred ccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCC
Q 001176 814 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 892 (1132)
Q Consensus 814 ~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~ 892 (1132)
.++++......+ ...-.|++......|+++|+ .+.|+|||++...+.+.+++|...|+++.+.- ...
T Consensus 67 -------~~~~Vp~~~k~~----gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~De 134 (673)
T KOG4378|consen 67 -------KTPEVPRVRKLT----GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDE 134 (673)
T ss_pred -------CCCccceeeccc----cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccc
Confidence 122222221222 22445565555668999998 89999999998788888999999999999998 778
Q ss_pred eEEEEeCCCcEEEEEcccceeeeeeccccC-CeeEEEEcCCCCE-EEEEcCCCcEEEEECCCcccccceeeeCCCCCCCC
Q 001176 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQN-RITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 970 (1132)
Q Consensus 893 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 970 (1132)
+||+++..|.|.|..+.++.....|....+ .|.-+.|||..++ |.+++.+|.|.+||+..... .......|.
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs-- 208 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS-- 208 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc--
Confidence 999999999999999999887777764434 4568899998765 66789999999999987442 223334444
Q ss_pred CCCceeEEECCCCcEEEE--EeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 971 LVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 971 ~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
.+...++|+|....|++ |.|+.|.+||+..+........ ..+.++++|+++|.+|++|+..|.|..||++..+.
T Consensus 209 -AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 209 -APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred -CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 56788999998877666 6899999999943332222222 67899999999999999999999999999996543
Q ss_pred ecccCCCccccccccCCCCCCcEEEEeCC
Q 001176 1049 RCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1077 (1132)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 1077 (1132)
|..+.+.|...|++++|-|
T Consensus 285 ----------Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 285 ----------PVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ----------CceEeeecccceeEEEeee
Confidence 4445578899999999988
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-17 Score=188.32 Aligned_cols=371 Identities=23% Similarity=0.406 Sum_probs=280.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC-ceeeeeeeeccc-CCEEEEEE-ecCCCcEEEEE-EcCCCcE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 476 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~-~~v~~v~~-s~d~~~~~l~s-~~~dg~v 476 (1132)
...|...+.++.+.+++..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999999876 333 344433 36777777 777763 3344 4459999
Q ss_pred EEEECCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC-EE
Q 001176 477 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RL 553 (1132)
Q Consensus 477 ~vwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 553 (1132)
.+||... ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..|...+.+++|+|++. .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888999999999999998866 57888875 99999999998778888888999999999999998 44
Q ss_pred EEEecCCCCCCeEEEEeCCCCceee-eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee-EEEEeCCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 631 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 631 (1132)
++++ .++.+++||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+..| ...
T Consensus 215 ~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 286 (466)
T COG2319 215 ASGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSS 286 (466)
T ss_pred EEec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Ccc
Confidence 4433 37789999988888877 6787776 33 338999998888999999999999987665 4444333 458
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
+.++.|.|++..+++++.|+.+.+|+..+... .....
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-LSSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-EEEee------------------------------------------
Confidence 89999999888888898898899997765511 11000
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
..
T Consensus 324 -----------------------------------------------------~~------------------------- 325 (466)
T COG2319 324 -----------------------------------------------------LK------------------------- 325 (466)
T ss_pred -----------------------------------------------------ec-------------------------
Confidence 00
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe-e-CCeEEEEECCCCe
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFK 869 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~ 869 (1132)
.| ...+..+.+.+++..++.+ . |+.+.+|+.....
T Consensus 326 ------------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 326 ------------------------------------------GH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ------------------------------------------cc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 01 2234455552222444444 3 6677778877666
Q ss_pred EEEEeeCCCCCeEEEEEeCCCCCeEEE-EeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 870 VMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 870 ~~~~~~~~~~~i~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
........ ..+..+.+.+ + ..+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|
T Consensus 363 ~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 363 PLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred eeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 22222222 2288899988 7 55554 7899999999999888777666554788999999999999999999999999
Q ss_pred ECCC
Q 001176 949 SIDK 952 (1132)
Q Consensus 949 d~~~ 952 (1132)
+...
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9987
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-19 Score=173.22 Aligned_cols=289 Identities=13% Similarity=0.183 Sum_probs=211.3
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc-------CCC
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDG 417 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pdg 417 (1132)
-...+.|||||. .+.+-+.|..+.+|++...-.-....-. ...+.+..+--.....|...+|- |+.
T Consensus 51 f~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 456789999999 5777789999999998642111000000 00011111111234567777774 577
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccC---CEEEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeEE--EEe-
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YTF- 490 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~-~~~~~~--~~~- 490 (1132)
.++|+.+.+.-|++||.-+|+..... ....|.. ...+++|+|||. .|+. +..+.|+++|+ +.|+.- +.-
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 89999999999999999998754322 2223443 446899999999 5665 45789999998 555421 211
Q ss_pred ----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 491 ----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 491 ----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
.+..+-+.+++|+|... ..++.++...++-+|.-...++...+.+|.+.|+.++|.++|+.|.+++. .+..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeE
Confidence 13467788999999754 68999999999999998989999999999999999999999999999985 46679
Q ss_pred EEEeCCC-CceeeeeccccCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 567 VEWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 567 ~~wd~~~-~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccc
Confidence 9999985 55666666664422122 45578899999999999999999998 776777766644 799999999988
Q ss_pred EEEEEeCC
Q 001176 643 LLAVTTSD 650 (1132)
Q Consensus 643 ~l~~~~~d 650 (1132)
++++++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88877654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-16 Score=183.82 Aligned_cols=287 Identities=25% Similarity=0.444 Sum_probs=220.4
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc-cccccceeeeecccccccccccccCCCC-cCeEEEEE-cCCC
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPDG 417 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-spdg 417 (1132)
.|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ ++++
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 122 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPDG 122 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCCc
Confidence 4888999999999998 57888889999999998875 2221 22222 36777777 8888
Q ss_pred C-eEEEEeC-CCeEEEEEecC-CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeEEEEecCC
Q 001176 418 L-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEGH 493 (1132)
Q Consensus 418 ~-~las~~~-dg~i~iwd~~~-~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h 493 (1132)
. .++..+. |+.+.+|+... ..... .+..|...|.+++|+|++. .+++++. |+.+++|++..++.+..+.+|
T Consensus 123 ~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 123 NSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 8 5555444 99999999997 43333 5778999999999999998 7888875 999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
...|.+++|.|.+. ..+++++.|+.|++||...+.... .+..|.... ...|++++..+++++. ++.+++|+..
T Consensus 198 ~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~~ 271 (466)
T COG2319 198 TDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDLR 271 (466)
T ss_pred CCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeeec
Confidence 99999999985442 255556999999999888666665 566676664 3389999988886654 7889999998
Q ss_pred CCce-eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe--CCCCCCCcceEEEcCCCCEEEEE-e
Q 001176 573 EGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD--ADGGLPASPRLRFNKEGSLLAVT-T 648 (1132)
Q Consensus 573 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~-~ 648 (1132)
.... ...+.+|.. .+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.|.+++..++.+ .
T Consensus 272 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 348 (466)
T COG2319 272 SSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGGS 348 (466)
T ss_pred CCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEeec
Confidence 7664 444445544 89999999988888888888899999998887776665 4432 57888883332455555 5
Q ss_pred CCCcEEEEEcCCc
Q 001176 649 SDNGIKILANSDG 661 (1132)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (1132)
.|+.+.+|+....
T Consensus 349 ~d~~~~~~~~~~~ 361 (466)
T COG2319 349 DDGTIRLWDLRTG 361 (466)
T ss_pred CCCcEEeeecCCC
Confidence 6777877876544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-19 Score=176.16 Aligned_cols=265 Identities=13% Similarity=0.192 Sum_probs=190.3
Q ss_pred cccceEEeecCCCCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCcc-ccccceeeeecccccccccccccCCCCcCeE
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
.|.-....+.|.+.++.+.-++-|+ .+.|+=+..|.|.||++...-. +....+.+-+ ....+...+.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 3444556667888999998888753 4566778899999999864211 1110110000 01111223678999999
Q ss_pred EEEEcCC-CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---e
Q 001176 410 RCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---R 485 (1132)
Q Consensus 410 ~v~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~ 485 (1132)
.++|||- -..|++|.--+.|++|...++.-..-...+.+|+..|..++|||..+. +|+|||.||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 9999993 234778877788999999987654444467789999999999998877 8999999999999999988 3
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
++.+ +.|...|+.|.|+... .+|++|+.||+++|||++.- ..+..+..|..+|+++.|+|.....+.++. .
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~ 368 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---E 368 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---C
Confidence 4444 7899999999997655 59999999999999999864 456788999999999999997655444432 3
Q ss_pred CCeEEEEeCCCCce----------------eeeeccc-cCCceEEEEEeCCC-CEEEEEEcCC
Q 001176 563 ESHLVEWNESEGAI----------------KRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEF 607 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg 607 (1132)
|.+|.+||+....- .+-+-.| .+..+.-+.|++.- .++++.+.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 78899999853211 0111122 22246667888765 4666677776
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-20 Score=208.28 Aligned_cols=260 Identities=12% Similarity=0.154 Sum_probs=203.3
Q ss_pred eEEeecCCCCeeEEEEccCCCe---EEEEEcCCCcEEEEecCCC---ccccccceeeeecccccccccccccCCCCcCeE
Q 001176 336 VVRTLNQGSNVMSMDFHPQQQT---ILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 336 ~~~~l~h~~~V~~~~~spdg~~---lla~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
.+..+.-..+-+.++|.+.|.. ++|.|..||.|.+||...- .... .......|++.|.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~ 120 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVL 120 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCcee
Confidence 3444555567889999998775 6999999999999998752 1111 0112567999999
Q ss_pred EEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 410 RCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 410 ~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
.+.|++... +||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccc
Confidence 999999655 99999999999999999754332111 1124568999999987776 79999999999999999998887
Q ss_pred EecCCCC--CeEEEEeeccCCccEEEEEecCC--eEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCC-CEEEEEecCCCC
Q 001176 489 TFEGHEA--PVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEG 562 (1132)
Q Consensus 489 ~~~~h~~--~v~~i~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~ 562 (1132)
.+..|.+ .+..++|+|+...+++++...|+ .|.+||++.... ...+.+|...|.++.|++.+ .+|++++.
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk---- 274 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK---- 274 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----
Confidence 7766554 57789999987644444444443 499999987654 44667999999999999977 77778764
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCe
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (1132)
|++|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 88899999999999999988554 899999999886 67778999999999987654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=175.20 Aligned_cols=235 Identities=15% Similarity=0.241 Sum_probs=188.4
Q ss_pred ccCCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCce----eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 400 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
.+.||+++|..++|+| +...||+||.|.+|.||++..+... .....|.+|...|.-++|+|...+ .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 6778999999999999999876432 345578999999999999999887 789999999
Q ss_pred cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-eEEEEEEcCCCCEE
Q 001176 475 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 553 (1132)
Q Consensus 475 ~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 553 (1132)
+|.+||+.+|+.+.++. |.+.|++++|+. ||.++++++.|+.||+||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 999999999976 559999999999999999999988887766655 566777888998 6
Q ss_pred EEEecCCCCCCeEEEEeCCCCce---eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCee-EEEEeCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 628 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1132)
++.+.++-.+.++-+||...-+. ...+.. ...|.--.+.++.+.++.+| .|+.||.|.+....+ +..+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 67777777889999999876442 233333 22466667888888888766 899999999987553 333333333
Q ss_pred CCCcceEEEcCCC
Q 001176 629 LPASPRLRFNKEG 641 (1132)
Q Consensus 629 ~~~v~~~~~s~~~ 641 (1132)
..+-..+.|.|..
T Consensus 309 ~epQRG~g~mPKR 321 (472)
T KOG0303|consen 309 KEPQRGMGFMPKR 321 (472)
T ss_pred CCccccccccccc
Confidence 3455677777743
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=169.80 Aligned_cols=409 Identities=12% Similarity=0.125 Sum_probs=256.7
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
-+.|||+|+++|+++.- .+.|-|.++-+..+. ..--..|..+.|..|... .|.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 788888887554331 122457888999998875 566678899999999999998889
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
+.....++.+++|+|++. .+|.+...|-.|.+|.+.+...... ......+..++|+|||++.+.++. +|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 988899999999998754 6788888899999999987665443 223345688999999999998864 1111122222
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
.-..-.+++.+..... ..+.+.|+|||+.+++-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2223344555555444 567799999999887643 23333333221 147889999999999999
Q ss_pred eCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCc
Q 001176 648 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 727 (1132)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1132)
+.|+.+|+.+--+- +.+..+- |...+.
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~~--------------------------------------------------- 255 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSYH--------------------------------------------------- 255 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhcc---------------------------------------------------
Confidence 99999999875433 2111110 100000
Q ss_pred ccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 728 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 728 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
+... ..++. +. ... -.-...++.|.|..- ...+|....... +.
T Consensus 256 ----dp~~--------~~~~k-e~------~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y--E~ 298 (447)
T KOG4497|consen 256 ----DPTL--------HLLEK-ET------FSI-------VQLLHHCLSFTPTDL---------EAHIWEESETIY--EQ 298 (447)
T ss_pred ----Cchh--------hhhhh-hh------cch-------hhhcccccccCCCcc---------ccCccccchhhh--hh
Confidence 0000 00000 00 000 000012333333221 001110000000 00
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeC---CeEEEEECCCCeEEEEeeCCCCCeEEE
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATFL 884 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l 884 (1132)
..+ . + .....++... .+ ++ ...+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|.+.
T Consensus 299 ~~~-p--v---~~~~lkp~tD-~p--nP-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf 367 (447)
T KOG4497|consen 299 QMT-P--V---KVHKLKPPTD-FP--NP-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAF 367 (447)
T ss_pred hhc-c--e---eeecccCCCC-CC--Cc-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEE
Confidence 000 0 0 0000001110 11 12 456778999999999999985 569999998877655544 56789999
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcE
Q 001176 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 945 (1132)
Q Consensus 885 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i 945 (1132)
.|+| +...|+.......+++|.......+. ..+..-.|..+.|.-+|..++-.+.|...
T Consensus 368 ~WdP-~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 368 EWDP-GRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EeCC-CCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 9999 77777777777789999876534333 33344679999999999999999998743
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-18 Score=172.75 Aligned_cols=300 Identities=18% Similarity=0.233 Sum_probs=216.8
Q ss_pred ccceEEEEEecCCc-eEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 769 ASKVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
...+..+.|.+++. .+++++.|..|++|.+........... ......+.. | ...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls~--H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLSR--H-TRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeecccC--C-cceeEEEEEcC
Confidence 35688889988877 899999999999998875433211100 011112333 7 99999999999
Q ss_pred CCCEEEEee-CCeEEEEECC--------C--------CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 848 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
+|..||+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6899999765 2 345667788999999999999 999999999999999999999
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccccee---eeCCCCCC------------CCCCCce
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQ------------SPLVGET 975 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~---~~~~~~~~------------~~~~~v~ 975 (1132)
|+....+..|...|..++|.|-++++++-+.|...+.+.+.......... +....++. ....-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777665433222111 01111110 0012344
Q ss_pred eEEECCCCcEEEE-E----eCCeE-----EEEeC-CC-CceeecCCCCCCCCCeEEEEEcc------------------C
Q 001176 976 KVQFHNDQTHLLV-V----HESQI-----SVYDS-KL-ECSRSWSPKDALPAPISSAIYSC------------------D 1025 (1132)
Q Consensus 976 ~~~~s~dg~~l~~-~----~d~~v-----~vwd~-~~-~~~~~~~~~~~h~~~i~~i~~s~------------------d 1025 (1132)
.++|+|||.++++ + .++.+ ++|+- .. .....+... ..+...+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEecccccccccccccc
Confidence 6889999999998 2 13333 44544 11 222222221 45666666665 1
Q ss_pred CCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1026 GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1026 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+-.+|.++ .+.|+|||.++..+++...- -|=..++.++|++ ||..|+.++.||-..+--++..|
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~n----------ihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVDN----------IHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEee----------eeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 22344444 67899999999888877653 3446778999999 88999999999988887777766
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=177.09 Aligned_cols=310 Identities=12% Similarity=0.119 Sum_probs=225.4
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCeEEEEEEcCCC-CEEEE
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG-TRLFS 555 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~ 555 (1132)
+.+-......+-+..+|++++|+|..+..++++|..-|.|-+||+.+.+ ....+..|..+|.++.|+|.. ..+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 3333444556668899999999999988999999999999999996433 345778899999999999965 46666
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeecc--ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee-EEEEeCCCCCCCc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPAS 632 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 632 (1132)
.+. ||+|++-|++.+..-..+.. ... .+..+.|+.+...++.++.=|...+||.+++.. ...+..|.. .|
T Consensus 253 sSy----DGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI 325 (498)
T KOG4328|consen 253 SSY----DGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KI 325 (498)
T ss_pred ecc----CceeeeeeecchhhHHHhhcCccce-eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--cc
Confidence 665 88999999987653333322 222 577788988888889988888999999998654 555555644 89
Q ss_pred ceEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 633 PRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 633 ~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
.+++++| ...+|++++.|++++|||++.-. +...+
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-------~K~sp------------------------------------- 361 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLR-------GKASP------------------------------------- 361 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhc-------CCCCc-------------------------------------
Confidence 9999999 66789999999999999986431 10000
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
.+....|...|.++.|||++..|++.+.|.
T Consensus 362 --------------------------------------------------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 362 --------------------------------------------------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred --------------------------------------------------ceecccccceeeeeEEcCCCCceEeeccCC
Confidence 000012778899999999998899999999
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.|+|||... +.-|+...+.+......+ +| -.....+|.||..++++|. -..|-|+|-..++.
T Consensus 392 ~IRv~dss~--------------~sa~~~p~~~I~Hn~~t~-Rw--lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 392 EIRVFDSSC--------------ISAKDEPLGTIPHNNRTG-RW--LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred ceEEeeccc--------------ccccCCccceeeccCccc-cc--ccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 999998631 112233333333221111 12 1234567999999999998 67899999999998
Q ss_pred EEEeeCCCC-CeEE-EEEeCCCCC-eEEEEeCCCcEEEEEcc
Q 001176 871 MTMFMSPPP-AATF-LAFHPQDNN-IIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 871 ~~~~~~~~~-~i~~-l~~sp~~~~-~lasg~~dg~v~iwd~~ 909 (1132)
+..+..+.. .|.+ ..|+| -+. ++|-++..|.|+||.-+
T Consensus 455 v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eeeccCccccccccceeecc-cccceeccCCccceEEEEecC
Confidence 888766554 5665 48999 566 55555677889988643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=174.18 Aligned_cols=245 Identities=18% Similarity=0.253 Sum_probs=191.8
Q ss_pred cCCCCcCeEEEEEcCCC--CeEEEEeCCCeEEEEEecCC-------------CceeeeeeeecccCCEEEEEEecCCCcE
Q 001176 401 LNDAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 465 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg--~~las~~~dg~i~iwd~~~~-------------~~~~~~~~l~~h~~~v~~v~~s~d~~~~ 465 (1132)
..+|.+.++.+.-++-| .+.|+-+..|.|.||++... ...+...++.+|.+.=..++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 45688888888888754 45666678999999998531 223455678899999999999994332
Q ss_pred EEEEEcCCCcEEEEECCCCeEE---EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 540 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~ 540 (1132)
.++||.--+.|++|...+|.-. ..|.+|...|..++|+|..+ ..|++||.||+|+|||++.+.. -...+.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 4889988899999999887654 35678999999999999877 6999999999999999998733 2344788899
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC---CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 616 (1132)
|+.+.|+....+|++|+. +|++.|||++. ++++..|+.|.. +|+++.|+|.. ..|+++|.|..|.+||+..
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999888888864 88999999985 668889998888 99999999976 5667788999999999853
Q ss_pred Cee----------------EEEEeCCCCCCCcceEEEcCC-CCEEEEEeCCCc
Q 001176 617 MNM----------------LTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNG 652 (1132)
Q Consensus 617 ~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 652 (1132)
..- -+.+-.|.+...+..+.|++. ..++++.+.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 211 112223444557889999984 446777777753
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-17 Score=171.13 Aligned_cols=499 Identities=11% Similarity=0.076 Sum_probs=296.6
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE-e-----cCCCcEEEEEEcCCCcE
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-A-----HPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-s-----~d~~~~~l~s~~~dg~v 476 (1132)
.|...|.|+.|+.+...+.+++++..+.-||+.+.. .... .+ ....|....+ - ..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 367778899999888877777555555555554432 2111 01 1111111111 0 01111167888899999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.+-+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.-. +..+..+......|+|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999998855 779999999999999743 33444455566789999999999888877
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
. .+.+.+=.+.....+..++.|.+ -|.++.|++..+.+++||+|-..++||... ..+..-..|.. +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhcc--ceeeee
Confidence 4 45688888877777788888887 899999999999999999999999999764 44444444443 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|+ +.++.++.. ++|+=.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~----------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSS----------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeeecC-----------------------------------------------------------
Confidence 9999 555655542 333100
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 796 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 796 (1132)
...+.|..++||+||..++.++..|.+.+-
T Consensus 254 --------------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 254 --------------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred --------------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 033568899999999999999998877653
Q ss_pred eeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEee
Q 001176 797 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM 875 (1132)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 875 (1132)
..-.. | -+ -+.+=++.. ...|.+-|+.++.+ ..+.
T Consensus 284 ~~ieq---------------------------------~---l~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE 319 (737)
T KOG1524|consen 284 YAIEQ---------------------------------Q---LV-------SGNLKATSKSRKSITVRDVATGVQ-DILE 319 (737)
T ss_pred eeehh---------------------------------h---hh-------hccceeEeeccceEEeehhhhhHH-HHhh
Confidence 21000 0 00 011111222 34466666665443 2222
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccc
Q 001176 876 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955 (1132)
Q Consensus 876 ~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~ 955 (1132)
....|......- .+|+++.. ..|++|.-........+.+....+.-+.-+ ...+++ ....+|.++..+....
T Consensus 320 -~p~rv~k~sL~Y---~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~ 391 (737)
T KOG1524|consen 320 -FPQRVVKFSLGY---GHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLH 391 (737)
T ss_pred -Cccceeeeeece---eEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCcee
Confidence 334555555543 24444333 257777655444333444444433222111 111222 2233455555544221
Q ss_pred ccceeeeCCCCCCCCCCCceeEEECCCCcEEEE--E-eCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEc----cCC
Q 001176 956 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--V-HESQISVYDS--KLECSRSWSPKDALPAPISSAIYS----CDG 1026 (1132)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~-~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s----~dg 1026 (1132)
... .++|... ...+.-..|-....|+. . +...+.+||. +++....-. .-.|...|..++.. ++.
T Consensus 392 ~np----~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk-~L~hk~~IveIAldqkG~tnD 464 (737)
T KOG1524|consen 392 LNP----RYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK-SLRHKQQIVEIALDQKGLTND 464 (737)
T ss_pred cCC----CCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc-ccchhhhHHHhHhhccCCCcc
Confidence 111 1111111 11111122323334444 2 2345778887 333322111 11235566666664 456
Q ss_pred CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1027 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1027 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+.+|.-...+.++|=.+.....-.++- .-+.-|..++|.. ..-+++|-.|+++.||-..+-.
T Consensus 465 rkVAFiDknrdl~ItsvKrfgkee~I~-----------KiGTmVhtLawnd--ttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 465 RKVAFIDKNRDLFITSVKRFGKEEEIY-----------KIGTMVHTLAWND--TTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred ceEEEEecCCcEEEEeehhcCchhhhh-----------hhhhhhhhhhhcc--ccceeeeeccceEEEEEcCCcc
Confidence 678877777878876665422211111 1124456788874 4567889999999999987644
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=177.93 Aligned_cols=262 Identities=11% Similarity=0.143 Sum_probs=190.0
Q ss_pred CCeeEEEEccC-------CCeEEEEEcCCCcEEEEecCCCccccccceeeeeccccc------ccccccccCCCCcCeEE
Q 001176 344 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAAS------MPLQNALLNDAAISVNR 410 (1132)
Q Consensus 344 ~~V~~~~~spd-------g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~V~~ 410 (1132)
.-..|++|... |+ ++|.|+.|..|.|||+.-...+. ....+.... .........+|+..|.+
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHH
Confidence 34456666532 45 79999999999999986432221 000000000 00112234579999999
Q ss_pred EEEcCC-CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-E
Q 001176 411 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-Y 488 (1132)
Q Consensus 411 v~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~ 488 (1132)
++|+.+ ...||+||.|.+|++||+.++++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+..... .
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 999986 4589999999999999999998765 56789999999999998776 8999999999999999853222 2
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
.+ ...+.|-.++|.+... ..++++..||+|+-+|++.. +++..+..|...|.++++++.-..+++.+. .++.+.
T Consensus 325 ~w-k~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vk 399 (463)
T KOG0270|consen 325 EW-KFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVK 399 (463)
T ss_pred eE-EeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEE
Confidence 22 2457799999988765 67888899999999999987 677899999999999999987765544332 488899
Q ss_pred EEeCCCCce--eeeeccccCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCeeE
Q 001176 568 EWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 568 ~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+|++..... +..-.-.-. ...|.++.|+-.+ ++.||..+.+++||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999874332 221111111 4667777887655 455778888999999876544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=177.55 Aligned_cols=285 Identities=12% Similarity=0.162 Sum_probs=215.0
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe-EEEEeCCCeEEEEEecCCCc-eee
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM-LGVAFSKHIVHLYTYNPTGE-LRQ 442 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-las~~~dg~i~iwd~~~~~~-~~~ 442 (1132)
...++|||+...+.... + . -......+.++.|+....+ +|+.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~--~---------~------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE--Y---------V------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc--c---------c------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 35899999876543321 0 0 0012234899999887652 33445688899997655311 111
Q ss_pred eeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001176 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~ 522 (1132)
...+.+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 333444444445 89999999999999999877888899999999999986544 89999999999999
Q ss_pred EEcCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-CEE
Q 001176 523 WLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 600 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 600 (1132)
-.+.++.....+... +..|.-+.|++..+.+++... .+|.|.+||+....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999888777777666 446779999999888775543 388999999998888777765555488889999976 456
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccC
Q 001176 601 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 678 (1132)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1132)
++.|.|.+|++||....+....+... .+...++|+++|.+|+.|...|.|..||++..+..+..+..|...+..+
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence 77899999999999987777766542 2688999999999999999999999999998888888888888776654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=173.00 Aligned_cols=537 Identities=13% Similarity=0.171 Sum_probs=307.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC----
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG---- 417 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---- 417 (1132)
+...-.+++|+|.| ++|-|+. ..|.+-|..+-+.+.. +.-|...|+.+.|+|-.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 44557889999999 6787774 6888999888776654 55689999999998731
Q ss_pred --------CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 418 --------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 418 --------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
-+||++...|.|.+||...+..+. .+..|..++.+++|-+ +.+. +|+.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 267888889999999999876544 5778899999999976 3334 566666678999999999998
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC------CceEEecCC-CC--------------------
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL------GSRVDYDAP-GN-------------------- 539 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~-~~-------------------- 539 (1132)
............++.+.|-...++.+ -+..|.+.+.+.-.. +....+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 88777666667778888775544444 444566555543211 111111111 00
Q ss_pred -----eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEE
Q 001176 540 -----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFW 612 (1132)
Q Consensus 540 -----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw 612 (1132)
....++|+|.-+.++.... ...+.++|++-..++....-... .+.-+.+-|++ ..+++...||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0113456776555444443 44599999998777776655444 44456666665 678889999999999
Q ss_pred ECCCCeeE----------------EEEeCCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCcceeeeecccccccc
Q 001176 613 DMDNMNML----------------TTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675 (1132)
Q Consensus 613 d~~~~~~~----------------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 675 (1132)
-.+..... ..+..-... .....+..|. ...++.--.+|.+.+|.+.+| +..........+
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~-ri~~~~~s~~ie- 378 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNG-RIHLDYRSSSIE- 378 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcC-CcCccccccccc-
Confidence 76542211 111111111 1122222332 344444455677777777665 211110000000
Q ss_pred ccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCC
Q 001176 676 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 755 (1132)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~ 755 (1132)
T Consensus 379 -------------------------------------------------------------------------------- 378 (1062)
T KOG1912|consen 379 -------------------------------------------------------------------------------- 378 (1062)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEecCCcccccceEEEEEecC-----CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccC
Q 001176 756 SQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 830 (1132)
Q Consensus 756 ~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 830 (1132)
-+..+.|+.+ ...++..+.||. .+.|...... ++..........
T Consensus 379 ---------------l~~pf~f~~~~~~v~k~~l~~LS~dg~-----------h~sGs~~~~~-----~p~p~~t~~~~~ 427 (1062)
T KOG1912|consen 379 ---------------LVLPFDFNLSTKLVGKTSLISLSDDGS-----------HSSGSTCVRM-----RPMPELTKVEND 427 (1062)
T ss_pred ---------------ccccccccCceeehhhccccchhhcCC-----------CCCCceeeec-----ccCcccceeecC
Confidence 0000000000 001111122210 0000000000 000000000000
Q ss_pred CCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe---------CC
Q 001176 831 NESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---------ED 900 (1132)
Q Consensus 831 ~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~---------~d 900 (1132)
++ +....+. -.++|.|. .|+|.++|+.++...+.+..|...|.++.|.. ..+++-.+. .-
T Consensus 428 p~-----~n~~~~~----~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vr 497 (1062)
T KOG1912|consen 428 PG-----GNTPAGT----VPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVR 497 (1062)
T ss_pred CC-----CCcccee----eeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeecccccccccee
Confidence 01 0000111 13677887 79999999999999999999999999999986 444443222 22
Q ss_pred CcEEEEEcccceee--eee-ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeE
Q 001176 901 SSVQIYNVRVDEVK--TKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 901 g~v~iwd~~~~~~~--~~l-~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
+.+.|-|+.+|... +.+ +....+|..+..|..|++|+..-.|.-+.+||+++......+-..- .-++.+
T Consensus 498 N~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~--------P~it~l 569 (1062)
T KOG1912|consen 498 NDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL--------PLITVL 569 (1062)
T ss_pred eeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC--------CcEEEE
Confidence 35778889888432 222 2356689999999999999999999999999998755332211110 125667
Q ss_pred EEC-CCCc---------------EEEEEeCCeEEEEeCC--CCceeecCC---C-CCCCCCeEEEEEccCCCEEEEEecC
Q 001176 978 QFH-NDQT---------------HLLVVHESQISVYDSK--LECSRSWSP---K-DALPAPISSAIYSCDGLLVYAGFCD 1035 (1132)
Q Consensus 978 ~~s-~dg~---------------~l~~~~d~~v~vwd~~--~~~~~~~~~---~-~~h~~~i~~i~~s~dg~~las~~~d 1035 (1132)
.|+ |.-. ..++......+++.+. +........ . ......+-.|+| .+..|+.|..+
T Consensus 570 eWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~ 647 (1062)
T KOG1912|consen 570 EWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVE 647 (1062)
T ss_pred eecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeeccc
Confidence 776 3211 1111111223333331 111000000 0 000112233555 56689999999
Q ss_pred CcEEEEeCC
Q 001176 1036 GAIGVFDAE 1044 (1132)
Q Consensus 1036 g~i~vwd~~ 1044 (1132)
|.+.+||+.
T Consensus 648 GNl~~WDlg 656 (1062)
T KOG1912|consen 648 GNLVVWDLG 656 (1062)
T ss_pred CceeEEecc
Confidence 999999965
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-18 Score=170.09 Aligned_cols=218 Identities=17% Similarity=0.251 Sum_probs=174.9
Q ss_pred eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eEEEEecCCCCCeEEEEeeccCCccEEEEE
Q 001176 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFST 514 (1132)
Q Consensus 442 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 514 (1132)
....+.||+++|..++|+|-+.+ .|+|||.|.+|.||.+..+ +++..+.+|...|..++|+|... +.|+++
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsa 150 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSA 150 (472)
T ss_pred CCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhc
Confidence 33456799999999999998776 8999999999999998764 34678899999999999999865 799999
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 594 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1132)
+.|.+|.+|++.+++....+. |...|+++.|+.||.+|++.+. |..|++||.++++.+..-.+|.+..-..+.|-
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL 225 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence 999999999999999999888 9999999999999999999875 77799999999999998888876555567788
Q ss_pred CCCCEEEEEE----cCCeEEEEECCCCeeEEEE-eCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeec
Q 001176 595 TTRNRFLAAG----DEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 595 ~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1132)
.++. +++.| .+..+-+||..+.+.-..+ .... ...|.---|.+|.++++.++ .|+.||.|.+.+....+..+
T Consensus 226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred ccCc-eeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 8888 55543 6788999998764432222 2222 22455556778888776555 59999999998874334333
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=169.63 Aligned_cols=271 Identities=15% Similarity=0.195 Sum_probs=188.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|...|.|+.|+.... ++.+++ |..+.+|.-.+.+....-.. .+ ..++. ..|-++- +..=-...+.++
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~-----p~--df~pt---~~h~~~r-s~~~g~~~d~~~ 79 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKL-----PD--DFVPT---DMHLGGR-SSGGGKGSDTLL 79 (737)
T ss_pred cceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhC-----Cc--ccCCc---ccccccc-ccCCCCCcceEE
Confidence 666788999999887 566655 55555554433322211000 00 00000 0010000 000001234788
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
.++.||.+.|.+-... . ...+.+|.+.|.+-.|+|||. -|+|.+.||.|++|. ++|....++.....+|.|++
T Consensus 80 i~s~DGkf~il~k~~r-V---E~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 80 ICSNDGRFVILNKSAR-V---ERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEcCCceEEEecccch-h---hhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 8899999998875542 1 124678999999999999999 799999999999999 78877667766788999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
|.|+.+ +.+.+.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-...+||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 998865 4555544 44555556666778889999999999999999999999985 7889999965 66666666
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.|.- +|++++|.|+ ..++.++. .+++ +.. ...+.|..++|++||..+++|+..|.+.+=
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 6665 8999999999 55555543 2333 211 123478999999999999999999887653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=159.81 Aligned_cols=379 Identities=13% Similarity=0.149 Sum_probs=247.7
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCeeEE
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 621 (1132)
-.+|||+|++++++. +-++.+-|..+-+..+.|..-. .|..+.|..|..++++ ...++.|.+|++...+--.
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 4468888988877766666543 4667889988877776 4688899999999888888
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
.+... ...+.++.|+|||+.+. +...+-.|.+|.+.+..-..-..
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------- 131 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------- 131 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--------------------------------
Confidence 77654 44789999999996554 55568899999987752111000
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
....+..++|+||
T Consensus 132 -------------------------------------------------------------------pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 132 -------------------------------------------------------------------PKTNVKGYAFHPD 144 (447)
T ss_pred -------------------------------------------------------------------cccCceeEEECCC
Confidence 1123477899999
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee---C
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 857 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s---d 857 (1132)
|++.+..+.-...-.+.+. ..+-|. ++.. +.. . .-..+.+.|+|||..+|+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~-----ll~~-f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWI-----LLKE-FKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHH-----HHHh-cCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9987766543111111000 001111 1111 111 1 45567899999999998764 3
Q ss_pred CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC--------------
Q 001176 858 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 923 (1132)
Q Consensus 858 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------- 923 (1132)
-+|..|.. .-.+..++|+| .+++|++|+.|+.+||.+--+.+....+- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 44444432 23577899999 89999999999999998766655544331 2111
Q ss_pred ------eeEEEEcCCCCEEEEEcCCCcEEEEECCCcc------cccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC
Q 001176 924 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKWE------KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 991 (1132)
Q Consensus 924 ------V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 991 (1132)
..|+.|.|.. -...+|...... ......++.......|.-++..++||+|..++++-+|
T Consensus 268 ~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 2244444321 122333322110 0011112222223333467788999999999999554
Q ss_pred ---CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCC
Q 001176 992 ---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1068 (1132)
Q Consensus 992 ---~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1132)
+.+-+||+....+...... ..+|.+..|.|....|+.+.....+++|.......++.- ..+-
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP------------~~GF 403 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP------------KKGF 403 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC------------CCCc
Confidence 5799999944444433333 578999999999989998888888999998864443321 2335
Q ss_pred CcEEEEeCCCCCCeEEEEeCCCc
Q 001176 1069 HPLVIAPHPSEPNQIALGMSDGA 1091 (1132)
Q Consensus 1069 ~v~~~~~~p~~~~~l~s~~~Dg~ 1091 (1132)
.+..+.|.- +|..|+-.+.|.-
T Consensus 404 ~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecC-CCcEEEEEcCCce
Confidence 677899988 7788888888863
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=159.62 Aligned_cols=270 Identities=15% Similarity=0.234 Sum_probs=196.9
Q ss_pred ceeeecCCCCCCceeccCC---------------------cccceEEeecCCCCeeEEEEc-------cCCCeEEEEEcC
Q 001176 313 DEVSFAGVAHTPNVYSQDD---------------------LTKTVVRTLNQGSNVMSMDFH-------PQQQTILLVGTN 364 (1132)
Q Consensus 313 ~~~~~~~~g~~~~~~~~d~---------------------~~~~~~~~l~h~~~V~~~~~s-------pdg~~lla~g~~ 364 (1132)
..+.|+|||..+.+-+.|. .+............|...+|= |+.. ++|+.+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVSSR 131 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeeeccc
Confidence 3467888888776665543 111222223356678887775 6676 7888899
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEe-cCCCceeee
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY-NPTGELRQH 443 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~-~~~~~~~~~ 443 (1132)
+.-|.+||.-+|+... +++.||..+ .-..-.+++|||||.+|.+| .+.+|+++|+ +.|......
T Consensus 132 ~~PIh~wdaftG~lra--Sy~~ydh~d------------e~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRA--SYRAYDHQD------------EYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred cCceeeeecccccccc--chhhhhhHH------------hhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcch
Confidence 9999999999998765 344343211 11234589999999999887 6778999999 444432222
Q ss_pred eee----ecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC
Q 001176 444 LEI----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG 518 (1132)
Q Consensus 444 ~~l----~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg 518 (1132)
.++ .+..+-|.|++|+|-... .++.|+.-.++-|+.-..++++..+-+|.+.|+.++|.+++ +.|++|+. |-
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~-~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG--n~lfsGaRk~d 273 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSK-TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG--NKLFSGARKDD 273 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCc-ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc--CeecccccCCC
Confidence 111 234778999999997765 78999999999999988999999999999999999998865 67777765 78
Q ss_pred eEEEEEcCCCCceE-EecCCCC---eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEE
Q 001176 519 KIKAWLYDYLGSRV-DYDAPGN---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQF 593 (1132)
Q Consensus 519 ~i~~wd~~~~~~~~-~~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~ 593 (1132)
.|..||++..+... .+..|.. .-.-....|++++|++++. +|.|++||+++ |..+..+..+.. .++.+++
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t----dG~V~vwdlk~~gn~~sv~~~~sd-~vNgvsl 348 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT----DGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSL 348 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC----CccEEEEecCCCCCcccccccccc-cccceec
Confidence 89999998765433 3333332 2223445789999999854 88899999998 777777777776 7999999
Q ss_pred eCCCCEEEEEEcC
Q 001176 594 DTTRNRFLAAGDE 606 (1132)
Q Consensus 594 ~~~~~~l~~~~~d 606 (1132)
+|--..+++++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9997777776644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=166.04 Aligned_cols=563 Identities=15% Similarity=0.152 Sum_probs=320.7
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCC----------CcEEEEEEcCCCc
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDKM 475 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~----------~~~~l~s~~~dg~ 475 (1132)
..-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. ..++|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346678899876 6777754 458888887766554 677899999999998742 3468899999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-CCE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTR 552 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 552 (1132)
|.+||...+..+..+..|..++..++|.+..+. .+|++-....++.+|+..+++.............|+.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999887654 57788888899999999999998888777777778888873 344
Q ss_pred EEEEecCCCCCCeEEEEeCC-------CCceeeeeccccC----------------Cc--------eEEEEEeCCCCEEE
Q 001176 553 LFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRK----------------RS--------LGVVQFDTTRNRFL 601 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l~ 601 (1132)
+..-+. .|.+.+-+.- .|+..+.-..|.+ .+ ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 433332 3333333321 1222221111111 00 01256788766666
Q ss_pred EEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC--CCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCC
Q 001176 602 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 679 (1132)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1132)
.......+.++|++-..++.......+ .+.-+.+-|+ ...|++.-.||.+.+|--......++.-..+-..
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~----- 319 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSM----- 319 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcc-----
Confidence 666788899999999999988887765 4555666665 4579999999999999754321111111000000
Q ss_pred CCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcce
Q 001176 680 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 759 (1132)
Q Consensus 680 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 759 (1132)
+ -...+.+-..-
T Consensus 320 ----------------------------d-------------------------------l~~Q~~~vr~m--------- 331 (1062)
T KOG1912|consen 320 ----------------------------D-------------------------------LGEQVHVVRPM--------- 331 (1062)
T ss_pred ----------------------------c-------------------------------cccceEEEeec---------
Confidence 0 00000000000
Q ss_pred EEecCCcccccceEEEEEecC-CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCC
Q 001176 760 ALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 838 (1132)
Q Consensus 760 ~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~ 838 (1132)
....+...+..|. ...++..-++|.+.+|.+..+....+.......-..-+|....... -.
T Consensus 332 --------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~----------v~ 393 (1062)
T KOG1912|consen 332 --------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL----------VG 393 (1062)
T ss_pred --------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee----------hh
Confidence 1111222223333 2223344445556666554322222111100000000000000000 00
Q ss_pred CeeEEEEeeCCCEEEEeeCCe--EEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 839 SAACIALSKNDSYVMSASGGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
.-.-+.+|.||. -+.|. +++--+.... .+.....+. +....-| ++|.|+..|+|.++|+.++...+.
T Consensus 394 k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t--~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~ 462 (1062)
T KOG1912|consen 394 KTSLISLSDDGS----HSSGSTCVRMRPMPELT--KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAAS 462 (1062)
T ss_pred hccccchhhcCC----CCCCceeeecccCcccc--eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhh
Confidence 000111222220 00111 1110011001 111111111 1112223 889999999999999999999999
Q ss_pred eccccCCeeEEEEcCCCCEEEEE----------cCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSS----------GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~----------~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
+..|.+.|.++.|..... |++. +.-+.+.+-|+.+|.....+-++.... .+|..+..|..|+||
T Consensus 463 fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yL 536 (1062)
T KOG1912|consen 463 FSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYL 536 (1062)
T ss_pred hcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceE
Confidence 999999999999965443 3332 233457788898876433222222221 679999999999999
Q ss_pred EEE-eCCeEEEEeC-CCCceeecCCCCCCCCC-eEEEEEc-cCCC----------------EEEEEecCCcEEEEeCCCc
Q 001176 987 LVV-HESQISVYDS-KLECSRSWSPKDALPAP-ISSAIYS-CDGL----------------LVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 987 ~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~-i~~i~~s-~dg~----------------~las~~~dg~i~vwd~~~~ 1046 (1132)
++. .+.-+.+||+ +..+++.... .-+ |+.+.|+ |.-. ..++.+.| .+++.+...
T Consensus 537 ai~Fr~~plEiwd~kt~~~lr~mS~----a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~e--s~~~~~~~~ 610 (1062)
T KOG1912|consen 537 AILFRREPLEIWDLKTLRMLRLMSL----ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVE--SRIYHITLS 610 (1062)
T ss_pred EEEecccchHHHhhccchHHHHHhh----cCCcEEEEeecccCCCCcccccchhhhhhhhceeeecccc--chheehhhh
Confidence 995 7888999999 4444443322 344 8999998 4322 23333322 223322111
Q ss_pred ce-ecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCC
Q 001176 1047 RF-RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1100 (1132)
Q Consensus 1047 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~ 1100 (1132)
.. ...... -......-......++| .+..++.|..+|.+.+||+..-
T Consensus 611 a~~~sdgsq----~~~a~esfafal~~mAw---k~d~lv~GD~~GNl~~WDlg~R 658 (1062)
T KOG1912|consen 611 ALVVSDGSQ----VNTAWESFAFALCAMAW---KDDILVVGDVEGNLVVWDLGRR 658 (1062)
T ss_pred hhhhccccc----hhhHHHHHHHHHHhhhc---cCCeeEeecccCceeEEecccc
Confidence 11 000000 00001111223345778 4579999999999999997543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=161.55 Aligned_cols=294 Identities=11% Similarity=0.125 Sum_probs=211.4
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|.+-|.++.||.+++ +|++|+.|..+++|++..--.... - .|++. .-..|...|.|++|....++|
T Consensus 54 ~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~--~---------KPI~~-~~~~H~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT--P---------KPIGV-MEHPHRSNIFSLEFDLENRFL 120 (609)
T ss_pred hhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC--C---------CCcee-ccCccccceEEEEEccCCeeE
Confidence 4889999999999998 799999999999999874322111 0 01110 123467899999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-E--EEEecCCCCCe
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-K--QYTFEGHEAPV 497 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-~--~~~~~~h~~~v 497 (1132)
.+|+.+++|...|+++.+.+.... -....+.|..+..+|... .+++.+.++.|.+||.+... . ...+.......
T Consensus 121 ~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred ecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 999999999999999987665221 112344899999999977 89999999999999988654 2 12223344556
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.++-|+|... .+|++.+..+-+-+||.+....... +......-..+.|+|+|+.+++.-. ...-.+||
T Consensus 198 ~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~~D 272 (609)
T KOG4227|consen 198 YTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLYFD 272 (609)
T ss_pred eeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEEee
Confidence 7788888765 7889999999999999987654321 1111223367889999999987643 22345678
Q ss_pred CCCCce-eeeecccc-----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-----------------------eEE
Q 001176 571 ESEGAI-KRTYSGFR-----KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-----------------------MLT 621 (1132)
Q Consensus 571 ~~~~~~-~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~ 621 (1132)
+-+.++ +..+.... ...+.+++|..+. .+++|+.+-.|++|.+.... .+.
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 766443 23332111 1146677887664 48899999999999875311 234
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+.+|.. -++.+.|+|...+|++.+-...+++|.-
T Consensus 352 VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 352 VLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEecccc--cccceeecCCcceEeccchhhheecccc
Confidence 4555544 6899999999999999999999999964
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=171.02 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=165.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+.+.... .||...|.++.|-|.....+++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 378999999999999999999999999999999998766665433 489999999999997666589999999999999
Q ss_pred ECCCC----------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eE---------EecCCCC
Q 001176 480 DVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RV---------DYDAPGN 539 (1132)
Q Consensus 480 d~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~---------~~~~~~~ 539 (1132)
|+... ...+.+..|...|..++..|.+. +.+.+++.||+|+-+|++.... .. .+....-
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99842 23445667889999998877654 7899999999999999986321 11 1111122
Q ss_pred eEEEEEEcCCCC-EEEEEecCCCCCCeEEEEeCCCCceeeeeccccC---C---ceEEE-EEeCCCCEEEEEEcCCeEEE
Q 001176 540 WCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---R---SLGVV-QFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 540 ~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~---~v~~~-~~~~~~~~l~~~~~dg~i~i 611 (1132)
...++..+|... +|++|+. +...++||.+.. +..+..... . ...|+ -|+|.+- ...+|
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~g---- 267 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQG---- 267 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccc----cCccc----
Confidence 567899999765 4555553 778999996421 122211110 0 01111 1222210 00111
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 612 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
..... ...++-++|+|+|.-|++.-....|+++|+..++.....+
T Consensus 268 ------n~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 268 ------NLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ------ccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 11100 1135678999999877777777799999998885554444
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=152.83 Aligned_cols=291 Identities=15% Similarity=0.260 Sum_probs=210.1
Q ss_pred ceEEeecCCCCeeEEEEc--cCCCeEEEEEcC----CCcEEEEecC--CCccccccceeeeecccccccccccccCCCCc
Q 001176 335 TVVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAI 406 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~s--pdg~~lla~g~~----dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 406 (1132)
+.+.+....-.++++.|| |+.+..||.|+. .+.|.|-.+. +++.+... -..|.-
T Consensus 36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~Y 97 (364)
T KOG0290|consen 36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPY 97 (364)
T ss_pred ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCC
Confidence 335566666789999999 566667999873 3566665553 33333221 235999
Q ss_pred CeEEEEEcCCCC-----eEEEEeCCCeEEEEEecCCC-ceeeeee-----eecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 407 SVNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 407 ~V~~v~~spdg~-----~las~~~dg~i~iwd~~~~~-~~~~~~~-----l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+++.+.|.||.+ +||+++ -.+|+|.+...+ .+..... -..+..++++..|+.-..+ +|.+++-|-+
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTT 174 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTT 174 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCe
Confidence 999999999863 666653 359999988422 1211111 1235679999999886665 8999999999
Q ss_pred EEEEECCCCeE---EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCC--CCeEEEEEEcCC
Q 001176 476 IKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAP--GNWCTMMAYSAD 549 (1132)
Q Consensus 476 v~vwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~--~~~v~~~~~s~~ 549 (1132)
..|||+++|.. ...+-+|...|..|+|.. +..+.+++.+.||.+|+||++..+.-.. +... ..+...++|+++
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999998733 456778999999999986 3448999999999999999998665332 2222 347788999885
Q ss_pred C-CEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCee------E
Q 001176 550 G-TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------L 620 (1132)
Q Consensus 550 ~-~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~ 620 (1132)
. +++++... ....|.+.|++. ..++..+.+|.. .|+.++|.|.. ..++++|.|..+.+||+...-. +
T Consensus 254 DpnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 254 DPNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CchHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 5 56665554 245699999986 567888999988 89999999975 6888999999999999976322 1
Q ss_pred EEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001176 621 TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1132)
.... ....|+.+.|++ .+..++.+... .+.+
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 1222 234799999997 67788777543 4443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-16 Score=145.89 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=193.2
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCC---ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
.|.+-++||.++ +|++|+.+|+|.+..+.+- +....... ++. ...+|.++|+.++|. ..+|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~----------~iv--~eqahdgpiy~~~f~--d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKL----------KIV--PEQAHDGPIYYLAFH--DDFLL 76 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCc----------cee--eccccCCCeeeeeee--hhhee
Confidence 577788999998 6999999999999998642 11111011 111 146899999999997 45777
Q ss_pred EEeCCCeEEEEEecCCCcee---eee--eeeccc-----CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 422 VAFSKHIVHLYTYNPTGELR---QHL--EIDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~---~~~--~l~~h~-----~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+|+ ||.|+-|..+...... ... ...-|. -.|+++...|... -+++++.|+.++-||+++|+..++++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence 775 5999999887543210 000 111222 2688999998877 46666679999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----------CCeEEEEEEcCCCCEEEEEecCCC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
||.+-|.++.-.... ..+++|+.||++|+||.++.+....+... +.+|.+++. +..++++++
T Consensus 154 GHtDYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg---- 225 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG---- 225 (325)
T ss_pred CCcceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC----
Confidence 999999999863332 57999999999999999999887755432 225555554 556888875
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
...+.+|++++.++...|.-.. .+..+.|.. +.++++|+.+.|.-|.+. |.....++.... ...+..|+...
T Consensus 226 -Gp~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p 297 (325)
T KOG0649|consen 226 -GPKLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSP 297 (325)
T ss_pred -CCceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCc
Confidence 4459999999988888776433 466677764 568888888899999875 344333333222 34555554433
Q ss_pred -CEEEEEeCCCcEEEE
Q 001176 642 -SLLAVTTSDNGIKIL 656 (1132)
Q Consensus 642 -~~l~~~~~dg~i~iw 656 (1132)
+++-.++..+.+.++
T Consensus 298 ~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEEecccceeeeee
Confidence 344455556666554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=176.86 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=190.2
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec-----CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+..|...|..++|.|....|++|+.||+|.+|++. +...+.+..++.+|.++|.|++..+++. .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2344677889999999999999999999 8999999999
Q ss_pred EEEEECCCC----------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCeEEE
Q 001176 476 IKVWDVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTM 543 (1132)
Q Consensus 476 v~vwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~ 543 (1132)
|+.|++... .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.. ..+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999965421 2335678999999999998877 6799999999999998876554 22222 2223334
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 544 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
+.+......+..++. ..+.-.+++...+..+..+..... ..+..+.++|.+...+++.+|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 444332211111111 122223344444444444432211 24667888999999999999999999999999
Q ss_pred eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 618 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+.....|.. .++++++.|+|.+|++++.||.+++|.+...
T Consensus 522 ~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 KILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 99998887744 8999999999999999999999999998655
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-16 Score=144.62 Aligned_cols=288 Identities=13% Similarity=0.129 Sum_probs=194.5
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 850 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~ 850 (1132)
.|.+-+++|.+++++++..+|.|.++.+....... . ...|+........ | +++++.++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk~~iv~eqa--h-dgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGKLKIVPEQA--H-DGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCCcceeeccc--c-CCCeeeeeee--hh
Confidence 45566789999999999999999999876421100 0 1122222222333 7 9999999997 56
Q ss_pred EEEEeeCCeEEEEECCCCeE------EEEe-------eCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee
Q 001176 851 YVMSASGGKVSLFNMMTFKV------MTMF-------MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917 (1132)
Q Consensus 851 ~la~~sdg~i~vwd~~~~~~------~~~~-------~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 917 (1132)
+|++++||.|+-|....... +... ...-.+|+++-..|..+. +++++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE
Confidence 88899999999988653211 1111 112356899999994444 445669999999999999999999
Q ss_pred ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEE
Q 001176 918 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 997 (1132)
Q Consensus 918 ~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vw 997 (1132)
+||.+.|-++.--.....++||+.||++++||.++++...............|...-.-.+..-+..+++++....+.+|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEE
Confidence 99999999998855556799999999999999999886543222111111111112222466677889999999999999
Q ss_pred eC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeC
Q 001176 998 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076 (1132)
Q Consensus 998 d~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1076 (1132)
.+ ..++...+.. .+++..+.|-. ..++++++.+.|.-|.+. |.....+... .| ..+...|.
T Consensus 233 hLrsse~t~vfpi----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~---------s~--~c~s~s~~ 294 (325)
T KOG0649|consen 233 HLRSSESTCVFPI----PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVE---------ST--ACYSASWQ 294 (325)
T ss_pred eccCCCceEEEec----ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCC---------cc--ceeeeccc
Confidence 99 5555555543 56788888854 467888888899999987 5554444322 22 22223332
Q ss_pred CCCCCeEEEEeCCCcEEEE
Q 001176 1077 PSEPNQIALGMSDGAVHVV 1095 (1132)
Q Consensus 1077 p~~~~~l~s~~~Dg~i~vW 1095 (1132)
.+--++|-.++..+++.+.
T Consensus 295 ~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 295 TSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCceEEEEecccceeeeee
Confidence 2113456666666766654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=175.30 Aligned_cols=267 Identities=13% Similarity=0.211 Sum_probs=191.9
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
++. |.+.|.+++|.|... .|++++.||++.+|+++....-....+ .+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCc
Confidence 555 999999999999988 699999999999999943211111111 1112367899999999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCc-------eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGE-------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~-------~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
..+.+|+.||+|+.|++..... ......+.||.+.|+.+++++... .|++|+.||+++.|+.....+ .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999996653211 112235789999999999999888 799999999999999776655 444
Q ss_pred cCCC--CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEecCCC
Q 001176 491 EGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 491 ~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
.... +--.++.+..... ...++...-+.--++++........+... ...+..+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 3321 2223444322211 12222222222223333333333322211 125677888999988888864
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....|
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 78899999999999999999888 8999999999999999999999999999877776665544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=156.28 Aligned_cols=250 Identities=16% Similarity=0.199 Sum_probs=191.4
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccC-CCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~ 413 (1132)
+...|. |.+.|+|+.|-.+++ |.+|...|.|++|++.+...+.. +. .|...|+.+.-
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQS 64 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceee
Confidence 444555 889999999999986 78899999999999998765432 22 36778888888
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceee------------------------eee------------------------
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQ------------------------HLE------------------------ 445 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~------------------------~~~------------------------ 445 (1132)
-|+ ..+.+-+.|+.+.+|++..+..+.. ...
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 887 5677778999999999875211100 000
Q ss_pred --eecccCCEEEEEEe-cCCCcEEEEEEcCCCcEEEEECCCCe----------EEEEecCCCCCeEEEEeeccCCccEEE
Q 001176 446 --IDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIF 512 (1132)
Q Consensus 446 --l~~h~~~v~~v~~s-~d~~~~~l~s~~~dg~v~vwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~ 512 (1132)
-.+..+.+.|..+. .++++++++.|.++|.|.+||+.++. .......|.++|.++.+.+.. ..=+
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGi 221 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGI 221 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--cCCc
Confidence 00112344454432 34566688899999999999999983 333445799999999987654 3457
Q ss_pred EEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 513 STAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
+|+.+..+..|.++.... ...+......|..+..-||++.++++|. |++|++|+.++..++..++.|.. .|
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW----D~RiRVyswrtl~pLAVLkyHsa-gv 296 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW----DHRIRVYSWRTLNPLAVLKYHSA-GV 296 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc----CCcEEEEEeccCCchhhhhhhhc-ce
Confidence 788888899998865422 2244445567888999999999999997 88899999999999999999986 89
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEC
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1132)
.+++|+|+.+.+++++.|+.|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=160.56 Aligned_cols=291 Identities=12% Similarity=0.136 Sum_probs=204.9
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCC-CeEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPG-NWCT 542 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~-~~v~ 542 (1132)
.++++-..|+|++||..+++.+..|+++...++.+.|........+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 678888899999999999999999999999999999987545588999999999999999987765543 3333 3667
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce-eeeec-cccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCe-
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYS-GFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN- 618 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~- 618 (1132)
+++....++.++++..-...+..+.+||++..+. ++.+. .|.+ .|+++.|+|.. +.|++|+.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777777888887765445577899999998766 66654 4555 89999999976 788999999999999997643
Q ss_pred ---eEEEEeCCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccC
Q 001176 619 ---MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 694 (1132)
Q Consensus 619 ---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 694 (1132)
++.++. ....|.++.|..++ +.|.+-+..++..+|+++.+.. ...+........
T Consensus 201 eDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~------------------ 258 (376)
T KOG1188|consen 201 EDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSAD------------------ 258 (376)
T ss_pred hhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhh------------------
Confidence 222232 12368899999877 4588888999999999998842 222211100000
Q ss_pred CCccccccccCCCCCCCCCCCCcccCccCcCCcc-cccccccccccc-cCceeeeecCCCCCCCcceEEecCCcccccce
Q 001176 695 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS-RLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKV 772 (1132)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i 772 (1132)
..+.-. ...+-.+.. ....+-..+.+. -++..++.+..............+..+|..-|
T Consensus 259 --------d~r~~~-----------~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV 319 (376)
T KOG1188|consen 259 --------DLRKED-----------NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV 319 (376)
T ss_pred --------hHHhhh-----------hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH
Confidence 000000 000011111 111122344444 37777777765444444444455556688889
Q ss_pred EEEEEecCCceEEeecccceeEEEee
Q 001176 773 VRLIYTNSGLSLLALASNAVHKLWKW 798 (1132)
Q Consensus 773 ~~~~~s~~g~~l~~~~~dg~i~vw~~ 798 (1132)
+++.|...+..+.+|+.||.+.+|..
T Consensus 320 R~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 320 RDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHhhhcccceeeccCCCceEEEEec
Confidence 99999999999999999999999974
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=158.73 Aligned_cols=275 Identities=12% Similarity=0.152 Sum_probs=195.3
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCeEEEEeCCCeEEEEEec
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYN 435 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~las~~~dg~i~iwd~~ 435 (1132)
.+|++-..|.|++||..+++.+.. ++++...++.+.|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678888899999999999887764 678888999999987 46689999999999999999
Q ss_pred CCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEc----CCCcEEEEECCCCeE-EEEe-cCCCCCeEEEEeeccCCc
Q 001176 436 PTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKESI 508 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~----~dg~v~vwd~~~~~~-~~~~-~~h~~~v~~i~~~~~~~~ 508 (1132)
........ ...+|. .+..|++..-.+. .+++|. .|-.|.+||++..+. +..+ ..|.+.|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87665433 344555 4666666655555 666664 466899999998776 5544 46999999999999866
Q ss_pred cEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
++|++||.||.|.+||+..... +.....+...|.++.|..++ +.+.+-+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 8999999999999999976533 22334466789999998887 34555543 5669999999887655543321
Q ss_pred CC---------ceEEEE-EeC-CCCEEEEEEc-CCeEEEEECC---CC---eeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 585 KR---------SLGVVQ-FDT-TRNRFLAAGD-EFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 585 ~~---------~v~~~~-~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
-. .-+-+. .+| +...++.++. -++..++-+. ++ +.+..+.+ ++...|.++.|...+.++++
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 000111 223 3345555443 5555555443 22 23333333 23446888999989999999
Q ss_pred EeCCCcEEEEEcCC
Q 001176 647 TTSDNGIKILANSD 660 (1132)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (1132)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-18 Score=184.29 Aligned_cols=277 Identities=16% Similarity=0.273 Sum_probs=214.3
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|...|+|+.|...|+ ++++|+.|..|+||...++.++.. +.||++.|+.++.+.+..++
T Consensus 188 gH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~~i 247 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNTMI 247 (1113)
T ss_pred hhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhhhh
Confidence 3889999999999998 699999999999999999988875 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE---ecC-CCCC
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEG-HEAP 496 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~-h~~~ 496 (1132)
|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+=.-.+.. ++. ...-
T Consensus 248 aaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~ 318 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDL 318 (1113)
T ss_pred hhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccc
Confidence 999999999999999988665 68899999999999984 3678899999999871111111 111 1234
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCeEEEEeCCCCc
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
+.++.|. .++..++|++.|+.-..|.+..... +...+.-+..+.+-. +.+++- .+..+.+|++.+|.
T Consensus 319 ~~s~~~~--~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 319 VDSILFE--NNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTGQ 386 (1113)
T ss_pred eeeeecc--ccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecccch
Confidence 5555553 3457789999999988886543211 111122222222322 222322 36678999999999
Q ss_pred eeeeeccccCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
+.+.+.+|.. .+..+.++|-...+ .+++.||...|||+-.|.++...... ...+....|++||..++...+-|.+.
T Consensus 387 l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~ 463 (1113)
T KOG0644|consen 387 LLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLY 463 (1113)
T ss_pred hhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceE
Confidence 9999999988 88999999977655 45889999999999998888776633 23678889999999999988889999
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
|.....+
T Consensus 464 i~g~gqs 470 (1113)
T KOG0644|consen 464 ILGTGQS 470 (1113)
T ss_pred EeccCCC
Confidence 9876554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=169.94 Aligned_cols=299 Identities=17% Similarity=0.253 Sum_probs=233.9
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
....|. |.+-|..|.|...|. +|++|+.|..|.+||+..+..... ...||...|..-.|-
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhcc
Confidence 344566 999999999999998 799999999999999998876543 256899999999998
Q ss_pred C--CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe--
Q 001176 415 P--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 490 (1132)
Q Consensus 415 p--dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-- 490 (1132)
| +.+.+++++.||.+++=.+...+.+.....+..|.++|.-++.-|+... -|.|++.|+.+.-.|++.+.+...+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeee
Confidence 8 4568999999999999888766666555567789999999999999887 7999999999999999887654333
Q ss_pred -cCCCC---CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce------EEec------CCCCeEEEEEEcCCCCEEE
Q 001176 491 -EGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 491 -~~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~ 554 (1132)
+.+.. ...+++.+|... ..+++++.|..+++||.+.-... ..+. ...-.|++++|+.++.-|+
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred eccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 22333 567888887653 68999999999999998754332 1111 1233799999997665555
Q ss_pred EEecCCCCCCeEEEEeCCC--C----------ceee-eeccccCC-ceEEEE-EeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 555 SCGTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
+... +-.|+++.-.. | ..+. .++||... .|..+- |.|...++++|+.-|.|.||+-.+++.
T Consensus 353 aSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 353 ASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred eeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 5443 55588885432 2 2223 37888653 355554 578889999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+..+.+..+ -|+|+.-+|.-..||+++-|..|+||...+.
T Consensus 429 i~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 429 IRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 999988766 7999999999999999999999999987444
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=153.39 Aligned_cols=305 Identities=13% Similarity=0.166 Sum_probs=193.1
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..+..|.. .++++.|..++ +|++|..-|.|.+|++.+.+....+..++. ..|+.+..-|+ ..+.+-+.|+.+.+|+
T Consensus 8 fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 8 FVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEEEE
Confidence 44456665 78999998766 589999999999999999998888875443 37888888887 4678889999999999
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
+.-+ .. ...|+. ..+.+.++...+ .+.+... ...+.
T Consensus 84 ia~s-~~---i~i~Si-----~~nslgFCrfSl---------------~~~~k~~--------------------eqll~ 119 (323)
T KOG0322|consen 84 IAYS-AF---ISIHSI-----VVNSLGFCRFSL---------------VKKPKNS--------------------EQLLE 119 (323)
T ss_pred ccCc-ce---EEEeee-----ecccccccccee---------------ccCCCcc--------------------hhhee
Confidence 8764 11 111111 111111111111 1111000 00000
Q ss_pred ccccC--ceeeeecCCCCCCCcceEEecCCcccccceEEEEEec-CCc--eEEeecccceeEEEeeccccCCCCCccccc
Q 001176 738 AEDVD--KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 738 ~~~~~--~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
....+ .+.+-|.. ...+.....-+..+..+.+.+..+.. ++. .+++|..+|.+.+||+..+....
T Consensus 120 yp~rgsde~h~~D~g---~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~------- 189 (323)
T KOG0322|consen 120 YPSRGSDETHKQDGG---DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII------- 189 (323)
T ss_pred cCCcccchhhhhccC---ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-------
Confidence 00000 00000100 01111111111133445566655332 232 35677889999999987642211
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCC--CeE--EEEeeCCCCCeEEEEEe
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFH 887 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s 887 (1132)
+......+..... .| ..+|.++.|.+.-..=++|+ +..+..|++.. +.+ -.+.......|..+.+-
T Consensus 190 ------~~~~~~kv~~~~a--sh-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR 260 (323)
T KOG0322|consen 190 ------QLPQSSKVESPNA--SH-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR 260 (323)
T ss_pred ------ccccccccccchh--hc-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc
Confidence 1111111111122 26 88999999987666666666 77888888763 322 22223334568889999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
| |++++|++++||.||||..++...+..++-|.+.|.+++|+||...+|.++.|+.|.+|++
T Consensus 261 p-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 P-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9 9999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=153.74 Aligned_cols=216 Identities=19% Similarity=0.342 Sum_probs=164.4
Q ss_pred ccceEEeec--CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 333 TKTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 333 ~~~~~~~l~--h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
+.+++..|. +-+.|.|+.|.|++..+++. .|+.|.+|++..+..+.. .+. ...-.+|....++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev~------------ss~s~e~~~~fts 175 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EVL------------SSESAEMRHSFTS 175 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-eec------------ccccccccceecc
Confidence 355666676 56799999999999874444 389999999998876421 110 0011236677888
Q ss_pred EEEcC--CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEE
Q 001176 411 CVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQ 487 (1132)
Q Consensus 411 v~~sp--dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~ 487 (1132)
-+||| ||..+++. .|+++..||+++..+...+ -.+|...|.++.|+|+-+. +|+||+.||.|+|||.+. ..++
T Consensus 176 g~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred cccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccc
Confidence 89999 88888887 6889999999987765432 3478889999999999876 899999999999999985 4578
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-----------------------------CceEEecCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAPG 538 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------------------------~~~~~~~~~~ 538 (1132)
.++.+|...|+++.|+|..+ +++++++.|..|.+|...+- +.+..+..|.
T Consensus 252 ~el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred cccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 89999999999999999876 89999999999999954321 1222456677
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
..|++++||.-..++++.-. -||++.|=.+
T Consensus 331 DSVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred cceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 89999999987777654331 2666766544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-17 Score=165.88 Aligned_cols=199 Identities=22% Similarity=0.220 Sum_probs=157.1
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceee
Q 001176 882 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 961 (1132)
Q Consensus 882 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 961 (1132)
.+++|+. +|..|++|+.||++|||+.++...+.....|.+.|.+|.|||||++|++.+.| ..++|+..++.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~--- 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR--- 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh---
Confidence 7899999 89999999999999999998888888888899999999999999999999999 899999999853322
Q ss_pred eCCCCCCCCCCCceeEEECCCC---cE-EEE--EeCCeEEEEeC---CCCceeecCCCCCCCCCeEEEEEccCCCEEEEE
Q 001176 962 QAPAGRQSPLVGETKVQFHNDQ---TH-LLV--VHESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1032 (1132)
Q Consensus 962 ~~~~~~~~~~~~v~~~~~s~dg---~~-l~~--~~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~ 1032 (1132)
.... ........+.|+.|+ .+ +++ ...+.|+.||+ .+.....+...-.....|++++.|+||+++|.|
T Consensus 223 --~t~~-~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 223 --KTPF-SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred --cCCc-ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 1111 111445678888887 33 333 24567888877 221111111111225689999999999999999
Q ss_pred ecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1033 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1033 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
+.||.|.|++..+.+.+.-+. +.|...|+.+.|+| |.+++++-+.|.+..|-.+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999999999988765442 58999999999999 889999999999999988866
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-16 Score=148.59 Aligned_cols=268 Identities=15% Similarity=0.211 Sum_probs=195.7
Q ss_pred CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeEEEEeCC-------CeEEEEEec
Q 001176 364 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVAFSK-------HIVHLYTYN 435 (1132)
Q Consensus 364 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~~~d-------g~i~iwd~~ 435 (1132)
.|+.|.+-++..+.. .+....+..|.+.|..++-+| |.+.|+++..+ ..+.||.+.
T Consensus 38 ~dNqVhll~~d~e~s----------------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip 101 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGS----------------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP 101 (370)
T ss_pred CcceeEEEEecCccc----------------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc
Confidence 356777766654432 222334667899999999999 66677777542 247899987
Q ss_pred CCCc------eeeeeeee-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEec-----CCCCCeEEEEe
Q 001176 436 PTGE------LRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFE-----GHEAPVYSVCP 502 (1132)
Q Consensus 436 ~~~~------~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~-----~h~~~v~~i~~ 502 (1132)
.... +.+...+. .+-+.|.|+.|.|++. .+++-. |..|.+|++..+.. +..+. +|....++-+|
T Consensus 102 e~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 102 EPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred cccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 5422 12222333 4566899999999998 566665 88999999998766 33332 35667888899
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCeEEEEEEcCCCCEEE-EEecCCCCCCeEEEEeCCC-Cceeee
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESE-GAIKRT 579 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~-~~~~~~ 579 (1132)
+|..+|+.+++. .|+++..||+++..+...+ ..|+..|..+.|+|+-++++ +|+ .|+.|++||.+. ..++..
T Consensus 179 spHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g----DdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 179 SPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG----DDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred CCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC----CCccEEEEeccCCCccccc
Confidence 998888777665 5899999999988776654 56788999999999987654 554 388899999985 457888
Q ss_pred eccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCe-----------------------------eEEEEeCCCCC
Q 001176 580 YSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-----------------------------MLTTVDADGGL 629 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~ 629 (1132)
+.+|.. .+.++.|+|.. +.+++||.|..|.+|...+-. .+.++.. +.
T Consensus 254 l~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hE 330 (370)
T KOG1007|consen 254 LPGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HE 330 (370)
T ss_pred cCCCce-EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cc
Confidence 888877 99999999976 556778999999999764321 1122333 34
Q ss_pred CCcceEEEcC-CCCEEEEEeCCCcEEEEEc
Q 001176 630 PASPRLRFNK-EGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 630 ~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 658 (1132)
..|++++|+. |.=.+|+-+-||.+.|=.+
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 5899999998 6667788889999987554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-15 Score=169.12 Aligned_cols=250 Identities=15% Similarity=0.136 Sum_probs=186.1
Q ss_pred CCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCc--eeee-eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 404 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 404 h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~--~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
-...|.|+.|+| +..++|.|..+|.|.+||+..+.. .... .....|..+++.+.|..+-.+.-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 677888999999999999998765 2111 123468899999999876543358999999999999
Q ss_pred ECCCCeE------EEEec------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001176 480 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--------RVDYDAPGN 539 (1132)
Q Consensus 480 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------~~~~~~~~~ 539 (1132)
+++.-.. ..... .-...++++.|.+... ..++.|+.+|.|..-+...... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1234678888887654 7899999999998733322211 225667888
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1132)
.|+++.++|-+..++..+ +|.++++|... ...++..+..+.+ .+++++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999886655443 28889999987 6677777776665 699999999874 5566778999999999754
Q ss_pred e--eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 618 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 618 ~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
. ++.+.... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 34443333 336678888999999999999999999998654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=170.07 Aligned_cols=271 Identities=16% Similarity=0.209 Sum_probs=199.1
Q ss_pred ceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC
Q 001176 325 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 404 (1132)
Q Consensus 325 ~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 404 (1132)
.+|..... ..+-..+.-...|+|++|+|....++|.|..+|.|.+||+..+..... .........|
T Consensus 225 ~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh 290 (555)
T KOG1587|consen 225 LVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSH 290 (555)
T ss_pred EEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccC
Confidence 34444443 677777888899999999998888999999999999999998765211 0011124569
Q ss_pred CcCeEEEEEcCCC--CeEEEEeCCCeEEEEEecCCCceeeeeeee---------cccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 405 AISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 405 ~~~V~~v~~spdg--~~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
..+|+.+.|-.+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~ 369 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEE 369 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCC
Confidence 9999999998754 459999999999999887533211111111 11236899999987776 78999999
Q ss_pred CcEEEEECC---CCe-----EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCeEEEE
Q 001176 474 KMIKVWDVV---AGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 474 g~v~vwd~~---~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~ 544 (1132)
|.|.--+-. .+. .+..+..|.++|.++.++|-.. ..+++++ |-++++|.-. ...+...+..+...++++
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDV 447 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeee
Confidence 998873322 222 2235566899999999988764 3444444 9999999887 556666777777789999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
+|||....++.+. +.+|.|.+||+... .++.+.... ....+.+.|++.|+.+++|...|.+++|++..
T Consensus 448 aWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 448 AWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999887776665 46899999998743 344444443 32677788999999999999999999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=160.10 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=178.8
Q ss_pred EEEEEcCCCcEEEEecCCC-ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe-CCCeEEEEEec
Q 001176 358 ILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYN 435 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~dg~i~iwd~~ 435 (1132)
+.++...++.|.+|++.+. +...... + .+.+....++++||+++|++++ .++.|.+|+++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 4555577999999999743 2211111 1 1345677899999999987764 47889999997
Q ss_pred CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCC-Ce---EEEEecCCCCCeEEEEeeccCCccE
Q 001176 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVA-GR---KQYTFEGHEAPVYSVCPHHKESIQF 510 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~-~~---~~~~~~~h~~~v~~i~~~~~~~~~~ 510 (1132)
....+....... ..+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+.+ ......++++|++ ++
T Consensus 66 ~~g~l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g--~~ 139 (330)
T PRK11028 66 DDGALTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDN--RT 139 (330)
T ss_pred CCCceEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCC--CE
Confidence 433232222221 233567899999999 455544 588999999864 32 2333332 2345667787754 56
Q ss_pred E-EEEecCCeEEEEEcCCCCceEE-----e-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC--Cc--eeee
Q 001176 511 I-FSTAIDGKIKAWLYDYLGSRVD-----Y-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GA--IKRT 579 (1132)
Q Consensus 511 l-~s~s~dg~i~~wd~~~~~~~~~-----~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~ 579 (1132)
+ ++...++.|.+||+++.+.... . ...+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 6 5556679999999986433211 1 112345678999999999988763 478899999873 33 2333
Q ss_pred eccccC-----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 580 YSGFRK-----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 580 ~~~~~~-----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEc
Confidence 322111 1233588999999999975 47899999986432 22222221 14568999999999998776
Q ss_pred -CCcEEEEEcC
Q 001176 650 -DNGIKILANS 659 (1132)
Q Consensus 650 -dg~i~iw~~~ 659 (1132)
+++|.+|++.
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8899999875
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=150.62 Aligned_cols=313 Identities=9% Similarity=0.056 Sum_probs=219.9
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
.+|.+.|..+.|+.++++|++++.|..+++|++...-. ..+.+++. +.+..| ...|.|++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~----------------~k~~KPI~--~~~~~H-~SNIF~L~F 113 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV----------------RKTPKPIG--VMEHPH-RSNIFSLEF 113 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------------hcCCCCce--eccCcc-ccceEEEEE
Confidence 34889999999999999999999999999998753111 11222222 444456 899999999
Q ss_pred eeCCCEEEEee-CCeEEEEECCCCeEEEEeeCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-eeee--ecc
Q 001176 846 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTK--LKG 919 (1132)
Q Consensus 846 s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~--l~~ 919 (1132)
...++++.+|. +++|.+.|+++.+.+..+... .+.|..+..+| ..+.+++.+.+|.|.+||....+ .+.. +..
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999998 899999999999888887632 25899999999 68899999999999999998654 2221 112
Q ss_pred ccCCeeEEEEcCCC-CEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEE
Q 001176 920 HQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVY 997 (1132)
Q Consensus 920 h~~~V~~l~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vw 997 (1132)
.......+.|+|.. .+|++.+.-+-+-+||.......... .....+-......-..+.|+|.|..+.+- ....-.+|
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~-~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~ 271 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ-RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF 271 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh-hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence 33456778899876 56778888888999999764421110 01111111101233678899999988884 44455677
Q ss_pred eCCCCceeecCCCC-----CCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecc---cCCC-cccc--------c
Q 001176 998 DSKLECSRSWSPKD-----ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCR---IGPS-AYIP--------T 1060 (1132)
Q Consensus 998 d~~~~~~~~~~~~~-----~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~---~~~~-~~~~--------~ 1060 (1132)
|+-.+....+...+ .....+.+++|-.|- .+++|+.+-.|++|.+.....-.- |... ..+| .
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 87332222222211 124568889997664 499999999999999864333222 1110 0111 2
Q ss_pred cccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1061 YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1061 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
.+..||...+-.+.|+| ..++|++++-...+++|.--...
T Consensus 351 ~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 351 TVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred EEEecccccccceeecC-CcceEeccchhhheeccccccCC
Confidence 34569999999999999 77899999999999999876655
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-14 Score=141.75 Aligned_cols=240 Identities=10% Similarity=0.103 Sum_probs=185.6
Q ss_pred CcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC--CcEEEEECC
Q 001176 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVV 482 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--g~v~vwd~~ 482 (1132)
...+..+.|+.|...|..|+.|| -++|..+...... ........|.-+-|+.. ++|..+.+ +.+++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 34677788999999999999999 7888877644321 11112234555566543 44444433 459999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCeEEEEEEcCCCCEEEEEecC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
.+..+..+. ...+|.++.++. +.|+.+-.+. |.|||+++.+.+..+.. +...+.++++++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 888887765 456788998843 5666665554 99999999888776544 3445777777777778887653
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
...|.|++||..+-+.+..+..|.+ .+.+++|+++|.+++++++.|+ ||++.+.+|+.+..+.-......|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2367799999999999999999888 9999999999999999998887 699999999999999765555678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|++++|++.++.++|++|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-17 Score=178.85 Aligned_cols=237 Identities=17% Similarity=0.227 Sum_probs=185.9
Q ss_pred CCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 835 h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
| ...|+|+.|...|.++++|+ |..++||.+++..++....||.+.|+.++.+. +..++|+++.|..|++|.+.++.+
T Consensus 189 H-~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 189 H-RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred h-hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCCch
Confidence 7 88999999999999999999 67899999999999999999999999999998 889999999999999999999999
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeC
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHE 991 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d 991 (1132)
+..+.+|.+.|++++|+|-. +.+.||++++||.. .............. ..-+..+.|-..+..+++ +.+
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~-----~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTE-----KDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccc-----ccceeeeeccccccccccccCC
Confidence 99999999999999999964 78899999999998 21111111111111 134566677777777777 456
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCc
Q 001176 992 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1070 (1132)
Q Consensus 992 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1070 (1132)
+.-..|...... .+...+.-+.++.|- .+.+++-.+..+++|++.+|.....+. +|+..+
T Consensus 338 ~ea~n~e~~~l~--------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-----------ghsd~~ 398 (1113)
T KOG0644|consen 338 GEARNHEFEQLA--------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-----------GHSDEV 398 (1113)
T ss_pred cccccchhhHhh--------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-----------ccccce
Confidence 666666651111 011112222223232 456667778899999999998775554 888999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1071 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+.++|-+..+..+++.||...|||+-.|-
T Consensus 399 yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 9999999888999999999999999998776
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-14 Score=157.68 Aligned_cols=269 Identities=14% Similarity=0.184 Sum_probs=175.4
Q ss_pred CCCCCCceeccCC-cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC-Cccccccceeeeecccccccc
Q 001176 319 GVAHTPNVYSQDD-LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 319 ~~g~~~~~~~~d~-~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
+.++.+.++..+. ...+.+.++.+.+....++++|+++++++++..++.|.+|++.. +.......
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------- 75 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------- 75 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-------------
Confidence 3345555555532 22346677777778899999999996555556689999999973 32211000
Q ss_pred cccccCCCCcCeEEEEEcCCCCeEEEEeC-CCeEEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 397 QNALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~spdg~~las~~~-dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
....+....++|+|+|++|++++. ++.|.+|++++...+ .....+. +.....+++|+|+++. ++++...++
T Consensus 76 -----~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~ 148 (330)
T PRK11028 76 -----SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKED 148 (330)
T ss_pred -----ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCC
Confidence 012234678999999999888764 889999999753322 2111222 2234677899999984 446666789
Q ss_pred cEEEEECCCCeEEE-------EecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCC--Cc--eEEecC------
Q 001176 475 MIKVWDVVAGRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL--GS--RVDYDA------ 536 (1132)
Q Consensus 475 ~v~vwd~~~~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~--~~--~~~~~~------ 536 (1132)
.|.+||+.+...+. ... .......++|+|+ +.+++++.. +++|.+|+++.. .. ...+..
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pd--g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPN--QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred EEEEEEECCCCcccccCCCceecC-CCCCCceEEECCC--CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 99999997633221 111 1233567888764 477777765 999999999742 21 112211
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQIKF 611 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 611 (1132)
.......+.++|++++++++.. +++.|.+|++.... .+...... .....+.++|+|++|+++.. ++.|.+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred CCccceeEEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 1123346889999999998743 46789999986433 22222221 13456899999999998774 899999
Q ss_pred EECC
Q 001176 612 WDMD 615 (1132)
Q Consensus 612 wd~~ 615 (1132)
|+++
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9875
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-15 Score=167.92 Aligned_cols=305 Identities=17% Similarity=0.290 Sum_probs=209.2
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC---CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
+-..+.|+|=.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-...|..++++++.||.||+|+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888777 6888877779999999999998877654 35688898877778899999999999999953221
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe
Q 001176 529 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 608 (1132)
Q Consensus 529 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 608 (1132)
.. ....|+++. ..-++. ..+..+.. ..+.|.....+|+++|+-..
T Consensus 1144 ~~------------------~~~eLVTaw------------~~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 KW------------------KKPELVTAW------------SSLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred cc------------------CCceeEEee------------cccccc----CccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence 10 112334432 111111 11111111 33567777778888888899
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 609 IKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
|+|||.........+..... ..|+++.-+. .|+.+++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999998888888775543 3566666544 5799999999999999997654110
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcc
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 767 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 767 (1132)
.-|..|.-
T Consensus 1245 ------------------------------------------------------s~v~~~R~------------------ 1252 (1387)
T KOG1517|consen 1245 ------------------------------------------------------SLVCVYRE------------------ 1252 (1387)
T ss_pred ------------------------------------------------------ccceeecc------------------
Confidence 01112211
Q ss_pred cccc--eEEEEEecCCce-EEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 768 AASK--VVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 768 ~~~~--i~~~~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
|... |..+.+.++|-. |++++.+|.|++||+..... . . .... ...... .+..+++.
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e--~----------------~~~i-v~~~~y-Gs~lTal~ 1311 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E--T----------------FLTI-VAHWEY-GSALTALT 1311 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c--c----------------ccee-eecccc-Cccceeee
Confidence 2222 778888886654 99999999999999865210 0 0 0000 000000 23589999
Q ss_pred EeeCCCEEEEeeCCeEEEEECCCCeEEEEeeC-------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce
Q 001176 845 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912 (1132)
Q Consensus 845 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 912 (1132)
.+++...+|+|+.+.|.||++.. +.+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||......
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 99999999999999999999864 44343332 346689999999 78899999999999999876543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=164.91 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=184.0
Q ss_pred cCCCCcCeEEEEEcCCC-CeEEEEeCCCeEEEEEecCC----CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 401 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg-~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+..|+..|..++.++.. .++++||.||+|++|+...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66789999999988754 99999999999999998642 22333334444567899999999999 7889999999
Q ss_pred EEEEECCCC--eE-----EEEecC-CCCCeEEEE-eeccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCeEEEE
Q 001176 476 IKVWDVVAG--RK-----QYTFEG-HEAPVYSVC-PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 544 (1132)
Q Consensus 476 v~vwd~~~~--~~-----~~~~~~-h~~~v~~i~-~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~ 544 (1132)
|++.++... +. .+.... ..+.+.++. +........++.+..-+.|..||.++...... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 21 111112 234444443 33222223788889999999999988766553 44567799999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC---CEEEEEE--cCCeEEEEECCCCee
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 619 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 619 (1132)
+.+|.+.+++.|+. .|.+.+||++-+.++..+......++..+..+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999975 77899999999999888876555577777766643 4555544 578999999999877
Q ss_pred EEEEeCCCC-----------------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 620 LTTVDADGG-----------------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 620 ~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
...+-.... ........+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 666643211 011122333344568899999999999998776
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=163.63 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=179.7
Q ss_pred cceEEEEEec--CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 770 SKVVRLIYTN--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 770 ~~i~~~~~s~--~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
..|+.+.+-+ |...+++++.||.|+||+--.... .... -+.-|..-++..... .+.-.-+.|-.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~--~~~e----LVTaw~~Ls~~~~~~--------r~~~~v~dWqQ 1175 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW--KKPE----LVTAWSSLSDQLPGA--------RGTGLVVDWQQ 1175 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc--CCce----eEEeeccccccCccC--------CCCCeeeehhh
Confidence 3455565544 456788999999999996322110 0000 112233222222211 12224456666
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---eeeeeeccccC
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQN 922 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~ 922 (1132)
...+|.+++ -..|+|||+..-.+...+.. ....|+++.-+-..|+++|.|..||.|++||.... ..+...+.|++
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 555666655 57899999998777776654 33457777665546899999999999999998753 35677788988
Q ss_pred C--eeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC
Q 001176 923 R--ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 999 (1132)
Q Consensus 923 ~--V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 999 (1132)
. |..+.+-+.|- .|++|+.||.|++||+..........+.... ..+...+++..+++...+|+|+.+.|++|++
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~VH~hapiiAsGs~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTVHEHAPIIASGSAQLIKIYSL 1332 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeeeccCCCeeeecCcceEEEEec
Confidence 8 99999988774 5999999999999999885322211111111 0013478999999999999987799999999
Q ss_pred CCCceeecCCCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 1000 KLECSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 1000 ~~~~~~~~~~~~~----h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
.++.+..+....+ ..+.+.+++|.|.--+||+|+.|.+|.||......
T Consensus 1333 ~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 7777665543322 14568999999999999999999999999887654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-12 Score=129.69 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=106.0
Q ss_pred cceEEEEEecCCceEEeecccc-eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 770 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
..|.-..+.-++..++.+..|| .+.+|+.. ++++-.. .. . -+.|.++..++|
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~-e~---~-lg~I~av~vs~d 412 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRI-EK---D-LGNIEAVKVSPD 412 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEe-eC---C-ccceEEEEEcCC
Confidence 3455555666666788888887 78887653 3332221 11 2 567999999999
Q ss_pred CCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC----cEEEEEcccceeeeeeccccCC
Q 001176 849 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNR 923 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~ 923 (1132)
|++++++. ...+.+.|+++++....-+...+-|+.++|+| +++++|.+--+| .|++||+.+++...... ..+.
T Consensus 413 GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~ 490 (668)
T COG4946 413 GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAY 490 (668)
T ss_pred CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccc
Confidence 99999998 57899999999988766666778899999999 999999987776 68999999888665433 2233
Q ss_pred eeEEEEcCCCCEEEEEc
Q 001176 924 ITGLAFSPTLNALVSSG 940 (1132)
Q Consensus 924 V~~l~~spdg~~l~s~~ 940 (1132)
=.+-+|.||+++|.--+
T Consensus 491 DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 491 DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccCcccCCCCcEEEEEe
Confidence 34678999999876544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=166.82 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=163.8
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCcee
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 441 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~ 441 (1132)
+..|.|||........ +..|...+.+.+|||||+.||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654221 45678889999999999999987653 479999998875322
Q ss_pred eeeeeecccCCEEEEEEecCCCcEEEEEE-cCCCcEEEE--ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-ecC
Q 001176 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AID 517 (1132)
Q Consensus 442 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~dg~v~vw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~d 517 (1132)
...+.+| ...++|+|||+ .|+.+ +.+|.+.|| |+.+++ ...+..+...+....|+|++ ..|+.+ ..+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2233344 34689999999 45554 567765555 665555 45666777778889998854 655544 467
Q ss_pred CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 518 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
|...+|+++..........+.. ....|+|||++|+..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222332 46789999999988753 23777999988754333222 23457899999
Q ss_pred CEEEEEEcCCeEEEEEC--CCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 598 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
++++.++.++.+.+|.+ .+++.+..+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998888888875 35777777765543 6788899884
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=139.65 Aligned_cols=252 Identities=13% Similarity=0.239 Sum_probs=181.5
Q ss_pred eecCCCCeeEEEEccCCC----eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 339 TLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 339 ~l~h~~~V~~~~~spdg~----~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
++.|.-+++.+.|.|+.. .+|||.+ ..+++|.+...+..... ...+....-..+..++++..|+
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence 356999999999999862 3677764 58999998743211100 0011111133477899999999
Q ss_pred C-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---EEEe
Q 001176 415 P-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTF 490 (1132)
Q Consensus 415 p-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~ 490 (1132)
. |-++|.+++-|.+..|||++++..-.....|-+|...|.+++|..++.+ ++++.|.||.|+++|++..+- +++-
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence 8 7889999999999999999997543333467799999999999998877 899999999999999987543 2222
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecC-CeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~ 567 (1132)
.....+...++|+... -+++++-..| ..|.+-|++.... ...+..|.+.|+.++|.|.. ..|.++|. |.++.
T Consensus 239 p~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qal 313 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQAL 313 (364)
T ss_pred CCCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEE
Confidence 2235677888887654 3677776655 4689999998765 55889999999999999975 56777764 88899
Q ss_pred EEeCCCCc------eeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEE
Q 001176 568 EWNESEGA------IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKF 611 (1132)
Q Consensus 568 ~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 611 (1132)
+||+...- ++..+. ..+.|+.+.|++.. ..++.+. ++++.+
T Consensus 314 iWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99997532 222233 22378999999654 5555554 444443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-12 Score=145.44 Aligned_cols=197 Identities=15% Similarity=0.192 Sum_probs=152.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC---cCeEEEEEcCCCCeE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA---ISVNRCVWGPDGLML 420 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l 420 (1132)
+.|....+.-+.+ .++.++.++.+.|||...+..... +..+.. ....-+-++++.-++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~------------------i~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK------------------IQSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh------------------cCCCceEEEEeEEEEeccCcEEEE
Confidence 4555566666666 477778889999999987765432 000111 112224467777799
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-EecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~ 499 (1132)
++|+.-+.|.+|+........ .+.+|.+.|.++.|+.||. ++++.|.|+++++|++++++... +.-+|...|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999988332221 4789999999999999999 89999999999999999988776 66789999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
+++.|. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++||+..
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 999874 8999999999999976644333 55555 447899999998888888875 88899999864
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=154.97 Aligned_cols=197 Identities=13% Similarity=0.163 Sum_probs=156.9
Q ss_pred eEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc
Q 001176 841 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
..++|+.||..+++++ ||++|+|++.+...+.....|..+|.++.|+| ||++|++-+.| ..+||++.++..+.+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999998888888889999999999999 99999999999 999999999977776653
Q ss_pred c--cCCeeEEEEcCCC-----CEEEEEcCCCcEEEEECCCccccccee-eeCCCCCCCCCCCceeEEECCCCcEEEE-Ee
Q 001176 920 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRF-IQAPAGRQSPLVGETKVQFHNDQTHLLV-VH 990 (1132)
Q Consensus 920 h--~~~V~~l~~spdg-----~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 990 (1132)
. ......+.|+.|+ ..++....-+.|+.|++..+..-.... .+....+ ..+++++.|+||++++. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 2 2236677888777 333444455678888876654321111 1111122 36899999999999999 57
Q ss_pred CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 991 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 991 d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
+|.|.+++. +.++..... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999 555554443 67799999999999999999999999999988764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-13 Score=147.90 Aligned_cols=322 Identities=12% Similarity=0.118 Sum_probs=199.8
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
++++-..++.|.+.|..+.+....+......-..+.++|||+++++++. ++.|.++|+.+++.+.++.... ...
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~ 81 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPR 81 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccc
Confidence 3456667899999999998888888766555566889999999999864 6789999999999999987644 467
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCC-----CCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCCcc
Q 001176 590 VVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFNKEGSLLAVTTS-DNGIKILANSDGV 662 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~ 662 (1132)
.+++++||++++++. .++.+.++|..+.+.+..+.... ....+.++..+|....++..-. .+.|.+.|..+..
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 799999999999875 78999999999999998886432 1235667777887775554444 4777777765541
Q ss_pred eeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccC
Q 001176 663 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 742 (1132)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1132)
.+....
T Consensus 162 ~~~~~~-------------------------------------------------------------------------- 167 (369)
T PF02239_consen 162 NLKVTT-------------------------------------------------------------------------- 167 (369)
T ss_dssp CEEEEE--------------------------------------------------------------------------
T ss_pred ccceee--------------------------------------------------------------------------
Confidence 111000
Q ss_pred ceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEee-cccceeEEEeeccccCCCCCccccccccccccCC
Q 001176 743 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 821 (1132)
Q Consensus 743 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~ 821 (1132)
+. .........|+|++++++++ ...+.+.++|....+.. ....
T Consensus 168 ------------------i~-----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v-------------~~i~ 211 (369)
T PF02239_consen 168 ------------------IK-----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV-------------ALID 211 (369)
T ss_dssp ------------------EE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE-------------EEEE
T ss_pred ------------------ec-----ccccccccccCcccceeeecccccceeEEEeeccceEE-------------EEee
Confidence 00 11234567899999887664 44577878876432210 0111
Q ss_pred CcCcccccCCCCCCCCCCeeEE---------EEeeCCCEEEE-eeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 822 SGTLMTNDINESKPTEESAACI---------ALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 822 ~~~~~~~~~~~~~h~~~~v~~~---------~~s~dg~~la~-~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
.|... | ..++..+ +.+..+...++ .+.+.+.+||..+++.++++....+. .-+.-+| ++
T Consensus 212 ~g~~p--------~-~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s 280 (369)
T PF02239_consen 212 TGKKP--------H-PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DS 280 (369)
T ss_dssp -SSSB--------E-ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-
T ss_pred ccccc--------c-ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CC
Confidence 11111 1 1111111 11223333322 23556778999999999999987666 7788899 88
Q ss_pred CeEEEE----eCCCcEEEEEcccceeeeeecccc-CCeeEEEEcCCCCEEEEEc--CCCcEEEEECCCcccccc
Q 001176 892 NIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 892 ~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~~--~D~~i~iwd~~~~~~~~~ 958 (1132)
+++.+. ...++|.++|..+.+.+..+.... .++..+.|++||+.+..+. .++.|.+||..+.+....
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 888887 455899999999998877775333 3589999999999755444 334799999999875543
|
... |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=139.15 Aligned_cols=240 Identities=13% Similarity=0.201 Sum_probs=182.1
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEEcccceee
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 914 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 914 (1132)
...+..+.|..|...|..|+....++|+.+..............|--+-|+. .++|..+.+. .+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4467778899999999999966678888776554333333344566777876 4777666553 5999999888877
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-E--eC
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 991 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~d 991 (1132)
..+. ...+|.++.+.. ++|+.+-.+. |+|||+++-+.+.. ...-.+-...+.++.++..+.+++. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhT-----I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHT-----IETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehh-----hhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7765 456798998854 4666665554 99999998664332 2221111134666677777789999 3 46
Q ss_pred CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceecccCCCccccccccCCCCCC
Q 001176 992 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069 (1132)
Q Consensus 992 ~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1132)
|.|.+||. +......+ ++|.+++.+++|++||.+|||+++.|+ |||+.+.+|+.+..|....+ ...
T Consensus 153 GdV~l~d~~nl~~v~~I---~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---------~~~ 220 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI---NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---------PVS 220 (391)
T ss_pred ceEEEEEcccceeeeEE---EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------eeE
Confidence 89999999 77766666 467999999999999999999999997 89999999999999986643 256
Q ss_pred cEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1070 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1070 v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+..++|+| ++.+|.+.+..++|.++.++...
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 78999999 88999999999999999998866
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=139.63 Aligned_cols=238 Identities=13% Similarity=0.147 Sum_probs=181.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
-..+|+|.+|++|+. .+|++.....|.||.......-. ....+..|...|++|+|+|.++.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 346899999999998 68888888999999987765211 1223778999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE----EEecCCCCCe
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPV 497 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~----~~~~~h~~~v 497 (1132)
+|+.|..-++|....+...+....+..|...++++.|+|.++ .|++|+..+.|.||=.+...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999977777777777888999999999999998 7999999999999987654422 1223467889
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEc-----CC-------------CCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLY-----DY-------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
+++.|+|++ -+|++|+.|+..|++.. +. +.....+...++.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 999999976 79999999999999853 11 1111233356779999999999999998875
Q ss_pred CCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcC
Q 001176 560 KEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1132)
|..+.+-|..... .+........ +..++.|-.+. .++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecCC-ceeecCCC
Confidence 7778888876554 3333333333 56666665443 45555554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-14 Score=160.02 Aligned_cols=269 Identities=13% Similarity=0.191 Sum_probs=185.5
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
..|..+..|+ |...|..++.++....++++||.||+|++||...-..-. ..++ ....+...+..+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4567788888 999999999998774489999999999999986532210 0000 00012235678999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCC--Ccee--eeeeeecc--cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GELR--QHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~--~~~~--~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
+.+.+.|+.+|+++.||.|++.+++.. .... +......+ ..-|..-+|....+...++.+..-+.|..||++..
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998862 1111 11111122 22344445554444336778888899999999887
Q ss_pred eEEEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCeEEEEEEcC---CCCEEEEEec
Q 001176 485 RKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 558 (1132)
Q Consensus 485 ~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~---~~~~l~~~~~ 558 (1132)
....+++. ..+.|++++.+|.. .++++|+..|.+.+||++-+..+..+... ..+++.+...| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 66555443 45789999998765 79999999999999999988777655432 34666666655 3456666654
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCC------------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
.+.+.|.+|++.+|.+...+...... ......+...+..+++|+.|..|+.||...
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 24677999999998766665433110 111233344457888999999999999754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-12 Score=137.50 Aligned_cols=333 Identities=14% Similarity=0.167 Sum_probs=198.5
Q ss_pred cEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEE
Q 001176 464 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 543 (1132)
Q Consensus 464 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1132)
++++++-..++.|.+.|..+.+.+.++......-..+.+++ ||.++++++.||.|.++|+.+.+....+.. +.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence 34567777899999999999999999986554444456655 558898899999999999999998777765 445678
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 001176 544 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN 616 (1132)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1132)
+++|+||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..+|....++..- +.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998764 46789999999999998876432 22466777888888666554 558888889877
Q ss_pred CeeEE--EEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccccc
Q 001176 617 MNMLT--TVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 693 (1132)
Q Consensus 617 ~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1132)
.+.+. .+... .......|+|++++++.+ ..++.|-++|..++ +....+...... ..
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p-~~---------------- 218 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKP-HP---------------- 218 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSB-EE----------------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccc-cc----------------
Confidence 65443 33321 245788999999987665 45678999998887 333322210000 00
Q ss_pred CCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceE
Q 001176 694 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 773 (1132)
Q Consensus 694 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 773 (1132)
+ +... +.-+ ..+.+.
T Consensus 219 ------------------------------------------------~--~~~~------------~php---~~g~vw 233 (369)
T PF02239_consen 219 ------------------------------------------------G--PGAN------------FPHP---GFGPVW 233 (369)
T ss_dssp ------------------------------------------------T--TEEE------------EEET---TTEEEE
T ss_pred ------------------------------------------------c--cccc------------ccCC---CcceEE
Confidence 0 0000 0000 000000
Q ss_pred EEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEE
Q 001176 774 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 853 (1132)
Q Consensus 774 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la 853 (1132)
+....+...++.-....+ .+|+..+.+++...... ... .-+..+||++++.
T Consensus 234 --~~~~~~~~~~~~ig~~~v----------------------~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vw 284 (369)
T PF02239_consen 234 --ATSGLGYFAIPLIGTDPV----------------------SVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVW 284 (369)
T ss_dssp --EEEBSSSSEEEEEE--TT----------------------T-STTTBTSEEEEEE-S----SSS---EE--TT-SEEE
T ss_pred --eeccccceecccccCCcc----------------------ccchhhcCeEEEEEECC----CCc-ceeecCCCCccEE
Confidence 011111212111111122 23344444444332211 223 6778899999999
Q ss_pred Ee---e--CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCC--CcEEEEEcccceeeeeec
Q 001176 854 SA---S--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 854 ~~---s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~~~l~ 918 (1132)
+. + .++|.++|.++.+...++.. ....+..+.|++ +|+.+-...++ |.|.|||..+.+++.++.
T Consensus 285 vd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 98 3 37899999999988877753 223599999999 77755544443 369999999999988876
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=145.78 Aligned_cols=286 Identities=12% Similarity=0.145 Sum_probs=211.6
Q ss_pred ceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC--CcCeEEEE
Q 001176 335 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCV 412 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~ 412 (1132)
++++.|.+...-+.|..||||+|++|+|...-.|++||+..-..... .| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE---------------------RhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE---------------------RHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee---------------------ecccccceeEEE
Confidence 44667778889999999999999999999999999999987554321 23 23455555
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
+|-|-..++.-..|.+|.+-..-+ .... ..+ ...-.+++++.-... |+.++....|+-.+++.|+.+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy~--~RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eeee--eec---CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 666766677777788776654322 1110 011 112345555544443 44455566899999999999999988
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC------CCC-----eEEEEEEcCCCCEEEEEecCCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------~~~-----~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
..+.++++.+++.. .+|++|+.+|.|.+||.++......+.. +.+ .|+++.|+.+|-.+++|+.
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88999999998765 7999999999999999988766554332 222 5999999999999999875
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
.|.+.+||+++.+++..-.....-+|..+.|.+.+ +.+++. ....++|||-.+|+....+... ..++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeec
Confidence 78899999999887765544344478889997763 445554 4668999999999999888654 3589999999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001176 640 EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~ 659 (1132)
++.+++++..++.+..|=+.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCceEEEecCCCcceeEEcc
Confidence 99999999988887776543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-13 Score=132.91 Aligned_cols=285 Identities=15% Similarity=0.177 Sum_probs=190.8
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC-CCeEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 421 (1132)
...+..++|++.-. -+|++..|-.|++||-....... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34688899999654 47788899999999976622111 01124558999999995 56788
Q ss_pred EEeCCCeEEEEEecCCCcee-----------eeeeeecccCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~-----------~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~~~~~~~~ 489 (1132)
+|+..| |.+|..+...... +...-.+| .+|+++.|.+||. .+++++. |..|.|||+.++..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 888777 9999875321111 11123355 5899999999999 6777764 67999999999887655
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
....-+.+.-+.|+|++ ++|++++-|+..++|.....-.........+.|...+|+|+|++|+.... +. -++|
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLY 306 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEE
Confidence 44456778899998865 89999999999999965443333334444559999999999998876553 12 2333
Q ss_pred eCCC----Cc-----------eeeee------cc--ccCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCCCe
Q 001176 570 NESE----GA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMN 618 (1132)
Q Consensus 570 d~~~----~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~ 618 (1132)
.+.. +. ++..+ .+ .-.+.+.+++|.|.|.++++.-.. ..|.+||.+..-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 3211 00 00001 11 112367889999999999985432 346678776544
Q ss_pred eEEEEe--CCCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 001176 619 MLTTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 619 ~~~~~~--~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.+.... ...+. .-..++|+| ++.+|.++-..|.+.-|.+.
T Consensus 387 ~vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 387 PVELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ceEEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 443331 11111 245677777 77888888888888888753
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-10 Score=119.06 Aligned_cols=516 Identities=15% Similarity=0.158 Sum_probs=277.9
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEE------EcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLV------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 405 (1132)
..++..+...|-+-|+...|+|||+.++++ +...+.+.+.+.+.|+.... ..+ |
T Consensus 67 k~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-----------------Tyf-G-- 126 (668)
T COG4946 67 KDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-----------------TYF-G-- 126 (668)
T ss_pred ccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-----------------EEe-c--
Confidence 344555555577889999999999975552 22345677777777775431 012 2
Q ss_pred cCeEE-EEEcCCCCeEEEEeCCCe----EEEEEecCCCc-eeeeeeeecccCCEEEEEEecCCCcEEEEEE---------
Q 001176 406 ISVNR-CVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC--------- 470 (1132)
Q Consensus 406 ~~V~~-v~~spdg~~las~~~dg~----i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~--------- 470 (1132)
..-+. .-|+|||+.|++...-.- -.+|.+..... .. .| .-++.+.+.+- ||. ++.|
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 23333 449999999988754322 23444433221 11 11 23455555553 343 3322
Q ss_pred -----cCCCcEEEEECCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEE
Q 001176 471 -----GDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCT 542 (1132)
Q Consensus 471 -----~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~ 542 (1132)
+..| ++|--.. |+.-..+-...+.|.+-.+.. + ...+....||.=.+|..+-.+.-. ..|.. .-.
T Consensus 198 K~YkGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldGkDl--rrHTnFtdYY 270 (668)
T COG4946 198 KGYKGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDGKDL--RRHTNFTDYY 270 (668)
T ss_pred ccccCCccc--eEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCCchh--hhcCCchhcc
Confidence 2222 3453222 222222222233333322211 1 233334455555555443322211 11211 233
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc---c---cCCc-eEE---E-EEeC-CCCEEEEEEcCCeEE
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKRS-LGV---V-QFDT-TRNRFLAAGDEFQIK 610 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~-v~~---~-~~~~-~~~~l~~~~~dg~i~ 610 (1132)
+-..+.||+.++... .|.|++||..+.+....--+ . .... +.- + .|++ +|++++..| -|+..
T Consensus 271 ~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaF 344 (668)
T COG4946 271 PRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAF 344 (668)
T ss_pred ccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEE
Confidence 344577999988753 45599999987654322111 1 1100 000 1 1332 567777776 46677
Q ss_pred EEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCcceeeeeccccccccccCCCCCCCCCccc
Q 001176 611 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 689 (1132)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1132)
+.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-++|..+++ .-+. ..
T Consensus 345 i~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~-e~------------------- 399 (668)
T COG4946 345 IMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRI-EK------------------- 399 (668)
T ss_pred EECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEe-eC-------------------
Confidence 77766665554322 22577777777888899999999 89999988772 1111 10
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccc
Q 001176 690 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 769 (1132)
Q Consensus 690 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 769 (1132)
.-
T Consensus 400 ------------------------------------------------------------------------------~l 401 (668)
T COG4946 400 ------------------------------------------------------------------------------DL 401 (668)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 22
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
+.|.++..+++|+.++++.....+.+.|++ +|.+....-.. .+-|+.++|+|++
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vidid----------------------ngnv~~idkS~----~~lItdf~~~~ns 455 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDID----------------------NGNVRLIDKSE----YGLITDFDWHPNS 455 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEec----------------------CCCeeEecccc----cceeEEEEEcCCc
Confidence 457889999999999998888777777654 44433333332 6779999999999
Q ss_pred CEEEEee-C----CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe-------CCCcEEEEEcc--cceeee
Q 001176 850 SYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------EDSSVQIYNVR--VDEVKT 915 (1132)
Q Consensus 850 ~~la~~s-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-------~dg~v~iwd~~--~~~~~~ 915 (1132)
+++|.+- + ..|+++|+.+++..... ...+.-.+-+|.| ++++|..-+ .|..+.=+... +...+.
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv 533 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLV 533 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEeeeccceEE
Confidence 9999986 4 35999999988765443 3445556788999 888876554 23222222211 111111
Q ss_pred eec-cccCCeeEEEEcCCCCEEEE-EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEE------
Q 001176 916 KLK-GHQNRITGLAFSPTLNALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------ 987 (1132)
Q Consensus 916 ~l~-~h~~~V~~l~~spdg~~l~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~------ 987 (1132)
.+. +.. ||-.+..-. -+.++.+-+=++.... .++..-++ .-..++=-.+|+.+.
T Consensus 534 ~L~~g~~--------sP~~q~p~~~~~ea~e~dle~ie~r~----eP~pVee~------dY~sI~~lk~~killfs~pi~ 595 (668)
T COG4946 534 VLGRGYY--------SPFNQPPDEANSEAGEVDLEGIEDRV----EPFPVEEG------DYRSIAGLKNGKILLFSYPIH 595 (668)
T ss_pred EecCCCC--------ChhhcCchhcCccccceehhhhcccc----cccccCcc------ceeEeeecCCCeEEEEEeecc
Confidence 111 111 111111110 1122222222221100 01111111 001111111221111
Q ss_pred -----E--E--eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 988 -----V--V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 988 -----~--~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
. + .-|.+.+||++.+....+ ...++++..|+|++.+.. -.||.+++++++.
T Consensus 596 Gefs~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 596 GEFSQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred chhhhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 1 236788999966655554 567999999999999988 7899999999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-12 Score=125.59 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=169.9
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCC--EEEEEEecCCCcEEEEEEcCC------CcEEE
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD------KMIKV 478 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~--v~~v~~s~d~~~~~l~s~~~d------g~v~v 478 (1132)
...+++|+.|...+++|..+| .+||+++--+.... -+-+.+. +.-+-| -.+. +.+.||.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~---r~~~~~G~~~veMLf--R~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS---RQFIDGGFKIVEMLF--RSNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh---hccccCchhhhhHhh--hhce-EEEecCCCCCCCCCceEEE
Confidence 455699999999999998888 99999876332111 1112222 222222 2232 23334333 48999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCC--CeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~ 555 (1132)
||=...+++.++. ...+|.++.+.+ ..|++. ..+.|.+|... +.+....+.... ....+++-+.+..+|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 9977777887775 678899999865 344443 57899999887 444444443322 23444444444445554
Q ss_pred EecCCCCCCeEEEEeCCCCce--eeeeccccCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeeEEEEeCCCCCCCc
Q 001176 556 CGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
-| ...|+|.+-|+...+. ...+..|.. .|.|++.+-+|..++++|..|+ |||||..+|+.+..+........|
T Consensus 154 Pg---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PG---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CC---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 44 3578999999986655 466777777 8999999999999999998887 799999999999999866666689
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+++|||+..+|+++++.|+++++.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=134.92 Aligned_cols=235 Identities=17% Similarity=0.180 Sum_probs=181.3
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~- 482 (1132)
-..+|+|.+|++|+..+|.+..+..|.||...+.+......++..|...|++++|+|... .|++|+.|..-+||...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999999887777778999999999999999998 79999999999999984
Q ss_pred CCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCeEEEEEEcCCCCEEEEE
Q 001176 483 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 483 ~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.++ +.-.+..+....+++.|+|.+ +.+++|+.-..|.+|-++....-. .-....+.|.++.|+|++-+|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 333 344566788999999999977 789999999999999887654321 223456689999999999999988
Q ss_pred ecCCCCCCeEEEEeCC-----C-------------CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 557 GTSKEGESHLVEWNES-----E-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+. |+..+++..- . |+++..+. ...+.+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 75 6667777541 1 22333343 233479999999999999999999999999987664
Q ss_pred -eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 619 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 619 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.+...... .-+..++.|-.+...++ ++.|
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv~-ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVVA-AGYD 269 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCceee-cCCC
Confidence 23332221 13566777766554444 3344
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-08 Score=125.50 Aligned_cols=534 Identities=10% Similarity=0.092 Sum_probs=298.1
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEE----EecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 55789999999999999999999999999 444422 22 1223466899999999999 67777778888775
Q ss_pred ECCCCeEE------------------------EEecC------------------------CCCCeEEEEeeccCCccEE
Q 001176 480 DVVAGRKQ------------------------YTFEG------------------------HEAPVYSVCPHHKESIQFI 511 (1132)
Q Consensus 480 d~~~~~~~------------------------~~~~~------------------------h~~~v~~i~~~~~~~~~~l 511 (1132)
+ .+...+ ..|+| +...-..|+| .+||.++
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yF 224 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYF 224 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEE
Confidence 4 211111 11211 1112234455 6678999
Q ss_pred EEEec---C---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc---
Q 001176 512 FSTAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG--- 582 (1132)
Q Consensus 512 ~s~s~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--- 582 (1132)
++.+. . +.+|+|+-+ +........-.+--.+++|-|.|+++++... ..+...|.+|. ++|-.-..|.-
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCC
Confidence 88875 2 579999865 3333333333344568899999999998865 23345577776 34444444433
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.....|..+.|++++..|+..-.|. |.+|...+... .+.+..... ..+..+.|+| +...|...+.+|.+..++..
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 2333789999999999999977555 99999888653 334433322 2455699999 55667778877888776653
Q ss_pred CcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccc
Q 001176 660 DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE 739 (1132)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1132)
-. ...+... ...|...++.-
T Consensus 380 ~~-----v~~s~~~-------------------------------------------------------~~~D~g~vaVI 399 (928)
T PF04762_consen 380 WD-----VSRSPGS-------------------------------------------------------SPNDNGTVAVI 399 (928)
T ss_pred EE-----EEecCCC-------------------------------------------------------CccCceEEEEE
Confidence 21 0000000 00011112222
Q ss_pred ccCceeeeecCCCCCCCcc--eEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccc
Q 001176 740 DVDKIKSWRIPDISDPSQI--KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 740 ~~~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
...++.+-.+....-+..+ ..+.+ ...|..++|++++..+++...||.+.+|.+................+
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~-- 472 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI-- 472 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc--
Confidence 2345555555543333332 33332 35799999999998899999999999998765332210000000000
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-C---CeEEEEECCCCe---EEEEeeCCCCCeEEEEEeCCC
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQD 890 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~sp~~ 890 (1132)
............ . ...+..++|..+..+++... + ..+.+++....+ .......-.+.+..+...+ .
T Consensus 473 ---~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 545 (928)
T PF04762_consen 473 ---SLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-D 545 (928)
T ss_pred ---cccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-C
Confidence 000000000000 1 45678888888888777765 3 468888874332 2333333344555555555 4
Q ss_pred CCeEEEEeCCCcEEEEEccccee-eeeeccccCCeeEEEEcCCC--CEEEEEcCCCcEEEEECCCcccccceeeeCCCCC
Q 001176 891 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTL--NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 967 (1132)
Q Consensus 891 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 967 (1132)
...++.-..+|.+...+...... +..+..-...+..+.+.... ..++.-+..|.+++ . +. .+.
T Consensus 546 ~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n-~~-----~la----- 611 (928)
T PF04762_consen 546 SGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---N-SR-----LLA----- 611 (928)
T ss_pred CcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---C-CE-----EEe-----
Confidence 44466677899888766554322 22333222222222222221 14444444554442 1 11 111
Q ss_pred CCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC-CceeecCCC-C--CCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 968 QSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPK-D--ALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 968 ~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~-~~~~~~~~~-~--~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
..++++++ .+.+|+. .....+++.++.. ..-...... . .+...++.+ ..|..|+++--...=-|..
T Consensus 612 ----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVLQ 682 (928)
T PF04762_consen 612 ----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVLQ 682 (928)
T ss_pred ----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEEE
Confidence 23455555 3445555 5677788888751 111111000 0 011223333 4677887776555555666
Q ss_pred CCCcce
Q 001176 1043 AETLRF 1048 (1132)
Q Consensus 1043 ~~~~~~ 1048 (1132)
+.-|.+
T Consensus 683 mPRGNL 688 (928)
T PF04762_consen 683 MPRGNL 688 (928)
T ss_pred cCCCch
Confidence 665543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-15 Score=151.34 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=219.0
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
.-+.+.+.|+.+|++ ++.|+..|.|-.+|+.+++....- .-...|.++.|-.+..++|+
T Consensus 129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHh
Confidence 346788999999996 666777899999999998875431 13347889999999999999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
+ ....+.|||-.+ ..+.+ ++.| ..|..+.|.|--- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-
T Consensus 188 A-QK~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 A-QKKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred h-hhceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 8 456699999664 44554 3333 4789999999866 8999999999999999999999999888889999988
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
+|.+ ..+-+|...|+|.+|.....+++..+..|.++|.++++.++|+++++.|. |..+.|||++....+.++..
T Consensus 260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec
Confidence 8876 78999999999999999999999999999999999999999999999986 77899999998887777665
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEE-CCC--CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD-MDN--MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.. ....+++|..| +++.+....|.||. .-. +..-..+..|.....|..+.|.|-...|-+|...|.-.+.-..
T Consensus 334 p~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 334 PH--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPG 409 (545)
T ss_pred CC--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccC
Confidence 22 56678888765 55555666899994 222 1222222233334489999999987788877776655554333
Q ss_pred Cc
Q 001176 660 DG 661 (1132)
Q Consensus 660 ~~ 661 (1132)
.|
T Consensus 410 sG 411 (545)
T KOG1272|consen 410 SG 411 (545)
T ss_pred CC
Confidence 33
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-11 Score=138.60 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=190.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC--cCeEEEEEcCCCCeEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~spdg~~la 421 (1132)
..+.+.++-. ++++| | ..-.|.+||+..+..+.. + .+...+..|. +.+. -.+-+++
T Consensus 8 ~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~--~-----------~~~~~~~~H~~e~~~~-----l~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRH--L-----------IQSKILEVHRGEGKVK-----LLSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhh--h-----------hhhcccccccccccce-----eccceEE
Confidence 3445555544 34444 3 246899999998876542 1 1111233340 0110 0233455
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe--EE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV--YS 499 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v--~~ 499 (1132)
++..-+.+..=+..-. .+..-.+.|....+..+.+ .++.++.+..+.+||...+.....+...+... .+
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 5544333333222211 1112234455556666667 67888888999999998887766655332211 11
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee-
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 578 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 578 (1132)
+-+-...+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 11222333478999999999999999866666678999999999999999999999985 7789999999988776
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
+.-+|.. .+..++|.|+ .++++++|.+.++|+.+. ..+..+..|... .+..++..++...+++++.|+.+++|++
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5667777 7888999987 899999999999997654 444477766543 6899999999999999999999999998
Q ss_pred CCc
Q 001176 659 SDG 661 (1132)
Q Consensus 659 ~~~ 661 (1132)
.+.
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=157.55 Aligned_cols=221 Identities=13% Similarity=0.131 Sum_probs=145.0
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+.+. +...+.+++|||||++++.++.. +..|++||+.+++..... .+.+| ..+++||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS 256 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS 256 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence 4444 77889999999999965444322 247999999887542210 02223 3468999
Q ss_pred CCCCeEEEEe-CCCeEEEE--EecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEe
Q 001176 415 PDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTF 490 (1132)
Q Consensus 415 pdg~~las~~-~dg~i~iw--d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~ 490 (1132)
|||++|+.++ .+|.+.|| |+.++. .. .+..+...+....|+|||+. ++++...++...||++... .....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999988865 67766665 555544 22 35567777889999999994 3344556788888876532 222333
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+.. ....|+|+ |..|+.++.++ +.+||+.++........ .....+.|+|||++|+.++. ++...+|+
T Consensus 332 -~~~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l~ 399 (429)
T PRK01742 332 -GGRG--YSAQISAD--GKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVLQ 399 (429)
T ss_pred -cCCC--CCccCCCC--CCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEEE
Confidence 3433 34667664 47887777765 55599987765432222 23356789999999999875 33345554
Q ss_pred C--CCCceeeeeccccCCceEEEEEeCC
Q 001176 571 E--SEGAIKRTYSGFRKRSLGVVQFDTT 596 (1132)
Q Consensus 571 ~--~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1132)
+ .+|+.++.+..+.. .+...+|+|-
T Consensus 400 ~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEECCCCceEEccCCCC-CCCCcccCCC
Confidence 3 35777888876665 6777888874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-12 Score=135.28 Aligned_cols=570 Identities=12% Similarity=0.111 Sum_probs=336.3
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
......|++|+.... ++|+|+.||.++|-.+.+...-... --+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445789999999887 6999999999999998764321110 00011111111234889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~~i 500 (1132)
+...+|.|.+|-+-.|.-.... .-.....-|.+++|+.||. .+.....||.|.|=.+...+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999999887543321 1123456789999999999 6777888998887665433221 223321 23356
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCC-------ceEE----ecCCCCeEEEEEEc--------CCCCEEEEEecCCC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRVD----YDAPGNWCTMMAYS--------ADGTRLFSCGTSKE 561 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~----~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~ 561 (1132)
.|+++. ..++.+-..|.+.+||....- +... +...+..+..+.|. ||-..|+.|..
T Consensus 163 ~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--- 237 (1189)
T KOG2041|consen 163 LWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--- 237 (1189)
T ss_pred eecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---
Confidence 676654 677777788999999875321 1111 11122235555552 46678888864
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
+|++.+..-........+... -.+..+.|+++|..++++|.+ +.|.+|.. -|+.+.+++.++. .|
T Consensus 238 -nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 -NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred -CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 555655543322222222211 156778999999999998743 25666654 4677777877655 79
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCC
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 712 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 712 (1132)
++++|-..|-.++.+ .|+.|.+=+++... ....+.....
T Consensus 312 t~lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~TvV--------------------------------------- 350 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEETVV--------------------------------------- 350 (1189)
T ss_pred eeeEEcCCceEEEEE-ecceEEEEeecccc-eEEEeeeEEE---------------------------------------
Confidence 999998888777765 46688776665441 1111111000
Q ss_pred CCCCcccCccCcCCcccccccccccccc---cCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc
Q 001176 713 GPPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 789 (1132)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 789 (1132)
++-... .-.|.+||..+....-+. -....++++..+--.|++-..
T Consensus 351 ----------------------y~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d 398 (1189)
T KOG2041|consen 351 ----------------------YVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQD 398 (1189)
T ss_pred ----------------------EEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccc
Confidence 000001 135788888764332221 122345555555444555555
Q ss_pred cceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe
Q 001176 790 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 869 (1132)
Q Consensus 790 dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~ 869 (1132)
+|.+.-++.-. .+ .......+-+ .-|..+.. . -..|.-.-..-++.+++.++...+.+|.....+
T Consensus 399 ~~~i~e~s~le-~~------~~~~~l~LCN-SIGT~lD~------k-ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 399 DGVIPEYSTLE-NR------SRVYFLQLCN-SIGTSLDY------K-YTDIRPKFVCVNGICVVIASEERYFIWHYVLPK 463 (1189)
T ss_pred cCCCcchhhhh-cc------cceEEEeeec-ccCCcCCC------C-cceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence 55554331100 00 0000000000 00111100 0 112332333447888999998889999876654
Q ss_pred EEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEE
Q 001176 870 VMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 946 (1132)
Q Consensus 870 ~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~ 946 (1132)
....+.+ |...- |+- ...-+|+.|+++. .. ..++.|..++|.+++.| .++|..+-..|.|.
T Consensus 464 ~~s~l~~~k~rkegr----~h~---Ddtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~ 527 (1189)
T KOG2041|consen 464 FNSVLAGVKIRKEGR----FHG---DDTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIY 527 (1189)
T ss_pred hhhhhhhhhhccccc----ccC---CCCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceE
Confidence 4333332 21111 322 1223455665442 11 35677888999999885 57888888999999
Q ss_pred EEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC----CCCceeecCCCCCCCCCeEEEE
Q 001176 947 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS----KLECSRSWSPKDALPAPISSAI 1021 (1132)
Q Consensus 947 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~~h~~~i~~i~ 1021 (1132)
-|.+.+........+ ...+..++..-+..++++ -.-|.+.+.|+ ++..+..+.... ...|+.+.
T Consensus 528 rySl~nv~l~n~y~~---------n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~ 596 (1189)
T KOG2041|consen 528 RYSLNNVVLTNSYPV---------NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYE 596 (1189)
T ss_pred EEEecceeeeecccc---------CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhh
Confidence 999987543221111 135678888888888887 45677777776 444544333222 67789999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 1022 YSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 1022 ~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
|..|...|++--+-..++|++-.+-+
T Consensus 597 Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 597 WAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred hccCCchHHhhhhhceEEEecCcCcc
Confidence 99888766655555667777765543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-12 Score=146.95 Aligned_cols=237 Identities=10% Similarity=0.103 Sum_probs=157.1
Q ss_pred cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC---CCeEEEEEecCCCceeee
Q 001176 367 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQH 443 (1132)
Q Consensus 367 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~ 443 (1132)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 68888877554321 3346678999999999999987643 4579999998875322
Q ss_pred eeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeE
Q 001176 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKI 520 (1132)
Q Consensus 444 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i 520 (1132)
+....+.+..++|+|||+. ++++.+.+| .|++||+.+++.. .+..+...+....|+|++ +.|+.++. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCC--CEEEEEeCCCCCc
Confidence 2223334557899999995 233334454 5899999888764 444455567788898754 66766665 4444
Q ss_pred EEE--EcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCC
Q 001176 521 KAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 521 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1132)
.+| |+.++.. ..+...........|+|||++++..+.. ++...|++||+.+++... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 5554433 3344444456678999999999877642 235679999998876443 33221 234578999999
Q ss_pred EEEEEEcCCe---EEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 599 RFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 599 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
.++.++.++. ++++++. +.....+..+.+ .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999886654 6777874 444555554433 577888886
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-12 Score=128.52 Aligned_cols=261 Identities=13% Similarity=0.139 Sum_probs=161.2
Q ss_pred ccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 769 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
...|++++|-|.+...++.+-.+.|.+|.......... .++......+++ +.+.+ ...|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~~s~~~~qv----l~~pg--h~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRMMSTHHLQV----LQDPG--HNPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccccccccchhh----eeCCC--CceeeEEEEcCC
Confidence 35689999999776655555566789997653211000 000001111111 22212 478999999999
Q ss_pred CCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 849 DSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 849 g~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
|..+++++ |..|.|||.+++..+.......+.++-+.||| |+.+|..++-|+..++|......-..+...-.+.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 67899999999887666555667899999999 9999999999999999954433222222223458999
Q ss_pred EEEcCCCCEEEE-EcCCCcEEEEECCCccc--cc--------ceee------eCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 927 LAFSPTLNALVS-SGADAQLCMWSIDKWEK--LK--------SRFI------QAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 927 l~~spdg~~l~s-~~~D~~i~iwd~~~~~~--~~--------~~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
.+|+|+|++|.- ++... ++|.+.-..+ .. ...+ ....+......+..+++|.|.|.+|++.
T Consensus 286 acWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred eeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 999999987654 43333 3343321110 00 0011 1112222223677899999999999995
Q ss_pred eC---------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEeCCC
Q 001176 990 HE---------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 990 ~d---------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~---dg~~las~~~dg~i~vwd~~~ 1045 (1132)
.. ..|..||. +.........+..-...-..++|+| +|.+|..+=..|.+.-|++.-
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 32 23566777 2222221111111122244566765 677888887888888887763
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=142.70 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=212.1
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
..|.+.|..+.|+..|..|++++.|..+.+||+...+. ......+ | ...|....|
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----------------------~l~f~SG--H-~~NvfQaKF 193 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----------------------KLSFESG--H-CNNVFQAKF 193 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCc----------------------ccccccc--c-ccchhhhhc
Confidence 34889999999999999999999999999999864332 1111222 5 555655556
Q ss_pred ee--CCCEEEEee-CCeEEEEECCC-CeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee--
Q 001176 846 SK--NDSYVMSAS-GGKVSLFNMMT-FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-- 917 (1132)
Q Consensus 846 s~--dg~~la~~s-dg~i~vwd~~~-~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-- 917 (1132)
-| +.+-+++.+ ||.|++=.+.. +.+ ...+..|.++|.-++.-|+...-+.+++.|+.+.-+|+..+.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee
Confidence 55 344566666 99999877643 332 34566799999999999977788899999999999999876433332
Q ss_pred -ccccC---CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccc------cceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 918 -KGHQN---RITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKL------KSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 918 -~~h~~---~V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
..+.. ....++..|... .+++++.|..+++||...-... ...+-..+.. .....|++++|+.++.-|
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~--d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE--DDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc--cCcccceeEEecCCccce
Confidence 23333 467788888765 7999999999999998653322 1111111111 112678999999666555
Q ss_pred EE-EeCCeEEEEeC---CC----------CceeecCCCCCC--CCCeEEEEE-ccCCCEEEEEecCCcEEEEeCCCccee
Q 001176 987 LV-VHESQISVYDS---KL----------ECSRSWSPKDAL--PAPISSAIY-SCDGLLVYAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 987 ~~-~~d~~v~vwd~---~~----------~~~~~~~~~~~h--~~~i~~i~~-s~dg~~las~~~dg~i~vwd~~~~~~~ 1049 (1132)
.+ -.|-.|+++.- .+ ..... ...+| ...|..+.| -|...++++|+..|.|.||+-.+++.+
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~--vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR--VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccch--hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 55 68889999965 22 11111 12344 346888876 588999999999999999999999988
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccc
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~ 1104 (1132)
..+. +...-|-|+.-+|.. -+|+++|-|.-|+||-..+.++.+
T Consensus 430 ~~Me-----------gDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 430 RFME-----------GDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLTAERAT 472 (559)
T ss_pred HHhh-----------cccceEeccCCCCCC-chhhccCCccceeeecCCcccccc
Confidence 7765 333466677777833 599999999999999997777544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=127.83 Aligned_cols=242 Identities=17% Similarity=0.224 Sum_probs=170.2
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCC--eEEEEEeCCCCCeEE-EEeCC------CcEEEEE
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIA-IGMED------SSVQIYN 907 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~la-sg~~d------g~v~iwd 907 (1132)
+....+++|..|...+++|.|...+||+.+-.+.......+.+. +.-+-|- .++|| +|+.+ ..|.|||
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEe
Confidence 34456799999999999999989999998865443332222222 3333332 23444 44433 4799999
Q ss_pred cccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCc-ccccceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 908 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW-EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 908 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
=....++.++. ...+|.++.++++ .++.+- .+.|++|..... +.+. .+...... .+..+++-+.+..+|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~--~~et~~NP----kGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNP----KGLCSLCPTSNKSLL 151 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee--eeecccCC----CceEeecCCCCceEE
Confidence 66677777776 6788999999765 555554 567999999843 2221 22222211 123444444445566
Q ss_pred EE-E-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceecccCCCcccccccc
Q 001176 987 LV-V-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAV 1063 (1132)
Q Consensus 987 ~~-~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~ 1063 (1132)
+. | .-|+|.+-|+..........-.+|.+.|.+++++-+|.+|||+|..|+ |||||..+|+.++.+...
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-------- 223 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-------- 223 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--------
Confidence 66 4 469999999933322111112567999999999999999999999998 899999999999988744
Q ss_pred CCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1064 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1064 ~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
.....+.+++|+| +..+|+++|..|+|.++.+...+
T Consensus 224 -~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 -VDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -CchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 3347789999999 88999999999999999998765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-13 Score=141.22 Aligned_cols=118 Identities=26% Similarity=0.431 Sum_probs=106.4
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
...|...+|+|||++||+.+ ||.+||||..+.+++..++.--+...|++||| ||++|++|+.|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 55788999999999999999 99999999999999888887788999999999 99999999999999999999999999
Q ss_pred eeccccCCeeEEEEcC-------------------------------C----C-------------CEEEEEcCCCcEEE
Q 001176 916 KLKGHQNRITGLAFSP-------------------------------T----L-------------NALVSSGADAQLCM 947 (1132)
Q Consensus 916 ~l~~h~~~V~~l~~sp-------------------------------d----g-------------~~l~s~~~D~~i~i 947 (1132)
+-++|.+-|..++|.| + + -.+.++|.|-.+++
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 1 24778899999999
Q ss_pred EECCCccc
Q 001176 948 WSIDKWEK 955 (1132)
Q Consensus 948 wd~~~~~~ 955 (1132)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99987543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=145.75 Aligned_cols=242 Identities=11% Similarity=0.176 Sum_probs=166.1
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 415 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 415 (1132)
..|. |.+-|.|++|+.||. +|++||.|-.+.|||.-..+.++. +-.||...|.++.|-|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPY 104 (758)
T ss_pred hhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeecc
Confidence 3455 999999999999998 899999999999999986665542 2468999999999999
Q ss_pred -CCCeEEEEeCCCeEEEEEecCCC-------ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-
Q 001176 416 -DGLMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 486 (1132)
Q Consensus 416 -dg~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~- 486 (1132)
+.+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.+ .+.+++.||+|+-+|++....
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccC
Confidence 56789999999999999998521 12223345679999999999999966 799999999999999986321
Q ss_pred ------EE---EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCeEEEEE-EcCCCC
Q 001176 487 ------QY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMA-YSADGT 551 (1132)
Q Consensus 487 ------~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~-~s~~~~ 551 (1132)
.. .+...--...++.++|... .+|+.|+.|-..++||.+...+...- ........|+. |+|.+-
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 11 1111123456778888755 79999999999999996432221110 00111111221 122211
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1132)
+. .+ +.... .-..++-+.|+|+|..|++.-..-.|+++|+..++....+
T Consensus 263 ----kn----~~----------gn~~~-----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 ----KN----SQ----------GNLDR-----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ----cC----cc----------ccccc-----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 00 00 10000 0003556889999977777555668999999987765544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-10 Score=126.46 Aligned_cols=521 Identities=11% Similarity=0.136 Sum_probs=311.3
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
.-++|+ |...|.-+.|+.+.+. |.++..+|.|.||-+-.|..... .+-...++-|.+++|+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEc
Confidence 356677 9999999999999885 88999999999999988865432 0122356789999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eEE
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQ 487 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-------~~~ 487 (1132)
.||..++....||.|.+=.+++++.... .+++. -...+.|++|.+ .+..+-..|.+.++|-+.. .+.
T Consensus 125 ~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 125 LDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred CCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 9999999999999999998887654432 23332 234789999998 5667777899999995422 111
Q ss_pred EE----ecCCCCCeEEEEeecc------CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 488 YT----FEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 488 ~~----~~~h~~~v~~i~~~~~------~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
.. +......|..++|... ++...++.+-..|.+.+-.-.+......+.. +-.+....|+++|..|+.||
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEcc
Confidence 11 1112233555655421 3557899999999999886665555554443 36788999999999999998
Q ss_pred cCCCC----C-CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 558 TSKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 558 ~~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
.+.+. + +.|.++. .-|+.+.+++.... .|++++|-..|-.++.+ .|+.|++=+++-.-.-..+.. .
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~-----T- 348 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE-----T- 348 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee-----E-
Confidence 74432 2 2455555 45788888887766 89999998877666655 588888877764322222210 1
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCC
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 712 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 712 (1132)
+.+-..+.- .-.-.|.+||..+.++.++.......- ..
T Consensus 349 --vVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~-a~----------------------------------- 386 (1189)
T KOG2041|consen 349 --VVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENM-AF----------------------------------- 386 (1189)
T ss_pred --EEEEEccCC----CcceEEEEEecccChhhhhhhcceeeh-he-----------------------------------
Confidence 111111100 012357889988886555544332110 00
Q ss_pred CCCCcccCccCcCCcccccccccccccc-cCceeeeecCCCCCCCcceEEec------CCcccccceEEEEEecCCceEE
Q 001176 713 GPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRL------PDSIAASKVVRLIYTNSGLSLL 785 (1132)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~s~~g~~l~ 785 (1132)
..+.-.++... ++.+.-+. +.........+.+ +-...-..|.-.-..-++..++
T Consensus 387 -----------------~~ehCvL~~~~d~~~i~e~s--~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vv 447 (1189)
T KOG2041|consen 387 -----------------YREHCVLINRQDDGVIPEYS--TLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVV 447 (1189)
T ss_pred -----------------ecccEEEEeccccCCCcchh--hhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEE
Confidence 00000111111 12222110 0000000001111 0011112233333444666666
Q ss_pred eecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEE
Q 001176 786 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 864 (1132)
Q Consensus 786 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd 864 (1132)
.++.+ .+.+|.....++..... +...+ - .+. ..+...| +|+ |+++ +
T Consensus 448 iAS~e-~~~iWhy~~pK~~s~l~--------------~~k~r--k------egr-~h~Ddtp------~ga~d~~l---~ 494 (1189)
T KOG2041|consen 448 IASEE-RYFIWHYVLPKFNSVLA--------------GVKIR--K------EGR-FHGDDTP------EGAQDRTL---E 494 (1189)
T ss_pred Eeccc-cEEEEEEeccchhhhhh--------------hhhhc--c------ccc-ccCCCCc------cchhhcee---e
Confidence 66655 57788765443311100 00000 0 000 0111112 222 3322 2
Q ss_pred CCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCc
Q 001176 865 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944 (1132)
Q Consensus 865 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~ 944 (1132)
.. ..++.|..++|.+++.+. ++|.++-..|.|.-|.+.+.-+..... -+..|+.++.+-+...+|.-.--|.
T Consensus 495 ys----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv 566 (1189)
T KOG2041|consen 495 YS----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGV 566 (1189)
T ss_pred cc----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhce
Confidence 11 356777889999999975 689999999999999998877666554 4567889999888888888888888
Q ss_pred EEEEECCC---cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC
Q 001176 945 LCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 999 (1132)
Q Consensus 945 i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~ 999 (1132)
+.+.|+.- +..+. .+-.... ..|..+.|..|+..+++- ....+.+++-
T Consensus 567 ~tf~dLd~d~~g~ql~--~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 567 VTFQDLDYDFDGDQLK--LIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeeeecccccCcceee--eeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 88888872 22111 1111111 457788888887766663 4445666665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-12 Score=144.20 Aligned_cols=237 Identities=10% Similarity=0.026 Sum_probs=161.0
Q ss_pred CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC---CCeEEEEEecCCCceee
Q 001176 366 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 442 (1132)
Q Consensus 366 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---dg~i~iwd~~~~~~~~~ 442 (1132)
..|.+||........ +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888876543321 4467889999999999999988764 468999999887543
Q ss_pred eeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC-
Q 001176 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG- 518 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg- 518 (1132)
.+..+.+.+.+.+|+|||+. ++++.+.++. |++||+.+++. ..+..+........|+|++ ..|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCC
Confidence 24456667889999999995 3456666654 77789887765 4566666667778887754 66766653 33
Q ss_pred -eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 519 -KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 519 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
.|.+||+..+.. ..+......+....|+|||++|+..... .+...|.+||+..+.. +.+... . .+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence 577788765443 3333344556778999999999887642 2345799999865543 333321 1 35668899999
Q ss_pred CEEEEEEcC------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 598 NRFLAAGDE------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 598 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
+.++..+.+ ..++++|+.++.. ..+... ..+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence 988775532 3688888876554 344322 1356677776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-14 Score=144.50 Aligned_cols=232 Identities=15% Similarity=0.179 Sum_probs=192.7
Q ss_pred CcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
.-.-..+.++.+|+.|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ ++|.+ ....++||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCC
Confidence 3356789999999999999999999999999976544 222 245799999998887 55554 578999999 889
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+-.+-.|.. .|
T Consensus 201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 999988865 568889998865 78899999999999999999999988888889999999998877777753 88
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
+|.+|...+.+++..+.+|.. +|.++++.++|.+++++|.|..++|||++....+.++... .....+++|..| +|
T Consensus 274 tVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lL 348 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LL 348 (545)
T ss_pred eEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-ce
Confidence 999999999999999999988 9999999999999999999999999999988776666542 256788888766 44
Q ss_pred EEEeCCCcEEEEE
Q 001176 645 AVTTSDNGIKILA 657 (1132)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (1132)
|.+. ...|.+|.
T Consensus 349 A~~~-G~~v~iw~ 360 (545)
T KOG1272|consen 349 ALSY-GDHVQIWK 360 (545)
T ss_pred eeec-CCeeeeeh
Confidence 4443 44888995
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=135.92 Aligned_cols=253 Identities=10% Similarity=0.118 Sum_probs=169.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE-----cCCCC
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-----GPDGL 418 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----spdg~ 418 (1132)
..+....++-.|.++.+-- ...+++|+...+..+.. ++....+.+. ...|-+| .|++-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 3566677777788655543 35789999886544331 1122122222 2334444 34566
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeee--cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
-|..|-.-|.|.+.|....+..+ ..... -.+..|+|+.|-|.+.. .++..-.+|.++++|.. +...
T Consensus 187 dllIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 78888888999999876532211 11111 12468999999998876 56677789999999961 1112
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
.+..++..-.++..+.....-+. .+..++..+....+.|...+|+|||++|++.+. |+.++|+|..+.++
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 22222222223333332211110 111334444445568999999999999999985 89999999999988
Q ss_pred eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
+..++..-. ...|++|+|||+++++||+|-.|.||.+...+.+..-.+| ...|..++|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeec
Confidence 888877776 7999999999999999999999999999999888775555 5588999987
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-12 Score=144.65 Aligned_cols=236 Identities=9% Similarity=0.034 Sum_probs=151.9
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
+|..|...........+...+.+.+|||||+.++.+.. .+..|.+|++.+++... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 44444333333333346678999999999997555432 34579999998876432 112
Q ss_pred CCcCeEEEEEcCCCCeEEEE-eCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CC--cEE
Q 001176 404 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK--MIK 477 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg--~v~ 477 (1132)
..+.+..++|||||+.|+.. +.+| .|.+||+++++... +..+...+....|+|||+ .|+..+. ++ .|.
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEE
Confidence 23345568999999988865 3444 58899998875432 334455678899999999 5554443 44 455
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++|+.+++. ..+..+........|+|++ ..|+..+.+ ..|.+||+.++.... +.. ........|+|||++|+
T Consensus 315 ~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 315 KVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVI 389 (429)
T ss_pred EEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEE
Confidence 557766654 3444444445667787754 677665543 358889988765433 332 22344678999999999
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
..+.++ +...+.++++. |.....+.++.. .+...+|+|
T Consensus 390 ~~s~~~-~~~~l~~~~~~-G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 390 YSSSQG-MGSVLNLVSTD-GRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEcCC-CceEEEEEECC-CCCeEECccCCC-CcCCcccCC
Confidence 887633 24458888874 555666766554 677788876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-12 Score=146.50 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=158.0
Q ss_pred CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceee
Q 001176 366 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQ 442 (1132)
Q Consensus 366 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~ 442 (1132)
..|.+||...+.... +..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468888886543221 34567789999999999999987643 469999998876432
Q ss_pred eeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCe
Q 001176 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK 519 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~ 519 (1132)
+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+|++ ..|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCC
Confidence 3334445568899999995 334555555 699999988875 4555565556678887754 6666665 4455
Q ss_pred --EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 520 --IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 520 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
|.++|+.+++. ..+..........+|+|||++++....+ ++...|.+||+.+++......+. ......|+|||
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---CCCCceECCCC
Confidence 55566655443 3333334445578999999999877542 23457999999887755322221 23457899999
Q ss_pred CEEEEEEc---CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 598 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 598 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
++++..+. .+.|++++... .....+..+. ..+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 98887664 34688888854 3444444332 2466677776
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-12 Score=129.33 Aligned_cols=272 Identities=11% Similarity=0.143 Sum_probs=192.9
Q ss_pred CCCeeEEEEccCCCe-EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 343 GSNVMSMDFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~-lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
...|++++|--|++. ++...+.|..+............. .|+++. ......+|..++.. | ..|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~-d-g~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA-D-GTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc-C-CEEE
Confidence 357888888776653 333333666666666665554332 133222 23345566666653 3 3577
Q ss_pred EEeCCCeEEEEEecCCCcee-eeeeeecccCCEEEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeEEEEecC------
Q 001176 422 VAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 492 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~------ 492 (1132)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||.. ..+.+||++..+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 77889999999998543110 11123223 46777777777665 67779998 8999999999876654332
Q ss_pred -C--CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 493 -H--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 493 -h--~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
- .-+++++.|.+..+...+++++.-+.+|+||.+.++. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 2245667787765568999999999999999987665 4477778889999999999999999854 677999
Q ss_pred EeCCCCceeee-eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 569 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
+|++.++.... +.+..+ .++++..+|.+++++++|-|+.|||+|+.+.+++....... ..+++-+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666555 89999999999999999999999999999977766554332 345555543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-12 Score=143.79 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=146.4
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887643 469999999876432 3333455678999999994 3346677887666
Q ss_pred EE--CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 479 WD--VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 479 wd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
|. +..+. ...+..+........|+|++ ..|+..+ .+|...+|.++.. +....+..........+|+|||++|+
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 65 44443 55666666666777887754 6666555 3566777765432 22222333333445678999999998
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeeEEEEeCCCCCCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
..+..+ +...|++||+.+++....... . ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~~-g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRVG-GAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEccC-CcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 776422 244799999988875443322 1 235678999999988876433 3566666 3555555544332 5
Q ss_pred cceEEEcC
Q 001176 632 SPRLRFNK 639 (1132)
Q Consensus 632 v~~~~~s~ 639 (1132)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 66777876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-11 Score=125.37 Aligned_cols=229 Identities=14% Similarity=0.204 Sum_probs=159.8
Q ss_pred eEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCC--CCeEEE-----EeCCCcEEEEEccccee
Q 001176 841 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD--NNIIAI-----GMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~--~~~las-----g~~dg~v~iwd~~~~~~ 913 (1132)
++..|+.|..+.|--..+.+.+|+..+.+.+.. +-|...|+.+.+|| + ...||+ ++.-+.|+||.+.-...
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 689999999887766789999999987443222 22678899999999 5 344554 34556899998863221
Q ss_pred eeee---ccccCCeeEEEEcCCCCE---EEEEcCC---------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEE
Q 001176 914 KTKL---KGHQNRITGLAFSPTLNA---LVSSGAD---------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 914 ~~~l---~~h~~~V~~l~~spdg~~---l~s~~~D---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 978 (1132)
-..+ .-....=..+.|.+-|.- |++...| .++++.++++.. +...+... ++|.++.
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-----~~V~L~k~----GPVhdv~ 277 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-----VSVPLLKE----GPVHDVT 277 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-----EEEecCCC----CCceEEE
Confidence 1111 001112234778877753 2333333 368888887322 11111111 6899999
Q ss_pred ECCCCcEEEEEe---CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe---cCCcEEEEeCCCcceeccc
Q 001176 979 FHNDQTHLLVVH---ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF---CDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 979 ~s~dg~~l~~~~---d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~---~dg~i~vwd~~~~~~~~~~ 1052 (1132)
|+|+|+-+++.. -..+.+||++++.+..+. .++-+++.|+|.|++|+.++ ..|.|.|||+.+.+++..+
T Consensus 278 W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 278 WSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred ECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 999999888843 578999999998887764 56788999999999988765 4578999999998888776
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeC------CCcEEEEecCC
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS------DGAVHVVEPSD 1099 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------Dg~i~vW~~~~ 1099 (1132)
.. ...+-+.|+| ||.+++|++. |+.++||+..-
T Consensus 353 ~a-------------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 353 KA-------------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cc-------------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 52 2345789999 8888887764 68899999854
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-12 Score=144.73 Aligned_cols=236 Identities=12% Similarity=0.109 Sum_probs=150.9
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
++.+|...........+...+.+.+|||||+.++.+... +..|.+||+.+++... +..
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~ 245 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VAS 245 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ecc
Confidence 444554333333333477889999999999965544422 3469999998876432 222
Q ss_pred CCcCeEEEEEcCCCCeEEE-EeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCCc--EE
Q 001176 404 AAISVNRCVWGPDGLMLGV-AFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--IK 477 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg~--v~ 477 (1132)
+.+...+++|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+..+ .+|. |+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy 319 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIY 319 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEE
Confidence 3445567899999998764 45555 5999999887633 2445555567889999999 455444 4444 77
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++|+.+++.. .+..+.......+|+|++ +.|+..+.++ .|.+||+.++... .+. +........|+|||++++
T Consensus 320 ~~dl~~g~~~-~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 320 RVAASGGSAE-RLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred EEECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence 7787776643 332233344567887754 6776655433 6999999776544 333 223445679999999988
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
..+.. .+...|+++++. +.....+..+.. .+...+|+|
T Consensus 395 ~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 395 YATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 77643 345679999885 444455544332 455566765
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-12 Score=125.31 Aligned_cols=341 Identities=13% Similarity=0.236 Sum_probs=218.4
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
.++.++|+.+ .++....-|..+-+++.+.|.++++|-- +.++.-..+... ...+++++.+.++...|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceEE
Confidence 4566777776 7777777788888999999999999954 445544444322 234788999999999999999999988
Q ss_pred EEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccc
Q 001176 655 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 734 (1132)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1132)
-+.+...-......+
T Consensus 94 efs~sedfnkm~~~r----------------------------------------------------------------- 108 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLK----------------------------------------------------------------- 108 (404)
T ss_pred EEEhhhhhhhcchhh-----------------------------------------------------------------
Confidence 876643311110000
Q ss_pred cccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccc
Q 001176 735 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 814 (1132)
Q Consensus 735 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 814 (1132)
.| ..|...+..+.|+..-..+++.+.|..+. |...
T Consensus 109 -----------~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~--------------- 143 (404)
T KOG1409|consen 109 -----------DY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT--------------- 143 (404)
T ss_pred -----------hh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------
Confidence 00 12667788888888888888888886654 3221
Q ss_pred cccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEEC--CCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 815 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM--MTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 815 ~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
+.+.-+..... ....+++.+.-. +...|. .|.|.+-.+ ....++.++.+|.+.+++++|.| ..
T Consensus 144 ------e~~~~lg~Y~~-----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~ 209 (404)
T KOG1409|consen 144 ------ESGNRLGGYNF-----ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQ 209 (404)
T ss_pred ------ccCCcccceEe-----eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CC
Confidence 11111110000 111112222111 444554 455544433 45678899999999999999999 88
Q ss_pred CeEEEEeCCCcEEEEEcccce-eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeC-------
Q 001176 892 NIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA------- 963 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~------- 963 (1132)
++|.+|..|..+.+||+..++ ....+.+|.+.|..+...+--+.|++++.||.|.+|+++.........+..
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhC
Confidence 999999999999999997654 345688999999999998888999999999999999998654322111110
Q ss_pred -----------------CCCCC-C-CCCCceeEEECCCCcEEEEEeCCeEEEEeC--------CCCceeecCCCCCCCCC
Q 001176 964 -----------------PAGRQ-S-PLVGETKVQFHNDQTHLLVVHESQISVYDS--------KLECSRSWSPKDALPAP 1016 (1132)
Q Consensus 964 -----------------~~~~~-~-~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~--------~~~~~~~~~~~~~h~~~ 1016 (1132)
..-|. . ....+...+-+.-..+...+..-.+++-|. +...++.+ +.-...
T Consensus 290 qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p---hei~tg 366 (404)
T KOG1409|consen 290 QPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP---HEIKTG 366 (404)
T ss_pred chHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc---cccccc
Confidence 00000 0 001111112111222222244445665554 12112221 222457
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1017 i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
|++|.+-.+-.+|+|++.|..|+|||+..
T Consensus 367 ItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 367 ITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred eeEEEhhhhccceeecCCceEEEEEechh
Confidence 99999988888999999999999999975
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-12 Score=142.89 Aligned_cols=238 Identities=15% Similarity=0.147 Sum_probs=148.9
Q ss_pred CceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeeccccccccccccc
Q 001176 324 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 401 (1132)
Q Consensus 324 ~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1132)
..++..|...........+...+.+.+|||||+.++++...+ ..|.+||+.+++... +
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l 235 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------V 235 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------e
Confidence 344555543333333345778899999999999655544322 469999998886432 2
Q ss_pred CCCCcCeEEEEEcCCCCeEEE-EeCCCeEEEEEec--CCCceeeeeeeecccCCEEEEEEecCCCcEEEE-EEcCCCcEE
Q 001176 402 NDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMIK 477 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las-~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~-s~~~dg~v~ 477 (1132)
....+.+.+.+|||||+.|+. .+.+|...||.++ ++. .. .+..+...+....|+|||+. |+ +...++...
T Consensus 236 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~ 309 (427)
T PRK02889 236 ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQ 309 (427)
T ss_pred ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcE
Confidence 223445678999999998874 5678876777654 333 22 34445556677899999994 44 444456666
Q ss_pred EEEC--CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 478 VWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 478 vwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
+|.+ .+++.. .+..+.......+|+|+ |++|+..+.++ .|.+||+.+++.... .. ........|+|||+.
T Consensus 310 Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~ 384 (427)
T PRK02889 310 IYRMPASGGAAQ-RVTFTGSYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRY 384 (427)
T ss_pred EEEEECCCCceE-EEecCCCCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCE
Confidence 6654 444432 22222233445678774 47787766554 699999987664432 22 233467899999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 385 l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 385 ILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 99887533 3455777777 4555555544333 456667776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-08 Score=118.47 Aligned_cols=516 Identities=14% Similarity=0.161 Sum_probs=288.7
Q ss_pred cCeEEEEEcCCCCeEEE--EeCCC--eEEEEEecCCCceeeeeeee-----cccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 406 ISVNRCVWGPDGLMLGV--AFSKH--IVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las--~~~dg--~i~iwd~~~~~~~~~~~~l~-----~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
..+...+|.+..+.+.. +.... .|.+..............+. ...+.|.++.|.+|.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777788776554433 32222 34444444333222222332 2346899999999998 57777788999
Q ss_pred EEE----ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC---------------C--------CC
Q 001176 477 KVW----DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---------------Y--------LG 529 (1132)
Q Consensus 477 ~vw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~---------------~--------~~ 529 (1132)
.+. |..+... .....-...|.+++|+|+. .+|+.++.++++.+-..+ . ++
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 998 5444332 2222346789999999866 788888888888765311 0 00
Q ss_pred ceEEecC------------------------CCCeEEEEEEcCCCCEEEEEecCCC-C-CCeEEEEeCCCCceeeeeccc
Q 001176 530 SRVDYDA------------------------PGNWCTMMAYSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 530 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
+...+.+ ....-..++|-.||.++++.+.+.. + .+.+++|+-+ |.+..+-. .
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~ 254 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-P 254 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-c
Confidence 0000100 2224568899999999998876332 2 5789999965 66544443 2
Q ss_pred cCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeeEEEEeCC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 584 RKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..+--.+++|-|.|+.+++... ...|.+|.-+. -.-..+... .....|..+.|++|+..||....| .|.+|-.
T Consensus 255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~ 332 (928)
T PF04762_consen 255 VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTR 332 (928)
T ss_pred CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEe
Confidence 2223456899999999988653 45677777544 222233322 233478999999999999998766 4999987
Q ss_pred CCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccc
Q 001176 659 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 738 (1132)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1132)
.+- .......-
T Consensus 333 ~NY-HWYLKqei-------------------------------------------------------------------- 343 (928)
T PF04762_consen 333 SNY-HWYLKQEI-------------------------------------------------------------------- 343 (928)
T ss_pred eCC-EEEEEEEE--------------------------------------------------------------------
Confidence 665 22111100
Q ss_pred cccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC-CceEEeecccceeEEEeeccccCCCCCcccccccccc
Q 001176 739 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 739 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
.++ ....+..+.|+|. ...|...+.+|.+..+++.
T Consensus 344 -----------------------~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------ 379 (928)
T PF04762_consen 344 -----------------------RFS---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------ 379 (928)
T ss_pred -----------------------Ecc---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------
Confidence 000 0111222555553 2335555555666665542
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEee-CCCEEEEeeCCeEEEEECCCCeE---E--EEeeCCCCCeEEEEEeCCCC
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKV---M--TMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~-dg~~la~~sdg~i~vwd~~~~~~---~--~~~~~~~~~i~~l~~sp~~~ 891 (1132)
|+...+.. .+| |...+++.+..++.+-.+...-. + ..+. -...|.+++|++ ++
T Consensus 380 ~~v~~s~~-------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~ 438 (928)
T PF04762_consen 380 WDVSRSPG-------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SN 438 (928)
T ss_pred EEEEecCC-------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CC
Confidence 11111100 011 23344555555677766654321 1 2222 346799999999 67
Q ss_pred CeEEEEeCCCcEEEEEcccceee--------eeec----------cccCCeeEEEEcCCCCEEEEEcCC---CcEEEEEC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDEVK--------TKLK----------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWSI 950 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~~~--------~~l~----------~h~~~V~~l~~spdg~~l~s~~~D---~~i~iwd~ 950 (1132)
..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++++
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 66889999999999986543211 1111 123357788888777766665554 57888887
Q ss_pred CCcccc-cceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCcee--ecCCCCCCCCCeEEEEEccCC
Q 001176 951 DKWEKL-KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR--SWSPKDALPAPISSAIYSCDG 1026 (1132)
Q Consensus 951 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~i~~s~dg 1026 (1132)
...+.. ......... ..+..+...++...++. ..+|.+..++..+.... .+.. .-+...+....+.
T Consensus 519 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~----~c~~~~~~~~~~~ 588 (928)
T PF04762_consen 519 DDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ----PCPWMEVCQINGS 588 (928)
T ss_pred ccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC----CCcEEEEEEECCc
Confidence 443211 111111111 23444454555553444 77898887776333222 2211 2222333333333
Q ss_pred C---EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1027 L---LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1027 ~---~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
. .++.-+..|.+++ ++..++ ..++++..+ +.+|+-.+....+++.++.
T Consensus 589 ~~~~~~~GLs~~~~Ly~----n~~~la-----------------~~~tSF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 589 EDKRVLFGLSSNGRLYA----NSRLLA-----------------SNCTSFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred cceeEEEEECCCCEEEE----CCEEEe-----------------cCCceEEEE---cCEEEEEecCceEEEEECc
Confidence 3 3333344454543 233321 234455554 3567667778889999998
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-11 Score=125.23 Aligned_cols=335 Identities=15% Similarity=0.177 Sum_probs=206.4
Q ss_pred CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE-----Ec-----CC
Q 001176 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-----GD-----EF 607 (1132)
Q Consensus 538 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg 607 (1132)
.......++|++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.+.+|.+- .. .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33467889999999999885 556999999888644444433 47789999999988762 12 23
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
.+.+|++.++.....+..... .-++..|+.|..+.+ --..+.+.+|++.+-......+.....
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q--~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i-------------- 168 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQ--NGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGI-------------- 168 (566)
T ss_pred ceeeeeeccceehhheehhhh--cCcccccccchhhhh-hhhcceEEEEecCCccceeeeeeccce--------------
Confidence 477999999666666554332 226888998876543 233568999998764333333322111
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCC--CCcceEEecCC
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD--PSQIKALRLPD 765 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~--~~~~~~~~~~~ 765 (1132)
..+.++|.++.. +...+ .+ -.-|.-..+++|....... ....+.+.
T Consensus 169 -------------~~f~lSpgp~~~-----~vAvy-------vP----e~kGaPa~vri~~~~~~~~~~~~a~ksFF--- 216 (566)
T KOG2315|consen 169 -------------TMLSLSPGPEPP-----FVAVY-------VP----EKKGAPASVRIYKYPEEGQHQPVANKSFF--- 216 (566)
T ss_pred -------------eeEEecCCCCCc-----eEEEE-------cc----CCCCCCcEEEEeccccccccchhhhcccc---
Confidence 122333332100 00000 00 0012236788888773221 11112211
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
...=..+.|++-|.-|++.... |++.... ..-...++.+.+.. |.-....+.. .++|.++.|
T Consensus 217 ---kadkvqm~WN~~gt~LLvLast------dVDktn~----SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhdv~W 278 (566)
T KOG2315|consen 217 ---KADKVQMKWNKLGTALLVLAST------DVDKTNA----SYYGEQTLYLLATQ-GESVSVPLLK----EGPVHDVTW 278 (566)
T ss_pred ---ccceeEEEeccCCceEEEEEEE------eecCCCc----cccccceEEEEEec-CceEEEecCC----CCCceEEEE
Confidence 1222456677777655433221 0100000 00011112223333 4334444554 789999999
Q ss_pred eeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC---CcEEEEEcccceeeeeecc
Q 001176 846 SKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 846 s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~~~~~l~~ 919 (1132)
+|+|+-++++. -.++.|||+. +.++..+ ..++-+++-|+| .|++|+.++-+ |.|-|||+.+.+++..+..
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 99999887775 4789999985 5555544 467788999999 88988887754 8999999999999988876
Q ss_pred ccCCeeEEEEcCCCCEEEEEcC------CCcEEEEECCCc
Q 001176 920 HQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDKW 953 (1132)
Q Consensus 920 h~~~V~~l~~spdg~~l~s~~~------D~~i~iwd~~~~ 953 (1132)
-.. +-..|+|||.+++|+.. |+.++||+....
T Consensus 355 ~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 554 44799999999998874 678999999763
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=150.68 Aligned_cols=219 Identities=15% Similarity=0.169 Sum_probs=153.6
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
.+++. |...-+|++||-+.+ .|++|+..|.|+++++.+|..... ..+|..+|+.+.=|.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSV 1153 (1516)
T ss_pred chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccC
Confidence 45566 788999999999998 699999999999999999987654 678999999999999
Q ss_pred CCCeEEEEeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cC
Q 001176 416 DGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EG 492 (1132)
Q Consensus 416 dg~~las~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~ 492 (1132)
||..+.+.+.-. ...+|++.+-. ...+.+. .-.++.|+..... . +.|.....+.+||++++..+.++ .+
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred CcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH-H-HhcccccceEEEecccCcHHHHhcCc
Confidence 999877665433 47899987622 2222222 3467899876553 2 33444457899999999877663 22
Q ss_pred ---CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 493 ---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 493 ---h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
....-+...|+|.. .+++- || .+||++..+.+..+..-. .--.-.|+|.|..++..+ .+|
T Consensus 1226 ~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIw 1288 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIW 1288 (1516)
T ss_pred chhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhh
Confidence 22223566677764 44442 33 479999876665544322 112335899999998864 479
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1132)
|+++.+.+++...-.+ ..+.|+..|+.++..
T Consensus 1289 D~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1289 DMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred hhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 9999988877765543 457788888776653
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-10 Score=123.97 Aligned_cols=318 Identities=12% Similarity=0.177 Sum_probs=204.5
Q ss_pred cceeeecCCCCCCceecc------CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcC-----------CCcEEEEecC
Q 001176 312 SDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVG 374 (1132)
Q Consensus 312 v~~~~~~~~g~~~~~~~~------d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~-----------dg~v~iwd~~ 374 (1132)
-.-|.|||-|.++++... +......++.+-|. .|.-+.|||+.++ |+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEcc
Confidence 345889999999887643 34444555566665 7999999999995 666432 2579999999
Q ss_pred CCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEE
Q 001176 375 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 454 (1132)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~ 454 (1132)
+|..... |.+. .+....-.-+.||.|++++|--..+ .|.||+..+-..+.. ..+ .-..|.
T Consensus 291 tG~lkrs--F~~~--------------~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRS--FPVI--------------KSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIR 350 (698)
T ss_pred ccchhcc--eecc--------------CCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCcccc
Confidence 9987653 2211 1111112236899999999987665 499999876433221 111 234688
Q ss_pred EEEEecCCCcEEEEEEcC-----CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE----------ecCCe
Q 001176 455 DIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGK 519 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~ 519 (1132)
...|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+..+-..+|.+|+.- +.-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 999999988 6654332 2356677777777776654443 444444445566676543 12223
Q ss_pred EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-C---ceeeeeccccCCceEEEEEeC
Q 001176 520 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
+.|+.++........-.-...|...+|-|.|+.+++.+.. +...++.+|.+++ . +++..+.. ...+.+.|+|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsP 502 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSP 502 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcC
Confidence 5566666554444333345578899999999988766532 3466788888773 2 23334433 2567799999
Q ss_pred CCCEEEEE---EcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCc
Q 001176 596 TRNRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 661 (1132)
Q Consensus 596 ~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~ 661 (1132)
.|++++.+ |..|.+.++|..-.....+- ...+ ...+.+.|.|.|+++++++. |..-++|+....
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99998885 46789999998743322221 1122 24678999999999999876 445566766543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=134.26 Aligned_cols=218 Identities=10% Similarity=0.059 Sum_probs=150.1
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc---CCCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
..|.+||.++... + .+..|...+.+.+|+|||+ .|+..+ .+..|.+||+.+++. ..+..+.+.+...+|+
T Consensus 182 ~~l~~~d~dg~~~-~---~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANV-R---YLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCc-E---EEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEEC
Confidence 4788888866432 2 3556888999999999999 455443 346899999988875 3455566677788898
Q ss_pred ccCCccEE-EEEecCCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 504 HKESIQFI-FSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 504 ~~~~~~~l-~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
|++ ..| ++.+.++. |.+||+.++.. ..+..+.......+|+|||+.|+..+. .++...|+++|+.+++.....
T Consensus 255 PDG--~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~-~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 255 PDG--RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESD-RSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCC--CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEEC-CCCCCeEEEEECCCCCeEEee
Confidence 755 544 56666665 66778776544 344545556678999999999987763 344567999998776554333
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC------C
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD------N 651 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g 651 (1132)
. ... .+....|+|+|+.++..+.+ ..|.+||+.++.. ..+... . .+....|+|||+.|+..+.+ .
T Consensus 331 ~-~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 331 F-GGG-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred c-CCC-cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 2 222 45668899999999886533 3688899866543 333321 1 46788999999998876553 2
Q ss_pred cEEEEEcCCc
Q 001176 652 GIKILANSDG 661 (1132)
Q Consensus 652 ~i~iw~~~~~ 661 (1132)
.+.++++..+
T Consensus 405 ~L~~~dl~g~ 414 (435)
T PRK05137 405 KLYTVDLTGR 414 (435)
T ss_pred eEEEEECCCC
Confidence 5777777554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-11 Score=127.56 Aligned_cols=201 Identities=18% Similarity=0.196 Sum_probs=138.1
Q ss_pred cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEcC
Q 001176 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 448 ~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~ 526 (1132)
.|...-+.|..+|||++ +++||...-.|++||+.+-... |..| ...+..+.+. +.|-..++.-..|.+|.+-..-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46677889999999997 7899999999999998876543 3333 2333333222 1122344555566666554211
Q ss_pred CCCceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc
Q 001176 527 YLGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605 (1132)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1132)
.......+.. .-..++++. ...+++.++ ...|+-+++..|+.+..|..... .++++..++....|++|+.
T Consensus 125 G~hy~~RIP~---~GRDm~y~~~scDly~~gs-----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 125 GRHYRTRIPK---FGRDMKYHKPSCDLYLVGS-----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred CeeeeeecCc---CCccccccCCCccEEEeec-----CcceEEEEccccccccccccccc-cceeeeecCccceEEeccc
Confidence 1101111111 123444443 334444443 23499999999999998887665 8999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeCCC---------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 606 EFQIKFWDMDNMNMLTTVDADG---------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+|.|.+||.+....+..+.... ....|+++.|+.+|-.+++|+.+|.+.|||+.+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 9999999999887776665322 2345899999999999999999999999999776
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-10 Score=118.18 Aligned_cols=360 Identities=13% Similarity=0.156 Sum_probs=222.4
Q ss_pred EEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEE
Q 001176 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 600 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1132)
.+|...+......+....-++..+++||.|.+|++... ..|.+|+...+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeecC---CceecccCccccee
Confidence 34544444444444445668889999999999998753 34999998877655555432 58889999999999
Q ss_pred EEEEcCC---------------eEEEEECCCCeeEEEEeCCCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 601 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 601 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.+-+..+ .+.+||..++..+..+.......... -+.|+-+..++|-. ....+.++++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 9876443 49999999999998887654421233 67888888777655 3347888886 33110
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
.+... .+
T Consensus 165 -----~~p~~--------------~l------------------------------------------------------ 171 (561)
T COG5354 165 -----EHPFK--------------NL------------------------------------------------------ 171 (561)
T ss_pred -----cCchh--------------hc------------------------------------------------------
Confidence 11000 00
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCc--eEEe-----ecccceeEEEeeccccCCCCCcccccccccc
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~-----~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
....|....++|.|. .|+. .+..+.+++|.+.....
T Consensus 172 -----------------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-------------- 214 (561)
T COG5354 172 -----------------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-------------- 214 (561)
T ss_pred -----------------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe--------------
Confidence 011233333333321 1111 12344555554431110
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe------------eCCeEEEEECCCCeEEEEeeCCCCCeEEEE
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA------------SGGKVSLFNMMTFKVMTMFMSPPPAATFLA 885 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 885 (1132)
+....+. .-.-..+.|.+.|+++..- +...+.|+++....+ .....-.++|...+
T Consensus 215 -------l~tk~lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~ 281 (561)
T COG5354 215 -------LVTKNLF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFT 281 (561)
T ss_pred -------eeeeeeE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeee
Confidence 0000000 1111345566666655432 124588888874333 33335678999999
Q ss_pred EeCCCCCeEEE--EeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC---CcEEEEECCCccccccee
Q 001176 886 FHPQDNNIIAI--GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRF 960 (1132)
Q Consensus 886 ~sp~~~~~las--g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D---~~i~iwd~~~~~~~~~~~ 960 (1132)
|.| .++.+++ |-.+-.+.++|+... +...+ ....=..+.|||.+++++.++-| |.+.+||....-. +
T Consensus 282 W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~ 353 (561)
T COG5354 282 WEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----V 353 (561)
T ss_pred ecc-cCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE----E
Confidence 999 4444433 457788999998765 33332 33444668999999999998876 6799999987543 2
Q ss_pred eeCCCCCCCCCCCceeEEECCCCcEEEEE-------eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 961 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
+....+ ...+-+.|+|||+++.+. .|..+.+||+.+.... ..+.+.|.|.|++.-+.+
T Consensus 354 ~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 354 AGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred EEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeec
Confidence 323333 234667899999998883 2678999999665532 456678888888877777
Q ss_pred cCC
Q 001176 1034 CDG 1036 (1132)
Q Consensus 1034 ~dg 1036 (1132)
.+.
T Consensus 419 s~~ 421 (561)
T COG5354 419 SCP 421 (561)
T ss_pred cCC
Confidence 655
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-09 Score=110.92 Aligned_cols=278 Identities=11% Similarity=0.114 Sum_probs=183.2
Q ss_pred cCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccc---ceeEEEeeccccCCCCCcccccccccc
Q 001176 741 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 741 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
+..|.+|++.+........ .+ .......+-++++|+++.|.++..+ |.+..|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~--~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL--QL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchh--hh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 5789999998432211111 11 2255678899999999998887654 66666655
Q ss_pred ccCCCcCccc---ccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCC-CeEEEE--eeCCCCC---------
Q 001176 818 WQPPSGTLMT---NDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA--------- 880 (1132)
Q Consensus 818 ~~~~~~~~~~---~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~--------- 880 (1132)
|.++|.+.. ..+. ..+-+-++++++|++|+++. .|.|.++-++. |.+... ...|.+.
T Consensus 72 -D~~~G~Lt~ln~~~~~-----g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~ 145 (346)
T COG2706 72 -DPDDGRLTFLNRQTLP-----GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESP 145 (346)
T ss_pred -cCCCCeEEEeeccccC-----CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCC
Confidence 334443221 1122 22337899999999999998 68999999965 433222 2224444
Q ss_pred -eEEEEEeCCCCCeEEEEeC-CCcEEEEEcccceeeeeec---cccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCc-
Q 001176 881 -ATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW- 953 (1132)
Q Consensus 881 -i~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~~- 953 (1132)
+.+..|.| ++++|++.+- --.|.+|++..|++...-. .....-..|.|+|++++..... -+++|.+|..+..
T Consensus 146 h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 146 HVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred ccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 78899999 8888887642 2379999999876543211 2344568899999999877665 5899999999874
Q ss_pred -ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC--CeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCE
Q 001176 954 -EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--SQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLL 1028 (1132)
Q Consensus 954 -~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~ 1028 (1132)
+......+..++..-.......++.+++||++|.+++. ..|.+|.+ .+..+........+...-+...|+++|++
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 32222222222222222356678999999999999853 46888888 44444443333333455678899999999
Q ss_pred EEEEecCC-cEEEEeC--CCcce
Q 001176 1029 VYAGFCDG-AIGVFDA--ETLRF 1048 (1132)
Q Consensus 1029 las~~~dg-~i~vwd~--~~~~~ 1048 (1132)
|+++.+++ .|.+|.. ++|++
T Consensus 305 Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 305 LIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEEccCCCcEEEEEEcCCCceE
Confidence 99888765 4777765 45554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-09 Score=110.37 Aligned_cols=256 Identities=14% Similarity=0.189 Sum_probs=173.8
Q ss_pred CCCeeEEEEeeCCCEEEEee----CCeEEEEECCC--CeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeCC-CcEEEEE
Q 001176 837 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMED-SSVQIYN 907 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s----dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-g~v~iwd 907 (1132)
....+-++++|++++|.++. +|.|..|.++. |++ +........+-+.+++++ ++++|+++... |.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 66778899999999998885 36688877764 543 222233334458899999 89999988754 7899999
Q ss_pred ccc-ceeeee--eccccCC----------eeEEEEcCCCCEEEEEc--CCCcEEEEECCCcccccceeeeCCCCCCCCCC
Q 001176 908 VRV-DEVKTK--LKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972 (1132)
Q Consensus 908 ~~~-~~~~~~--l~~h~~~----------V~~l~~spdg~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 972 (1132)
+.. |.+... +..|.+. +-...+.|++++|++.. .| .|.+|++..+.......... .+..
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v-----~~G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV-----KPGA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc-----CCCC
Confidence 865 432221 2235444 77889999999999875 45 49999999776444333333 2336
Q ss_pred CceeEEECCCCcEEEEE--eCCeEEEEeCCC--CceeecCCC------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 001176 973 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSPK------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1041 (1132)
Q Consensus 973 ~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~------~~h~~~i~~i~~s~dg~~las~~~-dg~i~vw 1041 (1132)
+...++|+|++++..+. -+++|.+|..+. ..+..+... -.-.....+|.+++||++|.++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 78999999999998884 379999999833 333322111 111456778999999999988753 3468888
Q ss_pred eCCCcc-eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-CcEEEEecCCCcccccCCC
Q 001176 1042 DAETLR-FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPSDAELKWGGTP 1108 (1132)
Q Consensus 1042 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-g~i~vW~~~~~~~~~~~~~ 1108 (1132)
.+.... .+..+. ....+...+..+.+.| ++++|++++.| ..|.++.+....+.+....
T Consensus 272 ~V~~~~g~L~~~~--------~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 272 SVDPDGGKLELVG--------ITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEcCCCCEEEEEE--------EeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 775432 222211 1224455678899999 77888777766 4899998877665555443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-10 Score=113.99 Aligned_cols=190 Identities=14% Similarity=0.274 Sum_probs=123.0
Q ss_pred cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----EEEEecCCC------------CCeEEEEeeccCCccEEE
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 512 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~~~~l~ 512 (1132)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|.+.++...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999643221 223344443 457888999888888999
Q ss_pred EEecCCeEEEEEcCCCCceEE-----ecCCCCeEEEEEE---cCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 513 STAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
..+.|.+|++|.+........ .......++++.. .+....+ . ..+.+.+...+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v-e------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV-E------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee-e------------------eeeeeeccccc
Confidence 999999999998876544330 1111112222221 1111000 0 12233443333
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-eeEE--EEeCCC---CCCCcceEEEcC-CCCEEEEEeCCCcEEEEE
Q 001176 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLT--TVDADG---GLPASPRLRFNK-EGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~--~~~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 657 (1132)
.--|++++++.|...++++ .|=.|.+|++.-. +... .++.+. -..-|++..|+| .-++++..+..|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 3368999999999988887 4778999998632 2222 222211 012478889999 556788888899999999
Q ss_pred cCCc
Q 001176 658 NSDG 661 (1132)
Q Consensus 658 ~~~~ 661 (1132)
++..
T Consensus 243 mR~~ 246 (433)
T KOG1354|consen 243 MRQS 246 (433)
T ss_pred chhh
Confidence 8644
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-11 Score=119.87 Aligned_cols=247 Identities=10% Similarity=0.128 Sum_probs=180.5
Q ss_pred CCcCeEEEEEcCCCC--eEEEEeCCCeEEEEEecCCCceeee---eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 404 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 404 h~~~V~~v~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~---~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
....|..++|.-|++ .+...+.+..+..+.+......... .......++|..++.. |+ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 445788888877654 4444446667777777665543321 1223345677777664 44 4889999999999
Q ss_pred EECCCCe----EEEEecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEcCCCCceEEecCCC---------CeEEE
Q 001176 479 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPG---------NWCTM 543 (1132)
Q Consensus 479 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~---------~~v~~ 543 (1132)
|....+. .+..+..+ ..+..+.-++.. -.++++|+.. ..+.+||+...+++..-..-. -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987433 22333322 345555444332 2677889999 889999999875555332211 16788
Q ss_pred EEEcCC--CCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 544 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 544 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+.|.+. ...+++++. -+++++||.+.++ ++..|..... ++.++...|+++++++|..-|.+..+|.++++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999887 788999874 7789999998764 6666766555 8999999999999999999999999999999888
Q ss_pred EE-EeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcce
Q 001176 621 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 621 ~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
.. +.+.. +.|.++..+|.++++++++-|..|||+|+.+.+.
T Consensus 283 g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 283 GCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 76 55543 4899999999999999999999999999998633
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-08 Score=112.99 Aligned_cols=231 Identities=12% Similarity=0.165 Sum_probs=147.1
Q ss_pred EEEEeCC----CeEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----CCcEEEEECCCC--eE--
Q 001176 420 LGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DKMIKVWDVVAG--RK-- 486 (1132)
Q Consensus 420 las~~~d----g~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----dg~v~vwd~~~~--~~-- 486 (1132)
+++|+.. +.|.+|+++.. ..+...... .-......++++|+++ +|++... ++.|..|++... ++
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~--~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGR--RLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSS--EEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCC--EEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 3455554 68999988332 333322222 2344567899999999 5665554 679999988763 43
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCCCceEEe---c-----------CCCCeEEEEEEcCCCC
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDY---D-----------APGNWCTMMAYSADGT 551 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~---~-----------~~~~~v~~~~~s~~~~ 551 (1132)
+.+..........+++++++ .+|+++. .+|.|.++++.....+... . .......++.++|+|+
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g--~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDG--RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEESSSCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eeeeccCCCCcEEEEEecCC--CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 33333234445667776654 6776665 5999999999875443321 1 1234678999999999
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCc--e--eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC--CCe--eEEE
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGA--I--KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--NMN--MLTT 622 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~--~~~~ 622 (1132)
++++... +...|++|++.... + ...+........+.+.|+|+++++++.. .++.|.++++. ++. .+..
T Consensus 157 ~v~v~dl---G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 157 FVYVPDL---GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EEEEEET---TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEec---CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 9998764 45579999987654 3 2334444444688899999999988866 67889999988 443 2333
Q ss_pred EeCC----CCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 623 VDAD----GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 623 ~~~~----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
+... ........++++|||++|+++.. ++.|.+|++
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 3221 11124568999999999887764 556777776
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.6e-11 Score=118.21 Aligned_cols=111 Identities=19% Similarity=0.308 Sum_probs=91.5
Q ss_pred CCCeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC---CcEEEEEccc
Q 001176 837 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 910 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~iwd~~~ 910 (1132)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++|+.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999887653 5789999996 66666664 56788999999 89999988744 6799999998
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcC------CCcEEEEECCCc
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDKW 953 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~------D~~i~iwd~~~~ 953 (1132)
.+.+.... |. .++.++|||||+++++++. |..++||+....
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 88887765 33 4789999999999999874 788999999753
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-10 Score=116.25 Aligned_cols=314 Identities=10% Similarity=0.071 Sum_probs=205.5
Q ss_pred CcceeeecCCCCCCceecc------CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCC---------------cEE
Q 001176 311 QSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 369 (1132)
Q Consensus 311 ~v~~~~~~~~g~~~~~~~~------d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg---------------~v~ 369 (1132)
++..+.+||.|.+++.... +......+..+.| ..|..+.|||.++ +|.+-+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeec-CCceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 5667899999998876533 2233334444444 4799999999999 587765433 488
Q ss_pred EEecCCCccccccceeeeecccccccccccccCCCCcC--eE-EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeee
Q 001176 370 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI 446 (1132)
Q Consensus 370 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l 446 (1132)
+||..+|..+.... +-..+ .+ -+.|+-|.+++|=- ....++|+++...-.......+
T Consensus 112 vwd~~sg~iv~sf~-------------------~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 112 VWDIASGMIVFSFN-------------------GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred EEeccCceeEeecc-------------------ccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc
Confidence 99998887765421 11112 33 57899998887755 3346999997322222222222
Q ss_pred ecccCCEEEEEEecCCCcEEEEE-----EcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-------
Q 001176 447 DAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST------- 514 (1132)
Q Consensus 447 ~~h~~~v~~v~~s~d~~~~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~------- 514 (1132)
. ...|....|+|.+..-.|+. .+.++++++|.+..++.+.+-.-....-..+.|.+.+ .+|+.-
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ks 247 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKS 247 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeec
Confidence 2 35688999999865423443 4678899999998777665433222333445565544 333221
Q ss_pred ----ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEE
Q 001176 515 ----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 590 (1132)
Q Consensus 515 ----s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1132)
-....+.++++......... ...++|...+|+|.++.+++++. -....+.++|++.. ....+.. + .-+.
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe--~-~rNT 320 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPE--Q-KRNT 320 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCC--c-cccc
Confidence 12355778887744444433 55779999999999999887763 24667889998855 3333322 2 2345
Q ss_pred EEEeCCCCEEEEEEc---CCeEEEEECCCCeeEE-EEeCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCC
Q 001176 591 VQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 660 (1132)
Q Consensus 591 ~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~ 660 (1132)
+.|+|.+++++.++- .|.+-+||..+..... .+.+. ...-+.|+||++++.+... |..+.+|++..
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 779999999999874 4789999988755444 55543 3456789999999887753 77899999865
Q ss_pred c
Q 001176 661 G 661 (1132)
Q Consensus 661 ~ 661 (1132)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 4
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-10 Score=128.37 Aligned_cols=226 Identities=10% Similarity=0.047 Sum_probs=141.0
Q ss_pred CCCCeeEEEEccCCCe--EEEEEcCCC--cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 342 QGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~--lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
....+.+-+|||||+. ++++...+| .|.+.++.+++... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 5566788899999975 333554443 57777887775432 22234455678999999
Q ss_pred CeEEEEeC-CC----eEEEEEecCCC--ceeeeeeeecccCCEEEEEEecCCCcEEEEE-EcCCCcEEEE--ECCC-CeE
Q 001176 418 LMLGVAFS-KH----IVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGDDKMIKVW--DVVA-GRK 486 (1132)
Q Consensus 418 ~~las~~~-dg----~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s-~~~dg~v~vw--d~~~-~~~ 486 (1132)
+.||..+. +| .+.+|++.++. .... ...++.+.....+|+|||+. |+. ...+|...+| ++.. +..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccccc
Confidence 99887653 22 34457776532 2221 12222334567899999994 444 3456655555 4432 333
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
...+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++.... ......+....|+|||+.|+..... .+.
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~-~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGN-SNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECC-CCC
Confidence 45555555667788898765 667665443 4689999987765443 3333456789999999998865532 346
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
..|+++|+..++........ . .+...+|+|-.
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~~ 426 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGS-G-EKRFPSWGAFP 426 (428)
T ss_pred ceEEEEECCCCCEEEeecCC-C-cccCceecCCC
Confidence 77999999887755444322 1 45567777643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-10 Score=125.24 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=141.1
Q ss_pred CCCcCeEEEEEcCCCCeEE---EEeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----C
Q 001176 403 DAAISVNRCVWGPDGLMLG---VAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D 473 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~la---s~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d 473 (1132)
.....+.+-+|||||+.++ +...+| .|.+.++.+++... +....+.....+|+|||+. ++++... |
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~d 256 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPD 256 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 3455667889999998532 343343 57788888775433 2233445567899999995 2333322 3
Q ss_pred CcEEEEECCCC---eEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEc--CC-CCceEEecCCCCeEEEEEE
Q 001176 474 KMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLY--DY-LGSRVDYDAPGNWCTMMAY 546 (1132)
Q Consensus 474 g~v~vwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~--~~-~~~~~~~~~~~~~v~~~~~ 546 (1132)
..+.+|++..+ +......++.......+|+|++ ..|+..+ .+|...+|.+ .. +.....+......+....|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 34455777653 3333332333344667887754 6666554 5676566644 32 2334445445556778999
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCCeeEEEE
Q 001176 547 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~ 623 (1132)
||||+.|+..+.. ++...|++||+.+++....... .. .+....|+|||+.|+... ....|+++|+.+++.....
T Consensus 335 SPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 9999999877642 2456799999998876543332 22 456789999999887644 2467899999887765544
Q ss_pred eCCCCCCCcceEEEcCCC
Q 001176 624 DADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~ 641 (1132)
... ..+...+|+|-.
T Consensus 412 ~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGS---GEKRFPSWGAFP 426 (428)
T ss_pred cCC---CcccCceecCCC
Confidence 322 245677888743
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=115.47 Aligned_cols=162 Identities=18% Similarity=0.327 Sum_probs=114.8
Q ss_pred EEEEEcCCCCeEEEEeC----------CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 409 NRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~----------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
..+.|+|+|++|+.-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999998776432 2346667664433222222232 345799999999999755666777889999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
||++ ++.+..+. ...++.+.|+|.+ ++|++++.+ |.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777764 5678899998865 888888754 679999999666555443 335789999999999998
Q ss_pred EecC--CCCCCeEEEEeCCCCceeee
Q 001176 556 CGTS--KEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 556 ~~~~--~~~~~~i~~wd~~~~~~~~~ 579 (1132)
+... ...++.++||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8742 1235668999975 555544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-08 Score=113.65 Aligned_cols=247 Identities=15% Similarity=0.182 Sum_probs=163.0
Q ss_pred CcCeEEEEEcCCCCeEEEEeC----CCeEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 405 AISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~----dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
......++++|++++|.+... ++.|..|++... ..+...............++++|+++. ++++...+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 345667999999999988866 579999999875 444443344333445678999999994 34444569999999
Q ss_pred ECCC-CeEEEE---ec----------CCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCc-e---EEe-cCCCC
Q 001176 480 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGS-R---VDY-DAPGN 539 (1132)
Q Consensus 480 d~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~-~---~~~-~~~~~ 539 (1132)
++.. |..... +. .......++.++|++ +++++. -....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 544322 21 123456788887754 655554 3456899999987662 2 122 23455
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC--CCce--eeeeccc----cC-CceEEEEEeCCCCEEEEEE-cCCeE
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQI 609 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~i 609 (1132)
..+.++|+|+++++++... ..+.|.++++. ++.. +...... .. .....+.++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988764 57789999887 4432 2222211 11 1467799999999988865 67889
Q ss_pred EEEECC--CCe--eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 001176 610 KFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 659 (1132)
Q Consensus 610 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 659 (1132)
.+|+++ +++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999984 233 3334433222 4689999999999998874 6789998764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-10 Score=127.54 Aligned_cols=222 Identities=13% Similarity=0.068 Sum_probs=141.0
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--E
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--I 476 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~--v 476 (1132)
..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++. |
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 3466788999999999999876543 358889998875422 2222233457899999995 3344566664 7
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
++||+.+++. ..+..+.......+|+|++ ..|+..+ .++. |.++|+.+++.. .+..........+|+|||++|
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 8889887764 4555565566778888754 5565544 3444 555666655433 232233334567899999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc-CC--eEEEEECCCCeeEEEEeCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+..+.. .+...|.++|+.+++........ ......|+|+|+.++..+. ++ .+++++. ++.....+..+.+
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 23446788898887653322221 1223579999998877553 33 4777787 4555555554322
Q ss_pred CcceEEEcC
Q 001176 631 ASPRLRFNK 639 (1132)
Q Consensus 631 ~v~~~~~s~ 639 (1132)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466777876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=126.91 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=142.5
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cE
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 476 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v 476 (1132)
..+...+...+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999877643 369999998875432 2233345567899999995 333555555 68
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
++||+.+++. ..+..+........|+|++ ..++..+ .+| .|.++|+.+++... +...........|+|||+++
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889988765 3455566566677887754 5555444 344 46677776655332 22223334467899999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeeEEEEeCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..+++++.... ....+..+. .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 877642 23446899999887653322221 12245899999998876633 35777777543 333444332 2
Q ss_pred CcceEEEcC
Q 001176 631 ASPRLRFNK 639 (1132)
Q Consensus 631 ~v~~~~~s~ 639 (1132)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-10 Score=129.88 Aligned_cols=237 Identities=13% Similarity=0.087 Sum_probs=145.8
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
++..|...........+...+...+|||||++++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 3333433333333445778899999999999766655433 368899998876432 222
Q ss_pred CCcCeEEEEEcCCCCeEEE-EeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEE
Q 001176 404 AAISVNRCVWGPDGLMLGV-AFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 478 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~v 478 (1132)
..+.+...+|||||+.|+. .+.+| .|.+||+.++... .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 3344557899999998875 44444 6888899886533 24445556677899999995 233333333 6778
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
+|+.+++... +...........|+|++ ..++..+. ++ .|.+||+.++..... .. ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEE
Confidence 8888776433 22122223345677654 66666554 33 578889887654332 22 222235689999999987
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
.+.. .+...+++++.. +.....+..... .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 235568888875 333344443322 455566665
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-09 Score=112.55 Aligned_cols=239 Identities=11% Similarity=0.050 Sum_probs=151.1
Q ss_pred EeeCCCEEEEeeC-----------CeEEEEECCCCeEEEEeeCCCC-------CeEEEEEeCCCCCeEEEEe-C-CCcEE
Q 001176 845 LSKNDSYVMSASG-----------GKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 904 (1132)
Q Consensus 845 ~s~dg~~la~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~~~~~lasg~-~-dg~v~ 904 (1132)
+||||+.++++.. +.|.+||..+++.+..+..... ....++++| +|++|.+.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998877643 6799999999999988875332 234789999 888887665 3 68999
Q ss_pred EEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC-CC
Q 001176 905 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 983 (1132)
Q Consensus 905 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg 983 (1132)
+.|+.+++.+..+.--. ...-...+. ...++- +.||......+.+.............+...+.. ..-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~--~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI--NHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecC-CccEEE-eecCceEEEEecCCCceEEeeeeeecCCccccc--cCCceEcCCC
Confidence 99999999988876422 111122222 222222 234444443333222111111111111000000 0114455 89
Q ss_pred cEEEEEeCCeEEEEeCCCC------ceeecCCC----CCCCCCeEEEEEccCCCEEEEEe----------cCCcEEEEeC
Q 001176 984 THLLVVHESQISVYDSKLE------CSRSWSPK----DALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1043 (1132)
Q Consensus 984 ~~l~~~~d~~v~vwd~~~~------~~~~~~~~----~~h~~~i~~i~~s~dg~~las~~----------~dg~i~vwd~ 1043 (1132)
+++.++..|.|.+.|+.+. ....+... .-..+.+.-+++++|++++++.. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 9999988899999996221 11111111 01233445599999999988743 2257999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC-eEEEEe-CCCcEEEEecCCCcc
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~-~Dg~i~vW~~~~~~~ 1102 (1132)
.+++.+.++... ..+..++++| |++ +|++.. .++.|.+.|+.+++.
T Consensus 287 ~t~kvi~~i~vG------------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 287 KTGKRLRKIELG------------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCeEEEEEeCC------------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999999887522 4677899999 666 777655 688999999999873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-08 Score=107.86 Aligned_cols=203 Identities=15% Similarity=0.113 Sum_probs=121.4
Q ss_pred eEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-ceee-e
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVK-T 915 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~-~ 915 (1132)
..++++|||+++++.. +..|.+.|+.+++.+.++.... ...-...++ +..+ +-+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3567788888777664 5778888888888877776533 111122222 2221 123344433333221 1111 1
Q ss_pred ---eeccccCCee-EEEEcC-CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC----CCCCCceeEEECCCCcEE
Q 001176 916 ---KLKGHQNRIT-GLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ----SPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 916 ---~l~~h~~~V~-~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l 986 (1132)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+...+.............. -.......++++++|+++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111001100 003455 8887776666 99999997654432222222111100 011344459999999999
Q ss_pred EEEe---C--------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCcceeccc
Q 001176 987 LVVH---E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 987 ~~~~---d--------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~-~las~~-~dg~i~vwd~~~~~~~~~~ 1052 (1132)
.+.. . +.|.++|. +.+.+..+.. ...+..++|+|||+ +|++.+ .++.|.++|+.+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 1 57999999 6677776654 45899999999999 888766 5788999999999998887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-10 Score=129.21 Aligned_cols=223 Identities=13% Similarity=0.101 Sum_probs=137.3
Q ss_pred ecCCCCeeEEEEccCCCeEEEEEcCCC--cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 340 LNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 340 l~h~~~V~~~~~spdg~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
..+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+|||||
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPDG 273 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCCC
Confidence 346778999999999997665544443 58888988776432 11122234468999999
Q ss_pred CeEEE-EeCCCe--EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecC
Q 001176 418 LMLGV-AFSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 418 ~~las-~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~ 492 (1132)
+.|+. .+.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|+++|+.+++... +..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-LTF 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-Eec
Confidence 98875 455664 777788776532 24445556778899999995 333443344 56777887776533 222
Q ss_pred CCCCeEEEEeeccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
........+|+|++ +.|+..+. ++. |.++|+.++.... +... .......|+|||+.|+..... ++...++++
T Consensus 348 ~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEEEE
Confidence 22223446777754 56655544 443 5556766654432 2221 122345899999998876642 345568888
Q ss_pred eCCCCceeeeeccccCCceEEEEEeC
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
+. +|.....+..... .+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCCC-CcCCCccCC
Confidence 87 4665566654433 456677776
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=126.53 Aligned_cols=210 Identities=13% Similarity=0.055 Sum_probs=139.4
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--c
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 475 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~ 475 (1132)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 33466678999999999999987654 479999999875432 3345566778999999985 334555444 5
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
|++||+.++.. ..+..+........|++ ++..|+.++. ++ .|.++|+.+++. ..+..+......+.|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 88999887764 34444555555667876 4466665554 33 577777765543 344445566778899999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeeEEEEe
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (1132)
++.+..+. +...|.+||+.++.... +.... ......|+|++++|+..+.++ .+++.+.. ++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 98876532 24479999998765432 22221 234468999999988876543 45555544 44444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-10 Score=111.74 Aligned_cols=263 Identities=12% Similarity=0.176 Sum_probs=174.9
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeee---cccccccccccccCCCCcCeEEEEEcCCC
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWD---ISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
...+-|.++.|...|. +||||..+|.|.++.-..... . .++.+. ..++...+... -.-...|..+.|.+++
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkS--leieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKS--LEIEEKINKIRWLDDG 96 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhh--hhhhhhhhhceecCCC
Confidence 3456899999999999 699999999999997543321 0 111110 00000000000 0134578899999976
Q ss_pred C--eEEEEeCCCeEEEEEecCCCcee--------------------------------eee-eeecccCCEEEEEEecCC
Q 001176 418 L--MLGVAFSKHIVHLYTYNPTGELR--------------------------------QHL-EIDAHVGGVNDIAFAHPN 462 (1132)
Q Consensus 418 ~--~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~-~l~~h~~~v~~v~~s~d~ 462 (1132)
. .+...+.|.+|++|.+....... +.. --.+|.--|+++.++.|+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 5 55666789999999986432110 001 123677789999999999
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeE---EEEecCC-----CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc----
Q 001176 463 KQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---- 530 (1132)
Q Consensus 463 ~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h-----~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---- 530 (1132)
. .++++ .|=.|.+|+++--.. +..++.+ ..-|++..|+|... ..++-.+..|+|++.|++....
T Consensus 177 E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 177 E--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred c--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcch
Confidence 8 56665 488999999874322 2223332 24577888988755 6888888999999999984221
Q ss_pred --eEE----------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCC-----------
Q 001176 531 --RVD----------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR----------- 586 (1132)
Q Consensus 531 --~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~----------- 586 (1132)
... +..--..|..+.|+.+|+++++-. --+|.+||+. ..+++.+++.|..-
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 111 111123688999999999999863 4679999994 56677776655321
Q ss_pred c---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 587 S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 587 ~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
. -..++|+.++.++++|+....+++++...|.
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1 2347899999999999999999999965443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=126.53 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=142.0
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
++..|.........+.+...+.+.+|||||++++++...+ ..|++||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 3344433333333344677899999999999655444322 579999998875432 223
Q ss_pred CCcCeEEEEEcCCCCeEEEE-eCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCC--cEE
Q 001176 404 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--MIK 477 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg--~v~ 477 (1132)
+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+ .|+..+ .++ .|+
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIY 305 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCceEE
Confidence 45567789999999987654 4444 5888898876532 2334555556789999999 454443 333 688
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++|+.+++. ..+..+...+....|+|++ .+++.++.++ .|.+||+.++... .+.. .......+|+|||++|+
T Consensus 306 ~~d~~~~~~-~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 306 MMDADGGEV-RRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMIL 380 (417)
T ss_pred EEECCCCCE-EEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEE
Confidence 888877764 3444455566777887754 7787777765 7888998774433 2222 22334568999999998
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
...... +...+++.+.. ++....+.
T Consensus 381 ~~~~~~-~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 381 YATTRG-GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEeCC-CcEEEEEEECC-CceeeECC
Confidence 877532 33456666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=107.47 Aligned_cols=254 Identities=14% Similarity=0.101 Sum_probs=167.3
Q ss_pred CCCCeeEEEEcc---CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 342 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 342 h~~~V~~~~~sp---dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
.++.+..+.|.- +|...++-+-.+|.|.++.......... ++ ++.. ..-....-.++.|++-+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~--~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSS--KKISVVEALSLDISTSGT 134 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccch--hhhhheeeeEEEeeccCc
Confidence 456778888873 4543566667788999887654432211 00 0000 000111345788999999
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeEEEE-ecCCCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEAP 496 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~-~~~~~~~-~~~h~~~ 496 (1132)
.++++..+|.+.+-+.... .+....++++|.-+++...|+....+ ++++|+.|+.+..||++ .++.+.. .+-|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999985544332 23444468899999999999977766 89999999999999998 4445443 4568999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEecCCCCCCeEEEEeCCCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
|.+|.-+|. ...++++|+.|-.|++||.++..+...-..-.+.|..+.++|.- +.|++|-.++ ..+-+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999987765 44899999999999999999877766656667899999999854 3455554311 444544432
Q ss_pred --c---eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEE-EEECCCC
Q 001176 575 --A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 617 (1132)
Q Consensus 575 --~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 617 (1132)
+ .....+.|.. -.....|......+++++ .|+.++ +|-..++
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2 2233444443 333444543335677755 566644 6654443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-10 Score=119.81 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=154.9
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe------c------------CCCcEEEEEEcCCCcE
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s------~------------d~~~~~l~s~~~dg~v 476 (1132)
|-+.++|....||.+++|+...++....+.....-.+..++..|. | .+...+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999887544333222234445555552 1 1112378889999999
Q ss_pred EEEECCCCeEEEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 477 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
.++++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+................+.+++.+|||..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999999988886 499999999876543 7899999999999999998888888888888999999999999999
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC-----CCEEEEE-EcCCeEEEEECCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLAA-GDEFQIKFWDMDN 616 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 616 (1132)
+++ ++|.+||+++++.+..|.||.. +|++++|..+ |.+++++ ..+..+.+|-+..
T Consensus 161 ~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 885 4699999999999999999988 9999999877 6777764 4566677886554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=114.22 Aligned_cols=326 Identities=12% Similarity=0.121 Sum_probs=210.6
Q ss_pred ccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 728 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 728 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
..+|.|.++++-....|.+|--.+ -..++++. ...|.-+.|||+.++|++-+..-...-|+
T Consensus 217 ~wSP~GTYL~t~Hk~GI~lWGG~~---f~r~~RF~------Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~---------- 277 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHKQGIALWGGES---FDRIQRFY------HPGVQFIDFSPNEKYLVTYSPEPIIVEED---------- 277 (698)
T ss_pred EecCCceEEEEEeccceeeecCcc---HHHHHhcc------CCCceeeecCCccceEEEecCCccccCcc----------
Confidence 345566778888888888886553 22233332 24588899999999999987643332222
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCe-eEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEE
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESA-ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 886 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v-~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 886 (1132)
......+.+||+.+|.+.+...... . ...+ .-+.||.|++|+|-....+|.||+..+..++-.-.--...|....|
T Consensus 278 -d~e~~~l~IWDI~tG~lkrsF~~~~-~-~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 278 -DNEGQQLIIWDIATGLLKRSFPVIK-S-PYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred -cCCCceEEEEEccccchhcceeccC-C-CccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCccc
Confidence 0111235677888887766543310 1 2223 3468999999999888899999998876554333333567889999
Q ss_pred eCCCCCeEEEEeCC-----CcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEE----------cCCCcEEEEECC
Q 001176 887 HPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS----------GADAQLCMWSID 951 (1132)
Q Consensus 887 sp~~~~~lasg~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~----------~~D~~i~iwd~~ 951 (1132)
+| .+.+||.-+.. ..+.+-.+.+++.+++-.-|.-.=..|-|-.+|.+|+.- |.=..+.|+.+.
T Consensus 355 sP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 355 SP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred CC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 99 89999875433 357888888888887766665544567788888888742 122235566666
Q ss_pred CcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE--Ee--CCeEEEEeCC--CCceeecCCCCCCCCCeEEEEEccC
Q 001176 952 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VH--ESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCD 1025 (1132)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~--d~~v~vwd~~--~~~~~~~~~~~~h~~~i~~i~~s~d 1025 (1132)
..+.... ...+. ..+...+|-|.|..+++ ++ ..++.+|.+. ........... ....+.+.|||.
T Consensus 434 eKdIpve--~velk------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPk 503 (698)
T KOG2314|consen 434 EKDIPVE--VVELK------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPK 503 (698)
T ss_pred ccCCCce--eeecc------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCC
Confidence 5432111 11111 46788999999999888 33 3568899883 22222222222 456788999999
Q ss_pred CCEEEEE---ecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeC------CCcEEEEe
Q 001176 1026 GLLVYAG---FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS------DGAVHVVE 1096 (1132)
Q Consensus 1026 g~~las~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------Dg~i~vW~ 1096 (1132)
|++++.+ |..|.+.++|..-......-.+ .| -..+.+-|.| .|++++++++ |...++|+
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~----------eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASP----------EH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCc----------cc-cccccceECC-CCCEEEEeeehhhhccccceEEEE
Confidence 9998775 4578899999985332211111 22 3345789999 8899999875 45566777
Q ss_pred cC
Q 001176 1097 PS 1098 (1132)
Q Consensus 1097 ~~ 1098 (1132)
+.
T Consensus 572 fq 573 (698)
T KOG2314|consen 572 FQ 573 (698)
T ss_pred ee
Confidence 63
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=110.25 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=125.3
Q ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc---------HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHH
Q 001176 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1132)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1132)
..+.|+.|||+.||-..||.++|+.+.+|+|+..+ -.++|.+|..|+-++|+..+.++....-+. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 35689999999999999999999999999999872 457899999999999999999985443222 33489
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhc---ccCccchhhhcccCCchhHHHHHHHHHHhh
Q 001176 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT---LDNFRQNEQLSKYGDTKSARNIMLVELKKL 150 (1132)
Q Consensus 74 ~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 150 (1132)
|.+.+|+++||+..+..++|+.|++.++.|+...++..++.|...|. .+..+..+.... -....|.++...+.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l--~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAEL--LSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHH--HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998777777777776554 332222221110 1344577888777776
Q ss_pred cccCcccccccCCCCCcchHHHHHHHHHHHHH
Q 001176 151 IEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1132)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q 182 (1132)
|-...- . --..+|..||+.-+..|
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 632110 0 01447888886655555
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-08 Score=113.51 Aligned_cols=305 Identities=11% Similarity=0.044 Sum_probs=180.7
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
..+++++.+|.+..+|..+++...............+ .++..++.++. ++.++.+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 6788888999999999988887776655443222222 24566666653 6789999999999887665432 22
Q ss_pred EE-EEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC---cceEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 589 GV-VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 589 ~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.+ ... .+..++.++.++.++.||..+++.+........... ..+... .+..++.+..+|.+..+|..+|...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 21 112 245777788899999999999998877654322100 011111 1346778888899999999888432
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
...-........ ..-
T Consensus 214 W~~~~~~~~g~~-----------------------------------------------------------------~~~ 228 (377)
T TIGR03300 214 WEQRVALPKGRT-----------------------------------------------------------------ELE 228 (377)
T ss_pred eeeccccCCCCC-----------------------------------------------------------------chh
Confidence 211000000000 000
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 824 (1132)
++.+.. ....+ .+..+++++.+|.+..||....+ .+|....
T Consensus 229 ~~~~~~----------------------~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~-- 269 (377)
T TIGR03300 229 RLVDVD----------------------GDPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDA-- 269 (377)
T ss_pred hhhccC----------------------CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeecc--
Confidence 000000 00011 13346666677777777653221 1232210
Q ss_pred cccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCc
Q 001176 825 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSS 902 (1132)
Q Consensus 825 ~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~ 902 (1132)
.. ....+ .++..+++++ +|.+..+|..+++.+....... ....+... .+..|++++.+|.
T Consensus 270 ------------~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~ 331 (377)
T TIGR03300 270 ------------SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGY 331 (377)
T ss_pred ------------CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCE
Confidence 00 11111 2455666665 8999999999998876653222 22233333 2357888999999
Q ss_pred EEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 903 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 903 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
|+++|..+|+.+.+++.+...+..--...+ ..|+.++.||.|+.+
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 999999999999988876654433222224 357788899988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-08 Score=108.98 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=118.2
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
.++.++.++.|..+|..+|+.+..+.-.......... ++..++.++.++.+..+|..+++.+..............
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999988766543322222222 336788889999999999998888776554332211112
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce-----EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
. .+..++.+. .++.++.||.++|+.+..+..... .+ .+.... +..++.+..++.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 377899999999998877654322 11 111122 246777888899999999999877
Q ss_pred EEEeCCCCC--CC---cceEEEcC--CCCEEEEEeCCCcEEEEEcCCcc
Q 001176 621 TTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 621 ~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
......... .. ...+.-+| .+..+++++.+|.+..||..+++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 654321100 00 00111111 35578888889999999998883
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-08 Score=110.36 Aligned_cols=190 Identities=18% Similarity=0.283 Sum_probs=147.7
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc--------------------CC
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG--------------------PD 416 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--------------------pd 416 (1132)
.++|....||.++||+...++.... |. |.. .-++..++..|. -|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e--~~---------p~~-----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQE--FA---------PIA-----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeee--ec---------cch-----hccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 3688889999999999998875432 10 110 122233333332 23
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
-..++-|...|.|.+|++..++.-... .-..|.+.|.++.++.+-. .|.|++.|+.+..|+..+++.++.+++....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 446778888999999999998754432 3357999999999998887 8999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-----CCEEEEEecCCCCCCeEEEEeC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
+.+++++|+ +..+++++ +.|++||+++.+....+.+|.++|.+++|..+ |.++++... .+.-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999875 57888776 68999999999999999999999999999877 778776542 2344666655
Q ss_pred C
Q 001176 572 S 572 (1132)
Q Consensus 572 ~ 572 (1132)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-09 Score=105.71 Aligned_cols=214 Identities=15% Similarity=0.234 Sum_probs=140.2
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeEEEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~-~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~ 522 (1132)
.++||.+.|++...-|-.. -+++.+.|.+++||-- ..++.-..+. ....+++++.+.... ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5778999999888888777 5899999999999943 3344333332 134567777766544 78999999999988
Q ss_pred EEcC----CCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe-CCCCceeeeeccccCCceEEEEEeCCC
Q 001176 523 WLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 523 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
+.+. ..........|...+..+.|+-...++++++. |..+ .|. .+.+..+..+.-.. ...+..+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 8553 33444566778889999999999999999875 2223 333 23333332221110 0111111111
Q ss_pred CEEEEEEcCCeEEEEEC--CCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccc
Q 001176 598 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAM 673 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (1132)
+.+.|...|.|.+-.+ ..-.++.++.+| ...+.+++|.+...+|++|..|..+.+||+.-.......+.+|..
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 4444555566555443 345566666666 458999999999999999999999999998766444444444443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.7e-08 Score=120.24 Aligned_cols=257 Identities=14% Similarity=0.186 Sum_probs=162.7
Q ss_pred eEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeC--C------------CCCeEEEEEeCCCCCeEEEE-eCCCcE
Q 001176 841 ACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIG-MEDSSV 903 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~~~~~lasg-~~dg~v 903 (1132)
..+++++++..+++++ ++.|++||... +.+..+.+ . -.....+++++ +++.|.++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688988655454444 68899999864 44444332 1 12357899999 66655444 455789
Q ss_pred EEEEcccceeeeeeccc-----------------cCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccce---eee
Q 001176 904 QIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSR---FIQ 962 (1132)
Q Consensus 904 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~---~~~ 962 (1132)
+++|..++. +.++.+- -..-++++|+| ++..+++.+.++.|++||..++...... ...
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999987765 3333110 11246799999 5677788888899999999876432100 000
Q ss_pred CCCCCC---CCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCCceeecCC------------C--C-----CCCCCeE
Q 001176 963 APAGRQ---SPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSP------------K--D-----ALPAPIS 1018 (1132)
Q Consensus 963 ~~~~~~---~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~------------~--~-----~h~~~i~ 1018 (1132)
...+.. ........++++|+|+.|+++ .++.|++||+.......... + . .....-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 011110 011345789999999866663 57899999984322111100 0 0 0011245
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCc--cccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1019 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA--YIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1019 ~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
.++++++|.++++-+.++.|++||..++.......... +.-.....+.-..+..+++++ +|+++++.+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999988888899999999999876653322110 000001123345688999999 778999999999999999
Q ss_pred cCCCc
Q 001176 1097 PSDAE 1101 (1132)
Q Consensus 1097 ~~~~~ 1101 (1132)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 99876
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=130.38 Aligned_cols=201 Identities=14% Similarity=0.236 Sum_probs=162.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
++.+-..|.++.=+|...+.++|+.||.|++|....++.+.+..+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3445668889999999999999999999999999998887766543 33 7899999999999 678888899999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+. .++....+.|........|-. ..+++++ .++.+.+||..-... -.....|.+.++++++.|..+.|++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666777888998888888754 4566653 578899999654332 22347899999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
|. +|.|++||++..++.++++. +. ...++++|+..|.++||++.....+..++.
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 85 77899999998887776654 33 467899999999999999998877777653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-08 Score=96.61 Aligned_cols=249 Identities=13% Similarity=0.079 Sum_probs=159.1
Q ss_pred CCcCeEEEEEcC---CCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccC---CEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 404 AAISVNRCVWGP---DGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 404 h~~~V~~v~~sp---dg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
....+..+.|+. +|. .++-+-.+|.|.++.............+..-.- ...++.|++.+. -++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcE
Confidence 345677777764 555 566677889999998765443322222222111 245778899888 58888889999
Q ss_pred EEEECCCCeEEE--EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEE-ecCCCCeEEEEEEcC-CCC
Q 001176 477 KVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVD-YDAPGNWCTMMAYSA-DGT 551 (1132)
Q Consensus 477 ~vwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~-~~~~~~~v~~~~~s~-~~~ 551 (1132)
.+-+........ .++.|+.+.+...|+...+ +++.+|+.|+.+..||++..+. +.. ...|...|.++.-+| .+.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 976655555443 7899999999999986654 8999999999999999995443 222 455777899998886 567
Q ss_pred EEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeeE--EEEeCC-
Q 001176 552 RLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNML--TTVDAD- 626 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~- 626 (1132)
++++|+. |-.|++||.+ -++++..-. ..+.|..+..+|.-. .++.++.-+-.+|-+...+... ..+..+
T Consensus 225 ~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 225 YIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eEEEecc----ccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 8899887 5679999998 466654433 334788899988643 2333333344566665543222 111111
Q ss_pred CCCCCcceEEEcCCCCEEEEEeC-CCcEE-EEEcCCc
Q 001176 627 GGLPASPRLRFNKEGSLLAVTTS-DNGIK-ILANSDG 661 (1132)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~-iw~~~~~ 661 (1132)
.+.+-+..-.|......|++++. |..++ +|-..++
T Consensus 299 ~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 11112333334333356777654 55544 6655444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=116.48 Aligned_cols=283 Identities=16% Similarity=0.219 Sum_probs=193.6
Q ss_pred CCcceeeecCCCCCCceeccC-------CcccceEEeecCC--CCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCccc
Q 001176 310 GQSDEVSFAGVAHTPNVYSQD-------DLTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERL 379 (1132)
Q Consensus 310 ~~v~~~~~~~~g~~~~~~~~d-------~~~~~~~~~l~h~--~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~~ 379 (1132)
.++..++++|-|+.++.++.- +.|..+.+-|.|- -.|-.+.|||.-. .+-++........||++......
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~ 104 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN 104 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence 467788899999888876543 3577777777754 4688899998532 24455555677788988654322
Q ss_pred cccceeeeecccccccccccccCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE
Q 001176 380 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF 458 (1132)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~ 458 (1132)
. ..-++.||+..|+.+.|.|. ...+|+++.|..+..||+.+..... .....-......|+|
T Consensus 105 a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 105 A----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKW 166 (1081)
T ss_pred c----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--eeeecccccCceeee
Confidence 1 11237899999999999995 5689999999999999999865322 223333446678999
Q ss_pred ecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC
Q 001176 459 AHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA 536 (1132)
Q Consensus 459 s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~ 536 (1132)
+.... .+...+..+.|.+||.+.| .++..+++|...|+++.|..... ..+.+.+.||+|++||.+....... ...
T Consensus 167 nyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 167 NYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred cccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceecc
Confidence 87666 4555667889999999875 46788999999999998865433 5688999999999999876554432 222
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE---------EeCCC-CceeeeeccccCCceEEEEEeCC----------
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTT---------- 596 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~~---------- 596 (1132)
...+|..-.+.|-|+-...--. .|+..+.+ |+..+ .+++.+|.||.+ .|....|-..
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred ccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcc
Confidence 3446666677775543332211 11223333 33332 457889999987 4443333221
Q ss_pred CCEEEEEEcCCeEEEEECCC
Q 001176 597 RNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~ 616 (1132)
.-.|++-+.|..+++|-+.+
T Consensus 321 dfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCceEeeeccH
Confidence 23689999999999998764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=112.99 Aligned_cols=246 Identities=14% Similarity=0.185 Sum_probs=172.4
Q ss_pred ccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC-c---eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 398 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-E---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 398 ~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~-~---~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
...+.||...|..++--.+.+-+++++.|.+|++|.++... . ..+..++..|+.+|.++.|..+-+ .++++ |
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--D 803 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--c
Confidence 34478999999999888888889999999999999987532 1 225557889999999999999987 66655 8
Q ss_pred CcEEEEECCCCeEEEEecC--CCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCceEEe-----cCCCCeEEEEE
Q 001176 474 KMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMA 545 (1132)
Q Consensus 474 g~v~vwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~ 545 (1132)
|-|.+||.--|+++..+.. ..+.+..+...++-+..+++.+ +...+|+++|.+..+....+ .+....+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8999999888887654321 2233333333344444566555 78999999999887755433 33445789999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCeeEEEEe
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVD 624 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~ 624 (1132)
..+.|++++++-. .|.|.+.|.++|+.+..+..-.- ....++ .|..+.++....|..+.+ |...++......+
T Consensus 884 Va~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 884 VADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999999998864 77899999999998877654322 222222 344566676667888888 9887776655544
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.+.. +.. -.-.-|.-|+++.....+.+|.
T Consensus 958 pppe--pah--flqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 958 PPPE--PAH--FLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCCc--chh--hhhccCceeEEeccCcEEEEEe
Confidence 3221 100 0112366677777777778875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=7e-07 Score=112.25 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee-------------ccccCCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-------------KGHQNRITGLAFSPTLNALVSSGADAQLCM 947 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-------------~~h~~~V~~l~~spdg~~l~s~~~D~~i~i 947 (1132)
...++|++ +|+++++-+.++.|++||..++...... .++-....+|+++++|+.+++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 46899999 8888888889999999999877654322 112235778999999999999999999999
Q ss_pred EECCCccc
Q 001176 948 WSIDKWEK 955 (1132)
Q Consensus 948 wd~~~~~~ 955 (1132)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=125.78 Aligned_cols=145 Identities=15% Similarity=0.316 Sum_probs=112.7
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
.+++.+.|+.+|....++..||.+.+|.... ++ .+....| ......+.|-.
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-----------------------k~---~~s~qch-nk~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-----------------------KP---YTSWQCH-NKALSDFRFIG-- 2302 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCC-----------------------cc---eeccccC-Cccccceeeee--
Confidence 6788889999999999999999999996531 00 1222236 77777777765
Q ss_pred CEEEEee----CCeEEEEECCC---CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC
Q 001176 850 SYVMSAS----GGKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922 (1132)
Q Consensus 850 ~~la~~s----dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 922 (1132)
..+++++ ++.+.+||.-- ..++. ..|.+.++++++.| ..++|++|+.+|.|++||+...++++.++.
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---
Confidence 6677664 47799999643 12333 77999999999999 899999999999999999998888777764
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccc
Q 001176 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 956 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 956 (1132)
+. ...++++++..|.++||++.+...+
T Consensus 2377 ------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2377 ------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ------hh-hhheeeccCcccceEEEEccccchh
Confidence 33 4578999999999999999986543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-07 Score=103.92 Aligned_cols=197 Identities=12% Similarity=0.023 Sum_probs=122.8
Q ss_pred CCeeEEEEccCCCeEEE-EEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 344 SNVMSMDFHPQQQTILL-VGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla-~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
..+....|||||+++++ +... +..|.++|+.+++... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 37889999999986344 3332 3578899998876543 22245556678899999977
Q ss_pred EEE-eC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCC
Q 001176 421 GVA-FS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 421 as~-~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
+.. +. +..|.++|+.++.. .. +..+........|+|||+.+++. ....+ .|.+.|+.+++..+.... ..
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F~-Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIVFV-SDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEEEE-ECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 654 32 34688888877653 22 33333334456899999963333 33333 688889888776433221 11
Q ss_pred CeEEEEeeccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 496 PVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
. ...|+|++ ..|+..+.. ..|.+.|+.++... .+... .......|+|||+.++..... .+...+
T Consensus 322 ~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L 394 (419)
T PRK04043 322 N--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSAL 394 (419)
T ss_pred c--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEE
Confidence 1 23677654 666555543 36777888766543 33322 233468899999998877643 234457
Q ss_pred EEEeCCC
Q 001176 567 VEWNESE 573 (1132)
Q Consensus 567 ~~wd~~~ 573 (1132)
.+.++..
T Consensus 395 ~~~~l~g 401 (419)
T PRK04043 395 GIIRLNY 401 (419)
T ss_pred EEEecCC
Confidence 7777754
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-07 Score=88.46 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=119.0
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC-------CCCCeEEEEEeCCC-----CCeEEEEeCCCcE
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQD-----NNIIAIGMEDSSV 903 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~sp~~-----~~~lasg~~dg~v 903 (1132)
...-+.++||||+.+||.+. .|+|++||+....+ ..+.. -...|..+.|.+-. ...|.+-..+|.+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34567899999999999997 89999999986443 33322 12456777776521 2245667788888
Q ss_pred EEEEcccc-----eeeeeec---cccCCeeEEEEcCCCCEEEEEcCCCc-----------EEEEECCCcccccceeeeCC
Q 001176 904 QIYNVRVD-----EVKTKLK---GHQNRITGLAFSPTLNALVSSGADAQ-----------LCMWSIDKWEKLKSRFIQAP 964 (1132)
Q Consensus 904 ~iwd~~~~-----~~~~~l~---~h~~~V~~l~~spdg~~l~s~~~D~~-----------i~iwd~~~~~~~~~~~~~~~ 964 (1132)
+=|-+..+ +....+. .+...|.++.++|..++|+.||.... +..|.+-++
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~----------- 190 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD----------- 190 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC-----------
Confidence 88876432 2333332 24668999999999888887764321 233333221
Q ss_pred CCCCCCCCCceeEEECCCCcEEEEEeCC------eEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001176 965 AGRQSPLVGETKVQFHNDQTHLLVVHES------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1037 (1132)
Q Consensus 965 ~~~~~~~~~v~~~~~s~dg~~l~~~~d~------~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~ 1037 (1132)
+|..+.+....++ +-.+|.+ +.+... .. ......|..|..||||++||+...+|.
T Consensus 191 ---------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~--~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 191 ---------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQ--GQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred ---------------CCcEEEccccCccccccccccceeeccceeeee-cc--ccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 1222221111111 1123333 111111 11 112678999999999999999999999
Q ss_pred EEEEeCCCcceecccCCC
Q 001176 1038 IGVFDAETLRFRCRIGPS 1055 (1132)
Q Consensus 1038 i~vwd~~~~~~~~~~~~~ 1055 (1132)
|.+|++.+.+++..+..+
T Consensus 253 lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 253 LSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEEecCcchhhcccchh
Confidence 999999999988777543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-07 Score=88.25 Aligned_cols=148 Identities=9% Similarity=-0.035 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+.++++|+|++++++.+....|..|.++..............++.=.+..|+.... .+|++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999987654332223334455567889998887 7999999999999999865433
Q ss_pred E-----EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--------CeEEEEEEcCCCCEEE
Q 001176 488 Y-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLF 554 (1132)
Q Consensus 488 ~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~ 554 (1132)
. +-..|.+.+..+.|++.+.-++|+..-.-+.+.+.|+++......+.... ..|..-.|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22358899999999987766788888888899999999877655433222 2356666666665555
Q ss_pred EEe
Q 001176 555 SCG 557 (1132)
Q Consensus 555 ~~~ 557 (1132)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.6e-08 Score=105.95 Aligned_cols=300 Identities=10% Similarity=0.146 Sum_probs=192.0
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC--CcCeE
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVN 409 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~ 409 (1132)
.+...-..++-.+++.++..+|.|+- +|.++.-| +.+-|+...-.... .-.| .-.|.
T Consensus 13 ~tf~kslsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~va 71 (1081)
T KOG0309|consen 13 PTFGKSLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVA 71 (1081)
T ss_pred CccCceeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhc
Confidence 33333445556678999999999986 66665433 45556554321110 0112 22467
Q ss_pred EEEEcCCCC--eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-E
Q 001176 410 RCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-K 486 (1132)
Q Consensus 410 ~v~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-~ 486 (1132)
.+.|||... +-++......-.+|++.....-.....+.+|...|+.+-|.|.... .+++++.|-.+..||+++.. +
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcc
Confidence 788888543 3444445556778998765544444568899999999999998877 89999999999999998754 4
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCeEEEEEEcCC-CCEEEEEecCCCCCC
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGES 564 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~ 564 (1132)
+..+..-...-..++|+... ..+.+.+..+.|++||.+.+... ..++++...|+.+.|..- ...+.+++ .|+
T Consensus 151 ~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~ 224 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDG 224 (1081)
T ss_pred eeeeecccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCC
Confidence 56665555667788887654 34556677788999999987654 467777778888888653 23445554 488
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE--EEcCCeEEEE---------ECCC-CeeEEEEeCCCCCCCc
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFW---------DMDN-MNMLTTVDADGGLPAS 632 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~~~v 632 (1132)
+|..||................++..-.+.|-|.-.+. --.+..+.++ +..+ .+++..+.+|.. .|
T Consensus 225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V 302 (1081)
T KOG0309|consen 225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VV 302 (1081)
T ss_pred ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HH
Confidence 99999987543222222222225555566665533322 1112234443 3332 456777877754 45
Q ss_pred ceEEEcCCC----------CEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEG----------SLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~ 661 (1132)
...-|-..+ -.|++-+.|.++++|-+.+.
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 544443322 26899999999999988653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-06 Score=93.33 Aligned_cols=188 Identities=13% Similarity=0.072 Sum_probs=115.1
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCC-Ce-E-----EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV-Y-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 538 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v-~-----~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 538 (1132)
.++.++.++.+.-+|..+|+.+.+..-... .. . .+.-.|.-.+..++.++.+|.+..+|.++++.+.......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 577778889999999999998766542210 00 0 0000111123567788899999999999998887766543
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce-----EEEEEeCCCCEEEEEEcCCeEEEEE
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1132)
....+.... + ..++.+. .++.++.+|.++|+.+..+..... .+ .+... .+..++.++.+|.+..+|
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 322222221 3 3455443 367899999999998887764321 10 11111 134577778899999999
Q ss_pred CCCCeeEEEEeCCCCC--CC---cceEEEcC--CCCEEEEEeCCCcEEEEEcCCcc
Q 001176 614 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 614 ~~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
..+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..+|+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 9999877654321110 00 11111223 35567778888999999998884
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-08 Score=100.36 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=113.5
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE-
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 423 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~- 423 (1132)
.++.+..+|.++ ++|++..+....++++..... ..+.++.. .-...-+++.|-.+...+..+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 456667777887 788887777777777665443 11122110 011122344444444444444
Q ss_pred --eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cCCCCCeEEE
Q 001176 424 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 500 (1132)
Q Consensus 424 --~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~i 500 (1132)
+....+.+|....+.+. .+-||-..+++|+|+||++ +|+|+.+|..|+|-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44555666666654333 3568999999999999998 8999999999999877665555554 4799999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 535 (1132)
+..++ ..|+++|.|+++++||+.+++.+..+.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 98654 579999999999999999988775443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-06 Score=94.95 Aligned_cols=309 Identities=11% Similarity=0.049 Sum_probs=168.5
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEE-----EEEEc--CCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCT-----MMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~-----~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
..+++++.+|.+.-+|..+++.+........ ... .+.-. -++..++.++ .++.++.+|.++|+.+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~----~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS----EKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc----CCCEEEEEECCCCCCccc
Confidence 4667777777888888877776665443321 000 00001 1344555554 367899999999998877
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC--CCCEEEEEeCCCcEEEEE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~ 657 (1132)
...... ...+.... +..++.+..++.++.+|..+|+.+.............. .-+| .+..++.++.+|.+..+|
T Consensus 146 ~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEEEE
Confidence 764332 11111222 45677788899999999999999887764321000000 0112 234577788899999999
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
..+|+...+ ..... |.+
T Consensus 222 ~~~G~~~W~-~~~~~----------------------------------~~~---------------------------- 238 (394)
T PRK11138 222 MEQGQLIWQ-QRISQ----------------------------------PTG---------------------------- 238 (394)
T ss_pred ccCChhhhe-ecccc----------------------------------CCC----------------------------
Confidence 988833221 11000 000
Q ss_pred ccccCce-eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccc
Q 001176 738 AEDVDKI-KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 816 (1132)
Q Consensus 738 ~~~~~~v-~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 816 (1132)
...+ +++++. ... .+ .+..+++++.+|.+..+|..
T Consensus 239 ---~~~~~~~~~~~------------------~sP----~v--~~~~vy~~~~~g~l~ald~~----------------- 274 (394)
T PRK11138 239 ---ATEIDRLVDVD------------------TTP----VV--VGGVVYALAYNGNLVALDLR----------------- 274 (394)
T ss_pred ---ccchhcccccC------------------CCc----EE--ECCEEEEEEcCCeEEEEECC-----------------
Confidence 0000 000000 000 01 12335555556666665543
Q ss_pred cccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeE
Q 001176 817 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII 894 (1132)
Q Consensus 817 l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~l 894 (1132)
+|+++.....+ . ...+. .++..+..++ +|.+..+|..+++.+....... ....+..+. +..|
T Consensus 275 -----tG~~~W~~~~~----~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l 338 (394)
T PRK11138 275 -----SGQIVWKREYG----S--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYL 338 (394)
T ss_pred -----CCCEEEeecCC----C--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEE
Confidence 22222111000 0 11112 2344555555 8999999999998765443211 122333332 2467
Q ss_pred EEEeCCCcEEEEEcccceeeeeeccccCCeeE-EEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 895 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 895 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
+.++.||.|+..|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 339 ~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 78899999999999999988877544333332 222 2457888899998887654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-06 Score=97.18 Aligned_cols=222 Identities=14% Similarity=0.176 Sum_probs=131.1
Q ss_pred EEEEcCCCCeEEEEeC----CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 410 RCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 410 ~v~~spdg~~las~~~----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
-.+|+|...++|+++. .|.|.||- ++|+.-+ ..+..- .+++++|+|..- .|+.|-.-|.+.+|...+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-ccccce---ehhhhccChHHH--HHhhccccceeEEEecCCce
Confidence 3568888888888764 57788875 3444221 112222 356799999876 88999889999999987777
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C--CC--eEEEEEEcCCCCE---EEEE
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTR---LFSC 556 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~---l~~~ 556 (1132)
.-.....|..+|..+.|++++ ..++++..-|.+.+|..+-.+....... | +. ...|...++++.- ++-+
T Consensus 93 ~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhh
Confidence 666666799999999998755 8999999999999998875444332111 1 11 2334445666432 1111
Q ss_pred ecCCCCCC--eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001176 557 GTSKEGES--HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 634 (1132)
Q Consensus 557 ~~~~~~~~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1132)
.-.+|... ...-|..++.. +... -.-.|+|..++.++.+|+|+--|-. |+.....+... -..
T Consensus 171 aVtgDe~alD~~fnwk~~~a~--rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS----~vQ 234 (1416)
T KOG3617|consen 171 AVTGDESALDEPFNWKESLAE--RSDE---------KSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDS----EVQ 234 (1416)
T ss_pred hccCchhhhcccccCccchhh--cccc---------ccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccc----hHH
Confidence 11112111 12222211111 0000 1125778888889999999888743 44544444332 134
Q ss_pred EEEcCCCCEEEEEeCCCcEEEE
Q 001176 635 LRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
+-|.+...-+++...+-++.++
T Consensus 235 mLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 235 MLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred HHHhcccceEEEEeeeceeeEE
Confidence 5555544444444444444443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.0012 Score=76.97 Aligned_cols=285 Identities=11% Similarity=0.098 Sum_probs=146.8
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCccccc--CCCCCCCCCCeeEEEEeeC-
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND--INESKPTEESAACIALSKN- 848 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~h~~~~v~~~~~s~d- 848 (1132)
|.-..+-.|..+|.++..||.+.-|.++. .+|..-... .-| ..++.--.|+..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~lG----t~P~~Lr~f~sk~ 641 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVTLG----TQPISLRTFSSKS 641 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccccC----CCCcEEEEEeeCC
Confidence 44445555678899999999998876643 232221111 112 334444445443
Q ss_pred CCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEE-EEEeC-CCCCeEEEEeCCCcEEEEEcccce--eeeeeccccCCe
Q 001176 849 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHP-QDNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQNRI 924 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~sp-~~~~~lasg~~dg~v~iwd~~~~~--~~~~l~~h~~~V 924 (1132)
+..+.+++|.-..+|... +++..+-- .-..+.. ..|+. ..+..|+++.. +.+++.-++.-+ .++++.-+ ...
T Consensus 642 ~t~vfa~sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~-~~p 717 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLG-ESP 717 (1096)
T ss_pred ceEEEEeCCCCEEEEecC-CcEEEecc-chHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCC-CCh
Confidence 334555555555555433 22222110 0111111 12222 12345555433 456666554322 12223222 334
Q ss_pred eEEEEcCCCCEEEEEcC-----------C---CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-CcEEEEE
Q 001176 925 TGLAFSPTLNALVSSGA-----------D---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLVV 989 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~-----------D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~ 989 (1132)
..+++.+....+++.+. . ..++++|-.+.+..........+.. ..+..+.|..| +.++++|
T Consensus 718 rrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~----~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 718 RRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETA----LSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred hheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccccee----eeeeeeeecCCCceEEEEE
Confidence 55666654444433321 1 2367777777664443333322221 34556678888 7788875
Q ss_pred e-----------CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcc
Q 001176 990 H-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1057 (1132)
Q Consensus 990 ~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~ 1057 (1132)
. .|.|.+|.. ..+.+...... --.+.+.++.. -+|++||.- ...|++|+..+.+.++.-.
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~---- 865 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIEC---- 865 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhh----
Confidence 2 377888888 43444333211 11344444432 367777754 4689999999885553321
Q ss_pred ccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccc
Q 001176 1058 IPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1058 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~ 1104 (1132)
.+...++.+...- .++.|++|..=+++.+-.....|..+
T Consensus 866 -------~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f 904 (1096)
T KOG1897|consen 866 -------NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNF 904 (1096)
T ss_pred -------cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCce
Confidence 3334444554444 67899999888888887776666444
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-06 Score=83.16 Aligned_cols=233 Identities=15% Similarity=0.178 Sum_probs=138.0
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCC--eEEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~--~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 917 (1132)
++.+.||+.||+.-|..|.|=...+. ..+..... ....=..++||| |+.+||.+...|+|++||+...++ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67789999999999988888766542 22233222 334467899999 999999999999999999975443 333
Q ss_pred cc-------ccCCeeEEEEcCCC------CEEEEEcCCCcEEEEECCCcc--ccc-ceeeeCCCCCCCCCCCceeEEECC
Q 001176 918 KG-------HQNRITGLAFSPTL------NALVSSGADAQLCMWSIDKWE--KLK-SRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 918 ~~-------h~~~V~~l~~spdg------~~l~s~~~D~~i~iwd~~~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
.. -...|.+|.|-+-. ..|+...-+|.++-|-+..+. .-. .........+. .+|.++.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 22 12456777774321 245566677777777664321 111 11111111111 6789999999
Q ss_pred CCcEEEEEe--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEE---ccCCCEEEEEecCCc------EEEEeCCCcceec
Q 001176 982 DQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIY---SCDGLLVYAGFCDGA------IGVFDAETLRFRC 1050 (1132)
Q Consensus 982 dg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~---s~dg~~las~~~dg~------i~vwd~~~~~~~~ 1050 (1132)
..++|++++ ...-..+... ...+++=.. +|..+. ++...|+. -.+|.+-+.+...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~-------------~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKAS-------------SCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CCCEEEEeccCCCCCcccccc-------------ccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee
Confidence 999888842 1110001110 112222222 122222 22222222 2344444433322
Q ss_pred ccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc--ccccC
Q 001176 1051 RIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE--LKWGG 1106 (1132)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~--~~~~~ 1106 (1132)
+.. .....+..+.-|| |+..||+...+|+|.+|++..-. +.|..
T Consensus 224 ~~~-----------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 224 RQG-----------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccc-----------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 211 2346788999999 99999999999999999998754 55655
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.9e-06 Score=92.93 Aligned_cols=197 Identities=11% Similarity=0.082 Sum_probs=125.7
Q ss_pred CEEEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEcCC
Q 001176 452 GVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDY 527 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~~wd~~~ 527 (1132)
.+....|+|||+.+.+++.. .+..|.++|+.+|+..... ...+......|+|++. .++++.+.+ ..|.++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS-KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC-EEEEEEccCCCcEEEEEECCC
Confidence 77889999999852232222 2467999999888764433 3455566677877553 344444444 4577778766
Q ss_pred CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-
Q 001176 528 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE- 606 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 606 (1132)
+.. ..+...........|+|||+.|+..+. +.+...|+++|+.+++..+...... . ...|+|+|++++..+..
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~~g~---~-~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVFHGK---N-NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCccCCC---c-CceECCCCCEEEEEEcCC
Confidence 553 333333333445689999999888763 3345679999998887644332211 1 24899999998876533
Q ss_pred --------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC---cEEEEEcCC
Q 001176 607 --------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSD 660 (1132)
Q Consensus 607 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~ 660 (1132)
..|++.|+.++... .+.... ......|+|||+.++..+.++ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~-~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIR-RLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeE-ECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 36888898887653 333221 234689999999888776532 344555543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-06 Score=82.37 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=148.3
Q ss_pred CCEEEEee-CCeEEEEECCCCeE-EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC--Ce
Q 001176 849 DSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN--RI 924 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~--~V 924 (1132)
-.+||.|+ .|...+|...+.+. +.....|...|+-+.=--+...-+..++.|.++++.++..+.....+ |.. .+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccce
Confidence 34777776 79999999986543 33344454443322111112234556788888999888755432222 333 37
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCC
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE 1002 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~ 1002 (1132)
.++++++|++++++.+....|..|.++............... +.-.+..|+.....+|+ ..||.+.+||+ ...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 889999999999999999999999997644322221111111 34468899998888888 58999999999 222
Q ss_pred c-eee-cCCCCCCCCCeEEEEEccCCC--EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCC-cEEEEeCC
Q 001176 1003 C-SRS-WSPKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH-PLVIAPHP 1077 (1132)
Q Consensus 1003 ~-~~~-~~~~~~h~~~i~~i~~s~dg~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p 1077 (1132)
. .+. -.....|.+.+..+.|++-|. +|+..-.-+.+.|-|++++.....+.... .....|... +..-.|..
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~----d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD----DVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc----cccccccccccccccccC
Confidence 1 111 112234799999999998665 34444446789999999998877665332 112233322 55666665
Q ss_pred CCCCeEEEEeCCCcEEEEecCC
Q 001176 1078 SEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1078 ~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
++.-+.+.+.+ .+.-|++..
T Consensus 313 -~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 313 -ENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred -CCcccccccch-hhheeeccc
Confidence 44444444333 334566654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-07 Score=89.19 Aligned_cols=209 Identities=13% Similarity=0.229 Sum_probs=127.9
Q ss_pred eeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC
Q 001176 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 425 (1132)
Q Consensus 346 V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 425 (1132)
|+.+.|+-+- .|+++..++.+.......+.+.. .|+-.....++. .+..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCcee--eeeccCCCCCcccccccCCceEecCC
Confidence 7777777764 58888888887777666554432 122211111111 12235544444455556788999999
Q ss_pred CCeEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEc-----CCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~-----~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
||.+.+.+.+.-..+. ..+.. |.+ --+.++...+. .+.++. .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622211 11111 221 12223333444 333322 2234556665543322111112234999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
++-+|... +.+++|+.||.+-+||++....+. .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888765 789999999999999999875443 5677888999999998 5678888874 78899999764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-05 Score=83.22 Aligned_cols=219 Identities=18% Similarity=0.182 Sum_probs=142.8
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe-cCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 410 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 410 ~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s-~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
++.|.+ ++.++++.-..+.|..|+..++.... +.. . ....+++. +++. ++.+... .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~-~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDL-P-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EES-S-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Eec-C-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 577888 77777777778999999998864322 211 1 26777887 6654 4555544 4556699998654
Q ss_pred EEecC-----CCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 488 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 488 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
..... .....+.+++.++ |.+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 33322 3456778888764 4666666543 456666665 33333333345678999999999887
Q ss_pred EEecCCCCCCeEEEEeCCCCce----eeeeccccC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAI----KRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
.+.. ..+.|..+++..... .+.+..... +....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 467799998863221 122211111 136779999999988887789999999988 888888887633
Q ss_pred CCCcceEEEc-CCCCEEEEEe
Q 001176 629 LPASPRLRFN-KEGSLLAVTT 648 (1132)
Q Consensus 629 ~~~v~~~~~s-~~~~~l~~~~ 648 (1132)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68999994 6766666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.2e-07 Score=89.37 Aligned_cols=252 Identities=17% Similarity=0.204 Sum_probs=155.6
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC--ceeeeeeeeccc------------CCEEEEEEecCCCcEEEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 469 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~v~~v~~s~d~~~~~l~s 469 (1132)
...-|+++.|...|.||++|...|+|.+|.-+... ..+...++++|. ..|..+.|..++.+-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45579999999999999999999999999866532 122233455664 3678888887765546667
Q ss_pred EcCCCcEEEEECCCCeEEEE--------ec-CCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCC
Q 001176 470 CGDDKMIKVWDVVAGRKQYT--------FE-GHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGN 539 (1132)
Q Consensus 470 ~~~dg~v~vwd~~~~~~~~~--------~~-~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~ 539 (1132)
.+.|++|++|.+........ +. ...+++++..- -.+--.+. |..|... .++..-..|.-
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~------l~lprls~hd~iiaa~-----p~rvyaNaH~y 173 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE------LLLPRLSEHDEIIAAK-----PCRVYANAHPY 173 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH------hhcccccccceEEEec-----cceecccccee
Confidence 77899999999876532111 00 01223322210 00000000 1111111 11222245677
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccC----CceEEEEEeCCC-CEEEEEEcCCeEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK----RSLGVVQFDTTR-NRFLAAGDEFQIKF 611 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~----~~v~~~~~~~~~-~~l~~~~~dg~i~i 611 (1132)
.+.++.++.|...++++- +-+|.+|++.--.. +..++.|.- ..|++..|+|.. ..+.-.+..|.|++
T Consensus 174 hiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 174 HINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred EeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 899999999999999873 67799999864221 122222221 157788899976 44555678999999
Q ss_pred EECCCCee------EEEEeCC--------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccc
Q 001176 612 WDMDNMNM------LTTVDAD--------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 672 (1132)
Q Consensus 612 wd~~~~~~------~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (1132)
-|++...+ +...... .-...|..+.|+++|+++++-+- -+|++||++..+.++.++..|.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 99984221 1111110 11246788999999999886544 5999999988777666665443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=82.86 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=143.5
Q ss_pred CeeEEEEee-CCCEEEEee-CC-eEEEEECCCCeEEEEeeCCCCCe--EEEEEeCCCCCeEEEEeC-----CCcEEEEEc
Q 001176 839 SAACIALSK-NDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNV 908 (1132)
Q Consensus 839 ~v~~~~~s~-dg~~la~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~sp~~~~~lasg~~-----dg~v~iwd~ 908 (1132)
....++.+| ++..++.+- -| ...+||..+++....+....+.- -.-+||+ ||++|.+.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345788889 555666666 45 48999999999988877655543 2578999 8888887643 478999999
Q ss_pred c-cceeeeeeccccCCeeEEEEcCCCCEEEEEcC------------------CCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 909 R-VDEVKTKLKGHQNRITGLAFSPTLNALVSSGA------------------DAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 909 ~-~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
. +.+.+..+..|.-.--.+.+.|||+.|+.+-. +..+..-|..+++.+.+..+.... |.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~-~~- 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL-HQ- 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-cc-
Confidence 9 66788888888777778899999987776521 234666667777755443332111 11
Q ss_pred CCCCceeEEECCCCcEEEEEe-CC-------eEEEEeCCCCceeecCCC----CCCCCCeEEEEEccCCCEEEEE-ecCC
Q 001176 970 PLVGETKVQFHNDQTHLLVVH-ES-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYAG-FCDG 1036 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~~~-d~-------~v~vwd~~~~~~~~~~~~----~~h~~~i~~i~~s~dg~~las~-~~dg 1036 (1132)
..+..+++.++|..++... .+ -+.+++.... +..+... ......|-+|+++++|.++++. =.-|
T Consensus 163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 4688999999998777642 11 1444444221 2222111 1225789999999999877554 4677
Q ss_pred cEEEEeCCCcceecccC
Q 001176 1037 AIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 1037 ~i~vwd~~~~~~~~~~~ 1053 (1132)
.+.+||..+|+.+....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 89999999999987664
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-07 Score=95.05 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE----eCCeEEEEeC
Q 001176 924 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV----HESQISVYDS 999 (1132)
Q Consensus 924 V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~d~~v~vwd~ 999 (1132)
...+..+++++++|.+..+....++++..... ...++...... ...+++.|-.+...+.++ +...+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677888888888777777777765443 12222222221 122455555555444442 3345555555
Q ss_pred CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCC
Q 001176 1000 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE 1079 (1132)
Q Consensus 1000 ~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 1079 (1132)
...+ ....-+|-+.++.+++|||+++++++..|..|+|-.+..--.+..+ .-||...|..++..+
T Consensus 140 ~~~~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----------clGH~eFVS~isl~~-- 204 (390)
T KOG3914|consen 140 DSGR---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----------CLGHKEFVSTISLTD-- 204 (390)
T ss_pred cccC---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----------ccccHhheeeeeecc--
Confidence 3222 2223567899999999999999999999999999888764444333 248888999888875
Q ss_pred CCeEEEEeCCCcEEEEecCCCcc
Q 001176 1080 PNQIALGMSDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1080 ~~~l~s~~~Dg~i~vW~~~~~~~ 1102 (1132)
++.|++||.|++|++||+.+|..
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred CceeeecCCCCcEEEEecccCCc
Confidence 56799999999999999999983
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=99.26 Aligned_cols=272 Identities=17% Similarity=0.199 Sum_probs=173.5
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 809 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 809 (1132)
.....++.++.|++|++|.+............++.-..|...|.++.|-.+-++++++ ||.+.+||-
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP----------- 811 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP----------- 811 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc-----------
Confidence 3345667778899999999987555444333334445589999999999998877654 677888863
Q ss_pred ccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee--CCCEEEEe-e-CCeEEEEECCCCeEEEEee-----CCCCC
Q 001176 810 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK--NDSYVMSA-S-GGKVSLFNMMTFKVMTMFM-----SPPPA 880 (1132)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~--dg~~la~~-s-dg~i~vwd~~~~~~~~~~~-----~~~~~ 880 (1132)
--|.++........ .+.+..+..-+ |...+..| + ..+|+++|...++-...++ ++..-
T Consensus 812 -----------Figr~Laq~~dapk--~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 812 -----------FIGRLLAQMEDAPK--EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred -----------cccchhHhhhcCcc--cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 23333222111111 22222232223 44455555 4 6899999999877655554 44566
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEE-EECCCcccccce
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM-WSIDKWEKLKSR 959 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~i-wd~~~~~~~~~~ 959 (1132)
+.++++.+ .|+.+|.|-.+|.|.+.|..+|+.+..++.-......++ .|..+.|+....|.++.+ |..-.+..
T Consensus 879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim---- 952 (1034)
T KOG4190|consen 879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM---- 952 (1034)
T ss_pred eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee----
Confidence 89999999 899999999999999999999999988877666666665 467788888888999988 97765432
Q ss_pred eeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCC-----CceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 960 FIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL-----ECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 960 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~-----~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
.++..... .+.. -...-|.-|++. ....+.||--.. ..+..+++ +...+..++++--|=..-+..|+
T Consensus 953 h~q~kppp----epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~-d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen 953 HLQDKPPP----EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP-DEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred eeccCCCC----cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccc-cccCCccceeeeccccchhhccC
Confidence 11111100 0100 012234445554 444566775411 11112222 22366788888888777677788
Q ss_pred cCCcEEE
Q 001176 1034 CDGAIGV 1040 (1132)
Q Consensus 1034 ~dg~i~v 1040 (1132)
+.|.|.+
T Consensus 1026 e~G~IaL 1032 (1034)
T KOG4190|consen 1026 EHGAIAL 1032 (1034)
T ss_pred CCCceee
Confidence 8888875
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.8e-05 Score=73.69 Aligned_cols=143 Identities=8% Similarity=0.041 Sum_probs=92.8
Q ss_pred EccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEE
Q 001176 351 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH 430 (1132)
Q Consensus 351 ~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~ 430 (1132)
.-+|.+.+++.|+..+.+.--|..+|+..- +. --+..|-+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~W-------e~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIW-------EA-------------ILGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEe-------eh-------------hhCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 344556789999999999999999887642 21 012233332222 578899999999999
Q ss_pred EEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccE
Q 001176 431 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF 510 (1132)
Q Consensus 431 iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 510 (1132)
+.+.++|+.......+..- .+ .....+++. ++..|+.|++.+.-|..+..++...+-....-.+-++.+. + ..
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999999776544333221 11 223456777 8999999999999999999998886643333333334332 2 23
Q ss_pred EEEEecCCeEE
Q 001176 511 IFSTAIDGKIK 521 (1132)
Q Consensus 511 l~s~s~dg~i~ 521 (1132)
|..+...|.+.
T Consensus 150 ly~a~t~G~vl 160 (354)
T KOG4649|consen 150 LYAAITAGAVL 160 (354)
T ss_pred EEEEeccceEE
Confidence 44444444443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-08 Score=111.94 Aligned_cols=216 Identities=14% Similarity=0.212 Sum_probs=157.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEE-cCCC-cEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDK-MIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~dg-~v~v 478 (1132)
+..|...-+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||. ..++. +... -..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs--~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGS--TQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcc--eeeeeccccCchHHH
Confidence 66788999999999999999999999999999999998665 5678999999999999998 44443 3333 5679
Q ss_pred EECCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCC---CCeEEEEEEcCCCCEE
Q 001176 479 WDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAP---GNWCTMMAYSADGTRL 553 (1132)
Q Consensus 479 wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~l 553 (1132)
|++.+ +...++|.+ -.++.|+... ..-+.|..-....+||+.+.....++ ... ...-.+..|+|+.+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99764 444555543 3455665432 33445555567889999988776542 221 2234678899999888
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
+-- | .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.+...+.- .-.
T Consensus 1246 lnd-------G--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L----dqc 1305 (1516)
T KOG1832|consen 1246 LND-------G--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL----DQC 1305 (1516)
T ss_pred eeC-------c--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccc----cce
Confidence 753 2 5799998888777765542 223569999999988765 8999999888776543 236
Q ss_pred eEEEcCCCCEEEEE
Q 001176 634 RLRFNKEGSLLAVT 647 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~ 647 (1132)
.+.|+..|..++..
T Consensus 1306 ~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEEeccCccchhhh
Confidence 78888888766543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-06 Score=89.49 Aligned_cols=214 Identities=10% Similarity=0.152 Sum_probs=145.6
Q ss_pred cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC--C-eEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEE
Q 001176 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 523 (1132)
Q Consensus 448 ~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~--~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~w 523 (1132)
-|...|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|-..|.+++.+. ++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEE
Confidence 37777877766543 4 799999999999997432 1 23455677888888888765 4478888777 9999999
Q ss_pred EcCCCCceEEecC--CCCeEEEEEEcCC-CCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCE
Q 001176 524 LYDYLGSRVDYDA--PGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 524 d~~~~~~~~~~~~--~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1132)
|+.+-...-.+.. ..+.+.. ..++. -..+++.+. -.++.+.++|-.... ...-+.+.+..+|.++.+.+.+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 9887554422221 1222222 12222 222333332 247789999976543 445555555558999999999999
Q ss_pred EEEEEcCCeEEEEECCC------CeeEEEEeC-------CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 600 FLAAGDEFQIKFWDMDN------MNMLTTVDA-------DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
+++....|.|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|++++..++ ++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999998873 111111111 122345689999999999999999999999999998 6665
Q ss_pred eccc
Q 001176 667 MLEG 670 (1132)
Q Consensus 667 ~~~~ 670 (1132)
.+..
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 5543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.1e-06 Score=86.25 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=135.9
Q ss_pred CCeEEEEECCCCeEEEEeeCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 857 GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 857 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
+|+|..||..+|+.+....-- .....+..+ + ++..+++++.++.|+.||..+|+.+.++.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 588999999999998887531 122222233 2 345666778999999999999998888765 33322222 22455
Q ss_pred EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC-CCCceeecCCCCC
Q 001176 935 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDA 1012 (1132)
Q Consensus 935 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~ 1012 (1132)
.++.++.|+.++.+|..+++..-.......... ..........++..++++ .++.+..+|. +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 666666888999999999886443211111110 011112222236667775 4899999998 6766555543221
Q ss_pred CC-CC------eEEEEEccCCCEEEEEecCCc-EEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEE
Q 001176 1013 LP-AP------ISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1084 (1132)
Q Consensus 1013 h~-~~------i~~i~~s~dg~~las~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 1084 (1132)
.. .. +..-....++ .++.++.+|. +.+ |+.+++.+-... . + .+.. ...+ .+..|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~----------~--~~~~-~~~~-~~~~l~ 216 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-I----------S--GIYS-LPSV-DGGTLY 216 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-S----------S---ECE-CEEC-CCTEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-C----------C--CccC-Ccee-eCCEEE
Confidence 11 11 1222222345 7777777885 555 999998653221 1 0 0111 1223 567788
Q ss_pred EEeCCCcEEEEecCCCccccc
Q 001176 1085 LGMSDGAVHVVEPSDAELKWG 1105 (1132)
Q Consensus 1085 s~~~Dg~i~vW~~~~~~~~~~ 1105 (1132)
.++.|+.|..||+.+++..|.
T Consensus 217 ~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 217 VTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEETTTEEEEEETTTTEEEEE
T ss_pred EEeCCCEEEEEECCCCCEEeE
Confidence 777999999999999998884
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.7e-05 Score=78.18 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=144.1
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc-CCCCeEEEEeCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 426 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~las~~~d 426 (1132)
++.|.+....|+++....+.|..|+..++..... .......+++. +++.++ .+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~g~l~-v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI----------------------DLPGPNGMAFDRPDGRLY-VADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------ESSSEEEEEEECTTSEEE-EEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------ecCCCceEEEEccCCEEE-EEEcC
Confidence 6788984444788888889999999988764321 11126677787 665554 44455
Q ss_pred CeEEEEEecCCCceeeeeeee--c-ccCCEEEEEEecCCCcEEEEEEcCC--------CcEEEEECCCCeEEEEecCCCC
Q 001176 427 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~--~-h~~~v~~v~~s~d~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
+ +.++|..+++.. ...... . .....+++++.|+|+ +.++.... |.|..++.. ++...... .-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 5 566698887433 332332 1 345788999999998 56665433 557777766 55443333 345
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-e---E---EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-R---V---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~---~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
..+.|+|++++. .++++-+..+.|..++++.... . . .+....+..-.+++..+|+..++.. ..+.|.+
T Consensus 135 ~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~ 209 (246)
T PF08450_consen 135 FPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVV 209 (246)
T ss_dssp SEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEE
T ss_pred cccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEE
Confidence 678999988652 3456778889999999875443 1 1 1222233588899999998777654 3677999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEE
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 604 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1132)
+|.+ |+.+..+..... .+++++|. ++.+.|+..+
T Consensus 210 ~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred ECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 9988 888888877644 78889994 6666666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-05 Score=83.62 Aligned_cols=249 Identities=13% Similarity=0.155 Sum_probs=148.2
Q ss_pred ccCCCCcCeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 400 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
++.+|...|..++|||..+ ++..++.+..|.|.|+++...+. .+..| ..+++++|.-|..+ +|+.|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999877 78889999999999999976554 34556 78999999999876 8999999999999
Q ss_pred EECCCCeE-EEEecC--CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEcCCCC--ceEEecC-CCCeEEEEEEcC
Q 001176 479 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA-PGNWCTMMAYSA 548 (1132)
Q Consensus 479 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~-~~~~v~~~~~s~ 548 (1132)
+|++..+- +..+.+ ...+|..++..+.. .|.+++..+.+ +..|.+.... ....... ..+...++++.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 23445444422211 12444444433 3455543222 2222222 234555666666
Q ss_pred CCCEEEEEecCCCCCCeEEE----EeCCCCceeeeec-cc---cCCc---eEEEEEeCCCCEEEE-EEcCCeEEEEECCC
Q 001176 549 DGTRLFSCGTSKEGESHLVE----WNESEGAIKRTYS-GF---RKRS---LGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 616 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~----wd~~~~~~~~~~~-~~---~~~~---v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1132)
-.+.++....++.+-.+++. -|-.+|..+..-+ ++ .... -..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 55666555443211111111 1222333222111 11 1000 111222445566665 55778999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcC-CC-CEEEEEeCCCcEEEEEcC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNK-EG-SLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~~dg~i~iw~~~ 659 (1132)
++.++++... .+|..++... +| .+|+.-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 2566666544 33 4555544 5588888654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=86.12 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=162.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccccc---ceeeeecccccccccccccC--CCCcCeEEEEEcCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK---PFKVWDISAASMPLQNALLN--DAAISVNRCVWGPD 416 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd 416 (1132)
..+.|++|.|...|. +|++|...|.|.++.-.....-..+ .|...++. -..++ .-...|..+.|..+
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------FDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------FDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc-------hhhhhhccHHHHhhheeeecC
Confidence 457899999999998 6999998899999986543210000 01100000 00011 12346888888876
Q ss_pred CC--eEEEEeCCCeEEEEEecCC------------------C-ce--------------------e-eeeeeecccCCEE
Q 001176 417 GL--MLGVAFSKHIVHLYTYNPT------------------G-EL--------------------R-QHLEIDAHVGGVN 454 (1132)
Q Consensus 417 g~--~las~~~dg~i~iwd~~~~------------------~-~~--------------------~-~~~~l~~h~~~v~ 454 (1132)
+. .++..+.|.+|++|.+... + .+ . +...-..|.--|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 54 4555568999999997542 0 00 0 0001245777789
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---EEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEcC
Q 001176 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~ 526 (1132)
++.|..|.. .++++ .|-.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++
T Consensus 177 SiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 177 SISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhh
Confidence 999999887 56655 578899999764322 23334443 3477788888754 566777788999999998
Q ss_pred CCC------ceE--E--------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC-ceeeeeccccC----
Q 001176 527 YLG------SRV--D--------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK---- 585 (1132)
Q Consensus 527 ~~~------~~~--~--------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~---- 585 (1132)
... ... . +..-...|..+.|+++|+++++-. -.++.+||.+.. .++.++.-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHH
Confidence 321 111 1 111233688899999999999864 457999999854 46666543321
Q ss_pred -------Cce---EEEEEeCCCCEEEEEEcCCeEEEEE
Q 001176 586 -------RSL---GVVQFDTTRNRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 586 -------~~v---~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1132)
..| ..+.|+.|...+++|+..+..-++-
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 122 2377888888888888776666664
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-05 Score=83.36 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=138.6
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeecc
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~ 505 (1132)
+|+|..||..+|+.+-.. .+..-.....+. ..+++. .+++++.++.|..||..+|+.+.++.. ...+.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~---~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP---V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---E
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---e
Confidence 688999999888766543 221111122221 333455 577778899999999999999877764 22211111 1
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCceEEe-cCCC---CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 506 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
..+..++.++.++.++.+|..+++..... .... ..........++..++++.. ++.|+.+|+++|+.+....
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 12256777778899999999999888773 3221 11122233333777777753 6779999999999988876
Q ss_pred cccCCc---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 582 GFRKRS---------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 582 ~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
...... +..-....++ .++.++.++.+..+|..+++.+.... .. .+.. ....++..|++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 643211 1122222234 77777777754444999999765333 11 2222 13467788888889999
Q ss_pred EEEEEcCCccee
Q 001176 653 IKILANSDGVRL 664 (1132)
Q Consensus 653 i~iw~~~~~~~~ 664 (1132)
|..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999999543
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.9e-05 Score=76.87 Aligned_cols=230 Identities=13% Similarity=0.089 Sum_probs=150.6
Q ss_pred EEEEEcC-CCCeEEEEeCCCe-EEEEEecCCCceeeeeeeecccC--CEEEEEEecCCCcEEEEEE-----cCCCcEEEE
Q 001176 409 NRCVWGP-DGLMLGVAFSKHI-VHLYTYNPTGELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTC-----GDDKMIKVW 479 (1132)
Q Consensus 409 ~~v~~sp-dg~~las~~~dg~-i~iwd~~~~~~~~~~~~l~~h~~--~v~~v~~s~d~~~~~l~s~-----~~dg~v~vw 479 (1132)
..++.+| ++..++.+-.-|+ ..+||..+++..... ....+ ---.-+||+||+ +|++. +..|.|-||
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~---~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL---WAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVY 82 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE---cCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEE
Confidence 3578888 5667777877765 789999998766532 11111 122468999999 66665 335799999
Q ss_pred ECC-CCeEEEEecCCCCCeEEEEeeccCCccEEEEEe------------------cCCeEEEEEcCCCCceEE--e--cC
Q 001176 480 DVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------------------IDGKIKAWLYDYLGSRVD--Y--DA 536 (1132)
Q Consensus 480 d~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s------------------~dg~i~~wd~~~~~~~~~--~--~~ 536 (1132)
|.. +.+.+.++..|.-.-..+.+.|++ ..|+.+- .+-.+..-|..+++.+.. + ..
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 998 667788888777666677776654 4555541 223344556666665554 3 23
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCC---CCCeEEEEeCCCCceeeeeccc------cCCceEEEEEeCCCCEEEEEE-cC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKE---GESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAG-DE 606 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~---~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~d 606 (1132)
+...+..+++.++|..++..-..++ .-.-+.+++. ++.+..+... -.+.+-+|++++++..+++.+ ..
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 5568999999999988776654322 1223444443 3323322211 123688999999998887766 77
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 607 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
+.+.+||..+++.+...... .+..++..+++ ++++.+ .|.+
T Consensus 239 g~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred CEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccE
Confidence 89999999999999887654 45677777777 455443 4443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-06 Score=89.50 Aligned_cols=255 Identities=13% Similarity=0.065 Sum_probs=175.9
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVV 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~ 482 (1132)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.....+..|.+.|.+++.+-|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776654 567899999999999998655333444445678999999999999998 8899777 9999999998
Q ss_pred CCeEEEEec--CCCCCeEEEEeeccCCc--cEEEEEecCCeEEEEEcCCCCceE--EecCCCCeEEEEEEcCCCCEEEEE
Q 001176 483 AGRKQYTFE--GHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 483 ~~~~~~~~~--~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+-..+.-++ .-.+.+..+. ..++- .+-++.-.++.+.++|-....+.. .-..|..+|..+.+++-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a~wv~--skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVT--SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCceEEec--CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 765443222 1122222221 11111 233444568889999987665433 445678899999999999998887
Q ss_pred ecCCCCCCeEEEEeCCC------Cceeeeecc--------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEE
Q 001176 557 GTSKEGESHLVEWNESE------GAIKRTYSG--------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~------~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1132)
+..|.|..|.... .+....++. .......++.|+|++..+.+-+.|..|++++..+++.++.
T Consensus 163 ----D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 163 ----DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ----cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 3478899998762 111111111 0112567899999999999999999999999999887654
Q ss_pred EeCCC-------------------------------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 623 VDADG-------------------------------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 623 ~~~~~-------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
+.... +...-..+.|...|++|+.++-= .|++.++.++ ...+.+.
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn-~v~ri~g 314 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN-TVVRILG 314 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC-eEEEEec
Confidence 43110 01123457788888998888765 5788899888 6666553
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00048 Score=67.51 Aligned_cols=140 Identities=9% Similarity=-0.049 Sum_probs=92.8
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
.+++.|+..+.+.--|..++........ +.++.+-+.- -|++++.+.. .+.+++.+.++|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5677777777777777777665553322 2233333322 4667777775 66699999999988887765443 11
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
......+++..+..|+.|+..+..|..+...+...+..+. ...+-+..|-...|+.+...|.+..-.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEEEEc
Confidence 2245678899999999999999999999999988776554 334445566223444455555554433
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=89.37 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCC--------ccHHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEI 76 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1132)
+.-+.|+|..||..+||.++|..|-++|.+. .++...++++++|+...|+.-...-...- .+....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~L-kK~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVEL-KKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-HhccchhhhHH
Confidence 3457899999999999999999999999985 23778899999999888876554321110 02233478999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 001176 77 RKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR 125 (1132)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 125 (1132)
..|.|+||+..+++.+|+.+.++++.|....+.++++....++.++...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999888999999999999886443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-05 Score=89.02 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=75.9
Q ss_pred EeeCCCEEEEeeCCeEEEEECCC-----CeEEEEeeCCCCCeEEEEEeCCCCCeEEE-EeCCCcEEEEEccccee-----
Q 001176 845 LSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEV----- 913 (1132)
Q Consensus 845 ~s~dg~~la~~sdg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~----- 913 (1132)
+.+||++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457887665 467899999988 34555554 445678899999 6766554 55689999999987542
Q ss_pred -------eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 914 -------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 914 -------~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
..+..- ...-...+|.++|....|...|..|..|++..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 22334678999999888999999999999986
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.3e-07 Score=91.58 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=124.5
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
.++||-+-.-+-++.+.+..|-+-|+++|-... + ..++.|.++.|...+.++..|+.+|
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRng 274 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNG 274 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCC
Confidence 337775432223444557889999999885432 2 2677899999999999999999999
Q ss_pred eEEEEEecCCCc--eeeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeE---EEEecCCCCCeEEEE
Q 001176 428 IVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVC 501 (1132)
Q Consensus 428 ~i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~~~v~~i~ 501 (1132)
.|..+|++.+.. ..+...+ .|...|+++.... +++ +|++.+.+|.|++||.+--++ +.++.||-..-.-+-
T Consensus 275 eI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~ 351 (425)
T KOG2695|consen 275 EIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP 351 (425)
T ss_pred cEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccc
Confidence 999999987521 1111122 4889999998877 555 788888999999999987666 889999977666665
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 537 (1132)
++-++....+++++.|...|+|.++.+.....+...
T Consensus 352 ~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 352 AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 555555578999999999999999988776665543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.4e-05 Score=77.93 Aligned_cols=285 Identities=10% Similarity=0.107 Sum_probs=162.7
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----------cCCeEEEEECCCCeeEEEEeCCCC-----
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 628 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 628 (1132)
++++++|..+++.+-.+.... ...+..+|+++.+++++ ..-.|.+||..+..+...+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 469999999999887776543 23366899999988753 234689999999998887765532
Q ss_pred CCCcceEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCC
Q 001176 629 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 706 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 706 (1132)
.......+++.||+++++... ...|.+.|+..+ +....+...... .
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~----------------------------~--- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCW----------------------------L--- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEE----------------------------E---
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEE----------------------------E---
Confidence 123456778888888776544 457788888776 444444322110 0
Q ss_pred CCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEe
Q 001176 707 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 786 (1132)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 786 (1132)
.....+..+...++||.+....++.......... ..-......-+..-++...+..++-
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEE
Confidence 1112234566777888888888875333221111 1111112222334445555555555
Q ss_pred ecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee----CC----
Q 001176 787 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG---- 858 (1132)
Q Consensus 787 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s----dg---- 858 (1132)
.+-+|.|+--++........ .-|.+.+...... +.. .+.-.-+++++..+.|.+.- ++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~---------~~~~~~t~~e~~~---~Wr--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFG---------KPWSLLTDAEKAD---GWR--PGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEE---------EEEESS-HHHHHT---TEE--E-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred EecCCEEEEEeccCCccccc---------CcccccCcccccc---CcC--CcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 66777777776654332111 1122111110000 000 12233466766555444431 12
Q ss_pred ---eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEcccceeeeeecc
Q 001176 859 ---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 859 ---~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
.|.++|+.+++.+..+.. ..++.+|+++.++..+|...+ .++.+.+||..+|+.+++++.
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 399999999999999873 346789999996665665544 578999999999999988764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.3e-05 Score=84.05 Aligned_cols=268 Identities=15% Similarity=0.209 Sum_probs=147.0
Q ss_pred ccCCCeEEEEE--------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 352 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 352 spdg~~lla~g--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888655522 224678889988876543 12225678899999999999998
Q ss_pred eCCCeEEEEEecCCCceeeeeeeec-------c---------cCCEEEEEEecCCCcEEEEEEc-CCCcE----------
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKMI---------- 476 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~v~~s~d~~~~~l~s~~-~dg~v---------- 476 (1132)
. ++.|.+++..++...+. +..| - -+.-..+.||||+++ |+... .+..|
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 4 57899998877643321 1222 0 112357889999995 43322 12222
Q ss_pred -------------------------EEEECCCCeEEE-E-e---cCCCCCeEEEEeeccCCccEEEEEecCC---eEEEE
Q 001176 477 -------------------------KVWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAW 523 (1132)
Q Consensus 477 -------------------------~vwd~~~~~~~~-~-~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~w 523 (1132)
.|+|+.+++... . . ..-..-+..+.|.+++..-.+.....+. .+.++
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~ 215 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC 215 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE
Confidence 234444443211 0 0 1123345566666554211222222222 35566
Q ss_pred EcCCCCceEEecC-CCCeE---EEEEEc-CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce-EEEEEeCCC
Q 001176 524 LYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDTTR 597 (1132)
Q Consensus 524 d~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~~~ 597 (1132)
|..++........ ..+.| ....+. +++..++..+. +++-.+|++++...+.......+.- .| ..+.+++++
T Consensus 216 d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~--~V~~i~~~d~~~ 292 (353)
T PF00930_consen 216 DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDW--EVTSILGWDEDN 292 (353)
T ss_dssp EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS---EEEEEEEECTS
T ss_pred ECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCce--eecccceEcCCC
Confidence 7766555443322 22222 244554 78877776665 6778889999988777443333322 45 457888888
Q ss_pred CEEEEEE-c----CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 598 NRFLAAG-D----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 598 ~~l~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+.++..+ . ...|+.-++..+.....+...... ...+.|||+|++++....
T Consensus 293 ~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 293 NRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 7776543 3 335666677633444555544332 158999999998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=83.42 Aligned_cols=198 Identities=17% Similarity=0.168 Sum_probs=118.3
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccce------------eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------------~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
++.+.|+. ...|+++..++.+......++. ....+..|.++-.+=+.+--++.+++++.||.+.+.
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 44455543 3455555555554444333222 223333344433333334456789999999999999
Q ss_pred ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC------CeEEEEeCCCCceeecCCCCCCCCCeEEEEE
Q 001176 949 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE------SQISVYDSKLECSRSWSPKDALPAPISSAIY 1022 (1132)
Q Consensus 949 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d------~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~ 1022 (1132)
+.+.-..... +....+ ..-...+.-..+.++.++.- +..+.|+... ...+.....-...|++++-
T Consensus 117 s~~~~~~~~~---~i~~~~----~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p--~~t~~~~~~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLALMS---RIPSIH----SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP--IKTLIPSKKALDAVTALCS 187 (319)
T ss_pred echHHHhhhh---hccccc----ccccccceeecccEEecCCcceEeeccceeeecccc--cccccccccccccchhhhC
Confidence 9876221111 111111 11122233344555555332 3345555522 2222221111345899988
Q ss_pred ccCCC-EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1023 SCDGL-LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1023 s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.|..+ .+++|+.||.+.+||++...... .....|...+..+-|+|.++..|++++.||.+..||.++
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~----------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPV----------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchH----------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 88655 67788999999999999875433 333577888899999999999999999999999999986
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.5e-05 Score=88.06 Aligned_cols=278 Identities=11% Similarity=0.171 Sum_probs=159.1
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
+.|.++.|.-++.. ++.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++..
T Consensus 69 ~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence 58999999999985 6667788999999887765432 23456789999999999999999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecc---cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEE
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAH---VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYS 499 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h---~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~ 499 (1132)
+..+++.+-+.. -..+.. ..+... .+..-.+-|-....+ +-|+ .|....-+.... +.+... ...+.=++
T Consensus 128 T~~~tll~mT~~-f~~i~E-~~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~ 200 (1265)
T KOG1920|consen 128 TGRQTLLFMTKD-FEPIAE-KPLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQI-EQDDHKTS 200 (1265)
T ss_pred eCCcEEEEEecc-ccchhc-cccccccccccccceeccccccee---eecc-hhhhcccccccccccccch-hhccCCce
Confidence 888877765432 111110 011000 111222333222221 1111 111111110000 000000 11222345
Q ss_pred EEeeccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-
Q 001176 500 VCPHHKESIQFIFST-----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE- 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~-----s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~- 573 (1132)
|+| .+||.++++. ...+.|++||.+ +.....-....+.-.+++|-|.|..+++..... .++.|.++.-+.
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~-sd~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT-SDSDIVFFERNGL 276 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC-CCCcEEEEecCCc
Confidence 677 4566888773 333789999876 322222223334556899999999998876544 355788887542
Q ss_pred --CceeeeeccccCCceEEEEEeCCCCEEEE---EEcCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcCC-CCEEE
Q 001176 574 --GAIKRTYSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKE-GSLLA 645 (1132)
Q Consensus 574 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~-~~~l~ 645 (1132)
|+....+..... .+..++|+.++..|++ ......|++|-..+... .+.+..... .-+.|+|. ...|.
T Consensus 277 ~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred cccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 222222222222 3888999999998888 44666699999887553 333333322 22788883 33444
Q ss_pred EEeCCCcEEEEEc
Q 001176 646 VTTSDNGIKILAN 658 (1132)
Q Consensus 646 ~~~~dg~i~iw~~ 658 (1132)
+-..+|...+++.
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446776666654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-06 Score=94.78 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=133.8
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 455666666 788999999999888887766666776665 6689999999999999999999999999999999976
Q ss_pred EEEcCCCCEEEEEcC---------CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC--CcEEEEEeCCeEE
Q 001176 927 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND--QTHLLVVHESQIS 995 (1132)
Q Consensus 927 l~~spdg~~l~s~~~---------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~d~~v~ 995 (1132)
+.. .|+.|+|||. |.-|++||+..-+.+. +++...+ ..-+.|.|. .+.++++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 7899999984 5568999998755433 2222222 234566664 3344447889999
Q ss_pred EEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 996 VYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 996 vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
+-|. -.+........+..+..++++.+|++|..+|.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8885 1222111111122256699999999999999999999999998
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=62.04 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.1
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
++++.++.+|.+.|++|+|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00075 Score=80.41 Aligned_cols=275 Identities=14% Similarity=0.145 Sum_probs=152.8
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
.|.++.|..+.+.++.+...|.|.+-|..+......-... ..|.+++|+||+..++..+..+++.+-...-..-..+
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 6888899999999999999999999988776543332222 3689999999999999999988887654211100001
Q ss_pred eccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceee
Q 001176 667 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 746 (1132)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 746 (1132)
.+ + +.....++++-.|+...-.-
T Consensus 147 ~L--~-------------------------------------------------------~d~~~~sk~v~VGwGrkeTq 169 (1265)
T KOG1920|consen 147 PL--D-------------------------------------------------------ADDERKSKFVNVGWGRKETQ 169 (1265)
T ss_pred cc--c-------------------------------------------------------cccccccccceeccccccee
Confidence 11 0 00011112222222211111
Q ss_pred eecCCCCCCCcceEE--e-cCCcccccceEEEEEecCCceEEeec-----ccceeEEEeeccccCCCCCccccccccccc
Q 001176 747 WRIPDISDPSQIKAL--R-LPDSIAASKVVRLIYTNSGLSLLALA-----SNAVHKLWKWQRTERNPSGKATANVAPQLW 818 (1132)
Q Consensus 747 w~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~~s~~g~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~ 818 (1132)
+.-..+......... . .......+.=+++.|--||+++++.. ....++|||.+
T Consensus 170 frgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE------------------- 230 (1265)
T KOG1920|consen 170 FRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE------------------- 230 (1265)
T ss_pred eecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-------------------
Confidence 111110000000000 0 00001223345688999999887732 22678888653
Q ss_pred cCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee----CCeEEEEECCCC---eEEEEeeCCCCCeEEEEEeCCCC
Q 001176 819 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GGKVSLFNMMTF---KVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s----dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
|.+.....+. .+.-.+++|-|.|..+|+.. |+.|.+|.-... +....+.....+|..++|+. ++
T Consensus 231 ----g~Lns~se~~----~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~s 301 (1265)
T KOG1920|consen 231 ----GALNSTSEPV----EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NS 301 (1265)
T ss_pred ----chhhcccCcc----cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CC
Confidence 2211111111 33345799999999999874 567999986532 22222333344589999999 89
Q ss_pred CeEEE---EeCCCcEEEEEcccce--eeeeeccccCCeeEEEEcCCC-CEEEEEcCCCcEEEEECC
Q 001176 892 NIIAI---GMEDSSVQIYNVRVDE--VKTKLKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSID 951 (1132)
Q Consensus 892 ~~las---g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg-~~l~s~~~D~~i~iwd~~ 951 (1132)
.+||+ ......|++|-+.+.. +...+.-..... +.|+|-. ..|..-..+|...++++.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 99998 4444559999887643 222232222222 7888843 233333356666666554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=88.45 Aligned_cols=163 Identities=13% Similarity=0.199 Sum_probs=122.6
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC----Cce
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GSR 531 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~ 531 (1132)
++|+-+-.... ++.+.+..|-+-|+++|... .|. ....|.++.|.... +++..|...|.|..+|++.. ...
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 36664433324 55566778889998887642 343 56778888887654 79999999999999999876 344
Q ss_pred EEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccCCc-eEEEEEeCCCCEEEEEEcC
Q 001176 532 VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRS-LGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 532 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d 606 (1132)
.....|+..|+++..-. ++++|++.+. ++.|.+||.+.-++ +.++.||.... ..-+...+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 45556888899988777 6777777654 78899999987666 89999986522 2224456677889999999
Q ss_pred CeEEEEECCCCeeEEEEeCCC
Q 001176 607 FQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~ 627 (1132)
...|||.++.+.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999999987553
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.013 Score=68.74 Aligned_cols=229 Identities=11% Similarity=0.100 Sum_probs=130.4
Q ss_pred CCEEEEeeCCeEEEEECCCCeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeC-----------C---CcEEEEEcccce
Q 001176 849 DSYVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGME-----------D---SSVQIYNVRVDE 912 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~-----------d---g~v~iwd~~~~~ 912 (1132)
+..++.+..+.+++.-++.-+. +++.. -......+++.+ ....+++.+. . ..++++|-.+.+
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 3466777777777766654322 23332 223455666665 3444443321 1 246677766655
Q ss_pred eeeeecccc----CCeeEEEEcCC-CCEEEEEc----------CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeE
Q 001176 913 VKTKLKGHQ----NRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 913 ~~~~l~~h~----~~V~~l~~spd-g~~l~s~~----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
.+...+-.. ..|.+..|..| +.+++.|. ..|.|.++.+.....+....-....| ...
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G--------av~ 833 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG--------AVY 833 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc--------cee
Confidence 444322111 13455568777 56666664 24778888877633222211111111 122
Q ss_pred EECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC--CcceecccCCC
Q 001176 978 QFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE--TLRFRCRIGPS 1055 (1132)
Q Consensus 978 ~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~--~~~~~~~~~~~ 1055 (1132)
+.---...++++-+..|++|+.+.+..... ...|..++..+...-.|..+++|..-++|.+.... .|...-.-.
T Consensus 834 aL~~fngkllA~In~~vrLye~t~~~eLr~--e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-- 909 (1096)
T KOG1897|consen 834 ALVEFNGKLLAGINQSVRLYEWTTERELRI--ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-- 909 (1096)
T ss_pred ehhhhCCeEEEecCcEEEEEEccccceehh--hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--
Confidence 333334456667788999999955522222 23457889999999999999999988888775544 433432211
Q ss_pred ccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1056 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1056 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
. -++.+.+++.+- +++.++.+..+|.+.+-...+..
T Consensus 910 D--------~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 910 D--------YNPNWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred h--------hCccceeeEEEe--cCceEEeecccccEEEEEecCCC
Confidence 1 334566677666 45677777888988887776533
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-05 Score=90.11 Aligned_cols=335 Identities=12% Similarity=0.116 Sum_probs=180.5
Q ss_pred EEEEEeCCCCEEEEEE----cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 589 GVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
+..+|+|...++++++ ..|.|.|| .++|++.....-+- .+.+++|+|..-.|+.|-.-|.+.+|...+. +.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCc-ee
Confidence 3467899888888876 56788888 35666554443322 3678999999999999999999999987654 11
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
....
T Consensus 94 htv~---------------------------------------------------------------------------- 97 (1416)
T KOG3617|consen 94 HTVV---------------------------------------------------------------------------- 97 (1416)
T ss_pred eeec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 824 (1132)
..|...|..+.||++|..++++..-|.+.+|.+.... . +.+..
T Consensus 98 ---------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g-----~-----------~q~~~ 140 (1416)
T KOG3617|consen 98 ---------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG-----E-----------IQTSN 140 (1416)
T ss_pred ---------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc-----c-----------cccch
Confidence 1166788999999999999999999999999875211 0 11111
Q ss_pred cccccCCCCCCCCCCeeEEEEeeCCC------EEEEee-CCeEE-EEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEE
Q 001176 825 LMTNDINESKPTEESAACIALSKNDS------YVMSAS-GGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 896 (1132)
Q Consensus 825 ~~~~~~~~~~h~~~~v~~~~~s~dg~------~la~~s-dg~i~-vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las 896 (1132)
++...+.. .-...|..+++++. ..++.+ +..+- .++......-+... |.+ .| +|..+..
T Consensus 141 ~~~hel~~----~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ksg-------v~-~g~~F~~ 207 (1416)
T KOG3617|consen 141 IMQHELND----QLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KSG-------VP-KGTEFLF 207 (1416)
T ss_pred hhhhHhhc----eeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-ccC-------CC-CCcEEEE
Confidence 22222222 22334555666643 223333 33332 44433111111111 111 25 6777778
Q ss_pred EeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCcee
Q 001176 897 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 976 (1132)
Q Consensus 897 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 976 (1132)
++.+|+|+-.|- .|+.....+.. +. ..+-|.+-...++..-.+-.+.++-+.........+.....|....
T Consensus 208 ~~~~GtVyyvdq-~g~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg------ 278 (1416)
T KOG3617|consen 208 AGKSGTVYYVDQ-NGRQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG------ 278 (1416)
T ss_pred EcCCceEEEEcC-CCcEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC------
Confidence 889999887773 44444443322 11 2344555444455454555555554432221111111112222110
Q ss_pred EEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCc
Q 001176 977 VQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1056 (1132)
Q Consensus 977 ~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~ 1056 (1132)
..|. ++++.... |...+.+ + +......+++++++..+..|+.|...|.+.+|--....++..-....
T Consensus 279 ----rqGg-iA~sEssG--vLr~~eK----y--g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~ 345 (1416)
T KOG3617|consen 279 ----RQGG-IACSESSG--VLRKSEK----Y--GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDV 345 (1416)
T ss_pred ----ccCc-cccccccc--cccCCcc----h--hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcce
Confidence 0121 33321111 1100000 0 11115689999999999999999999999999644332222111111
Q ss_pred cccccccCCCCCCcEEEEeCC
Q 001176 1057 YIPTYAVSSNTAHPLVIAPHP 1077 (1132)
Q Consensus 1057 ~~~~~~~~~~~~~v~~~~~~p 1077 (1132)
+. ..-...-...+..+.|.|
T Consensus 346 w~-l~~~~e~~g~I~~i~Wg~ 365 (1416)
T KOG3617|consen 346 WT-LNGKRESLGKISLIRWGP 365 (1416)
T ss_pred EE-ecCchhhccceEEEEecc
Confidence 10 011112335678888988
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00037 Score=73.20 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=125.2
Q ss_pred eEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc-cceeeee
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK 916 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~ 916 (1132)
..+++|.||+++.+.. .-+|.|.|+..++.+.++..+. +..+- |.+.+-+.+.+.||++.-..+. .|+...+
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEE--ecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 3467888999888876 4679999999999988887432 22222 2233557788899999988887 4554322
Q ss_pred ----eccccCCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCC----CCCCCCceeEEECCCCcEEE
Q 001176 917 ----LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR----QSPLVGETKVQFHNDQTHLL 987 (1132)
Q Consensus 917 ----l~~h~~~V-~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~ 987 (1132)
|..-.+++ ..-+++..+..++-.+-+|.|+--|+......-.......... .-.+..-..+++++..++|.
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 22222222 2334555556666677888888888876553222222211100 00013445688888776666
Q ss_pred EE-e---C-----C--eEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC-EEEEE-ecCCcEEEEeCCCcceecccC
Q 001176 988 VV-H---E-----S--QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 988 ~~-~---d-----~--~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~-~las~-~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
+. + + + .|-+||+ +.+.+..+.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|+.++.+.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 62 2 2 2 3667777 6777777654 34688999998877 55544 457999999999999998875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00015 Score=82.42 Aligned_cols=183 Identities=13% Similarity=0.027 Sum_probs=115.7
Q ss_pred EEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC----cEEEEEcccceeeee
Q 001176 843 IALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTK 916 (1132)
Q Consensus 843 ~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~ 916 (1132)
+=++|||+.+...+ .+.+.+.|.++.+...++.... ....++++| +++++.+.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34577998776555 5789999999988877766433 456789999 788887775332 233332222221111
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC----cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--e
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK----WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 990 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 990 (1132)
+.-. .+ -++.++|++... .++.|.+.|..+ +.... ..+. .+ .....+.+||||++++++ -
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~-~yIP--VG-----KsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALT-RYVP--VP-----KNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceE-EEEE--CC-----CCccceEECCCCCEEEEeCCC
Confidence 1100 01 133457776654 367899999887 22111 1122 22 235789999999999995 4
Q ss_pred CCeEEEEeC-CCCc------------eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 991 ESQISVYDS-KLEC------------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 991 d~~v~vwd~-~~~~------------~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
+.+|.|+|+ +.+. ...... ...-...+|.++|....+-..|..|..||+.+
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 789999999 3332 222222 22334578999999888889999999999986
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=81.17 Aligned_cols=133 Identities=20% Similarity=0.217 Sum_probs=98.9
Q ss_pred HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001176 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1132)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1132)
...++++|++|+++.|+..+......-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......++++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467899999999999999998764332222 2348999999999999999999999999999997774446788999999
Q ss_pred hhcccCccc--hhhhcccCCchhHHHHHHHHHHhhcccCcccccccCCCCCc-chHHHHHHHHHHHH
Q 001176 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNW 181 (1132)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~ 181 (1132)
+|...+..+ ...+...-+ ...|+.+.+.+.+.+-...- +| .+.|..++++....
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 998876654 233333323 37789999988887654221 33 45688888776543
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-05 Score=83.34 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=162.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...|.--+++..++ +++.|+.-|.+++|+-.+++....+ ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 445666667777787 6999999999999999888765421 223455677788999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeee--e-eecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe----EEEEecCCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHL--E-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHE 494 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~--~-l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~h~ 494 (1132)
.|+..|.|.++-+..+....... . -..|...|+|++|++|+. .+++|...|.|..-.+.... ..+.+-...
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999988744322111 1 123778999999999999 79999999999998877621 112333345
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCC-eEEEEEEcCC----CCEEEEEecCCCCCCeEEE
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGN-WCTMMAYSAD----GTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 568 (1132)
..|..+... ++.+|++.. -+. .+++.+...-...-+. ..+ .-...+|-|. .+-.+.|+.. -.++
T Consensus 171 s~IVQlD~~---q~~LLVStl-~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP-----G~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTL-TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP-----GLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhh-hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecC-----CCce
Confidence 666666543 213333332 222 2333332221110000 111 1223344332 3334444432 2678
Q ss_pred EeCC-CCceeeeeccccC----------------C------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 569 WNES-EGAIKRTYSGFRK----------------R------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 569 wd~~-~~~~~~~~~~~~~----------------~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
|..+ .|+.+++..-... . ....+.+- .+..+++-++-| |+|+|.++.+.
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceE
Confidence 8765 2444443221100 0 00011111 123445544444 88888877665
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcce
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
+.-.... ..|..+ +..|+-|++-..|+.+++..+.+..+
T Consensus 319 ~l~se~~---~DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 319 YLWSEGG---HDILDV--SHCGNEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred EEeecCC---CceeEE--eecCceEEEEecCCceeEEEeehhHH
Confidence 5443222 134333 34466677777788788877766543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.4e-06 Score=59.31 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 868 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 868 ~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
++++.++.+|.+.|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00014 Score=82.99 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=136.3
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCC-eEEEEEeCCCCCeEEEEeCCC-----cEEEEEcccc----
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVD---- 911 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~---- 911 (1132)
-++++.+..++.|+ +|.|.+.+- +.+.++.+..+... |+.+.... +..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45678889999998 899988884 45666788887777 55555544 556888777665 4899998743
Q ss_pred --eee--eeecc-----ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC
Q 001176 912 --EVK--TKLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 912 --~~~--~~l~~-----h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
+++ .++.. ...++.+++.|.+-+.+|.|-.+|.|..+.-+--.....+..-...+ ..+|+.+++-.|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence 223 12222 24568899999999999999999999988654322222212112222 268999999999
Q ss_pred CcE-EEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 983 QTH-LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 983 g~~-l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
++- ++++.-..|.+|.++++. ........|+.++.+-.|++.-.-+++++ +..+.+|+......
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 987 555778899999997665 22222355688899998887554355444 46799999985444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.5e-05 Score=84.38 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=133.4
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCCCEEEEEcCCCc-----EEEEECCCccccc-
Q 001176 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 957 (1132)
Q Consensus 885 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~~~D~~-----i~iwd~~~~~~~~- 957 (1132)
+|++ ++..+|.|+.+|.|.+++- .-+.+..++++... |+.+-...+..+|++.+.|+. |++|+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4567 7789999999999988873 34555778888777 544444444478999887754 9999997654333
Q ss_pred ceee--eCCCCCCCC--CCCceeEEECCCCcEEEEE-eCCeEEEEeC-----CCCceeecCCCCCCCCCeEEEEEccCCC
Q 001176 958 SRFI--QAPAGRQSP--LVGETKVQFHNDQTHLLVV-HESQISVYDS-----KLECSRSWSPKDALPAPISSAIYSCDGL 1027 (1132)
Q Consensus 958 ~~~~--~~~~~~~~~--~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-----~~~~~~~~~~~~~h~~~i~~i~~s~dg~ 1027 (1132)
..++ ....++..+ ..+++.++.|.+-+.+|+| .+|.|..+.- .+...... +.-..+||.++|-.|++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~---~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS---HRGKEPITGLALRSDGK 184 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee---ccCCCCceeeEEecCCc
Confidence 2233 011111111 3678899999998889987 6888988865 12221211 22278999999999998
Q ss_pred EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1028 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
-++.+.....|.+|.+. |+.... .+...|+...-|.++++..+.+++ + .+..|.+|+...-++-|..
T Consensus 185 s~lFv~Tt~~V~~y~l~-gr~p~~---------~~ld~~G~~lnCss~~~~t~qfIc-a-~~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLS-GRTPSL---------KVLDNNGISLNCSSFSDGTYQFIC-A-GSEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred eeEEEEecceeEEEEec-CCCcce---------eeeccCCccceeeecCCCCccEEE-e-cCceEEEEcCCCcceeeee
Confidence 74444456789999998 443111 012366777778888874443444 3 3667888888765554444
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00048 Score=77.03 Aligned_cols=296 Identities=13% Similarity=0.087 Sum_probs=153.6
Q ss_pred cCCCCEEEEEecC-----CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 001176 547 SADGTRLFSCGTS-----KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 547 s~~~~~l~~~~~~-----~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
|||+++++..... .+..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5788877764320 01245689999999776554444 22677899999999998885 6789999988874443
Q ss_pred EEeCCCC----------------CCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCC---cce---eeeeccccccccccC
Q 001176 622 TVDADGG----------------LPASPRLRFNKEGSLLAVTTS-DNGIKILANSD---GVR---LLRMLEGRAMDKNRC 678 (1132)
Q Consensus 622 ~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~---~~~---~~~~~~~~~~~~~~~ 678 (1132)
+...+. ...-..+.|||||++|+.... +..|..+.+.. ... ....++
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~--------- 147 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR--------- 147 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc---------
Confidence 222220 123467899999999987754 34444443321 100 000000
Q ss_pred CCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc---CceeeeecCCCCCC
Q 001176 679 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV---DKIKSWRIPDISDP 755 (1132)
Q Consensus 679 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~w~~~~~~~~ 755 (1132)
+-..|.. -.+.++++.+....
T Consensus 148 --------------------------------------------------------YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 148 --------------------------------------------------------YPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp ----------------------------------------------------------BTTS---EEEEEEEESSSTCCC
T ss_pred --------------------------------------------------------cCCCCCcCCceEEEEEECCCCcEE
Confidence 0000110 23445565543221
Q ss_pred CcceEEecCC--cccccceEEEEEecCCceEEeeccc---ceeEEEeeccccCCCCCccccccccccccCCCcCc---cc
Q 001176 756 SQIKALRLPD--SIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL---MT 827 (1132)
Q Consensus 756 ~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 827 (1132)
.+..+. ......+..+.|.++++.++....+ ..+.+..+ |..++.. ..
T Consensus 172 ----~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~ 227 (353)
T PF00930_consen 172 ----ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLE 227 (353)
T ss_dssp ----EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEE
T ss_pred ----EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEE
Confidence 222221 2245678899999999855443332 22222222 2222211 11
Q ss_pred ccCCCCCCCCCCeeEEEEe-eCCCEEEEee--CC--eEEEEECCCCeEEEEeeCCCCCeEE-EEEeCCCCCeEEEEeCCC
Q 001176 828 NDINESKPTEESAACIALS-KNDSYVMSAS--GG--KVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGMEDS 901 (1132)
Q Consensus 828 ~~~~~~~h~~~~v~~~~~s-~dg~~la~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~lasg~~dg 901 (1132)
....+ - -..-....+. +++..++..+ +| .|.+++..++.. ..+....-.|+. +.+++.++.+..++..++
T Consensus 228 e~~~~--W-v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 228 ETSDG--W-VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp EESSS--S-SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred ecCCc--c-eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCC
Confidence 00000 0 1112345554 7777666555 54 477788776664 355545556754 678884455555666533
Q ss_pred ----cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEE
Q 001176 902 ----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939 (1132)
Q Consensus 902 ----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 939 (1132)
.|+.-++.++..+..+....+.-..+.|||+|++++-.
T Consensus 304 p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 56556666233445555443333689999999987744
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.5e-05 Score=77.19 Aligned_cols=249 Identities=12% Similarity=0.144 Sum_probs=139.5
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
...+. +...|..++|||..+-++..++.++.|.|.|+++...... +..+ ..+++++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 33444 7789999999998876788999999999999998876653 2334 7899999998
Q ss_pred CCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe------cCCCcEEEEEEcCCCcEEEEECCC--CeE
Q 001176 416 DGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------HPNKQLCIVTCGDDKMIKVWDVVA--GRK 486 (1132)
Q Consensus 416 dg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s------~d~~~~~l~s~~~dg~v~vwd~~~--~~~ 486 (1132)
|.. +|..|..+|.|.|||++..+.......-.-...+|..++.- +-|. +++..+. .+..|.+.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCC
Confidence 765 67777789999999998765433211111123345444433 2333 3333332 245565432 111
Q ss_pred EEEec-CCCCCeEEEEeeccCCccEEEEEecCCe------EEE-EEcCCCCceEE-ecCC-CC------eEEEEEEcCCC
Q 001176 487 QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGK------IKA-WLYDYLGSRVD-YDAP-GN------WCTMMAYSADG 550 (1132)
Q Consensus 487 ~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~------i~~-wd~~~~~~~~~-~~~~-~~------~v~~~~~s~~~ 550 (1132)
...++ +..+...++..++..+ ..|++.-.+-. |-. -|..++..+.. ...+ ++ .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 12121 1234455555554433 34444322110 000 01111111110 0001 11 11122234566
Q ss_pred CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 001176 551 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
++++..+ +..+.+.+||+.+++.++++.... +|..++.. -++.-++..=.|..++||..+
T Consensus 401 n~iv~~g---d~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVG---DSTNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEec---CCcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 6666554 346789999999999999987653 56655543 234333333357788888654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.011 Score=63.64 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=144.6
Q ss_pred CCcccceEEeecCCCCeeE------EEEccCCCeEEEEEcCCCc--EEEEecCCCccccccceeeeeccccccccccccc
Q 001176 330 DDLTKTVVRTLNQGSNVMS------MDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 401 (1132)
Q Consensus 330 d~~~~~~~~~l~h~~~V~~------~~~spdg~~lla~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1132)
|..++..+..|.+...... =+|.+||++||+++..||. +.+-|+.+++..+ |
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------L 75 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------L 75 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------C
Confidence 4455666666654333222 3678999989998877765 5555677776554 2
Q ss_pred CCCC-cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe--cCCCcEEEEEEc-------
Q 001176 402 NDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG------- 471 (1132)
Q Consensus 402 ~~h~-~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s--~d~~~~~l~s~~------- 471 (1132)
.... .......++|+++.++-......|+-.|+++.+.. .. +......+-...|. .|+. .++..-
T Consensus 76 Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~ 150 (386)
T PF14583_consen 76 TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWK 150 (386)
T ss_dssp --SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG--
T ss_pred ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhcc
Confidence 2222 22335677898888876656678888899886643 22 33344555455664 3454 333221
Q ss_pred ---------------CCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec---CC-eEEEEEcCCCCceE
Q 001176 472 ---------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DG-KIKAWLYDYLGSRV 532 (1132)
Q Consensus 472 ---------------~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg-~i~~wd~~~~~~~~ 532 (1132)
..+.|.--|+.+|+....+. -...+.-+.++|..+ .+|+-|-. +. .-|+|-+++.+...
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred CccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 11245556777777544443 456677888888753 34444322 22 13667665543322
Q ss_pred -Eec--CCCCeEEEEEEcCCCCEEEEEec-CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC--
Q 001176 533 -DYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-- 606 (1132)
Q Consensus 533 -~~~--~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 606 (1132)
.+. .....+..=-|.|||..+.-.+. .+..+..|.-+|+.+++........ .......++||++++-=|.|
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p 305 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAP 305 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE----
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCC
Confidence 221 12335666679999998776443 3333567888888887654332221 23345567888877663332
Q ss_pred --------------CeEEEEECCCCeeEEEEeCC--------CCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 607 --------------FQIKFWDMDNMNMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 607 --------------g~i~iwd~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
--|+++++..++........ .....-....|+|||+.++..++ .|...||-+
T Consensus 306 ~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 306 VDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 15677888876654322211 00112256899999998776654 676666644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.1e-05 Score=85.32 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=128.1
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 957 (1132)
...++|++++. ++++.|+.+|.|++++... .. .+...|+.. .-+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35678888854 7999999999999999754 33 444446554 5689999999999999999988766433
Q ss_pred ceeeeCCCCCCCCCCCceeEEECCC-----CcEEEEEeCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEE
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVY 1030 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~la 1030 (1132)
..-.+ .++..++++|| .+.+++|+...+.++.- -++.... ..+.-.++|.++.| .|.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEe--cCcEEE
Confidence 22211 46789999998 45677755444777765 1111111 11222789999999 566777
Q ss_pred EEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1031 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1031 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
=++.+ -|+|||+.+++.+..+.+++..+ .....+-.+.|.+ ...|+.| ---+|++-.+.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~~-----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQSV-----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCCC-----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 77654 59999999999999888665222 2234555688886 3455544 44566777666
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00037 Score=79.18 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=123.9
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 851 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~ 851 (1132)
+.+.+++ ++.++-|+.+|.+++++.+.. +.. ... | ... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~~~--~~~--~-s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------PKT--NFD--H-SSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCc-----------------------ccc--ccc--c-ccc------ccCCce
Confidence 3444443 467888999999999875321 100 000 2 111 568999
Q ss_pred EEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCC----CCCeEEEEeCCCcEEEEEccc--ceeeeeeccccCCe
Q 001176 852 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRV--DEVKTKLKGHQNRI 924 (1132)
Q Consensus 852 la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~----~~~~lasg~~dg~v~iwd~~~--~~~~~~l~~h~~~V 924 (1132)
+++|+ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.= .+.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 8999999998888776665 4567999999993 256788898888 87775321 11112355567889
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1000 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~ 1000 (1132)
.++.| .|+++|-++.+| |++||+.+...+.. +........+......+.|.++.+ |++|-..+|++..+.
T Consensus 164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEe--cCcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99999 588999999888 99999998765432 222222222223455778877764 556666677777774
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-06 Score=51.16 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHc
Q 001176 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1132)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1132)
+++.+||++||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=84.35 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=140.6
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
.++.|+....+...|+++++..+...-....|.-++. ++.++.+|...|+|.+-|.++.+.+..+..|.+.+..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 5777887888899999998887766555555776654 44799999999999999999999999999999988654
Q ss_pred EcCCCCEEEEEecCCC-----CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC-Ce
Q 001176 546 YSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN-MN 618 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~ 618 (1132)
.-.|+.|++||.+.. -|..|.+||++..+.+.-+.-+.+. .-+.|.|.- ..+++++..|...+-|..+ ++
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 457899999987543 2678999999988776666555442 336677764 5678888899999988432 12
Q ss_pred e-EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 619 M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 619 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
+ ......+.....+..+.++++|+.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222222335889999999999999999999999973
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.006 Score=71.35 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=68.0
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC------eEE--EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCT--MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
..++.++.++.+.-.|..+++.+........ .+. .++. .++..++.++ .++.|+.+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~----~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGT----FDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEec----CCCeEEEEECCCCCEeeee
Confidence 4677777788888888888877766544322 000 1111 1224555554 3778999999999998877
Q ss_pred ccccCC--c--eE-EEEEeCCCCEEEEEE---------cCCeEEEEECCCCeeEEEEeC
Q 001176 581 SGFRKR--S--LG-VVQFDTTRNRFLAAG---------DEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 581 ~~~~~~--~--v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
...... . +. ...+. +..++.++ .++.++.+|..+|+.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643320 0 11 11222 24455543 368899999999998887754
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.028 Score=65.90 Aligned_cols=110 Identities=9% Similarity=-0.001 Sum_probs=64.5
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC-eEE----------EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++ .++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 4666677777888888888777766543211 111 1122 123455554 3678999999999988
Q ss_pred eeeccccCCceEEEEEeC--CCCEEEEEE------cCCeEEEEECCCCeeEEEEe
Q 001176 578 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 624 (1132)
..........-..+.-+| .+..++++. .+|.|+.+|.++|+.+-...
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 776532110000011111 123455543 26899999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0006 Score=76.51 Aligned_cols=282 Identities=15% Similarity=0.096 Sum_probs=159.2
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
+...+.--++...+++++.|++.|.+.+|+-.. +........+ - .+.+..+.+|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--A-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--c-cceEEEEEecc
Confidence 445566667778899999999999999996532 2222111111 1 45667778899
Q ss_pred CCCEEEEee-CCeEEEEECCCCeE---EEE--e-eCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce----eeee
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKV---MTM--F-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTK 916 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~---~~~--~-~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----~~~~ 916 (1132)
+..++|.|+ .|.|.++-+..... +.. + ..|...|+|++|++ ++..+.+|...|.|..-.+.+.. ....
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce
Confidence 999999888 68899988765321 111 1 23678899999999 99999999999999998887721 1122
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC----CcEEEEEeCC
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND----QTHLLVVHES 992 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----g~~l~~~~d~ 992 (1132)
+..-.+.|..+... ++..|++...- ..+.+++.+... .+....... ......+|-|. .+-.+++..-
T Consensus 166 il~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~---QIG~k~R~~---~~~~GACF~~g~~~~q~~~IycaRP 236 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETIT---QIGKKPRKS---LIDFGACFFPGQCKAQKPQIYCARP 236 (726)
T ss_pred eeccCcceEEeecc-cceehHhhhhh--hheeecchhHHH---HhcCCCcCC---ccccceEEeeccccCCCceEEEecC
Confidence 33345667666654 44455544432 234444433210 111111000 11345556554 3444455555
Q ss_pred eEEEEeC--CCCceeecCCCCC----------CCC----------------CeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 993 QISVYDS--KLECSRSWSPKDA----------LPA----------------PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 993 ~v~vwd~--~~~~~~~~~~~~~----------h~~----------------~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
..++|.. .|..+++....++ |.. ....+.+-.++ ++.+-++-| |+|+|.+
T Consensus 237 G~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~ 314 (726)
T KOG3621|consen 237 GLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSN 314 (726)
T ss_pred CCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEec
Confidence 5677765 5554444222110 000 01111111222 344444444 8899998
Q ss_pred CcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1045 TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+-+.+..... +| .+..++- +++-|+.=..|+.+++..+.+.+
T Consensus 315 ~~~v~l~se~----------~~--DI~dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 315 NSQVYLWSEG----------GH--DILDVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred cceEEEeecC----------CC--ceeEEee---cCceEEEEecCCceeEEEeehhH
Confidence 7766543321 22 2333332 45666666777777777776655
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0026 Score=70.85 Aligned_cols=252 Identities=16% Similarity=0.216 Sum_probs=135.1
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccc------------------ccceeeeeccccccc------ccccc
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------------------HKPFKVWDISAASMP------LQNAL 400 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~------------------~~~~~~~~~~~~~~~------~~~~~ 400 (1132)
.|+++.|+++... |++|...|.|.||.+..++.-. ...-.+-|+.....+ .+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999875 8888899999999886543221 001223344332221 22334
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeec------ccCCEEEEEEec---CCC---cEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH---PNK---QLCIV 468 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~---d~~---~~~l~ 468 (1132)
+....++|++++.| |=-++|.|..+|.+.|.|+++...+... .+.. ....|+++.|+- ++. ..+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56678999999997 6669999999999999999877655432 2222 234688898872 222 24788
Q ss_pred EEcCCCcEEEEECCC---CeEE----EEecCCCCCeEEEEeeccCC-------------------ccEEEEEecCCeEEE
Q 001176 469 TCGDDKMIKVWDVVA---GRKQ----YTFEGHEAPVYSVCPHHKES-------------------IQFIFSTAIDGKIKA 522 (1132)
Q Consensus 469 s~~~dg~v~vwd~~~---~~~~----~~~~~h~~~v~~i~~~~~~~-------------------~~~l~s~s~dg~i~~ 522 (1132)
.|...|.+.+|.+.- +... .....+.++|..|..-.... -.-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999997751 2221 12234667777776321111 023455566889999
Q ss_pred EEcCCCCceEEecCCCCeEEEEEEc-----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC---CceEEEEEe
Q 001176 523 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 594 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 594 (1132)
+...+.+.........-....+++. ..+..|++-. .+|.++++.+..-+.+........ ..+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776655444222233344443 2344555554 488899999998888777665321 123335567
Q ss_pred CCCCEEEEE
Q 001176 595 TTRNRFLAA 603 (1132)
Q Consensus 595 ~~~~~l~~~ 603 (1132)
++|+.++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 777655444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0096 Score=64.17 Aligned_cols=227 Identities=11% Similarity=0.042 Sum_probs=112.2
Q ss_pred EEcCCCCeEEEEeC-CC--eEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 412 VWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 412 ~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+|.+||+.|+.++. || .+.+.|+.+++..+ |..+. .......++|+++ .++-......|+-.|+++.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcEE
Confidence 57889987766654 44 57777888865443 33222 2233567788887 4544445578899999998876
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEec----------------------CCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAI----------------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
..+......+-...|..+.++..++..-. ...|..-|+.+++.... .....++..+.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v-~~~~~wlgH~~ 194 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV-FEDTDWLGHVQ 194 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE-EEESS-EEEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE-EecCccccCcc
Confidence 66666666676677766666666544321 12344446665444333 33566788899
Q ss_pred EcCCCCEEEEEecCCCC---CCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEE-----cCCeEEEEECCC
Q 001176 546 YSADGTRLFSCGTSKEG---ESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-----DEFQIKFWDMDN 616 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~---~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~ 616 (1132)
|+|....++.-+..+.- +.+|.+.+.. |...+.+..+. ...+..=.|.|||..+.--+ .+..|.-+|+.+
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 99976555443332222 2245444543 33333333222 22455567999998766532 345677888888
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
++........ .......++||++++-=+.|
T Consensus 274 ~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 274 GERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 7665444332 23456667899877654443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00068 Score=75.18 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCeeEEEEee-CCCEEEEe----e-CCe----EEEEECCCCeEEEE---eeCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 001176 837 EESAACIALSK-NDSYVMSA----S-GGK----VSLFNMMTFKVMTM---FMSPPPAATFLAFHPQDNNIIAIGMEDSSV 903 (1132)
Q Consensus 837 ~~~v~~~~~s~-dg~~la~~----s-dg~----i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~~~~~lasg~~dg~v 903 (1132)
+....++.||. +...+.+. + +|. -.+|+....+..+. --.....|.|.+++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 44557778876 34444443 2 333 56777765543222 123667899999999 88999999999999
Q ss_pred EEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcc
Q 001176 904 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 904 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~ 954 (1132)
.+||...+.. .+....-..+.++|+|+|..+++|+..|.+.+||+.-.-
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999876632 232344567899999999999999999999999997643
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00049 Score=76.29 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=90.4
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEE----cCCCc----EEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVG----TNVGD----ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g----~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
...+++..+.......++.||-...+.+.|- +.+|. -.+|++..++.... .+ .--.
T Consensus 194 ~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-sv---------------tsip 257 (545)
T PF11768_consen 194 GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SV---------------TSIP 257 (545)
T ss_pred CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EE---------------EEEe
Confidence 3445566666566678889987444344432 23443 34566654432111 10 0124
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
....|.|++++|+.+.|+.|+.||.|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeec
Confidence 6778999999999999999999999999998876322 222345678999999999 899999999999999865
Q ss_pred Ce
Q 001176 484 GR 485 (1132)
Q Consensus 484 ~~ 485 (1132)
..
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 43
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0081 Score=66.98 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=138.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce----------------------------------------eeeeee
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------------------------------------RQHLEI 446 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~l 446 (1132)
.|+++.|+++..-||+|...|.|.||.+...+.. ....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999976543111 111223
Q ss_pred ecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE--ecC------CCCCeEEEEee---ccCCc---cEEE
Q 001176 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 512 (1132)
Q Consensus 447 ~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~------h~~~v~~i~~~---~~~~~---~~l~ 512 (1132)
....++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -+++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3446899999998666 799999999999999988887765 222 23467778775 33333 5789
Q ss_pred EEecCCeEEEEEcCC-CCceE------EecCCCCeEEEEE-EcCC---------------------CCEEEEEecCCCCC
Q 001176 513 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 563 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 563 (1132)
+|...|.+.+|.+.- ..... ....+.+.|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999997752 21111 1113444554444 3221 01444554 4
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEe-----CCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC--CCCcceEE
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 636 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 636 (1132)
..++++...+.+.......... ....+.+- ..+..|++-..+|.|+++.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 4599999887776554442211 22334442 2456677788999999999999999888876421 12355677
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q 001176 637 FNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 78888866655443 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0018 Score=73.10 Aligned_cols=220 Identities=15% Similarity=0.206 Sum_probs=121.0
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
......+.++|+|++++++++|...|+.....+.... +.-...+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3456889999999999999999999999665554332 3345688988 555 55666688999974333333233
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 996 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v 996 (1132)
++.. ..+..|.. |..|...+.+ .|.+||+.+++.+. ...- .+|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 23444433 8888777655 79999999977433 2221 2368999999999999988889998
Q ss_pred EeCCCC------------ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc--eecccCCCccccccc
Q 001176 997 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR--FRCRIGPSAYIPTYA 1062 (1132)
Q Consensus 997 wd~~~~------------~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~ 1062 (1132)
++.+.. ....... ....|.+.+|..| -++.| +.. .++. +..|+ .++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~~~i~~ld--------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED-CFIYT-TSN-HLKY--LVNGETGIIAHLD--------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S---------
T ss_pred EEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCcceEEEcC---------
Confidence 887544 2222211 1457888888766 33333 323 6665 33333 222222
Q ss_pred cCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1063 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1063 ~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+.-+.+.| ..+.+.....|+.+..+.+.-.+
T Consensus 233 -----~~~yllgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 -----KPLYLLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -----S--EEEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -----CceEEEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 2344555666 45788888899999988886655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.012 Score=67.91 Aligned_cols=249 Identities=13% Similarity=0.101 Sum_probs=135.8
Q ss_pred CeeEEEEccCCCeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.+..+.+||||++++++-+..| .+++.|+.+|+.+.. .+ . ...-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~--~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------E--NPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------E--EEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------c--ccccceEEEeCCCCEE
Confidence 3446789999997665544444 599999999976542 11 0 1112239999999877
Q ss_pred EEEeCCC-----------eEEEEEecCCCceeeeeeeecccCC--EEEEEEecCCCcEEEEEEcC-C-CcEEEEECCCC-
Q 001176 421 GVAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGD-D-KMIKVWDVVAG- 484 (1132)
Q Consensus 421 as~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--v~~v~~s~d~~~~~l~s~~~-d-g~v~vwd~~~~- 484 (1132)
+....+. .|+.|.+.+...-. ...+...... ...+..++|++.++|.+.+. + ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 6654332 37777777654321 1133333332 56888999999633323322 2 35788888775
Q ss_pred ---eEEEEecCCCCCe-EEEEeeccCCccEEEEE---ecCCeEEEEEcCCCCc---eEEecCCCC--eEEEEEEcCCCCE
Q 001176 485 ---RKQYTFEGHEAPV-YSVCPHHKESIQFIFST---AIDGKIKAWLYDYLGS---RVDYDAPGN--WCTMMAYSADGTR 552 (1132)
Q Consensus 485 ---~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~ 552 (1132)
.....+......+ ..+... ++ .+++.. ...+.|...++..... ...+..+.. .+..+. ..+++
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~ 338 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDY 338 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCE
Confidence 2233333333333 333332 22 344333 2345677777777663 224444444 344444 44556
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE--EE--cCCeEEEEECCCCeeE
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 620 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 620 (1132)
|+.... .++...|+++++..+...........+.+..+...++++.+.. .| .-+.++.||+.+++..
T Consensus 339 Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 339 LVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 665443 2456789999998455555555444435666665566655443 22 4467888898887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=52.97 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHcCCC
Q 001176 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1132)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1132)
.++++.++|+|||.+.||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0078 Score=70.40 Aligned_cols=276 Identities=10% Similarity=0.068 Sum_probs=154.7
Q ss_pred EEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE--EEEEcCCCCeEEEEeCCCeEEEEEecC
Q 001176 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN--RCVWGPDGLMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 359 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~v~~spdg~~las~~~dg~i~iwd~~~ 436 (1132)
+..++.++.|.-.|..+|+.+ |......... .+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~-------W~~~~~~~~~------~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVL-------WRYDPKLPAD------RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhh-------ceeCCCCCcc------ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 555677899999999999765 3221110000 0000010 01111 236777888999999999999
Q ss_pred CCceeeeeeeeccc---CCE-EEEEEecCCCcEEEEEEc---------CCCcEEEEECCCCeEEEEecCCCCC-------
Q 001176 437 TGELRQHLEIDAHV---GGV-NDIAFAHPNKQLCIVTCG---------DDKMIKVWDVVAGRKQYTFEGHEAP------- 496 (1132)
Q Consensus 437 ~~~~~~~~~l~~h~---~~v-~~v~~s~d~~~~~l~s~~---------~dg~v~vwd~~~~~~~~~~~~h~~~------- 496 (1132)
|+.+-... +..+. ..+ ....+. + . +++.++ .++.|...|..+|+.+.++......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 88654321 11110 001 111222 2 2 344443 4688999999999988776532110
Q ss_pred -------------eE-EEEeeccCCccEEEEEecCC------------------eEEEEEcCCCCceEEecCCCCeEE--
Q 001176 497 -------------VY-SVCPHHKESIQFIFSTAIDG------------------KIKAWLYDYLGSRVDYDAPGNWCT-- 542 (1132)
Q Consensus 497 -------------v~-~i~~~~~~~~~~l~s~s~dg------------------~i~~wd~~~~~~~~~~~~~~~~v~-- 542 (1132)
+. +.++.+ .+..++.++.++ .|.-.|..+++.+...........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 11 112221 235677776655 788889998888876543221110
Q ss_pred ----EEEE----cCCCC---EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE--------
Q 001176 543 ----MMAY----SADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-------- 603 (1132)
Q Consensus 543 ----~~~~----s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------- 603 (1132)
...+ .-+|. .++.++ .++.++..|.++|+.+........ .++.+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~----~~G~l~ald~~tG~~~W~~~~~~~----~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAP----KNGFFYVLDRTTGKLISARPEVEQ----PMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEEC----CCceEEEEECCCCcEeeEeEeecc----ccccCC--ceEEEccccccccC
Confidence 0011 12333 344543 377899999999998876643211 123333 233332
Q ss_pred ----------EcCCeEEEEECCCCeeEEEEeCCCCC------CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceee
Q 001176 604 ----------GDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 665 (1132)
Q Consensus 604 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1132)
..+|.+.-.|..+|+.+-........ .....-.....+..|++++.||.|+.+|..+|+.+.
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 24678999999999988776643110 011111111246788999999999999999994433
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.4e-05 Score=62.02 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.9
Q ss_pred HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCCH
Q 001176 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1132)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1132)
+..++++|+.|+|+.|+..+..........-+ .+.|.|++|+|+||+..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 57899999999999999999888554333323 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=73.65 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=111.4
Q ss_pred CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe---CC-CcEEEEEcccceeeeeeccccCCeeEEEEcCCC
Q 001176 858 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---ED-SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 933 (1132)
Q Consensus 858 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 933 (1132)
..+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++|+.+++....+. ..+.-...+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence 345555655 555555555556677788999 666655442 22 359999999886544433 22223357899999
Q ss_pred CEEEEE-cCCCc--EEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC--C--eEEEEeCCCCceee
Q 001176 934 NALVSS-GADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECSRS 1006 (1132)
Q Consensus 934 ~~l~s~-~~D~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~--~v~vwd~~~~~~~~ 1006 (1132)
+.|+-+ ..|+. |.+.|+.++... .+....+.. ..-.|+|||++++..+| | .|.+++..+.....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGIN------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcce---ecccCCccc------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 887754 45665 555566665521 133333322 36789999999999543 3 37777776665544
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecC-Cc--EEEEeCCCcceeccc
Q 001176 1007 WSPKDALPAPISSAIYSCDGLLVYAGFCD-GA--IGVFDAETLRFRCRI 1052 (1132)
Q Consensus 1007 ~~~~~~h~~~i~~i~~s~dg~~las~~~d-g~--i~vwd~~~~~~~~~~ 1052 (1132)
+.... ..-..-.+||||++++..+.. |. |.+.|+.++.....+
T Consensus 321 iT~~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 321 LTFSG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred eeccC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 43322 222277899999999877643 44 777777776643333
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.01 Score=61.12 Aligned_cols=191 Identities=10% Similarity=0.125 Sum_probs=110.3
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...+.+++|.|+.+.|+|+....+.|...+.+ |+.+.+.. +.+ .+..-.|++.-++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988789999999999888864 66554311 233 346778999888888887
Q ss_pred EeCCCeEEEEEecCCCc-e--ee--eeeee---cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeEEEE--
Q 001176 423 AFSKHIVHLYTYNPTGE-L--RQ--HLEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 489 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~-~--~~--~~~l~---~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---~~~~~~-- 489 (1132)
.-.++.+.++++..... + .. ...+. .+...+-.++|++.++. |+.+-......++.+.. ...+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76789999999854321 1 11 11111 24557899999999884 44455555556665543 221111
Q ss_pred e------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CeEEEEEEcCCCCEEE
Q 001176 490 F------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 554 (1132)
Q Consensus 490 ~------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 554 (1132)
. ......+.+++++|.. +++++....+..|..+| ..++.+..+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1234567889998864 47888888889999998 4444444333332 2577899999997776
Q ss_pred EE
Q 001176 555 SC 556 (1132)
Q Consensus 555 ~~ 556 (1132)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0036 Score=70.73 Aligned_cols=224 Identities=10% Similarity=0.063 Sum_probs=119.2
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
........+.++|+|+.++++ .||.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 344567899999999999994 6788888883332 11 1123456788988654 6777768899997422
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
+.+....++- ...+..|.. |.+|...+. +.|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3222223321 123444432 355555544 48999999998888877754 489999999999999886
Q ss_pred CCeEEEEeCCCC-----------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 563 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 563 ~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
+..+++++.... .....+... ...|.+.+|..+ .++-.... .++.+--.....+..+. .+
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld-----~~ 234 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLD-----KP 234 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-S-----S-
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcC-----Cc
Confidence 334777765433 012222211 226888888865 44444444 77663222222333332 25
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+.-+...++.+.++....|+.+..+.+...
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 677778887788999999999998877644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0056 Score=63.03 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=112.7
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCC-CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 912 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~- 912 (1132)
...+..++|.|+.+.|++.. .+.|.-++. +|+.++.+.-. .+..-.|++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 44699999999877555554 578888887 47887776543 35678899987 77777766668999999984321
Q ss_pred -----eeeee-----ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC---cccccceeeeCCCCCCCCCCCceeEEE
Q 001176 913 -----VKTKL-----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 913 -----~~~~l-----~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
....+ ..++..+-.|+|.|.++.|+.+-...-..+|.+.. .....................+..+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11111 13556689999999988888777776677777754 111111111111101111245788999
Q ss_pred CCCCcEEEE-E-eCCeEEEEeCCCCceeecCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 980 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 980 s~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
+|....|.+ + .+..+..+|.+++....+....+. -..--.|+|.++|++ +..++-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 998666555 5 456788888877765544332211 235678999999964 455677766655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.016 Score=65.73 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=108.1
Q ss_pred EEEeeCCCEEEEeeCC------------eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 843 IALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
++.+|.|..+|...|. .|+||+.. |+++..+.-..+.|.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4555666666655433 59999975 566666544448999999987 54 555677999999999863
Q ss_pred ce------eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC---CCCCcee-EEEC
Q 001176 911 DE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS---PLVGETK-VQFH 980 (1132)
Q Consensus 911 ~~------~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~-~~~s 980 (1132)
.. .+....-....+....+...|-.+.+ .++.+.+-+--.... .........+... ....... ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEee
Confidence 22 11111112223333344445533333 344443332211110 0001111111000 0001111 2345
Q ss_pred CCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 981 NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 981 ~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
.+....+. ..++.+.+.+. ..+. .. ..+++..|++||+|++||.-..+|.+.|.+.+-.+.+..+.
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 55544444 45566664443 2111 11 14689999999999999999999999999887776666655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0019 Score=72.63 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=114.5
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCC---CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+...+.+. ....+..-+|+|+++.+....-.. ..+.++++.+++..... .-.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------NFNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------ccCCccC
Confidence 44555555 567888899999999755543222 35999999988754321 1233344
Q ss_pred EEEEcCCCCeEEEE-eCCCe--EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--EEEEECCCC
Q 001176 410 RCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAG 484 (1132)
Q Consensus 410 ~v~~spdg~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~--v~vwd~~~~ 484 (1132)
.-+|||||++||.+ ..||. |.+.|+.++...+ +..-.+.-+.-.|+|||+. ++++.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 57899999988766 44665 5666776655222 3333333347789999996 3444555554 555565554
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.. ..+....+.-..-.|+| ||.+++..+. +|. |.+.|+.++.. ..............+.++|+.++..+.
T Consensus 317 ~~-~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QV-TRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ce-eEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 43 33322222222444555 5567766664 344 56666655554 222223333445677888888876653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.18 Score=59.23 Aligned_cols=196 Identities=13% Similarity=0.047 Sum_probs=114.8
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc--CCE-------EEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV--GGV-------NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~--~~v-------~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+..|.+++.++.|.-.|..+|+.+-... ..... ..+ ..+++. +. .++.++.|+.|.-.|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECCCCCEE
Confidence 4466666677888888888887654321 11100 010 112222 23 4667888999999999999998
Q ss_pred EEecC--CCC--CeEEEEeeccCCccEEEEEe------cCCeEEEEEcCCCCceEEecCCCC------------------
Q 001176 488 YTFEG--HEA--PVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGN------------------ 539 (1132)
Q Consensus 488 ~~~~~--h~~--~v~~i~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~------------------ 539 (1132)
..... +.. .+.+--.. . + ..++.+. .+|.|.-+|.++++.+..+..-..
T Consensus 144 W~~~~~~~~~~~~~tssP~v-~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLV-V-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred eecccccccccccccCCcEE-E-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 76542 111 11111000 1 2 3445443 268899999988877664332110
Q ss_pred -------------eE-EEEEEcCCCCEEEEEecC--------CCCC----CeEEEEeCCCCceeeeeccccCC-------
Q 001176 540 -------------WC-TMMAYSADGTRLFSCGTS--------KEGE----SHLVEWNESEGAIKRTYSGFRKR------- 586 (1132)
Q Consensus 540 -------------~v-~~~~~s~~~~~l~~~~~~--------~~~~----~~i~~wd~~~~~~~~~~~~~~~~------- 586 (1132)
.+ ..+++.+...+++.+..+ +.++ ..|.-.|+++|+....++.....
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 11 134666666666665521 1122 26888999999998887653220
Q ss_pred -ceEEEEEeCCCC---EEEEEEcCCeEEEEECCCCeeE
Q 001176 587 -SLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 587 -~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
...-+.+..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111133334665 6677889999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.11 Score=58.60 Aligned_cols=270 Identities=13% Similarity=0.133 Sum_probs=170.1
Q ss_pred CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 330 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 330 d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+..+......+.-......+.+.|+|..+.++-.....+..-+......... ...-...-.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~ 77 (381)
T COG3391 17 NTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPA 77 (381)
T ss_pred eecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCcccc
Confidence 3344444555554447788889999865555543333444444331111000 000113455
Q ss_pred EEEEcCCCCeEEE-EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeEE
Q 001176 410 RCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 410 ~v~~spdg~~las-~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~~~~~ 487 (1132)
.+++++++..+.. ...+..|.+.|..+........ .+. .-..++++|+++.++++-.. .++++.+.|..+++.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 7889998885544 4456889999977766554321 122 56789999999863333333 3789999999999988
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-E---ecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.+...-..+ ..+++.|.+. ..+++-..++.|.+.|........ . ..........+.++++|+++...... +.+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~ 230 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGS 230 (381)
T ss_pred EEEecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCC
Confidence 876544445 7788877552 244555689999999966544332 0 11122344678899999977766531 124
Q ss_pred CeEEEEeCCCCceeee-eccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCC
Q 001176 564 SHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
+.+...|..++..... ...... ....+.++|+|..+++.. ..+.+.+.|..+..........
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 6899999988877665 332222 345588999999988874 4588999999888877766543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=3.2e-05 Score=85.03 Aligned_cols=205 Identities=15% Similarity=0.206 Sum_probs=132.2
Q ss_pred CCCCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCe
Q 001176 342 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 419 (1132)
....+.|++++-+.+ .++++|..+|.|-+-.+....-- ......+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 345677887776544 58999999999999887654321 0112557888999999999 7778
Q ss_pred EEEEe----CCCeEEEEEecCCCc-eeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecC
Q 001176 420 LGVAF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEG 492 (1132)
Q Consensus 420 las~~----~dg~i~iwd~~~~~~-~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~ 492 (1132)
||+|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|...+.+.++|++.... ...+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88873 356799999988611 111111222 334566899998877 889999999999999873321 1111
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEE-cCCCCceEEecCC-----CCeEEEEEEcCCCCE-EEEEecCCCCCCe
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-----GNWCTMMAYSADGTR-LFSCGTSKEGESH 565 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~-l~~~~~~~~~~~~ 565 (1132)
....+..+.+.|-. ++++++-. ||.|-+|| ...-+.......+ ...+..++|.|...- ++++.. ..++
T Consensus 194 nTk~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 23345556665532 25666555 99999999 4433332221111 225889999996543 444443 3678
Q ss_pred EEEEeCC
Q 001176 566 LVEWNES 572 (1132)
Q Consensus 566 i~~wd~~ 572 (1132)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.031 Score=62.99 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=139.6
Q ss_pred eeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeC---CCcEEEEEcccceee
Q 001176 840 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVK 914 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~~ 914 (1132)
-..+++++++..+.+.. ++.|.+.|..+.+......--. ....++++| ++..+.++.. ++.+.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45688889998666655 6899999988777766654222 667899999 5555444443 689999999988888
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC--
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-- 991 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-- 991 (1132)
.....-..+ ..++++|+|..+..+ ..++.|.+.|..+..... .. .............++++|+|.++.+..+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775433344 889999999955544 578999999977654321 00 0000111134578999999998887432
Q ss_pred --CeEEEEeCCCCceeec-CCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcceecccC
Q 001176 992 --SQISVYDSKLECSRSW-SPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 992 --~~v~vwd~~~~~~~~~-~~~~~h~~~i~~i~~s~dg~~las~~~-dg~i~vwd~~~~~~~~~~~ 1053 (1132)
+.+...|......... .... -. .-..+.++|+|+.+.+... .+.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 4788888844443333 2211 02 4556889999999888744 4889999999887776554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.03 Score=56.28 Aligned_cols=235 Identities=15% Similarity=0.093 Sum_probs=137.5
Q ss_pred eEEEEeeCCC-EEEEee-CCe-EEEEECCCCeEEEEeeCCCCC--eEEEEEeCCCCCeEEEEeCC-----CcEEEEEccc
Q 001176 841 ACIALSKNDS-YVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRV 910 (1132)
Q Consensus 841 ~~~~~s~dg~-~la~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~ 910 (1132)
..++++|.-. -++.+- -|+ ..++|..+.+...++...++. --.=.||| +|.+|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 3577777544 444444 455 778999888776666543332 12347999 88888765433 6899999875
Q ss_pred c-eeeeeeccccCCeeEEEEcCCCCEEEEEcC------C------------CcEEEEECCCcccccceeeeCCCCCCCCC
Q 001176 911 D-EVKTKLKGHQNRITGLAFSPTLNALVSSGA------D------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPL 971 (1132)
Q Consensus 911 ~-~~~~~l~~h~~~V~~l~~spdg~~l~s~~~------D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 971 (1132)
+ +.+..+..|.-.--.+.|.+||++++.+.. | -.+.+.|..+++.+.+..+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence 4 566778888888888999999999987653 1 1344555455554443333211111
Q ss_pred CCceeEEECCCCcEEEEEe-CC-----eEEEEeC-CCCceeecCCCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001176 972 VGETKVQFHNDQTHLLVVH-ES-----QISVYDS-KLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF-CDGAIG 1039 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~~-d~-----~v~vwd~-~~~~~~~~~~~~----~h~~~i~~i~~s~dg~~las~~-~dg~i~ 1039 (1132)
..+..++..+||+.++.+. .| --.|=-. .++.+..+.... .....|-+++..-+..+++..+ ..+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 4577888888888776641 11 0111111 222222221110 0134577888876655555444 455678
Q ss_pred EEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1040 VFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1040 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
+||..+|..+..-.... ...++ + ...=++..+.+|.+.++.
T Consensus 306 i~da~tG~vv~~a~l~d-------------aaGva--~-~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGAVVSEAALPD-------------AAGVA--A-AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCcEEecccccc-------------cccce--e-ccCceEEecCCceEEecc
Confidence 89999999875543211 11111 1 223355566788888773
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.13 Score=58.47 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=113.4
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCcee---eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
+.|.++.|+.+.+++ +-..||.+++||+.+..... ......-....+.+..+..+|- .+.+ .++.+.+-+-.
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEEC--CCCeEEEEeCc
Confidence 789999999865555 55699999999987433000 0000011112233333433442 3333 34444443322
Q ss_pred CCe-EEEEe---cC-----CCC-CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 483 AGR-KQYTF---EG-----HEA-PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 483 ~~~-~~~~~---~~-----h~~-~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
... ..+.+ .+ +.. ....+ .....+....+....++.+.+-+-..... ....+++..++.||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211 11111 11 000 01111 11122334455555556666443322111 112468999999999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
++.-.. ++.+.+.+..-.+....+..........+.|..+ |..+..|. ..+..+...+
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~---------dav~l~~~----~~l~lvg~~~----- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN---------DAVVLSWE----DELLLVGPDG----- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECC---------CcEEEEeC----CEEEEECCCC-----
Confidence 988764 6778888876666666665543334555666544 33333341 1122221111
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (1132)
..+.|.-++..++..-.|| +||+.-... +.++.+...
T Consensus 289 ~~~~~~~~~~~~l~~E~DG-~riit~~~~-~~l~~Vp~~ 325 (410)
T PF04841_consen 289 DSISFWYDGPVILVSEIDG-VRIITSTSH-EFLQRVPDS 325 (410)
T ss_pred CceEEeccCceEEeccCCc-eEEEeCCce-EEEEECCHH
Confidence 2245545555555555564 788765444 444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.13 Score=55.49 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=132.2
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-----
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF----- 490 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----- 490 (1132)
.++.|+.|+.+| +.+++.......... .+...|..+...++-+ .++.-+ |+.++++++..-.....-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhccccccccccc
Confidence 678899999999 999999333322211 1233499999999887 444443 599999998764433311
Q ss_pred ---------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 491 ---------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 491 ---------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
......+...+......+...+.....+.|.+|.+... .....+.. ...+..++|. ++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence 11223344444112223345555666669998887663 22233333 3567888888 5566666
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeecccc-----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE--EE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFR-----------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TV 623 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 623 (1132)
. .....+.|+.++.....+.... ..++..+.. +++.+|++- +..-.+.|.. |+... .+
T Consensus 155 ~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i 225 (275)
T PF00780_consen 155 T-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTI 225 (275)
T ss_pred e-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEE
Confidence 5 3348889998776544432111 112333333 334555543 3333444443 33332 33
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccc
Q 001176 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 672 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (1132)
.... ...++++. ..+|+..+. +.|.+|++.++ ++.+.+....
T Consensus 226 ~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 226 QWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence 3322 34556663 457776655 56999999999 7777776543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0066 Score=71.47 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=109.0
Q ss_pred CCeeEEEEeeCCCEEEEee-------CC--eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC--------
Q 001176 838 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 900 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-------- 900 (1132)
..+.+.++||||+.+|... |+ .|.+++.. +.. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887664 32 46666653 222 33321 23478899999 77766665422
Q ss_pred ----CcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEE---EECCCcccccceeeeCCCCCCCCCCC
Q 001176 901 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 973 (1132)
Q Consensus 901 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1132)
+.+.+.++..++... ...+.|..+.|||||..++... ++.|++ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2356799999999999888766 467776 444444311111111111111 23
Q ss_pred ceeEEECCCCcEEEEEeCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 974 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 974 v~~~~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
+..+.|..++.+++...++...+|.+ .+.....+ .......++.+++-+++ -++....+|.+.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 57889999999765544444445554 55443332 22233667888887763 3555566664443
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00028 Score=65.28 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=69.8
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+++.+.||||+.+|..++|..|+++.-..+...+.+++++|+.+..+.++.+++....++. ++.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 5555 9999999999999999999999999998877776678899999999999999998887776655 4566
Q ss_pred HHHHHHHHHh
Q 001176 140 RNIMLVELKK 149 (1132)
Q Consensus 140 r~~l~~~l~~ 149 (1132)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 6777777776
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00021 Score=78.78 Aligned_cols=248 Identities=14% Similarity=0.145 Sum_probs=148.8
Q ss_pred CCCeeEEEEeeCCC--EEEEee-CCeEEEEECCCCeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEe----CCCcEEEEE
Q 001176 837 EESAACIALSKNDS--YVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM----EDSSVQIYN 907 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~--~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~----~dg~v~iwd 907 (1132)
...+.|++...+.. .+++|. +|.|.+-......- .....++....++++|.+-|..+||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 33456666555443 566776 89888877654322 2344567778999999997778888773 456799999
Q ss_pred cccc--eee--eeecc-ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC-
Q 001176 908 VRVD--EVK--TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN- 981 (1132)
Q Consensus 908 ~~~~--~~~--~~l~~-h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 981 (1132)
+.++ .+. ..+.+ ......+++|-.+.+++.+|.....+.++|+......... ... ..+..+..+|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnT-----k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNT-----KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhh-----hhcccceecCC
Confidence 9876 111 12222 3345668899888899999999999999999743221111 111 1345677888
Q ss_pred CCcEEEEEeCCeEEEEeC--CCCc-eeecCCC-CCCCCCeEEEEEccCC-CEEEEEe-cCCcEEEEeCCCccee------
Q 001176 982 DQTHLLVVHESQISVYDS--KLEC-SRSWSPK-DALPAPISSAIYSCDG-LLVYAGF-CDGAIGVFDAETLRFR------ 1049 (1132)
Q Consensus 982 dg~~l~~~~d~~v~vwd~--~~~~-~~~~~~~-~~h~~~i~~i~~s~dg-~~las~~-~dg~i~vwd~~~~~~~------ 1049 (1132)
.+.+++...|+.|.+||. +.+. +...... ..-...+..++|+|-. .+|++.. ..++|+.+|+..-..-
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 788888888999999995 2222 2221111 1112358999999852 2444444 4578999987531110
Q ss_pred c-ccCCCccccccccCCCC--CCcEEEEeCCCC-CCeEEEEeCCCcEEEEec
Q 001176 1050 C-RIGPSAYIPTYAVSSNT--AHPLVIAPHPSE-PNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1050 ~-~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~-~~~l~s~~~Dg~i~vW~~ 1097 (1132)
. ......| | ++..+ ..+-+..|++.+ -+..+.+-..-.+..+++
T Consensus 287 ~~~~~~s~~-~---~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 287 VFVNYESKY-P---VQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred ceeeecccc-c---ccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 0 1111111 1 11222 566778888755 234444544555554444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.18 Score=58.04 Aligned_cols=245 Identities=10% Similarity=0.089 Sum_probs=127.8
Q ss_pred CeEEEEEcCCCCeEEEE-eCC----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC---------
Q 001176 407 SVNRCVWGPDGLMLGVA-FSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------- 472 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~-~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--------- 472 (1132)
.+..+++||||+++|.+ +.. ..++++|+++++.+... +..- ....+.|.+|++. ++++...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44468899999999876 333 35999999998655421 2211 1223999999985 3444422
Q ss_pred -CCcEEEEECCCCeEE--EEecCCCCC--eEEEEeeccCCccEEEEEecC----CeEEEEEcCCC----CceEEecCC-C
Q 001176 473 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYL----GSRVDYDAP-G 538 (1132)
Q Consensus 473 -dg~v~vwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~----~~~~~~~~~-~ 538 (1132)
...|+.|.+.++... ..+...... ...+..+. ++.+++..+.. ..+.+.|+... .....+... .
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 234788888776432 444444433 34555544 55666544332 34666777664 223333333 3
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccCCceEEEEEeCCCCEEEEEE-cC--CeEEEE
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DE--FQIKFW 612 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d--g~i~iw 612 (1132)
+....+... .+.+++. +..+-..+.|...++..... ...+..+.. .+.-..+...+++|+... .+ ..|+++
T Consensus 278 ~~~~~v~~~-~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE-TTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 3333333 32333467788888876652 223333333 222233334455565543 44 358899
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCcc
Q 001176 613 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 662 (1132)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1132)
++..+.....+..... +.|..+...++++.+..... -+++..||+.+++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9984555555554432 24555555565554433322 3578888888873
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.036 Score=65.39 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=110.3
Q ss_pred CCCCeEEEEEeCCCCCeEEEEe------CCC--cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC-CcEEE
Q 001176 877 PPPAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCM 947 (1132)
Q Consensus 877 ~~~~i~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D-~~i~i 947 (1132)
....+...+++| +|+.+|... .|+ .|.+++. .+.......+ ...+.-.|+|||+.|++.... ..+++
T Consensus 348 ~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 334678999999 777776654 244 4555554 2333222333 247889999999988877533 22222
Q ss_pred E-----------ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC---CCCceee--cC-CC
Q 001176 948 W-----------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRS--WS-PK 1010 (1132)
Q Consensus 948 w-----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~---~~~~~~~--~~-~~ 1010 (1132)
. +++.++... . ....|..+.|||||++++...++.|.+--+ ....... .. ..
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~-----~------~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS-----R------VPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred eccCCCceEEEEeccCchhhh-----c------cCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEee
Confidence 2 333322100 0 114689999999999999966788877433 2222111 00 11
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-cceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC
Q 001176 1011 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD 1089 (1132)
Q Consensus 1011 ~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D 1089 (1132)
.+....+.++.|..++.++ ++..++...+|.+.- |.....+. . ......+.+++-++ ..|+.+..+
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~------~---~n~~~~v~~vaa~~---~~iyv~~~~ 559 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP------S---RNLSAPVVAVAASP---STVYVTDAR 559 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccC------C---CCccCceEEEecCC---ceEEEEcCC
Confidence 1223456889999999855 555555555555432 22211111 0 11235566777665 346666667
Q ss_pred CcEEEEecCCCcccccC
Q 001176 1090 GAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1090 g~i~vW~~~~~~~~~~~ 1106 (1132)
+.+.+=.-.+++..|..
T Consensus 560 g~~~l~~~~~~~~~W~e 576 (591)
T PRK13616 560 AVLQLPNSDSGDQYWRE 576 (591)
T ss_pred ceEEecCCCCCCCCceE
Confidence 74443322333456654
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=68.28 Aligned_cols=115 Identities=10% Similarity=0.140 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc----------HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFF 74 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1132)
.+.|..+|..++...|+.+.+..|-+|+|...+ +.++-+++..|+-.-|++.+..-...-... ...+.|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHH
Confidence 344689999999999999999999999998753 678888999999999988887754332222 334889
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001176 75 EIRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLLT 120 (1132)
Q Consensus 75 ~i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~l~~ 120 (1132)
.+..+.|++++..|... +|+...|+.++|+...+..+.+.+-.++.
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~ 242 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLL 242 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 99999999999999988 99999999999997777777777666554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.18 Score=54.38 Aligned_cols=229 Identities=14% Similarity=0.083 Sum_probs=128.0
Q ss_pred CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001176 354 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 433 (1132)
Q Consensus 354 dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd 433 (1132)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 344 578888888 89999832221110 01333499999999877776664 59999999
Q ss_pred ecCCCceeeee-----------eeecccCCEEEEE--EecCCCcEEEEEEcCCCcEEEEECCCC-----eEEEEecCCCC
Q 001176 434 YNPTGELRQHL-----------EIDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 495 (1132)
Q Consensus 434 ~~~~~~~~~~~-----------~l~~h~~~v~~v~--~s~d~~~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~h~~ 495 (1132)
+..-....... ........+...+ -...+.. .++.+- .+.|.+|.+... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cCC
Confidence 87643322100 0011223344444 1123332 444443 558888877653 3445554 457
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------------CeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.+.+++|.. +.++.|..+ ...+.|+.++.......... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788898873 466666644 47778888655544332111 12333333 445566543 2
Q ss_pred CeEEEEeCCCCceee--eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 564 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
..-.+.|. .|+..+ .+.-.. .+..+++. ..++++.+. +.|.||++.+++.++.+...
T Consensus 208 ~~g~fv~~-~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVNK-NGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEcC-CCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 22233333 454433 222111 34455554 457777665 55999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.099 Score=52.76 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=67.4
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC-ceEEEEEeCCCCEEEEEE-----cCCeEEEEECC
Q 001176 542 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAG-----DEFQIKFWDMD 615 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~ 615 (1132)
..++++|....-+.-.. .......++|....+...++....+. -.-.-.|+|||.+|++.- .-|.|-|||.+
T Consensus 71 Hgi~~~p~~~ravafAR--rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFAR--RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEe--cCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 35677776554333221 12334778898887766655433321 233356999999998864 33789999987
Q ss_pred CC-eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001176 616 NM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 616 ~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1132)
.+ +.+..+..++- .-..+.+.+||+.++.+. |-|..
T Consensus 149 ~~fqrvgE~~t~Gi--GpHev~lm~DGrtlvvan--GGIet 185 (366)
T COG3490 149 EGFQRVGEFSTHGI--GPHEVTLMADGRTLVVAN--GGIET 185 (366)
T ss_pred cccceecccccCCc--CcceeEEecCCcEEEEeC--Cceec
Confidence 43 34455555432 346789999999988764 34443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.019 Score=68.53 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=101.4
Q ss_pred CCCeEEEE-eCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCC-------CEEEEEcCCCcEEEEECCCccccccee
Q 001176 890 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTL-------NALVSSGADAQLCMWSIDKWEKLKSRF 960 (1132)
Q Consensus 890 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~l~s~~~D~~i~iwd~~~~~~~~~~~ 960 (1132)
+.++|+.- .....|+-.|+..|+.+..+..|... |..++ |+. ...+.|-.+..+..||..-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 45555543 34578999999999999999888764 55544 432 234556678889999997532 111
Q ss_pred eeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 961 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
+.............++++-+.+|..++.+.+|.|++||-.+...++..+ +...+|..|..+.||++|++.+ +..+.+
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 1111101111245678888888877777899999999985555555444 3479999999999999988665 778888
Q ss_pred EeCC
Q 001176 1041 FDAE 1044 (1132)
Q Consensus 1041 wd~~ 1044 (1132)
++..
T Consensus 644 i~t~ 647 (794)
T PF08553_consen 644 IDTL 647 (794)
T ss_pred EEEe
Confidence 8863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.058 Score=59.57 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCeEEEEeC----------CCeEEEEEecCC----CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 417 GLMLGVAFS----------KHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 417 g~~las~~~----------dg~i~iwd~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
..+|++|+. .|.|.++++... ..++.... ....++|++++-- ++. ++++. .+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEcc
Confidence 467887743 289999999984 23433322 2357889998876 333 33333 4789999998
Q ss_pred CCe-EEEE-ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eE--EecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 483 AGR-KQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 483 ~~~-~~~~-~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
..+ .... +......+.++... + ++++.|.....+.++.++.... .. ........++++.+-++++.++.+
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~--~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~- 190 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVF--K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG- 190 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEE--T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-
T ss_pred CcccchhhheecceEEEEEEecc--c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-
Confidence 877 4332 22233356666553 3 6899999999988886665333 22 223345578999998777766665
Q ss_pred cCCCCCCeEEEEeCC
Q 001176 558 TSKEGESHLVEWNES 572 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~ 572 (1132)
|.++.+.++...
T Consensus 191 ---D~~gnl~~l~~~ 202 (321)
T PF03178_consen 191 ---DKDGNLFVLRYN 202 (321)
T ss_dssp ---ETTSEEEEEEE-
T ss_pred ---cCCCeEEEEEEC
Confidence 347778887765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.19 E-value=1 Score=54.94 Aligned_cols=199 Identities=13% Similarity=0.140 Sum_probs=115.2
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCC--------eEEEEeec--------------cCCccEEEEEecCCeEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 523 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~--------v~~i~~~~--------------~~~~~~l~s~s~dg~i~~w 523 (1132)
.++.++.++.|.-.|..+|+.+-++...... ...+.+.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777788888888888877665432110 11222221 1123578888999999999
Q ss_pred EcCCCCceEEecCCCCe------------EEEEEEcC--CCCEEEEEecCCC------CCCeEEEEeCCCCceeeeeccc
Q 001176 524 LYDYLGSRVDYDAPGNW------------CTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 524 d~~~~~~~~~~~~~~~~------------v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
|.++++....+...+.. ...+.-+| .+..+++++...| ..+.|+-+|.++|+++..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99988877654321110 00111122 1345555543222 2688999999999988776521
Q ss_pred c----------------CCc-eEEEEEeCCCCEEEEEE------------------cCCeEEEEECCCCeeEEEEeCCCC
Q 001176 584 R----------------KRS-LGVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 584 ~----------------~~~-v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
. ... -...+++++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 001 12345555555544421 134566778888888776654211
Q ss_pred -------CCCcceEEEcC-CCC---EEEEEeCCCcEEEEEcCCccee
Q 001176 629 -------LPASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 629 -------~~~v~~~~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.....-+.+.. +|+ .++.++.+|.+.++|-.+|+.+
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 00111122322 553 7889999999999999999433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.17 Score=54.31 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=126.3
Q ss_pred EEcCCCCeEE-EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~spdg~~la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
.|.++...|+ +--..+.|+-|+..+++.. .+. +.+.+.++..-..+. .|+++.. -+.+++.+++..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----~~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR----VFP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE----EEE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeEEe
Confidence 4667766444 4445778999998876432 122 333445555544444 4665543 4667777666553332
Q ss_pred cC----C-CCCeEEEEeeccCCccEEEEEec---------CCeEEEEEcC-CCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 491 EG----H-EAPVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 491 ~~----h-~~~v~~i~~~~~~~~~~l~s~s~---------dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
.. . ....+.+...|+ |.+.++... -..-.+|.++ .+........+-..-+.++||||++.|+.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 21 1 133445555554 344443333 0112455555 33344444443455678999999998887
Q ss_pred EecCCCCCCeEEEEeCCC--C----ceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeeEEEEeCCCC
Q 001176 556 CGTSKEGESHLVEWNESE--G----AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
+-. ..+.|+.|++.. + +....+.....+..-.++...+|.+.+++..+| .|.+|+.. ++++..+..+..
T Consensus 180 aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 180 ADT---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EeC---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 742 356788887652 1 111112212223455677888888776544443 99999998 999999887743
Q ss_pred CCCcceEEEcC-CCCEEEEEeC
Q 001176 629 LPASPRLRFNK-EGSLLAVTTS 649 (1132)
Q Consensus 629 ~~~v~~~~~s~-~~~~l~~~~~ 649 (1132)
.+.+++|-- +.+.|++.+.
T Consensus 256 --~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 256 --RPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred --CCccceEeCCCcCEEEEEec
Confidence 577788754 5565555544
|
|
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00042 Score=64.91 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+++.|.||+|+..|+.++|..||++.-..+...+.+++++|..+....++.+++....++. ++.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4555 9999999999999999999999999998888887778889999998888887776666655544 3555
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS 178 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~ 178 (1132)
-..|+..|++.=. .-.+-|..+|++.
T Consensus 115 ~~lL~~fL~~~~~-------------~g~~~ll~iin~~ 140 (142)
T PF04494_consen 115 FSLLLQFLQENEN-------------SGGSVLLRIINQH 140 (142)
T ss_dssp HHHHHHHHHHTTC-------------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-------------chHHHHHHHHHHH
Confidence 5666666665221 1123677777764
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.16 Score=56.53 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=61.2
Q ss_pred CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-----------------CEE
Q 001176 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRF 600 (1132)
Q Consensus 538 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l 600 (1132)
...+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3467899999998877664 5688999999999999999999876433322222111 122
Q ss_pred E-EEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 601 L-AAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 601 ~-~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
+ -+-.-|.|.||.++.|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 2557899999999999888777643
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.18 Score=54.08 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=135.4
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
+-.|.|+...++.+--..+.|.-|+..+++... | .+.+.+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~---------------~~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV------F---------------PSPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE------E---------------ECCCCcccceeecCCCeEEEE-ccc
Confidence 345778877777787788999999998775432 1 133344555554455555554 333
Q ss_pred eEEEEEecCCCceeeeeeee-cc-cCCEEEEEEecCCCcEEEEEEcCC----------CcEEEEECC-CCeEEEEecCCC
Q 001176 428 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGDD----------KMIKVWDVV-AGRKQYTFEGHE 494 (1132)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~l~-~h-~~~v~~v~~s~d~~~~~l~s~~~d----------g~v~vwd~~-~~~~~~~~~~h~ 494 (1132)
+.+++.+++.......... +. ...-+.+...|+|. +..+... ..-.+|.+. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 6777776555422222211 11 23567888999998 3333333 111344444 566666666666
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-----CCc--eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
..-++|+|+|++. .++++=+..+.|.-|++.. ... ...+....+..-.++...+|.+-+++.. +.+.|.
T Consensus 163 ~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~ 238 (307)
T COG3386 163 TIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVV 238 (307)
T ss_pred EecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEE
Confidence 6778999998763 4445555568888887762 111 1222233455566777778887754432 224799
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEE
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 604 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1132)
+|+.. |+++..+..... .+++++|- ++.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 99988 999888887754 56777775 4445555544
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.11 Score=53.11 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=121.0
Q ss_pred CeeEEEEeeCCCEEEEee-CC--eEEEEECCCCeEEEEeeCCCC-CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 839 SAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
-...+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++... .++....-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 345688888888887776 44 599999999988766543321 223455554 345555667899999999999888
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeE
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 994 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v 994 (1132)
.++.- .+.=+.|+ .|++.|+.+.....+.++|.++.+.... |
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~-----------------------------------i 165 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT-----------------------------------I 165 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE-----------------------------------E
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE-----------------------------------E
Confidence 88863 45667787 4677777777777899999887553221 1
Q ss_pred EEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc----CCCCCCc
Q 001176 995 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV----SSNTAHP 1070 (1132)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~v 1070 (1132)
.|.+ .+.. -..++-+.+- +|...|=.-....|...|..+|+....+......+.... .....-.
T Consensus 166 ~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 166 QVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp E-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred EEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 1111 0001 2235555554 677777666777888899999998877654432221100 0112445
Q ss_pred EEEEeCCCCCCeEEEEeCCC
Q 001176 1071 LVIAPHPSEPNQIALGMSDG 1090 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg 1090 (1132)
-.++|.|..+++++||-.=-
T Consensus 234 NGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp EEEEEETTTTEEEEEETT-S
T ss_pred EeEeEeCCCCEEEEEeCCCC
Confidence 58999997777888775433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.034 Score=60.78 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=101.1
Q ss_pred eEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCE-------EEEEcCCCcEEEEECCCcccccceeeeCCC
Q 001176 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA-------LVSSGADAQLCMWSIDKWEKLKSRFIQAPA 965 (1132)
Q Consensus 893 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-------l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 965 (1132)
+|.++.....++-.|+..|+.+....-|.+ |+-+.+.|+++. -+.|-.|..|.-||+.-.... .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 344566667899999999999999987777 777888887642 223556888999998743321 122222
Q ss_pred CCCC-CCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 966 GRQS-PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 966 ~~~~-~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
++.- ....-.|.+-..+|..++.+.+|.|++||-.+...++..++ ...+|+.+..+.||++|++.+ +.++.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2211 11345677777788766668899999999866665555443 488999999999999987554 7788777754
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.24 Score=54.66 Aligned_cols=217 Identities=12% Similarity=0.133 Sum_probs=116.9
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEE---EecCC--CcEEEEEEcC----------CCcEEEEECCCC----eEE
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA---FAHPN--KQLCIVTCGD----------DKMIKVWDVVAG----RKQ 487 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~---~s~d~--~~~~l~s~~~----------dg~v~vwd~~~~----~~~ 487 (1132)
..|++.|..+.+.+. ...+..+. .+.+++ |..+. +..+|+.|+. .|.|.++++.+. ..+
T Consensus 2 s~i~l~d~~~~~~~~-~~~l~~~E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD-SFELEPNE-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEE-EEEEETTE-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEE-EEECCCCc-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 357888887776553 33454332 344443 33221 1226666542 288999999884 122
Q ss_pred EEe--cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 488 YTF--EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 488 ~~~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
..+ ....++|++++.. + ..|+ ++..+.|.+|++...+....... ....+.++... +++++.+.. .
T Consensus 80 ~~i~~~~~~g~V~ai~~~---~-~~lv-~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~----~ 148 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF---N-GRLV-VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA----M 148 (321)
T ss_dssp EEEEEEEESS-EEEEEEE---T-TEEE-EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES----S
T ss_pred EEEEEEeecCcceEhhhh---C-CEEE-EeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc----c
Confidence 221 2357889999864 2 3433 33458999999988772222211 22255555544 557777743 3
Q ss_pred CeEEEE--eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--eeEEEEeCCCCCCCc
Q 001176 564 SHLVEW--NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------M--NMLTTVDADGGLPAS 632 (1132)
Q Consensus 564 ~~i~~w--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~v 632 (1132)
..+.++ +....+....-.......+.++.|-++++.++++..+|.+.++.... + +.......|-+ ..|
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v 227 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIV 227 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-E
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-Ccc
Confidence 335555 54333233222222233678888886767899999999999998762 2 22222222222 246
Q ss_pred ceE---EEcC--CC------CEEEEEeCCCcEEEEE
Q 001176 633 PRL---RFNK--EG------SLLAVTTSDNGIKILA 657 (1132)
Q Consensus 633 ~~~---~~s~--~~------~~l~~~~~dg~i~iw~ 657 (1132)
+++ .+.| .+ ..++.++.+|.|...-
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 666 4444 12 2488888999998543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0046 Score=68.82 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=76.9
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee-EEEEcCCCCEEEEEcCCCcEEEEECCCccccc
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 957 (1132)
..|.-+.|+| .-.++|++..+|.|-++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88999999999999999987 788888887888888 99999999999999999999999999987654
Q ss_pred ceeeeCCCCCCCCCCCceeEEEC
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFH 980 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s 980 (1132)
...... ...+..+.|+
T Consensus 99 ~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-------ETDISKGIWD 114 (665)
T ss_pred cccccc-------ccchheeecc
Confidence 431111 1456677776
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=1.9 Score=52.69 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=120.5
Q ss_pred CeEEEEEcCCCCeEEEEeC-----CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcE
Q 001176 407 SVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMI 476 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v 476 (1132)
.+..+.|||||++||.+.. ...|++-|+.++..+.. .+.+ . -..++|++|++. ++++...+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCEE
Confidence 5677899999999987633 23588999988753321 1211 1 145999999985 33443322 478
Q ss_pred EEEECCCC--eEEEEecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEcCC--CCceEEecCCCCeEEEEEEcCC
Q 001176 477 KVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSAD 549 (1132)
Q Consensus 477 ~vwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~ 549 (1132)
+.+++.++ +....+........ +......++.+++..+. ++.+.+++... ......+.........+. ..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 88898887 33334443333333 22222334455544433 34688888532 222222322223323332 22
Q ss_pred CCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCC
Q 001176 550 GTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADG 627 (1132)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 627 (1132)
+..+...+..+.....|...++. .++....+.......+..+.+.. +..+++...+|.-+++-+.. +..+..+....
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 357 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFDD 357 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCCC
Confidence 33444333222224445555655 23222222222233577777773 33444555666655554432 22334333111
Q ss_pred CCCCcceEEEc--CCCC-EEEEEeC---CCcEEEEEcCCc
Q 001176 628 GLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 661 (1132)
. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 358 P-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1 112223344 3333 4443333 457778887765
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.34 Score=51.72 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=93.7
Q ss_pred eEEEEeeCCCEEEEeeCCeEEEEECCCCeEE-EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc
Q 001176 841 ACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
..+....++..++++..|.|.. ..+.|+.- .......+.+..+..++ +|++++++..-....-||--...-...-..
T Consensus 107 ~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~ 184 (302)
T PF14870_consen 107 FGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN 184 (302)
T ss_dssp EEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred eEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC
Confidence 3344444444444444444322 12223221 22334457788899999 899998875555555676432111111222
Q ss_pred ccCCeeEEEEcCCCCEEEEEcCCCcEEEEE-CCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEe
Q 001176 920 HQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 998 (1132)
Q Consensus 920 h~~~V~~l~~spdg~~l~s~~~D~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 998 (1132)
-..+|..|.|+|++.+.+.+ ..|.|++=+ ....+.-......... ....+..++|.+++...+++..|.+.+=.
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~~S~ 259 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLLVST 259 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EEEES
T ss_pred ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEEEeC
Confidence 45789999999998876654 788888877 2222211111111101 11457899999999988888888665533
Q ss_pred CCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 999 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 999 ~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
-.++.-..-............|.|.++.+-++.| .+|.|--|
T Consensus 260 DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 260 DGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp STTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 3444433333222235678899998776666655 48877554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0034 Score=43.19 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.3
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.041 Score=60.17 Aligned_cols=144 Identities=11% Similarity=0.117 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-----EEEecCCeEEEEEcCCCCc-eE-Eec
Q 001176 463 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RV-DYD 535 (1132)
Q Consensus 463 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~s~dg~i~~wd~~~~~~-~~-~~~ 535 (1132)
..+++.++.....++-.|++.|+.+.+++-+.. |+-+.+.|+..+..+ +.|-.|+.|.-||++-... .. ...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 344677777778899999999999999987776 777777776554443 4466788999999986544 11 111
Q ss_pred CC----CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 536 AP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 536 ~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
.+ .....|.+-..+| ++++++. +|-|++||--.......+.+... +|..+..+.+|+++++.+ +..+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEec-ccEEEE
Confidence 11 2244556655555 6666765 66699999733334445666665 899999999999988776 445555
Q ss_pred EEC
Q 001176 612 WDM 614 (1132)
Q Consensus 612 wd~ 614 (1132)
.+.
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0064 Score=67.74 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=78.2
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeE-EEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
...+.-+.|+|.-.++|.+. +|.|.+..+. .+.+.++..|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999998 8999999988 888899988888887 999999 8999999999999999999998766
Q ss_pred eee-ccccCCeeEEEEc
Q 001176 915 TKL-KGHQNRITGLAFS 930 (1132)
Q Consensus 915 ~~l-~~h~~~V~~l~~s 930 (1132)
... ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2244567777776
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.048 Score=65.21 Aligned_cols=146 Identities=12% Similarity=0.158 Sum_probs=98.0
Q ss_pred CCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC-eEEEEeecc---CCccEEEEEecCCeEEEEEcCCCCceEE-ec-
Q 001176 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD- 535 (1132)
Q Consensus 462 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~i~~~~~---~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~- 535 (1132)
.+.++|........|+-.|++.|+.+..+..|... |..++-... -...-.+.|-.++.+..||.+-.+.... -.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33334455556789999999999999999887754 776653211 0123456788889999999987653221 11
Q ss_pred ---CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001176 536 ---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 612 (1132)
Q Consensus 536 ---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1132)
.......|++-+.+| +||+|+. +|.|++||--..+....+.+... +|..+..+.||+++++.+ +..+.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEee-cceEEEE
Confidence 123467788888877 4555653 77799999433333344555555 899999999999988876 4456666
Q ss_pred EC
Q 001176 613 DM 614 (1132)
Q Consensus 613 d~ 614 (1132)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 54
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.14 Score=44.58 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=66.6
Q ss_pred eEEEEEcC---CC-CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 408 VNRCVWGP---DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 408 V~~v~~sp---dg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
|+++++.. || +.|++|+.|..|++|+-+. .+. ++. -.+.|++++-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 56666655 33 4899999999999998553 222 333 34578888877765 4888999999999983
Q ss_pred CeEEEEecCCCCCeEEEE-eeccCCc-cEEEEEecCCeEE
Q 001176 484 GRKQYTFEGHEAPVYSVC-PHHKESI-QFIFSTAIDGKIK 521 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~-~~~~~~~-~~l~s~s~dg~i~ 521 (1132)
...+...+.... +.+++ +..+++| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333444544333 55554 4444443 3577887777764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.51 Score=51.70 Aligned_cols=238 Identities=14% Similarity=0.110 Sum_probs=105.2
Q ss_pred CCceEEeec-ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--
Q 001176 780 SGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-- 856 (1132)
Q Consensus 780 ~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-- 856 (1132)
+.++|++.+ ..+.|.|.|+.+....|.-..+.. ...+... .+ -..-..+-.-|+|..++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe---------~~ev~~k--~g----~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIE---------PEEVFEK--TG----LSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE----------HHHHHHH--H-----EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeC---------HHHHHhh--cC----CCCCceeeecCCccEEEEeccC
Confidence 456677666 568899999875444332111100 0000000 00 01112233347888888762
Q ss_pred -C----CeEEEEECCCCeEEEEeeCCCC---CeEEEEEeCCCCCeEEEEe--------------------CCCcEEEEEc
Q 001176 857 -G----GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM--------------------EDSSVQIYNV 908 (1132)
Q Consensus 857 -d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~--------------------~dg~v~iwd~ 908 (1132)
+ |.+.++|-++.+.........+ --..+-|.| ..+.++|.. .-.++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 2 4599999998888887765332 245677788 667777654 2357999999
Q ss_pred ccceeeeeeccccC--CeeEEEEcCC--CCE-EEEEcCCCcEEEEEC-CCcccccceeeeCCCC----CCCC--------
Q 001176 909 RVDEVKTKLKGHQN--RITGLAFSPT--LNA-LVSSGADAQLCMWSI-DKWEKLKSRFIQAPAG----RQSP-------- 970 (1132)
Q Consensus 909 ~~~~~~~~l~~h~~--~V~~l~~spd--g~~-l~s~~~D~~i~iwd~-~~~~~~~~~~~~~~~~----~~~~-------- 970 (1132)
.+.+.++++.--.. -...|.|..+ ..+ ++.+.-.++|..|-- +.++=.....+..... -.-+
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 99999998864332 3556777544 443 333334444544433 3332111222222111 1000
Q ss_pred -CCCceeEEECCCCcEEEEE--eCCeEEEEeC-C---CCceeecCCC-------------CCCCCCeEEEEEccCCCEEE
Q 001176 971 -LVGETKVQFHNDQTHLLVV--HESQISVYDS-K---LECSRSWSPK-------------DALPAPISSAIYSCDGLLVY 1030 (1132)
Q Consensus 971 -~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~-~---~~~~~~~~~~-------------~~h~~~i~~i~~s~dg~~la 1030 (1132)
..-++.+.+|.|.++|.++ ..|.|+.||+ + .+...+...+ ....+...-+..|-||++|+
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 1357899999999999996 4899999999 2 2222221111 01122346788999999987
Q ss_pred EEe
Q 001176 1031 AGF 1033 (1132)
Q Consensus 1031 s~~ 1033 (1132)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.49 Score=51.83 Aligned_cols=150 Identities=12% Similarity=0.081 Sum_probs=74.2
Q ss_pred CccEEEEEe-cCCeEEEEEcCCCC-c---eEEecC---C--C--CeEEEEEEcCCCCEEEEEecC--CCCCCeEEEEeCC
Q 001176 507 SIQFIFSTA-IDGKIKAWLYDYLG-S---RVDYDA---P--G--NWCTMMAYSADGTRLFSCGTS--KEGESHLVEWNES 572 (1132)
Q Consensus 507 ~~~~l~s~s-~dg~i~~wd~~~~~-~---~~~~~~---~--~--~~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~ 572 (1132)
+.++|+..+ ..+.|.+.|+.+.- . ...+.. . . .....+-.-|+|+.++++-.+ +++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 67889999987432 1 122221 0 0 123344456899998877543 3456678999988
Q ss_pred CCceeeeeccccC--CceEEEEEeCCCCEEEEEE--------------------cCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 573 EGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAG--------------------DEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 573 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+.+.......... ..-..+.+.|..+.+++.. ....+.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777765432 1244577888888888753 14579999999999999998764322
Q ss_pred CcceEEEcCC--CCEEEEEe-CCCcEEEE
Q 001176 631 ASPRLRFNKE--GSLLAVTT-SDNGIKIL 656 (1132)
Q Consensus 631 ~v~~~~~s~~--~~~l~~~~-~dg~i~iw 656 (1132)
....+.|..+ ..+=++++ -..+|..|
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEE
Confidence 3456777653 44433333 23344444
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.3 Score=49.40 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=56.9
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCC-eEEEEEeCCCC----------------C-eEEEE
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN----------------N-IIAIG 897 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~----------------~-~lasg 897 (1132)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|-.+. +.-+....... . +++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 56688999999999888876 499999999999988888875443 22121111011 1 33456
Q ss_pred eCCCcEEEEEcccceeeeeec
Q 001176 898 MEDSSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 898 ~~dg~v~iwd~~~~~~~~~l~ 918 (1132)
-.-|.|.||.+.+|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 677889999998887665543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.72 Score=48.55 Aligned_cols=151 Identities=16% Similarity=0.086 Sum_probs=89.3
Q ss_pred CeEEEEEeCCCCCeEEEEe-CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE-CCCccccc
Q 001176 880 AATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEKLK 957 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd-~~~~~~~~ 957 (1132)
.+.+.++++ +++.+|... .++.-.+|-...+.....+. -...++...|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 688999999 676665544 33333444333333333321 223688889999988777777677777774 2332211
Q ss_pred ceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe----CCeEEEEeC----CC--Cce-eecCCCCCCCCCeEEEEEccCC
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS----KL--ECS-RSWSPKDALPAPISSAIYSCDG 1026 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~v~vwd~----~~--~~~-~~~~~~~~h~~~i~~i~~s~dg 1026 (1132)
...+...... ..|..+.+||||.+++... ++.|.+--+ .+ ..+ ............++++.|.+++
T Consensus 102 ~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1112221110 1689999999999999832 677777765 22 011 1111111225689999999999
Q ss_pred CEEEEEecCCc
Q 001176 1027 LLVYAGFCDGA 1037 (1132)
Q Consensus 1027 ~~las~~~dg~ 1037 (1132)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 98777655443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0069 Score=41.57 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.1
Q ss_pred CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 868 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 868 ~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
+++...+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 455677778899999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.36 Score=50.78 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=94.8
Q ss_pred CCeeEEEEeeCCCEEEEee--CCe--EEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE-cccce
Q 001176 838 ESAACIALSKNDSYVMSAS--GGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 912 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 912 (1132)
..+.+.++++||+.+|... ++. ++++... ....... ....++...|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 5555543 3222222 233788889999 677777777677777773 33332
Q ss_pred eee-eecc--ccCCeeEEEEcCCCCEEEEEc---CCCcEEEEECCCcccc----cceeeeCCCCCCCCCCCceeEEECCC
Q 001176 913 VKT-KLKG--HQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKL----KSRFIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 913 ~~~-~l~~--h~~~V~~l~~spdg~~l~s~~---~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
... .+.. -.+.|+.+.+||||..+|... .++.|.+=-+.....- .......... ....+..++|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence 221 1211 112899999999999877655 4566776655322211 0011111111 1256889999999
Q ss_pred CcEEEEE--eCCeEEE-EeCCCCce
Q 001176 983 QTHLLVV--HESQISV-YDSKLECS 1004 (1132)
Q Consensus 983 g~~l~~~--~d~~v~v-wd~~~~~~ 1004 (1132)
+.+++.+ .+..+.. ....+...
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG~~~ 201 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDGGPS 201 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccCCcc
Confidence 9988884 3443333 44444333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.9 Score=47.54 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=59.6
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC----CCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~l 420 (1132)
..++|+|.|||+ ++++ ...|.|++++ ..+.... .+ -++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PV--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--ee--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 578999999997 5655 4589999999 4443311 00 000 1123445668899999995 4433
Q ss_pred EEEeCC--------CeEEEEEecCCC-cee---ee-eeeec---ccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 421 GVAFSK--------HIVHLYTYNPTG-ELR---QH-LEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 421 as~~~d--------g~i~iwd~~~~~-~~~---~~-~~l~~---h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
++.+.. ..|.-|....+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 333321 245556665441 111 11 11111 233456799999995 555555443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.75 Score=50.72 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=120.4
Q ss_pred eeEEEEeeCCCEEEEeeCCeEEEEECCCCeE---EEEe----eCCCCCeEEEEEeCC---CCCeEEEEeCC--------C
Q 001176 840 AACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMF----MSPPPAATFLAFHPQ---DNNIIAIGMED--------S 901 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---~~~~lasg~~d--------g 901 (1132)
.++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++|+|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999888876699999999 44443 2222 123345789999992 24444444421 1
Q ss_pred cEEEEEcccc-------e-eeeeecc---ccCCeeEEEEcCCCCEEEEEcCCCc-------------EEEEECCCccccc
Q 001176 902 SVQIYNVRVD-------E-VKTKLKG---HQNRITGLAFSPTLNALVSSGADAQ-------------LCMWSIDKWEKLK 957 (1132)
Q Consensus 902 ~v~iwd~~~~-------~-~~~~l~~---h~~~V~~l~~spdg~~l~s~~~D~~-------------i~iwd~~~~~~~~ 957 (1132)
.|.-|.+..+ + .+..+.. .......|+|.|||.+.++.+..+. |.-.+.+. ....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 3443444332 1 1112222 2223456999999988888775443 22222211 0000
Q ss_pred ceeeeCCCCCC-----CCCCCceeEEECCC-CcEEEE--EeCCeEEEEeC-CCCc------e----------eecCCC--
Q 001176 958 SRFIQAPAGRQ-----SPLVGETKVQFHND-QTHLLV--VHESQISVYDS-KLEC------S----------RSWSPK-- 1010 (1132)
Q Consensus 958 ~~~~~~~~~~~-----~~~~~v~~~~~s~d-g~~l~~--~~d~~v~vwd~-~~~~------~----------~~~~~~-- 1010 (1132)
........+.. ........++|.|. |.+.++ +.+..-.|.-+ .+.. . ......
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG 241 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence 00000000000 01134568999999 777766 33333333222 1110 0 000000
Q ss_pred -------CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeC
Q 001176 1011 -------DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076 (1132)
Q Consensus 1011 -------~~h~~~i~~i~~s~-------dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1076 (1132)
..+...++.+.|-. +|.++++.-..+.|....++++..+.... .........++.+++.
T Consensus 242 ~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 242 FVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE-------EFLGGFGGRPRDVAQG 314 (331)
T ss_dssp S---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE-------EECTTSSS-EEEEEEE
T ss_pred cCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE-------EccccCCCCceEEEEc
Confidence 01234566666653 45566666666778887776543322111 1112444578899999
Q ss_pred CCCCCeEEEEeCCCcEE
Q 001176 1077 PSEPNQIALGMSDGAVH 1093 (1132)
Q Consensus 1077 p~~~~~l~s~~~Dg~i~ 1093 (1132)
| ||.+.++...+|+|.
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 9 888888888888873
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.14 Score=44.46 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=64.4
Q ss_pred eeEEEEc---cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 346 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 346 V~~~~~s---pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
|+++++. .||..-|++||.|..|+||+=.. .+.. ....+.|.++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 4555544 46767799999999999998542 1111 114557777777666 66888
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec---CCCcEEEEEEcCCCcEE
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~dg~v~ 477 (1132)
+..+|+|-+|+-.. +..+ .+. +..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999998543 2222 222 22355655533 3443 578887777664
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.42 Score=56.89 Aligned_cols=228 Identities=11% Similarity=0.033 Sum_probs=115.4
Q ss_pred eEEEEECCCCeEE--EEeeCCCCCeEEEEEeCCCCCeEEEEeCC------CcEEEEEccccee--eeeeccccCCeeEEE
Q 001176 859 KVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEV--KTKLKGHQNRITGLA 928 (1132)
Q Consensus 859 ~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 928 (1132)
.+..||..+.+-. ..+...... .+++. - ++.+++.|+.+ ..+..||..++.- +..+....... .+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence 4677887765422 222211111 22333 2 56788888854 3477888776542 22222111111 12
Q ss_pred EcCCCCEEEEEcCCC-----cEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe-C-----------
Q 001176 929 FSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------- 991 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----------- 991 (1132)
..-+|+..+.||.++ ++..||..+.+ ...+....... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence 233778888888764 47889987643 11111111110 111122 23566666542 2
Q ss_pred ------------CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEeCCC-cceeccc
Q 001176 992 ------------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFRCRI 1052 (1132)
Q Consensus 992 ------------~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d------g~i~vwd~~~-~~~~~~~ 1052 (1132)
..+..||...+.-....+.. .......+..-+|+..+.|+.+ ..|..||.++ .+-...-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 24778887444332222211 1112222223467777777654 2467888887 4432111
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCC--cEEEEecCCCcccccCCCCCCCCCC
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDNGPL 1115 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg--~i~vW~~~~~~~~~~~~~~~~~~~~ 1115 (1132)
. +|.. ....-.+.. ++.+.++||.|+ .+-.+|+.+.+ |..-.|++..++
T Consensus 498 ~----m~~~-----r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~~ 548 (557)
T PHA02713 498 T----TESR-----LSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNSY 548 (557)
T ss_pred c----cCcc-----cccceeEEE---CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCce
Confidence 1 1111 011111222 678999999998 78888888877 887777766554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.39 Score=56.89 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=123.8
Q ss_pred CCCeEEEEeCCC------eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC------CcEEEEECCC
Q 001176 416 DGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVA 483 (1132)
Q Consensus 416 dg~~las~~~dg------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------g~v~vwd~~~ 483 (1132)
.+.+++.||.++ .+..||..++.-. ....+. +...-.++++.. +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 455667777663 5778888876322 111222 222334455543 44 78888888 3677888877
Q ss_pred CeEEE--EecC--CCCCeEEEEeeccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 484 GRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 484 ~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
.+... .+.. +...+..+ +|.+.+.|+.||. +..||..+.+-...-......-..-...-+|+..+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred CceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 76432 1111 11222222 4478889998875 66777766544332222222222222334677777
Q ss_pred EEecCCCCC--CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeEEEEeCCC
Q 001176 555 SCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 555 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+||.++..+ ..+..||..+++....-.-.....-..++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 777554432 678999998876443322211111111222 2456666677665 37788888776555432222
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCC-----cEEEEEcCCc
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~ 661 (1132)
....+..+. -++...++|+.|| +|..||..++
T Consensus 512 ~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 111111222 2566777888776 4556655444
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.053 Score=64.55 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=78.0
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
.+..++.|+..|.+...|+.+.-. ....=..-.++|++++|+.||+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 566789999999999988876421 1111112356999999999999 889999999999999999999999988888
Q ss_pred CeEEEEeecc-CCccEEEEEecCCeEEEEEc
Q 001176 496 PVYSVCPHHK-ESIQFIFSTAIDGKIKAWLY 525 (1132)
Q Consensus 496 ~v~~i~~~~~-~~~~~l~s~s~dg~i~~wd~ 525 (1132)
+.+++-+... +++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8887765432 23346777776665 5644
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.08 E-value=3.3 Score=46.45 Aligned_cols=291 Identities=13% Similarity=0.158 Sum_probs=157.4
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee-----CCCEEEEe
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMSA 855 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~-----dg~~la~~ 855 (1132)
...+++|+..|.++||+-......+. ..++...+ ..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEEe
Confidence 35689999999999997533222111 11222212 44666665432 34567776
Q ss_pred eCCeEEEEECCC--Ce-------EEEEeeCCCCC--eEEEEEeCC----CCCeEEEEeCCCcEEEEEcccceeeeeeccc
Q 001176 856 SGGKVSLFNMMT--FK-------VMTMFMSPPPA--ATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 920 (1132)
Q Consensus 856 sdg~i~vwd~~~--~~-------~~~~~~~~~~~--i~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 920 (1132)
.-.++.||.+.. +. .+.....|.-. ...++.-|- +..++.+=+-||.+.+|+-+.......+..
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888888731 11 11222223222 233333332 246888899999999999766554444443
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceee------eCC-CCCC-------CCC---CCceeEEECCCC
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI------QAP-AGRQ-------SPL---VGETKVQFHNDQ 983 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~------~~~-~~~~-------~~~---~~v~~~~~s~dg 983 (1132)
.--...+.+.+....+++++.+..+.-|....-........ ... .+.. .-+ ..+..+.++...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22233478888888999999998888887632110000000 000 0000 000 122233444445
Q ss_pred cEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEc----cCCC---EEEEEecCCcEEEEeCCCcceecccCCCc
Q 001176 984 THLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS----CDGL---LVYAGFCDGAIGVFDAETLRFRCRIGPSA 1056 (1132)
Q Consensus 984 ~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s----~dg~---~las~~~dg~i~vwd~~~~~~~~~~~~~~ 1056 (1132)
..+++-...++.+.+.+|.. +.....+ -.+.....|. .++. .++.++.++++.||.=.+..--+++.
T Consensus 254 ~~IvvLger~Lf~l~~~G~l-~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~--- 327 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKDNGSL-RFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP--- 327 (418)
T ss_pred ceEEEEecceEEEEcCCCeE-EEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence 55666667777777776533 2222222 1122112221 1222 47888999999998766554433331
Q ss_pred cccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1057 YIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1057 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
|.--.+.++..++-...|++-+.+|.+.+-=+.|....+..|++
T Consensus 328 ---------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~ 371 (418)
T PF14727_consen 328 ---------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPL 371 (418)
T ss_pred ---------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCc
Confidence 11111223322324579999999999999999887765555443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.1 Score=58.26 Aligned_cols=158 Identities=14% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCCeEEEEEeCCCCCeEEEEe--CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC----CEEEEEcCCCcEEEEECC
Q 001176 878 PPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL----NALVSSGADAQLCMWSID 951 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg----~~l~s~~~D~~i~iwd~~ 951 (1132)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|+|-+ ..|........|.+|.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35688899985 555555542 334333322 2334444 458899999853 356667778889999986
Q ss_pred Cc--ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCC
Q 001176 952 KW--EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG 1026 (1132)
Q Consensus 952 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg 1026 (1132)
.. +..+...-+.-+-..+...-...+.|+|....|++- ....-.++++ +...++.=... .+.|.+.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcC
Confidence 32 211111111111111111234578899999999883 3333345555 34443332222 7889999999999
Q ss_pred CEEEEEe-cCCcEEEEeCCCc
Q 001176 1027 LLVYAGF-CDGAIGVFDAETL 1046 (1132)
Q Consensus 1027 ~~las~~-~dg~i~vwd~~~~ 1046 (1132)
++|+++- ..=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 9876653 3345788997654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.45 Score=56.57 Aligned_cols=201 Identities=6% Similarity=0.016 Sum_probs=99.8
Q ss_pred CCCcEEEEEEcCC------CcEEEEECCCCeEEEEecC---CCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEcC
Q 001176 461 PNKQLCIVTCGDD------KMIKVWDVVAGRKQYTFEG---HEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYD 526 (1132)
Q Consensus 461 d~~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~~wd~~ 526 (1132)
++. +++.||.+ ..+..||..+.... .+.. .......+.+ ++.+.+.||.++ .+..||..
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECC
Confidence 455 66667753 35778888776542 2211 1111111221 346777787654 47788887
Q ss_pred CCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC-------------------CCeEEEEeCCCCceeeeeccccCCc
Q 001176 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG-------------------ESHLVEWNESEGAIKRTYSGFRKRS 587 (1132)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~ 587 (1132)
+..-...-..........+..-+|+..+.||.++.. ...+..||..+.+....-.-... .
T Consensus 376 ~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r 454 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-T 454 (557)
T ss_pred CCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-c
Confidence 654332111111111111122356666666643210 24588899887654322211111 1
Q ss_pred eEEEEEeCCCCEEEEEEcC------CeEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC--cEEEEEc
Q 001176 588 LGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN--GIKILAN 658 (1132)
Q Consensus 588 v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~ 658 (1132)
.......-++...+.||.+ ..+..||..+ .+................++ -++++.++|+.+| .+..||.
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCc
Confidence 1111122345556666643 2467899887 45443322222111222222 3688888999888 7788888
Q ss_pred CCcceeeeeccccc
Q 001176 659 SDGVRLLRMLEGRA 672 (1132)
Q Consensus 659 ~~~~~~~~~~~~~~ 672 (1132)
.++ +.......|+
T Consensus 533 ~~~-~W~~~~~~~~ 545 (557)
T PHA02713 533 YTY-EWNHICHQHS 545 (557)
T ss_pred ccc-cccchhhhcC
Confidence 776 4443334443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.7 Score=44.88 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=118.1
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC-cccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-LMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
....+.++.|+|+.+.|++......-.|+= + ..|. +.+.++.+ -.....+.+.
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl---------------------t-~~GdlirtiPL~g----~~DpE~Ieyi 137 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL---------------------T-KEGDLIRTIPLTG----FSDPETIEYI 137 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE---------------------e-cCCceEEEecccc----cCChhHeEEe
Confidence 445599999999999999888776555542 1 2233 33334444 3445678888
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEEEE-------eeC--C-CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce---
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVMTM-------FMS--P-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--- 912 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~~~-------~~~--~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--- 912 (1132)
.+|+++++-- ++.+.++.+........ +.. + ...--.++|+| ..+.|..+-.-.=+.||.+..+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888887776 78888887765422211 111 2 44567899999 55555556555557777665332
Q ss_pred eeeeeccc-------cCCeeEEEEcCC-CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCc
Q 001176 913 VKTKLKGH-------QNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 984 (1132)
Q Consensus 913 ~~~~l~~h-------~~~V~~l~~spd-g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 984 (1132)
.+.....+ -..|.++.|.+. +.+|+-+..++.+.-.|....-...........|-.........+++.++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111111 224677888764 5666767777777777776542111112222333222223456789999998
Q ss_pred EEEEEeCCeEE
Q 001176 985 HLLVVHESQIS 995 (1132)
Q Consensus 985 ~l~~~~d~~v~ 995 (1132)
.-+++.-+-.+
T Consensus 297 lYIvSEPnlfy 307 (316)
T COG3204 297 LYIVSEPNLFY 307 (316)
T ss_pred EEEEecCCcce
Confidence 77776544433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=6.4 Score=48.22 Aligned_cols=243 Identities=10% Similarity=0.020 Sum_probs=119.8
Q ss_pred CeeEEEEccCCCeEEEEEcCC----CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.+..+.+||||++++.+-+.+ ..+++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 577889999999655554333 3588888887764321 0111 11469999999877
Q ss_pred EEEeCC------CeEEEEEecCCCc-eeeeeeeecccCCEE-EEEEecCCCcEEEEEEc-CCCcEEEEECC--CCeEEEE
Q 001176 421 GVAFSK------HIVHLYTYNPTGE-LRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCG-DDKMIKVWDVV--AGRKQYT 489 (1132)
Q Consensus 421 as~~~d------g~i~iwd~~~~~~-~~~~~~l~~h~~~v~-~v~~s~d~~~~~l~s~~-~dg~v~vwd~~--~~~~~~~ 489 (1132)
+....+ ..|..+++.++.. -.. .+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 665432 3577788887732 111 2222223333 33334477753322222 34578888843 3442222
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEcCCCC-ceEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
+..-......+. +. ++ .+++.... ...|...++.... ....+... ...+..+.+. ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 221122222222 21 22 33333322 2234444444222 22233332 3367778876 345554432 13455
Q ss_pred eEEEEeCCCCceeeeec-cccCCceEEEEEe--CCCC-EEEEEE---cCCeEEEEECCCCe
Q 001176 565 HLVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 618 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (1132)
.+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 57777765433 33332 1111 22323344 3333 343332 45778888988764
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.025 Score=67.13 Aligned_cols=107 Identities=13% Similarity=0.234 Sum_probs=75.2
Q ss_pred CcEEEEE-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccc
Q 001176 983 QTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1061 (1132)
Q Consensus 983 g~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1061 (1132)
+.+++++ +.|.+...|.+++. ..+.....-.++|++++|+.||++++.|-.+|.|.+||+..++.+..+....
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~----- 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG----- 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC-----
Confidence 4456664 56788888885542 2122222237899999999999999999999999999999999888776331
Q ss_pred ccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1062 AVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1062 ~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
.....++.+.+.. ++..++++..-|. +|++.=..
T Consensus 173 ---ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 173 ---APVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred ---CccceEEEEEEeC-CCcEEEEccCCCc--eEEEEech
Confidence 1124455666665 5567888877776 67664443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.9 Score=43.20 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=114.8
Q ss_pred cccceEEEEEecCCceEEeecccc--eeEEEeeccccCCCCCccccccccccccCCCcCcccc-cCCCCCCCCCCeeEEE
Q 001176 768 AASKVVRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN-DINESKPTEESAACIA 844 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~h~~~~v~~~~ 844 (1132)
...-...+.|..+|..+-+.+.-| .++.+ |+.+|++... .+.. ..--..++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~----------------------d~~tg~~~~~~~l~~----~~FgEGit 96 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKV----------------------DLETGKVLQSVPLPP----RYFGEGIT 96 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEE----------------------ETTTSSEEEEEE-TT----T--EEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEE----------------------ECCCCcEEEEEECCc----cccceeEE
Confidence 345567888888888777777765 34444 4455554322 2222 33334566
Q ss_pred EeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC--
Q 001176 845 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN-- 922 (1132)
Q Consensus 845 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-- 922 (1132)
...|.-+..+--++...+||..+.+.+.++.-. ++=..++. +++.|+..+....++++|..+.+...++.-..+
T Consensus 97 ~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 97 ILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EECCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence 655544555555899999999999999988743 45566663 556666666677899999888776666543322
Q ss_pred ---CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCC-------CCCCCCCCCceeEEECCCCcEEEEEe
Q 001176 923 ---RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP-------AGRQSPLVGETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 923 ---~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~dg~~l~~~~ 990 (1132)
.++-|.|- +|...|-.=....|...|..+|+.....-+..+ ..+.....-...||+.|.+..+.+..
T Consensus 173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 35667775 677777777777788888888876553322111 11111124577999988887777644
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.03 Score=40.35 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=32.0
Q ss_pred CCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCccccc
Q 001176 1068 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1105 (1132)
Q Consensus 1068 ~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~ 1105 (1132)
..+..++|+| ..++||.|+.||.|.++++ ++++.|.
T Consensus 12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 5688999999 7889999999999999999 7787764
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.5 Score=43.33 Aligned_cols=143 Identities=11% Similarity=0.068 Sum_probs=81.1
Q ss_pred cCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeEEEEecCCC--------CCeEEEEeeccCCccEEEEEecCCeE
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKI 520 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~h~--------~~v~~i~~~~~~~~~~l~s~s~dg~i 520 (1132)
..+.++-..+|+|+ + +.|. .|-.- ......|..-.-+.+|. .--+.++|+.+ ...+.++-+.+-.|
T Consensus 108 knR~NDgkvdP~Gr--y-y~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--Y-YGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--e-eeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEE
Confidence 34566777889998 4 3332 12111 11112222222222332 23356677633 23566777788888
Q ss_pred EEEEcCC--CC-----ceEEecC----CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 521 KAWLYDY--LG-----SRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 521 ~~wd~~~--~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
.-||.+- +. .+..+.. .....-.++...+|++.+++.. .++|...|+.+|+.+.++.-... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 8888432 21 1222211 1112233455667777777653 67899999999999999988766 799
Q ss_pred EEEEeCCC-CEEEE
Q 001176 590 VVQFDTTR-NRFLA 602 (1132)
Q Consensus 590 ~~~~~~~~-~~l~~ 602 (1132)
+++|.-.. ..+++
T Consensus 258 sccFgGkn~d~~yv 271 (310)
T KOG4499|consen 258 SCCFGGKNLDILYV 271 (310)
T ss_pred EEEecCCCccEEEE
Confidence 99997542 44444
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.61 E-value=5.2 Score=44.99 Aligned_cols=278 Identities=11% Similarity=0.142 Sum_probs=143.8
Q ss_pred cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc---C--CCCeEEEEeCCC
Q 001176 353 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG---P--DGLMLGVAFSKH 427 (1132)
Q Consensus 353 pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---p--dg~~las~~~dg 427 (1132)
++++..+++||.+|.++||+...++......+ +-..-+.+|..++.- + +...||+ =.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 44555799999999999999965442211000 012234577777643 2 2335555 4566
Q ss_pred eEEEEEecCCCce------eeeeeeeccc--CCEEEEEEec----CCCcEEEEEEcCCCcEEEEECCCCeEEEEecC--C
Q 001176 428 IVHLYTYNPTGEL------RQHLEIDAHV--GGVNDIAFAH----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--H 493 (1132)
Q Consensus 428 ~i~iwd~~~~~~~------~~~~~l~~h~--~~v~~v~~s~----d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h 493 (1132)
.+.||.+...... .....+..|. .....++.-| .++. +|..-+-||.+.+++-+.-...+.+.+ .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7888887422111 1111222342 2233344433 2233 788889999999999554443444443 3
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--------------------c---eEEecCCCC--eEEEEEEcC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--------------------S---RVDYDAPGN--WCTMMAYSA 548 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--------------------~---~~~~~~~~~--~v~~~~~s~ 548 (1132)
.+++ ++.+.. +.+++++.+..+..|....-. . ...+..... .+..+.++.
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3443 444444 678889888888888642110 0 001111111 233333433
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCeeEE
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
....+++-+ ...+.+.+. +|......+-... +.....|.. ++ ..++.++.++.+.||.=. +++.
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~W 322 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVW 322 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEE
Confidence 333444443 455777775 3544333222111 222222221 22 247888899999998633 3333
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
........-.+.-..|..-...|++-+.+|.+.+-=+-|.
T Consensus 323 sA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 323 SAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred ecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 3333211111222223333457888888999988766555
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.023 Score=55.53 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=57.4
Q ss_pred cEEEE-EeCCeEEEEeCC--CCceeecCCCCCCCCCeEE-EEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccc
Q 001176 984 THLLV-VHESQISVYDSK--LECSRSWSPKDALPAPISS-AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP 1059 (1132)
Q Consensus 984 ~~l~~-~~d~~v~vwd~~--~~~~~~~~~~~~h~~~i~~-i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1059 (1132)
.-+++ +.+|.|.+|... +......... ...|.. +.-..++.+..+++.||.|+-|++.-++.+....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g------ 141 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG------ 141 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcc---cccceeccccccccceeEEeccCCceeeeccccCceeeeec------
Confidence 34555 678999999883 2222222211 222222 2223456688999999999999999988877664
Q ss_pred ccccCCCC-CCcEEEEeCCCCCCeEEEE--eCCCcEEEEecCC
Q 001176 1060 TYAVSSNT-AHPLVIAPHPSEPNQIALG--MSDGAVHVVEPSD 1099 (1132)
Q Consensus 1060 ~~~~~~~~-~~v~~~~~~p~~~~~l~s~--~~Dg~i~vW~~~~ 1099 (1132)
+|. .......-+. .+++|+.+ |.|..++.|++..
T Consensus 142 -----~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 142 -----QHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -----cccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 332 1111222222 34455555 6666666666644
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.78 Score=44.38 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=108.3
Q ss_pred CCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEE--EEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC
Q 001176 848 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATF--LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922 (1132)
Q Consensus 848 dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 922 (1132)
+|.++.+.+ ...|++||+.+++.+..-.-....+.. +.-. +..+.+-.-.+|.-++||..+-+++.++. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666655 356999999999887665432222211 1111 22344445578889999999988888776 344
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCC
Q 001176 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1002 (1132)
.-++++ .|+..|+.+....++++-|.++..... .+....+|.
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~------------------~v~VT~~g~------------------ 173 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELD------------------TVQVTDDGV------------------ 173 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhhhcc------------------eEEEEECCe------------------
Confidence 445655 366667777777778877777644221 111111221
Q ss_pred ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc-CCCCCCcEEEEeCCCCCC
Q 001176 1003 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV-SSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1003 ~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~ 1081 (1132)
.+ ..++.+.| -||.+.|-.-.+..|...+.++|+.+..+..+...+.... ..|..-.-.+++.|+.++
T Consensus 174 pv----------~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 174 PV----------SKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred ec----------ccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 00 11111222 2555556555566666677777777666554433222211 233345558999997778
Q ss_pred eEEEEeCC
Q 001176 1082 QIALGMSD 1089 (1132)
Q Consensus 1082 ~l~s~~~D 1089 (1132)
++++|-.=
T Consensus 243 ~~iTGK~w 250 (262)
T COG3823 243 FLITGKLW 250 (262)
T ss_pred EEEecCcC
Confidence 88887543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.043 Score=53.76 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=71.2
Q ss_pred CCEEEEee-CCeEEEEECCCC-eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecccc-CCee
Q 001176 849 DSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 925 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 925 (1132)
+.-+++|. +|.|.+|+..-. .....+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44566665 999999987632 11111222223344433333356688999999999999999998888887787 5666
Q ss_pred EEEEcCCCCEEEEE--cCCCcEEEEECCC
Q 001176 926 GLAFSPTLNALVSS--GADAQLCMWSIDK 952 (1132)
Q Consensus 926 ~l~~spdg~~l~s~--~~D~~i~iwd~~~ 952 (1132)
.+..+..+..++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666677777777 7788888888765
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2 Score=50.99 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=117.4
Q ss_pred EEEEEcCC------CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC-C---
Q 001176 358 ILLVGTNV------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-H--- 427 (1132)
Q Consensus 358 lla~g~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d-g--- 427 (1132)
+++.|+.+ ..+..+|..++....... +. +...-.+++.. +|...++||.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 67777766 367788877764332111 11 11122233333 56888889888 3
Q ss_pred --eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC-----cEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 428 --IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 428 --~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++..||..+++ ......+........... -+|. +.|.||.|| +|-.||..+.+.-..- .......+.
T Consensus 348 l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~--l~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAV--LDGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCc-eeccCCccCccccceeEE--ECCE--EEEEeccccccccccEEEecCCCCcccccC-CCCcceeee
Confidence 57788887765 222222222222222222 2465 788899887 5677887766532211 111122222
Q ss_pred EeeccCCccEEEEEecCC------eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCC
Q 001176 501 CPHHKESIQFIFSTAIDG------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESE 573 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~ 573 (1132)
....- +|.+.++|+.++ ++..||..+..-...-.....+...-+..-++...+.||.++ .....+..||..+
T Consensus 422 gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 422 GVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 21111 447788888655 466788776654443222222111112234566666666533 1233478899887
Q ss_pred Cceeeee--ccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCee
Q 001176 574 GAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNM 619 (1132)
Q Consensus 574 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 619 (1132)
.+....- ..... .+..+. -++...++||.|| +|..||..+.+.
T Consensus 501 ~~W~~v~~m~~~rs-~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRS-AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CceeEcccCccccc-cccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 6654331 11111 122122 2355566677654 355666655543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.7 Score=42.77 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=118.5
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcc------cc-eeeeeecc-----ccCCeeEEEEcCCCCE------------E
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR------VD-EVKTKLKG-----HQNRITGLAFSPTLNA------------L 936 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~-~~~~~l~~-----h~~~V~~l~~spdg~~------------l 936 (1132)
-..|+|+| .+.+-++....+...+||.. .. .++-.+.. -....+.+.|+....+ +
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46799999 78888877778899999986 11 22333332 2245778888654332 5
Q ss_pred EEEcCCCcEEEEECCCccc---ccceeeeCCCCCCCCCCCceeEEEC--CCCcEEEEE--eCCeEEEEeCCCCceee---
Q 001176 937 VSSGADAQLCMWSIDKWEK---LKSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVV--HESQISVYDSKLECSRS--- 1006 (1132)
Q Consensus 937 ~s~~~D~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~--~d~~v~vwd~~~~~~~~--- 1006 (1132)
+.+++||+|.-|...-... .....+. .+... ..-..+++. ..+.+|..+ ..++|.|||-+...+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d--~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD--ASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc--cCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 6788999999998643322 0111111 11111 112334444 446677775 58999999984443321
Q ss_pred cC----CCCCCCCCeEEE---------EEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEE
Q 001176 1007 WS----PKDALPAPISSA---------IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1073 (1132)
Q Consensus 1007 ~~----~~~~h~~~i~~i---------~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1073 (1132)
+. +...-...|..+ .-.+++..=+.|..-|.|-+||.. |.+++++... +.-..+..+
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~---------g~LNaPWG~ 249 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS---------GRLNAPWGL 249 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC---------CcccCCcee
Confidence 00 000001112111 111222222334445789999998 7888887532 333444555
Q ss_pred EeCCC-----CCCeEEEEeCCCcEEEEecCCCc
Q 001176 1074 APHPS-----EPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1074 ~~~p~-----~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+..|. .+.+|+---.||+|..+|..+++
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 55442 46788887789999999999888
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.058 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.0
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 435 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~ 435 (1132)
....|.+++|+|..++||.|+.+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999984
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.4 Score=45.46 Aligned_cols=174 Identities=9% Similarity=0.093 Sum_probs=110.3
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 995 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~ 995 (1132)
+.+-...+.++.|+|+.+.|++......-.+|=...|+.+...++.... ....+.+.-+|+++++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3444555999999999999999988888888877777766655555433 34578888899888884 678888
Q ss_pred EEeCCCC-ceeec------CCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCc-cccccccCCC
Q 001176 996 VYDSKLE-CSRSW------SPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA-YIPTYAVSSN 1066 (1132)
Q Consensus 996 vwd~~~~-~~~~~------~~~~~h-~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~ 1066 (1132)
++.++.. ..... .....+ ....-.++|+|....|..+-+-.=+.||.+..+.. .+..+. ..|.....--
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~--~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS--SLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc--ccccccccCcccccceE
Confidence 8776221 11111 111112 45677899999999999998888888877763321 111000 0000000000
Q ss_pred CCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1067 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1067 ~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
-..+..+.|.+..+.+|+-+..++.+..-|..-
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 123456778877777888777777777766643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.30 E-value=4.4 Score=49.68 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=95.2
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeE-------------EEEeeccCCccEEEEEec----------CCeEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKA 522 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~s~----------dg~i~~ 522 (1132)
.|+.++.|+.|.-.|.++|+....+.. .+.|. .+.-.|--.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 577888899999999999999877632 22211 011011101245666643 688999
Q ss_pred EEcCCCCceEEecCC---------CCe--------E-EEEEEcCCCCEEEEEec--------------CCCCCCeEEEEe
Q 001176 523 WLYDYLGSRVDYDAP---------GNW--------C-TMMAYSADGTRLFSCGT--------------SKEGESHLVEWN 570 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~---------~~~--------v-~~~~~s~~~~~l~~~~~--------------~~~~~~~i~~wd 570 (1132)
+|.++++.+..+... .+. + ..+++.++...++.... +..-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999887765421 011 1 23445555445444221 011235678889
Q ss_pred CCCCceeeeecc-ccCC-------ceEEEEEeC-CCC---EEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 571 ESEGAIKRTYSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 571 ~~~~~~~~~~~~-~~~~-------~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
.++|+....++. |++- ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+...+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 999998887765 3210 111122332 452 67778899999999999998887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.2 Score=43.82 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=64.7
Q ss_pred eEEEEeeCCCEEEEee--CCeEEEEE--CCCCeE-----EEEeeC----CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 841 ACIALSKNDSYVMSAS--GGKVSLFN--MMTFKV-----MTMFMS----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s--dg~i~vwd--~~~~~~-----~~~~~~----~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
..++|+.|.+.+...+ +-+|.-|| ..+|.. +..++. .....-.+++.. +|.+.++.-..|+|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4678888888777665 66787788 455432 233332 111233455666 778888788888999999
Q ss_pred cccceeeeeeccccCCeeEEEEcC
Q 001176 908 VRVDEVKTKLKGHQNRITGLAFSP 931 (1132)
Q Consensus 908 ~~~~~~~~~l~~h~~~V~~l~~sp 931 (1132)
..+|+.+.++.-....|++++|--
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999988899999999953
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.82 Score=53.57 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=77.5
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc-----
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 525 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~----- 525 (1132)
...-+.-+.-++ ..+.-+....+.|||...+...+.-. ...+.|.++.|...++++.+++.+..+.|.+|--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444444555455 33334445689999999887654332 4578999999999999999999999999999843
Q ss_pred CCCC----ceE--EecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 526 DYLG----SRV--DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 526 ~~~~----~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.... .+. .+..+ .++|.+..|.++|..++.+| +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 111 22333 36889999999998887764 35888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.61 E-value=7.7 Score=41.59 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=81.0
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCe-EEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc-ccceee
Q 001176 837 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVK 914 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~-i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~-~~~~~~ 914 (1132)
...+..+..++||+++++++.|. ..-||-....-...-......|..+.|.| ++.+.+. ...|.|+.=+. ...+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCCcccc
Confidence 55688889999999999999665 45677542111112222457899999999 7666554 48888888762 222211
Q ss_pred e----eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe
Q 001176 915 T----KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 915 ~----~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 990 (1132)
. .+..-.-.+..++|.+++...|+++. |.+ +...+.++.=. ........ ......+.|.++.+-++.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~--~~~~~~~~---~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQ--KDRVGENV---PSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-E--E-GGGTTS---SS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccce--ECccccCC---CCceEEEEEcCCCceEEECC
Confidence 1 12223334789999998887776654 433 34445444111 11111111 14578899988888899999
Q ss_pred CCeEEEE
Q 001176 991 ESQISVY 997 (1132)
Q Consensus 991 d~~v~vw 997 (1132)
+|.+.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9988665
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.9 Score=42.67 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=92.3
Q ss_pred CeEEEEeCCCcEEEEEcc--cceeeeeeccccCCeeEEEEcCCCCEEEEEcCC------CcEEEE-ECCCcccccceeee
Q 001176 892 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMW-SIDKWEKLKSRFIQ 962 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D------~~i~iw-d~~~~~~~~~~~~~ 962 (1132)
+.|..+...+.|.+|++. ..+.+.++..- +.|..+.++..|++|+|--.+ ..+|+| ++............
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555677789999998 34566667644 789999999999999986432 255665 33321111111111
Q ss_pred CCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 963 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 963 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
...||.. +. .+.+. ....+.+-. +. ...+..+++-.|-..-|+.|+ ++.+.+|.
T Consensus 108 RiaG~~v-----~~-~~~~~-------~~~qleiiE--------lP----l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRV-----TP-SFNES-------SKDQLEIIE--------LP----LSEPPLCIACCPVTGNLLVGC-GNKLVLFT 161 (215)
T ss_pred EEccccc-----cc-CCCCc-------cccceEEEE--------ec----CCCCCCEEEecCCCCCEEEEc-CCEEEEEE
Confidence 1112110 00 00000 000111111 11 155677888777544455565 67899998
Q ss_pred CCCcce-ecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1043 AETLRF-RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1043 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
+..... ...+....+......+..+..+..+++- ++++|..+ |-.+++..+.
T Consensus 162 l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 162 LKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred EEEEEEecccccEEechhhhhheecCceEEEEEEE---eeEEEEec-CCEEEEEEEe
Confidence 875544 2222211222222233445557777773 56777665 6666666653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.28 E-value=1 Score=52.88 Aligned_cols=124 Identities=13% Similarity=0.180 Sum_probs=77.5
Q ss_pred EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec-cccCCeeEEEE--cCCCCEEEEEcCCCcEEEE
Q 001176 872 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAF--SPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 872 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~--spdg~~l~s~~~D~~i~iw 948 (1132)
.++......++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.| .|||+.+++.|-...|.++
T Consensus 23 ~~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 23 STFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLY 101 (631)
T ss_pred EEEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEE
Confidence 33444444555565555 45555554455589999998876443322 35778999998 4789999999999999998
Q ss_pred ECCC----cccccceeeeCC--CCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC
Q 001176 949 SIDK----WEKLKSRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 999 (1132)
Q Consensus 949 d~~~----~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 999 (1132)
.-.- ........+... ..+.+ .++.+..|.++|.+ +++.++.+.|+|-
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~L-vV~sGNqlfv~dk 155 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTL-VVGSGNQLFVFDK 155 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeE-EEEeCCEEEEECC
Confidence 5421 111111111111 11221 46788999999965 4556778888886
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.23 E-value=5.9 Score=40.41 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=125.3
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccccee
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 960 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 960 (1132)
-..++-+| +|..-.++...|.|--.|-.+|+....--+....-..|...|||..-++-+.. .|.-.|-++.+.....
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~- 140 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP- 140 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee-
Confidence 45577778 78777788888888778888887665544555556678888998877765544 4666666665532221
Q ss_pred eeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 961 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
+. ..+ .........|.+.|++-+++..|.---.|.....++.+.... ...-..|+..|||.+-++.-.++.|..
T Consensus 141 lp--~~~--a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 141 LP--LEH--ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cc--ccc--CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceEE
Confidence 11 111 125667889999999988865433222233333333333322 445567888999999888888888888
Q ss_pred EeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc-ccccCC
Q 001176 1041 FDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGT 1107 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~-~~~~~~ 1107 (1132)
.|..++... .+..+ ..+ + .....+--+| -++.-+|....+.+..+|.++.. ..|.+|
T Consensus 215 idp~~~~ae-v~p~P----~~~---~-~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 215 IDPFAGHAE-VVPQP----NAL---K-AGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred cccccCCcc-eecCC----Ccc---c-ccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 888777332 22111 110 0 1111222233 55677776677777777776654 334443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=11 Score=41.69 Aligned_cols=157 Identities=11% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEE-EEcccceee-eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQI-YNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~ 955 (1132)
.+.+.++.+.| ++.+++++ ..|.+.. +| ..++.- ..-..-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 77666554 4565543 22 122211 1122334578999999998876654 567664323343331
Q ss_pred ccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001176 956 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1035 (1132)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d 1035 (1132)
=. ........ ....+..+++.+++..++++.+|.+..=.-.++.-........-......+.|..+++.+++| ..
T Consensus 248 W~--~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 248 WS--KPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred cc--cccCCccc--cccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CC
Confidence 11 11111000 013467889999998888888887654322333333322111113467888888777776655 47
Q ss_pred CcEEEEeC
Q 001176 1036 GAIGVFDA 1043 (1132)
Q Consensus 1036 g~i~vwd~ 1043 (1132)
|.|--|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.2 Score=51.11 Aligned_cols=151 Identities=7% Similarity=-0.041 Sum_probs=72.3
Q ss_pred ccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC--CCeEEEEeCCCCceeeee
Q 001176 508 IQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 508 ~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~ 580 (1132)
+.+++.||.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||+.+.+....-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 3677777765 346677776554322111111111111122356666666632211 256889998876543221
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC--
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-- 650 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 650 (1132)
.......-.++ ...++..++.||.+ ..+.+||..+.+....-..... .........++.+++.|+.+
T Consensus 423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~ 499 (534)
T PHA03098 423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGDKYE 499 (534)
T ss_pred CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCCcCC
Confidence 11111011122 22345555666532 2388899887665433221111 11111122367777777654
Q ss_pred ---CcEEEEEcCCc
Q 001176 651 ---NGIKILANSDG 661 (1132)
Q Consensus 651 ---g~i~iw~~~~~ 661 (1132)
..+.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46777877655
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.01 E-value=18 Score=44.18 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=55.2
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCC-eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
...|..+.++|+|+++|..+...|.|..+... .....+.+-...|.|=.+.= +..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc---------------------
Confidence 56789999999999999998766777666421 11112222222222222211 11111
Q ss_pred eeccccCCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCcc
Q 001176 916 KLKGHQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 916 ~l~~h~~~V~~l~~spd---g~~l~s~~~D~~i~iwd~~~~~ 954 (1132)
...+...|..+.|+|. +.+|+.-..|+++|+||+....
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1123345677788775 4677777888888888886543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.9 Score=49.99 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=91.6
Q ss_pred CCCCeEEEEeCCC------eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001176 415 PDGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 483 (1132)
Q Consensus 415 pdg~~las~~~dg------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~ 483 (1132)
.++..++.||.++ .+..||..+++-. ....+.........+. -+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 4667777776543 4677887765432 1111211111222222 3455 66677765 3577888877
Q ss_pred CeEEEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 484 GRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 484 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
++.... +....... +++. . ++.+.+.|+.+ +.+..||..+.+-...-..........+...+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 654321 11111111 1111 1 33666777632 45788887765433211111111111122235556666
Q ss_pred EecCCCC----CCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeE
Q 001176 556 CGTSKEG----ESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNML 620 (1132)
Q Consensus 556 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 620 (1132)
||.+... -..+.+||..+++....-.... ......+. .++..++.||.+ ..+.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 6542211 1348899988766433211111 10111222 256666666643 46788888776543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.6 Score=56.36 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=97.1
Q ss_pred CCCeeEEEEeeCCCEEEEee--C-CeEEEEECCCCeEE-----EEeeCC------CCCeEEEEEeCCCCCeEEEEeCCCc
Q 001176 837 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKVM-----TMFMSP------PPAATFLAFHPQDNNIIAIGMEDSS 902 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--d-g~i~vwd~~~~~~~-----~~~~~~------~~~i~~l~~sp~~~~~lasg~~dg~ 902 (1132)
...+..+...+|+...++.. + -.|..||+.+...- +-+..| ..-..++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45667778888988776664 3 36999998764321 112222 2335678888844455677788999
Q ss_pred EEEEEcccce-eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC
Q 001176 903 VQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 903 v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
|++..+.-.. ....+. .....+|++|+|.|+.++.|-..|++.-|...-..+....+..... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 9988765322 222222 4556899999999999999999999998877654322222211112 25689999988
Q ss_pred CCcEEEE
Q 001176 982 DQTHLLV 988 (1132)
Q Consensus 982 dg~~l~~ 988 (1132)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.55 E-value=24 Score=43.29 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=65.1
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCCeEEEEee--CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc--ccceeeeeec
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV--RVDEVKTKLK 918 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~--~~~~~~~~l~ 918 (1132)
.|+.|-..++.+|-...+++||+...++++... .-...|+.+.+ .+..+++|+..-.|..+-. ...+ +..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~-l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQ-LIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCe-EEEEe
Confidence 456677778888889999999998877665543 23456788887 4467777876666665443 3334 33332
Q ss_pred c--ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001176 919 G--HQNRITGLAFSPTLNALVSSGADAQLCMWSID 951 (1132)
Q Consensus 919 ~--h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~ 951 (1132)
. -...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 12236666654 45566666665666555443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.46 E-value=11 Score=39.36 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=123.4
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECC------CC-eEEEEecC-----CCCCeEEEEeeccCC----------cc
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 509 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~~----------~~ 509 (1132)
.-+.|+|+|.+. +-++...-+...+||.. .. ..+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778899999986 12 22334432 234567777653321 13
Q ss_pred EEEEEecCCeEEEEEcCCCCc-----eEEecCC-CC-eEEEEEEc--CCCCEEEEEecCCCCCCeEEEEeCCCCceee--
Q 001176 510 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP-GN-WCTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKR-- 578 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~-~~-~v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 578 (1132)
.++.+++||+|.-|...-... ...+... .+ -...+++. ..+.+|..+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997532222 1222211 22 33445544 34677777643 47789999855332210
Q ss_pred eecccc--C--CceEE--------EEE---eCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC----
Q 001176 579 TYSGFR--K--RSLGV--------VQF---DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 639 (1132)
Q Consensus 579 ~~~~~~--~--~~v~~--------~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 639 (1132)
.|.... . .+... +.+ .++...=+.|-.-|.|-+||.. ++.++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 111000 0 01111 111 1122222223345789999974 67787776655556667888765
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 640 --EGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 640 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
.|.+|+---.||+|..||..++ +.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667776667999999999988 54455544
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.39 E-value=4.9 Score=46.92 Aligned_cols=147 Identities=13% Similarity=0.215 Sum_probs=86.9
Q ss_pred CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 900 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
--.|+||++ +|+++.++.-..+++..+.|+.+ ..|+....||++++|++-....... ..|.......|..+.|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~-----svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESN-----SVGFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccc-----ccccccccCceeEEEE
Confidence 346889986 56767766555557889999865 4567788999999999876432111 0111111123444555
Q ss_pred CCCCcEEEEEeCCeEEEEeCCC----------------CceeecCCC-------------------------CCC-----
Q 001176 980 HNDQTHLLVVHESQISVYDSKL----------------ECSRSWSPK-------------------------DAL----- 1013 (1132)
Q Consensus 980 s~dg~~l~~~~d~~v~vwd~~~----------------~~~~~~~~~-------------------------~~h----- 1013 (1132)
..+|-.+.+.++..+.+-+... .+...+.++ ..|
T Consensus 136 f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 136 FHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred ecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 4455433332222222221100 000000000 001
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 1014 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 1014 ~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
...+..|..||+.++||.=..+|.|.+-+++..+.++.+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2456778899999999999999999999999888887776
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=19 Score=40.63 Aligned_cols=154 Identities=11% Similarity=0.052 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEccccee--eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccc
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~ 958 (1132)
...+..++ ++.+++++..-..++-||- |+. ...-......++++.|.+++..++.+ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34455667 6777766544332333432 221 11112234568899999999877755 55654 444444321000
Q ss_pred eeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001176 959 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1038 (1132)
Q Consensus 959 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i 1038 (1132)
......... .....+..+.|.+++..++++..|.+....-.++.-........-......+.|.++++.+++|. +|.|
T Consensus 316 ~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~i 393 (398)
T PLN00033 316 FDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVL 393 (398)
T ss_pred cceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEE
Confidence 001111100 01135788999999999999999988777655554333322222256788999988877777664 7776
Q ss_pred EEE
Q 001176 1039 GVF 1041 (1132)
Q Consensus 1039 ~vw 1041 (1132)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.59 E-value=15 Score=43.22 Aligned_cols=179 Identities=9% Similarity=0.047 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE-ECCCCe
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW-DVVAGR 485 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw-d~~~~~ 485 (1132)
.+..+.||.+..+|+. ..+|++++|++.....-............|..+.|..+|= .+.+. +|.+.+- +....
T Consensus 85 ~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~- 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICV-QKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP- 158 (829)
T ss_pred CeeeecccCCceEEEE-eccceEEEeecchhhhcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc-
Confidence 7889999987766554 6999999999875321110001122233455556655553 33333 4444443 32221
Q ss_pred EEEEecCC-CCCeEEEEeeccCC---ccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 486 KQYTFEGH-EAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 486 ~~~~~~~h-~~~v~~i~~~~~~~---~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
.++++..- .......+|.-..+ ...++-....-...++...... ....+......+..++.||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~-- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE-- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec--
Confidence 22222210 00011112211111 1111111100000111111111 11122223467888999999999987754
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
.|.|.+-+....+....+..........++|..
T Consensus 237 --~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 --TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred --CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 677888888877776666643322222344443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.19 E-value=3.7 Score=46.13 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=80.2
Q ss_pred CCeEEEEEeCCCCCeEEEEe-----------CCC-cEEEEEccc--ce--eeeeeccccCCeeEEEEcCCCCEEEEEcCC
Q 001176 879 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 942 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~spdg~~l~s~~~D 942 (1132)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| .+++ ...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 4567889988 788776542 223 677776443 32 223333333456889999998 5554 444
Q ss_pred CcEEEEECCCcccc---cceeeeCCCCC-CCCCCCceeEEECCCCcEEEE-EeC-------------------CeEEEEe
Q 001176 943 AQLCMWSIDKWEKL---KSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 998 (1132)
Q Consensus 943 ~~i~iwd~~~~~~~---~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~v~vwd 998 (1132)
...++.+....... ....+...... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33333344332111 11222322221 001134678999999987776 421 3345555
Q ss_pred CCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 999 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 999 ~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
..+.....+.. + ......++|+++|+++++-.
T Consensus 171 pdg~~~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAH--G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEec--C-cCCCccceECCCCCEEEEcc
Confidence 54444443322 2 23456799999999877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=8.9 Score=44.90 Aligned_cols=184 Identities=12% Similarity=-0.014 Sum_probs=87.8
Q ss_pred eCCCEEEEee-C-----CeEEEEECCCCeEEE--EeeCCCCCeEEEEEeCCCCCeEEEEeCC--CcEEEEEcccce--ee
Q 001176 847 KNDSYVMSAS-G-----GKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDE--VK 914 (1132)
Q Consensus 847 ~dg~~la~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~--~~ 914 (1132)
.++..+++|+ + .++..||..+.+-.. .+.........++ - ++.+.+.|+.+ ..+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556665 3 247788887654322 2221111122222 3 67888888864 357888876543 22
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCC---cEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 991 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 991 (1132)
..+....... .+..-+|+..+.||.++ .+..||..+..= ....... .. .... + +..-+|+..++|
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W---~~~~~m~-~~--r~~~-~-~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQW---QFGPSTY-YP--HYKS-C-ALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEE---EeCCCCC-Cc--cccc-e-EEEECCEEEEEC--
Confidence 2232111111 12233778888888653 467788765431 1111111 00 0111 1 223355555554
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCcc
Q 001176 992 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLR 1047 (1132)
Q Consensus 992 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-----g~i~vwd~~~~~ 1047 (1132)
|.+.+||...+.-...............+ .-+|+..++|+.+ .+|..||..+++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 45778888444333322211101112122 2477777777754 245666666543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.044 Score=59.45 Aligned_cols=244 Identities=14% Similarity=0.172 Sum_probs=135.3
Q ss_pred EEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEE
Q 001176 773 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 852 (1132)
Q Consensus 773 ~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~l 852 (1132)
....+.+.+..++.++.+..+..||-. |+.+.. .. . .+....+++..+|..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-----------------------gq~~le-~n---~-tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-----------------------GQVILE-LN---P-TGKALDMAWDKEGDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-----------------------cceecc-cC---C-chhHhhhhhccccchh
Confidence 345566777778888888887777632 111111 11 1 4566778888888877
Q ss_pred EEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEc
Q 001176 853 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 930 (1132)
Q Consensus 853 a~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 930 (1132)
++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++..+.+.+.+.-.|..++++++|.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 7665 68899999976432111111111222378999 88999999999999999988777666665699999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEE--EeC---CCCcee
Q 001176 931 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV--YDS---KLECSR 1005 (1132)
Q Consensus 931 pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v--wd~---~~~~~~ 1005 (1132)
+.+. .+.++.|..+.+-.-.+... ...........- ...-...=.|..-|..+...-.+...+ -.. +...-.
T Consensus 169 lEd~-vil~dcd~~L~v~~qegeta-~ltevggepdnm-~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval 245 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTLSVTTQEGETA-SLTEVGGEPDNM-DFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL 245 (615)
T ss_pred ccce-eeecCcHHHHHHhhhcccee-eeeeccCccchh-hhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence 8764 55566565443322222110 000000000000 000000012223333333322221111 111 111111
Q ss_pred ecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 1006 ~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
.+... .+.+.+..|--||.. .-+...|.|..-.+.+++....|
T Consensus 246 ~fq~~---~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 246 QFQEK---YGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred Eeeec---CCceeEEEEeccccc-cccccceeEEEEeccchHHHHHH
Confidence 22222 567888888888764 44666777777778877765443
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.74 E-value=2 Score=47.52 Aligned_cols=93 Identities=20% Similarity=0.118 Sum_probs=55.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEe---------CCCccee--cccCCCccccccccCCCCCCcEEEEeCCCC--CC
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFD---------AETLRFR--CRIGPSAYIPTYAVSSNTAHPLVIAPHPSE--PN 1081 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~ 1081 (1132)
..|..+..++.|..++..+.+|.+.++= +++|+.. |+...-. .. .........+..++|+|+. ..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~-~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ER-FFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ce-eeccCCceeeeeccccCCccCCc
Confidence 3455666666666666666666544421 2233221 1111000 00 0111234677889999964 56
Q ss_pred eEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1082 QIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1082 ~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
.|+.-+.|..||+|+++.....|..|++
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCC
Confidence 7888889999999999999888877654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.7 Score=52.80 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=90.5
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-----EEecC------CCCCeEEEEeeccCCccEEEEEecCCeE
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFEG------HEAPVYSVCPHHKESIQFIFSTAIDGKI 520 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-----~~~~~------h~~~v~~i~~~~~~~~~~l~s~s~dg~i 520 (1132)
+|..+...+|+....++..+.+-.|..+|+++-..- .-|.. ......++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566666777877545555566668999998753211 11111 223345566777644 456677889999
Q ss_pred EEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc---cCCceEEEEEeCCC
Q 001176 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTTR 597 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~ 597 (1132)
++..+........-..-....++++|+|.|+.++.+- ..|++.-|... ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 8886654333322223345789999999999999984 47778777654 3333333322 22368889998776
Q ss_pred CEEEE
Q 001176 598 NRFLA 602 (1132)
Q Consensus 598 ~~l~~ 602 (1132)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 66665
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.58 E-value=27 Score=39.19 Aligned_cols=209 Identities=12% Similarity=0.087 Sum_probs=103.5
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEE---------cccceee--eee---------ccccCCeeEEEEcCCC---CEE
Q 001176 880 AATFLAFHPQDNNIIAIGMEDSSVQIYN---------VRVDEVK--TKL---------KGHQNRITGLAFSPTL---NAL 936 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~~dg~v~iwd---------~~~~~~~--~~l---------~~h~~~V~~l~~spdg---~~l 936 (1132)
.|..+..++ .|..+|-.+.+|.+.++= +++|+.. .+. ....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 466778888 888999888998655432 1223211 111 0111235678899975 678
Q ss_pred EEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCCceeecCCCCCCC
Q 001176 937 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSPKDALP 1014 (1132)
Q Consensus 937 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~ 1014 (1132)
..-+.|.+|++||+.....+- ......++.. ..+.-+.|.....++... .-+.|.=|..-++....+ .
T Consensus 184 ~iL~sdnviRiy~lS~~tely--lqpgepgRS~--tn~Si~sFGe~~~~~l~~~~a~~~V~~~Esv~Nd~~~l------~ 253 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELY--LQPGEPGRSP--TNVSILSFGEEESLVLNKGRAYTAVLGEEAVANDFGPL------A 253 (741)
T ss_pred EEEecCcEEEEEecCCcchhh--ccCCCcCCCC--ccceeeccCCcceeeeccCcccccccCchhhccCcccc------c
Confidence 888899999999998765431 2222333332 222333444333333331 223344443311111100 0
Q ss_pred CCeEEEEE---ccCCC----EEEEEecCC---cEEEEeCCCcceecccCCCccccccccCCCCC---CcEEEEeCCCCCC
Q 001176 1015 APISSAIY---SCDGL----LVYAGFCDG---AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA---HPLVIAPHPSEPN 1081 (1132)
Q Consensus 1015 ~~i~~i~~---s~dg~----~las~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~ 1081 (1132)
..-.++.- ++... -+..-.+.| .|+|--......+..++.+-++... .|.. .--++...|.-+.
T Consensus 254 ~S~ktL~~~nSs~k~E~iE~p~~~L~EnG~~~NIyi~~~~~~~~~~~LQGPl~~~p~---aeDnyg~~~CaL~~lpS~p~ 330 (741)
T KOG4460|consen 254 ASPKTLFGQNSSGKDEVVEYPLYILYENGETFNIYISLLHSPGNIGKLQGPLPMHPA---AEDNYGYDACALLCLPSVPN 330 (741)
T ss_pred cCccceeeecccccceeEecceeeeeccCcceeEEEEEccCcchhhhhcCCccCCcc---cccccchhhheeEeecCCCC
Confidence 00111111 11111 122233445 5666655554555555544333221 2211 1112333455678
Q ss_pred eEEEEeCCCcEEEEecCCCcc
Q 001176 1082 QIALGMSDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1082 ~l~s~~~Dg~i~vW~~~~~~~ 1102 (1132)
+|+++...|.+..=-+-.++.
T Consensus 331 ilViA~S~G~L~h~~L~e~e~ 351 (741)
T KOG4460|consen 331 ILVIATSSGMLYHCVLLEGEE 351 (741)
T ss_pred eEEEEecCCceeeeeeecccc
Confidence 999999999988766666663
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.53 E-value=2.4 Score=46.10 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
.+++|.++.||+|.+ ++|+--.|.+|.+.+....+....... ..+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 567999999999998 899999999999999854433221000 01223456889999866 6677
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
.....| +.+|.+..... .....+.|.-.|.-..|.++.+-.+++|+-..+++.=+-+.++
T Consensus 128 ~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 776666 77887765432 1223556888999999999988433444434444444444433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.18 Score=58.82 Aligned_cols=179 Identities=12% Similarity=0.200 Sum_probs=102.0
Q ss_pred CeEEEEECC--CCeEEEEee-----CCCCCeEEEEEeCC--CCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEE
Q 001176 858 GKVSLFNMM--TFKVMTMFM-----SPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 858 g~i~vwd~~--~~~~~~~~~-----~~~~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 928 (1132)
|.+.|||++ .|+....+. .....+.-+.|.|- +.-++..+..++.+++....+... ..+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 677888875 343322221 12223344444431 456777888889998877655432 44566877665544
Q ss_pred -----------EcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-------Cc--EEEE
Q 001176 929 -----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-------QT--HLLV 988 (1132)
Q Consensus 929 -----------~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------g~--~l~~ 988 (1132)
.||||+.+|+++.||.+++|.+.-..+....++..-..|.. .+-.|.-+... +. ++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999886544444445544444432 11122223322 22 2333
Q ss_pred Ee--CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC------------EEEEEecCCcEEEEeCCC
Q 001176 989 VH--ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------LVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 989 ~~--d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~------------~las~~~dg~i~vwd~~~ 1045 (1132)
+. +..+++|.. ..+|+..+. ...|..+. -+||+ .++.-+-|++|.+|.-..
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 33 456888887 566653222 23444444 34443 233456688888886543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.01 E-value=5.8 Score=44.60 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=78.9
Q ss_pred CeeEEEEeeCCCEEEEee------------CC-eEEEEECCC--Ce--EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 001176 839 SAACIALSKNDSYVMSAS------------GG-KVSLFNMMT--FK--VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s------------dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 901 (1132)
....++|.++|+++++-. .+ .|.+++-.+ ++ ....+.........+++.+ ++ +++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 457899999999887742 23 677776432 32 2234443444568899998 77 444 44443
Q ss_pred cEEEEEccc-----ce---eeeeecc----ccCCeeEEEEcCCCCEEEEEcCC-------------------CcEEEEEC
Q 001176 902 SVQIYNVRV-----DE---VKTKLKG----HQNRITGLAFSPTLNALVSSGAD-------------------AQLCMWSI 950 (1132)
Q Consensus 902 ~v~iwd~~~-----~~---~~~~l~~----h~~~V~~l~~spdg~~l~s~~~D-------------------~~i~iwd~ 950 (1132)
..++.|... ++ .+..+.. +......++|.|||.+.++.+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333434421 11 1122322 23447789999999987766631 33455555
Q ss_pred CCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 951 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
++++.. .+ ..+. .....++|+++|+++++
T Consensus 172 dg~~~e---~~--a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKLR---VV--AHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeEE---EE--ecCc----CCCccceECCCCCEEEE
Confidence 543310 11 1221 34578999999998877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.9 Score=50.68 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------cce--ecc-cCCCccccccccCCCCCCcEEEEeCCCC-
Q 001176 1014 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRF--RCR-IGPSAYIPTYAVSSNTAHPLVIAPHPSE- 1079 (1132)
Q Consensus 1014 ~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~----------~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~- 1079 (1132)
...|..+.++|+|++||..+..| |.|-.+.. |+. .|+ +.... ......++..+..+.|+|..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~---~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE---RFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech---hhccCCCCceEEEEEEcCCCC
Confidence 45789999999999999988765 44433321 111 111 11111 11123567899999999952
Q ss_pred -CCeEEEEeCCCcEEEEecCCCc
Q 001176 1080 -PNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1080 -~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+..|+.=+.|+++|+||+....
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCC
Confidence 5788899999999999998755
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=12 Score=43.99 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=86.8
Q ss_pred EEEEEcCCC-----cEEEEECCCCeEEE--EecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEcCCCCceEEecC
Q 001176 466 CIVTCGDDK-----MIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~ 536 (1132)
+++.||.++ .+..||..+++... .+.........+.. ++.+.+.|+.+ ..+..||..+..-...-..
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455565432 46677877765432 11111111112221 33667777754 3577787654432221111
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
........+..-+|+..+.||.+. ....+..||..+.+....-.-... .....+..-++...+.| |.+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEEC---CceEEecCCC
Confidence 111111122234666666666532 235678899877654332111111 11111222344444445 3467889887
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
.+....-..... ....-+..-++++.++|+.+ ..+..||..++
T Consensus 425 ~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 425 NTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 665543322211 11112222367777777754 35677776655
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=30 Score=38.23 Aligned_cols=152 Identities=7% Similarity=-0.067 Sum_probs=81.3
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
...+.++.+.++ +. ++..+..|.+..= .+.+.. ..........++++.+.++++.++++. .+.+++=..
T Consensus 172 ~g~~~~i~~~~~--g~-~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPD--GK-YVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCC--Ce-EEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 456777877653 34 4455555654421 122222 122233445788999999998877653 344433223
Q ss_pred CCCceeeeeccc---cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC-CCCCcceEEEcCCCCEEEEE
Q 001176 572 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 572 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 647 (1132)
..|..-...... ....+..+.+.+++.. +.++.+|.+. .....++.-....... -....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 1124677888887764 4555677665 3455555544443211 112466777776666554 5
Q ss_pred eCCCcEEEEE
Q 001176 648 TSDNGIKILA 657 (1132)
Q Consensus 648 ~~dg~i~iw~ 657 (1132)
+..|.|..|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 6678887765
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=90.77 E-value=30 Score=38.23 Aligned_cols=188 Identities=12% Similarity=0.150 Sum_probs=104.5
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec--cCCccE--EEEEe-cC---CeEEEEEcCCCCc-eEEecC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH--KESIQF--IFSTA-ID---GKIKAWLYDYLGS-RVDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~~~--l~s~s-~d---g~i~~wd~~~~~~-~~~~~~ 536 (1132)
+|+....++-+.+||+ .|+.+..+. .+..+.+.+.. .-+|.. |+.++ .+ .+|++|.++.... +..+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778889999995 666666664 23444443321 111221 33333 32 5799998864322 222221
Q ss_pred -------CCCeEEEEEE--cC-CCCEEEEEecCCCCCCeEEEEeCC---CC----ceeeeeccccCCceEEEEEeCCCCE
Q 001176 537 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 537 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1132)
....++.+|+ ++ +|.+.+.... ++|.+..|.+. .+ ++++.|.... .+..|.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1224667776 33 4665554442 35667777653 33 4677787644 5888999988899
Q ss_pred EEEEEcCCeEEEEECCC-----CeeEEEEeCCCCCCCcceEEEcC--CCC--EEEEEeCCCcEEEEEcCCc
Q 001176 600 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFNK--EGS--LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~~~--~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+.+-++.-|.-|+.+. ++.+.......-...|-.+++-. +++ +|++.-.+++..+|+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888762 22333333322234566677643 433 4444445778999997654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=90.29 E-value=32 Score=37.83 Aligned_cols=108 Identities=8% Similarity=-0.033 Sum_probs=51.6
Q ss_pred EEEEEcCC-----CcEEEEECCCCeEE---EEecCCCCCe--EEEEeeccCCccEEEEEec-----CCeEEEEEcCCCCc
Q 001176 466 CIVTCGDD-----KMIKVWDVVAGRKQ---YTFEGHEAPV--YSVCPHHKESIQFIFSTAI-----DGKIKAWLYDYLGS 530 (1132)
Q Consensus 466 ~l~s~~~d-----g~v~vwd~~~~~~~---~~~~~h~~~v--~~i~~~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~ 530 (1132)
+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 56666654 35667777666531 2222111111 112221 2356666664 23577788776543
Q ss_pred eEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 531 RVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 531 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
...-... .......+...+++..+.++.+......+.+||+.+.+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3221111 112222333445666667665322223367889887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.27 E-value=24 Score=36.26 Aligned_cols=241 Identities=13% Similarity=0.100 Sum_probs=139.7
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
...-..++-+|||..-.++. .+.|--.|-.+|+....--+....-..|...| ++..-++-+.. -|.-.|-++.+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEE
Confidence 34456788899998888887 67788888888888766666666677888888 44444332222 34444544443211
Q ss_pred -e--eccccCCeeEEEEcCCCCEEEEEcCC---------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 916 -K--LKGHQNRITGLAFSPTLNALVSSGAD---------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 916 -~--l~~h~~~V~~l~~spdg~~l~s~~~D---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
. .+.-.+......|.+.|++-+|+... +.|++|+...+ .....++..|||
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------~gpyGi~atpdG 200 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------GGPYGICATPDG 200 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------CCCcceEECCCC
Confidence 1 22234457778899999988887632 34555554432 345678889999
Q ss_pred cEEEEE-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccc
Q 001176 984 THLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1062 (1132)
Q Consensus 984 ~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1062 (1132)
..-+++ .+..|...|........+....+....-..+--+|.|+.-++-...+.+..+|-..-.-+ .+. +|
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eyp----LP--- 272 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYP----LP--- 272 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eee----CC---
Confidence 877774 556666666622232333322222233444555677887777777777877777654321 111 22
Q ss_pred cCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc-ccccCCC
Q 001176 1063 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGTP 1108 (1132)
Q Consensus 1063 ~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~-~~~~~~~ 1108 (1132)
+......++.... .++.-++--.-|.|.-+|..+.. .++..++
T Consensus 273 --gs~arpys~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 273 --GSKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred --CCCCCcceeeecc-CCcEEeeccccCceeecCcccceEEEecCCC
Confidence 2222333343333 33455545555666666666644 3444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=90.17 E-value=6.4 Score=45.47 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=55.6
Q ss_pred EECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC
Q 001176 863 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942 (1132)
Q Consensus 863 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D 942 (1132)
.|+-.|.....+ .|.+.|--+.... .+..|..-...-.+.++|+.+.+..-.+. -.+-+.|-|....++.-+.|
T Consensus 323 vdli~g~~~~~i-nh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFI-NHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccc-cccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 444444443333 4888888888877 55556555555678888887654322221 23457899988888888888
Q ss_pred CcEEEEECCCccc
Q 001176 943 AQLCMWSIDKWEK 955 (1132)
Q Consensus 943 ~~i~iwd~~~~~~ 955 (1132)
+....|+++..+.
T Consensus 397 nl~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQ 409 (1636)
T ss_pred ceEEEecCCcchh
Confidence 7555556766554
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.03 E-value=9 Score=37.45 Aligned_cols=147 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 507 SIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 507 ~~~~l~s~s~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
+|.++.+.+.-| .|++||+++++...........+..=-...-|+++..-.. +++.-..+|.++.+++..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 346777776544 5999999988776654433211111111112333332222 46778889998888877766544
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC---CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG---LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+ ..+ ..|+..++.++....++.-|..+.....++..... ...++.+.|- ||...|-.-.+..|...+..+|
T Consensus 132 eG--WgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 EG--WGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred cc--eee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 32 222 34566677776667788888776554444432211 1223344442 5655555545555555566655
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=89.98 E-value=6.9 Score=44.53 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=84.1
Q ss_pred CCeeEEEEeeCCCEEEEee----CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCC---CC-CeEEEEeCCCcEEEEEcc
Q 001176 838 ESAACIALSKNDSYVMSAS----GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DN-NIIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~---~~-~~lasg~~dg~v~iwd~~ 909 (1132)
.++..++|. ||+.++-.. +|.+++=|- +.+..| ..|..+.|.|- +. .+|| .-....|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEE-EeccceEEEEEec
Confidence 467888885 666554332 344443332 223333 46888999883 12 4555 4566789999876
Q ss_pred c-----ceeeeeecccc---CC--eeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 910 V-----DEVKTKLKGHQ---NR--ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 910 ~-----~~~~~~l~~h~---~~--V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
. ++.+.....+- -+ -.++.|+|....|+.-.....-.+.++....... -....+. +-|.+.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV---kaDi~~~----G~IhCACW 163 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV---KADIKTS----GLIHCACW 163 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE---EEeccCC----ceEEEEEe
Confidence 2 22222211111 11 2357899998888776655544566665432111 1111111 56899999
Q ss_pred CCCCcEEEEEeCCe--EEEEeC
Q 001176 980 HNDQTHLLVVHESQ--ISVYDS 999 (1132)
Q Consensus 980 s~dg~~l~~~~d~~--v~vwd~ 999 (1132)
..||++|+++-+.. -++||-
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecC
Confidence 99999999965444 568887
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.1 Score=31.44 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=27.0
Q ss_pred cCeEEEEEcCC-C--CeEEEEeCCCeEEEEEecCC
Q 001176 406 ISVNRCVWGPD-G--LMLGVAFSKHIVHLYTYNPT 437 (1132)
Q Consensus 406 ~~V~~v~~spd-g--~~las~~~dg~i~iwd~~~~ 437 (1132)
+.|.++.|||+ + ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58999888999999999863
|
It contains a characteristic DLL sequence motif. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=89.78 E-value=47 Score=43.27 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=85.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|-..++.|.-+|+|.+ +=. .|+.++.||....... .. -..-..+++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~Wk---------~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTARWK---------PP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccceec---------CC----------CCcccchhhhhcccCCCceEe
Confidence 4445666777777764 332 4677888877655322 10 011233455555556676665
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC------eE--EEEecCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 493 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~------~~--~~~~~~h 493 (1132)
.++. .+-|+..+.... ..-..+.+...+++|.- .+.++.....+.+|++... +. ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 133444443221 11235777888899983 4667777777899998653 11 1233333
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
.....+|.+++ ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 34566666643 4688888899888777654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.99 Score=31.57 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCC--CeEEEEeCCCcEEEEEccc
Q 001176 879 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 879 ~~i~~l~~sp~~~--~~lasg~~dg~v~iwd~~~ 910 (1132)
+.|.++.|+|..+ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6999998899999999985
|
It contains a characteristic DLL sequence motif. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=41 Score=37.99 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=19.7
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 609 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+.+||..+.+....-..+.. .-...+..-++.++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654322221111 11223344467777777753
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.33 E-value=29 Score=39.64 Aligned_cols=275 Identities=16% Similarity=0.112 Sum_probs=134.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....|.++.|.-.|. +-+|+.|| +..+|..+++.++...- .....|..+..+-.|+ |.
T Consensus 163 ~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~-LW 220 (671)
T COG3292 163 KDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR-LW 220 (671)
T ss_pred cCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc-EE
Confidence 567899999999997 44556555 56677777766542110 1113455555554554 66
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cCCC--CCeE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHE--APVY 498 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~--~~v~ 498 (1132)
+|+.+| |.+.+.++.+....... --.+.|..+.-..+|. +-.|+..|-.+. ....+...... +-|. ..|.
T Consensus 221 VGTdqG-v~~~e~~G~~~sn~~~~--lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 221 VGTDQG-VYLQEAEGWRASNWGPM--LPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEeccc-eEEEchhhccccccCCC--CcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccc
Confidence 777777 77777666322111000 1233454444444444 555665554332 22332222222 2222 2333
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC--CCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
++.. +.+ .-|-+++.+|.+++=+-+-..........+..+..++.+| .+..+-... ..+.+.+-+..+|..
T Consensus 294 sL~~--D~d-GsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTD-GSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccC-CCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 3333 333 2456666666665543221111111111111111122222 111111111 122355556666777
Q ss_pred eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001176 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1132)
++.........|+..++..++ .+-.|+...-+..|+..+ +.......+.. .+.|..+.=.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEec
Confidence 666554444467777777744 455566554566676665 33333332221 24677777788887 777888877653
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.56 Score=55.04 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=93.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC--CccccccceeeeecccccccccccccCCCCcCeEEEEEc---CC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG---PD 416 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---pd 416 (1132)
..++|-.+.|-.....-++ -.-|...||+++- |+....-.+++ ...-...+.-|.|. ++
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp~~~~ 194 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCPIAVN 194 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecccccc
Confidence 4567777777542211111 2236788998763 44332212211 11222333444454 46
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE-----------ecCCCcEEEEEEcCCCcEEEEECC---
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-----------AHPNKQLCIVTCGDDKMIKVWDVV--- 482 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-----------s~d~~~~~l~s~~~dg~v~vwd~~--- 482 (1132)
..++..+-.+++|++..++.... ..+.+|..++..++| ||||+ .+++...||.++.|.+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeeeec
Confidence 77888888889988887776433 135568877777664 78998 88999999988888653
Q ss_pred --CCeEEEEecCCC-CCeEEEEeeccCC-------ccEEEEEec-CCeEEEEEcCCCCce
Q 001176 483 --AGRKQYTFEGHE-APVYSVCPHHKES-------IQFIFSTAI-DGKIKAWLYDYLGSR 531 (1132)
Q Consensus 483 --~~~~~~~~~~h~-~~v~~i~~~~~~~-------~~~l~s~s~-dg~i~~wd~~~~~~~ 531 (1132)
.-++++.++.|. .+-.|.-++.... -.++++++. ...+++|.-..-++.
T Consensus 269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 234455666666 2222221221110 123444443 456888865544443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.04 E-value=13 Score=41.45 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=90.6
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC------CccEEEEEecCCeEEEEEcCCCC
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE------SIQFIFSTAIDGKIKAWLYDYLG 529 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~ 529 (1132)
+-...+...+++..|+....++-.|++.|+.+..+.-|..- -+.+.|.. +.+.|+ |-.+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 33334444456667778888999999999999998877765 34454432 123444 4445555556666554
Q ss_pred ceEEecCCCCeEEEEEEc----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc
Q 001176 530 SRVDYDAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1132)
...........++.-.|| ...-++++++. .|-|++||--.-+....+.+..+ .|..+..+.+|.++++.+.
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK 623 (776)
T ss_pred CceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec
Confidence 322222111122222222 23347888775 55599999554444445555555 7888999999999888764
Q ss_pred CCeEEEEECC
Q 001176 606 EFQIKFWDMD 615 (1132)
Q Consensus 606 dg~i~iwd~~ 615 (1132)
..+.+-|+.
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 355555543
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=56 Score=38.70 Aligned_cols=390 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCCC-------CcCeEEEEEcC-----
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA-------AISVNRCVWGP----- 415 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~sp----- 415 (1132)
++..|.|+ .++.+..++.+.|+.++. ...... ...+ ...|.+++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCeEEEEeCCCe------EEEEEecCCCceeeeeeeec------ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 416 DGLMLGVAFSKHI------VHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 416 dg~~las~~~dg~------i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
+...+|.--.+.. .+-|+...+........-.. +..+..-+..-.... .++.++ ++.+.+-+...
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~-~~~i~y~~~~~ 185 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGG-ENIIIYKNHLI 185 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEE-SSEEEEEE---
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEEC-CEEEEEecccc
Q ss_pred C---eEEEEecCC----CCCeEEEEe-----eccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCC-CCeEEEEEEcC
Q 001176 484 G---RKQYTFEGH----EAPVYSVCP-----HHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAP-GNWCTMMAYSA 548 (1132)
Q Consensus 484 ~---~~~~~~~~h----~~~v~~i~~-----~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~-~~~v~~~~~s~ 548 (1132)
+ .....+... ..-+.+.+. ....++..++.+..+|.+....+.... ......+. .....++++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~ 265 (504)
T PF10433_consen 186 GSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK 265 (504)
T ss_dssp ---TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES
T ss_pred cccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc
Q ss_pred CC-CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe----CCCC------EEEEEE---cCCeEEEEEC
Q 001176 549 DG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD----TTRN------RFLAAG---DEFQIKFWDM 614 (1132)
Q Consensus 549 ~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~------~l~~~~---~dg~i~iwd~ 614 (1132)
+| .+++.++. .+|+.+..|....-+.+.++.... +|..+++. .... .+++++ .+|.+++..-
T Consensus 266 ~g~d~lf~gs~--~gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 266 NGGDYLFVGSE--FGDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp TT--EEEEEES--SS-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCCEEEEEEEe--cCCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCee--EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC-CcceeeeeccccccccccCCCCCCCCCccccc
Q 001176 615 DNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS-DGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 691 (1132)
Q Consensus 615 ~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1132)
.-+-. ......-.+...++.+....+....+..+....-+++.+. ..
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d------------------------------ 391 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGD------------------------------ 391 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES---------------------------------
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEeccc------------------------------
Q ss_pred ccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccc
Q 001176 692 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 771 (1132)
Q Consensus 692 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1132)
..+.
T Consensus 392 ----------------------------------------------------------------------------~~e~ 395 (504)
T PF10433_consen 392 ----------------------------------------------------------------------------DGEE 395 (504)
T ss_dssp -----------------------------------------------------------------------------SSE
T ss_pred ----------------------------------------------------------------------------CCcc
Q ss_pred eEEE---EEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 772 VVRL---IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 772 i~~~---~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
+..+ .|..+...|+++.-.+...+ .+....+++.+...+.....-... .+..-..|...+
T Consensus 396 ~~e~~~~~f~~~~~Tl~~~~~~~~~iv-------------QVt~~~i~l~~~~~~~~~~~w~~~----~~~~I~~a~~~~ 458 (504)
T PF10433_consen 396 VEEVEEDGFDTDEPTLAAGNVGDGRIV-------------QVTPKGIRLIDLEDGKLTQEWKPP----AGSIIVAASIND 458 (504)
T ss_dssp EEEE---TS-SSS-EEEEEEETTTEEE-------------EEESSEEEEEESSSTSEEEEEE-T----TS---SEEEESS
T ss_pred hhhhhhccCCCCCCCeEEEEcCCCeEE-------------EEecCeEEEEECCCCeEEEEEeCC----CCCeEEEEEECC
Q ss_pred CCEEEEeeCCeEEEEECCCCeEEEEeeCC-----CCCeEEEEEeC
Q 001176 849 DSYVMSASGGKVSLFNMMTFKVMTMFMSP-----PPAATFLAFHP 888 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp 888 (1132)
+..+++.+++.+..+.+............ ...|.|+...|
T Consensus 459 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 459 PQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
|
... |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.89 E-value=21 Score=39.22 Aligned_cols=181 Identities=10% Similarity=-0.004 Sum_probs=98.5
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~ 1003 (1132)
+.+-|...++.|++. ..|.+.=|.++....-....... .. .+++.++.||+|.+.+|+ -.+++|.+++..+..
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm--~d---~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDM--DD---KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeee--cC---CCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 445554444444433 34446666665543111101111 11 157899999999999999 579999999882222
Q ss_pred eeec--CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC
Q 001176 1004 SRSW--SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1004 ~~~~--~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 1081 (1132)
.... .....-+..|....|+.+ .-+|..+.. -+.+|.+...+.--+ .+..|+..|--..|.++..-
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslR----------lVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLR----------LVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhh----------hhhhcccCccEEEEccccce
Confidence 1111 111111456888999876 556666643 467776655433211 23467788888999984444
Q ss_pred eEEEEe-CCCcEEEEecCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 001176 1082 QIALGM-SDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTG 1126 (1132)
Q Consensus 1082 ~l~s~~-~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1126 (1132)
.|++.+ ..+.+.=+-++++. ...-|.++.+ +|+.|++++|--
T Consensus 168 ~LL~t~~~~n~lnpf~~~~~~--v~kLPkfe~~-~p~~~~~~kp~l 210 (657)
T KOG2377|consen 168 ILLSTTVLENVLNPFHFRAGT--MSKLPKFEIE-LPAAPKSTKPSL 210 (657)
T ss_pred EeeeccccccccccEEEeece--eeeccceeec-CCCCccCCCCcc
Confidence 455555 45555555665544 2222233332 444455554433
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.83 E-value=34 Score=36.77 Aligned_cols=194 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred eeEEEEeeCCCEEEEeeCC-------------eEEEEECCCCeEEEEee------CCCCCeEEEEEeCCCC----CeEEE
Q 001176 840 AACIALSKNDSYVMSASGG-------------KVSLFNMMTFKVMTMFM------SPPPAATFLAFHPQDN----NIIAI 896 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~sdg-------------~i~vwd~~~~~~~~~~~------~~~~~i~~l~~sp~~~----~~las 896 (1132)
|..+...+++++-+.=+.. +|.+||+.+.+.++++. ...+....+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Q ss_pred EeCC-CcEEEEEcccceeeeeeccccCC-------------------eeEEEEcC---CCCEEEEEcCCCcEEEEECCCc
Q 001176 897 GMED-SSVQIYNVRVDEVKTKLKGHQNR-------------------ITGLAFSP---TLNALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 897 g~~d-g~v~iwd~~~~~~~~~l~~h~~~-------------------V~~l~~sp---dg~~l~s~~~D~~i~iwd~~~~ 953 (1132)
+... +.|.|+|+.+++..+.+..+... +.+++.+| ++++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Q ss_pred ccccceeeeCC------CCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC----CceeecCCCCCCCCCeEEEEE
Q 001176 954 EKLKSRFIQAP------AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISSAIY 1022 (1132)
Q Consensus 954 ~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~----~~~~~~~~~~~h~~~i~~i~~ 1022 (1132)
........... ..--........++++++|..+++ ...+.|..|+..+ +....+......-....++.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Q ss_pred cc--CCCEEEEEec
Q 001176 1023 SC--DGLLVYAGFC 1034 (1132)
Q Consensus 1023 s~--dg~~las~~~ 1034 (1132)
.+ +|.+.+..+.
T Consensus 242 ~~~~~g~L~v~snr 255 (287)
T PF03022_consen 242 DPEGDGYLWVLSNR 255 (287)
T ss_dssp -T--TS-EEEEE-S
T ss_pred ccccCceEEEEECc
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.47 E-value=13 Score=33.91 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcc--------cceeeeeeccccCCeeEEEEcC----CCCEEEEEcCCCcEEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR--------VDEVKTKLKGHQNRITGLAFSP----TLNALVSSGADAQLCMW 948 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~--------~~~~~~~l~~h~~~V~~l~~sp----dg~~l~s~~~D~~i~iw 948 (1132)
|+.-.|.. ....|+.++.-|.|.|++.. ....+..+. -...|++|+-.+ +++-++..+....+..|
T Consensus 1 VaiGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 1 VAIGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CeEEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Q ss_pred ECCCcccccceeeeCCCCCCCCCCCceeEEE----CCCCcEEEEEeCCeEEEEeCCCCce
Q 001176 949 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQF----HNDQTHLLVVHESQISVYDSKLECS 1004 (1132)
Q Consensus 949 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~dg~~l~~~~d~~v~vwd~~~~~~ 1004 (1132)
|+.....+-.+.+. +.+.++.+ ..+..+++++.+..|.-||..+..+
T Consensus 79 DV~~N~d~Fyke~~---------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 79 DVENNSDLFYKEVP---------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EcccCchhhhhhCc---------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.46 E-value=44 Score=36.81 Aligned_cols=165 Identities=14% Similarity=0.143 Sum_probs=90.8
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCc------EEEEEccc--c--eee-----eeeccccC--------CeeEEEEcCCCC
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D--EVK-----TKLKGHQN--------RITGLAFSPTLN 934 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spdg~ 934 (1132)
-+.+..|.+.+.++. +++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788999863454 445566666 66555543 1 001 11111111 234788888898
Q ss_pred EEEEEcCC------CcEEEEECCCcccccceeeeCCC-------CCCCCCCCceeEEECCCCcEEEEE------eCC--e
Q 001176 935 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 993 (1132)
Q Consensus 935 ~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~--~ 993 (1132)
++++.-.+ ..|+.++.. +.......+.... ..........+++++|||+.|++. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 4432222111110 111223567899999999955542 132 1
Q ss_pred -------EEE--EeCC--CCceeecCCCCC------CCCCeEEEEEccCCCEEEEEe-----cCCcEEEEeCC
Q 001176 994 -------ISV--YDSK--LECSRSWSPKDA------LPAPISSAIYSCDGLLVYAGF-----CDGAIGVFDAE 1044 (1132)
Q Consensus 994 -------v~v--wd~~--~~~~~~~~~~~~------h~~~i~~i~~s~dg~~las~~-----~dg~i~vwd~~ 1044 (1132)
+++ ||.. +.....+..... ....|+.+.+-+|+++|+.== ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 4442 222333221111 356889999999999877532 23455555443
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=88.35 E-value=82 Score=39.86 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=17.0
Q ss_pred cccceEEEEEecCCceEEeeccc
Q 001176 768 AASKVVRLIYTNSGLSLLALASN 790 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~d 790 (1132)
+-+.+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 45667899999999866665444
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.35 E-value=23 Score=42.42 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=76.2
Q ss_pred CeEEEEEcC--CCCeEEEEeCCCeEEEEEecC-------C----------CceeeeeeeecccCCEEEEEEe--cCCCcE
Q 001176 407 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQL 465 (1132)
Q Consensus 407 ~V~~v~~sp--dg~~las~~~dg~i~iwd~~~-------~----------~~~~~~~~l~~h~~~v~~v~~s--~d~~~~ 465 (1132)
.|+.|...- +...|+.|.+||.|.+|.+++ . ..+.+...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 556899999999999997632 0 0011222222 23478999998 6555
Q ss_pred EEEEEcCCCcEEEEECCCC--eEEE-EecCCCCCeEEEEeeccCC---cc-EEEEEecCCeEEEEEc
Q 001176 466 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 525 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~--~~~~-~~~~h~~~v~~i~~~~~~~---~~-~l~s~s~dg~i~~wd~ 525 (1132)
+||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888754432 2111 1112667899999987652 22 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=2.3 Score=46.13 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=94.6
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEE-EEee-C-CC---CCeE-EEEEeCCCCCeEEEEeCCCcEEEE-Ec
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFM-S-PP---PAAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 908 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~~-~-~~---~~i~-~l~~sp~~~~~lasg~~dg~v~iw-d~ 908 (1132)
...+..+-+.|||+.+.+-+..++.++++.+.... +.+. . +. ..|+ ++..-. +|.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 56788889999999999888889999998765432 1111 1 11 1233 223233 67777889999998877 44
Q ss_pred ccc-e----eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 909 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 909 ~~~-~----~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
..+ . .++.++-...++..+.--...+-+++-...|++.++.....+.+. .+... .....+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL---~~~~~------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL---FERAY------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee---hhhhh------cCcceeeeCccc
Confidence 332 1 112222222334333322233457777788888877654433111 11111 245678999999
Q ss_pred cEEEEEeCCeEEEEeC
Q 001176 984 THLLVVHESQISVYDS 999 (1132)
Q Consensus 984 ~~l~~~~d~~v~vwd~ 999 (1132)
.++++-+.|.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988999999988
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.75 E-value=2.1 Score=46.33 Aligned_cols=171 Identities=11% Similarity=0.094 Sum_probs=94.8
Q ss_pred eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-e-ccccC----Cee-EEEEcCCCCEEEEEcC
Q 001176 869 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-L-KGHQN----RIT-GLAFSPTLNALVSSGA 941 (1132)
Q Consensus 869 ~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l-~~h~~----~V~-~l~~spdg~~l~s~~~ 941 (1132)
+.+..+......+..+-..| +|+.|..-+. ..+.++++.+.....+ + ....+ .|+ .+..-..|..|..+..
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 34444555667788899999 8888877655 5789998876543221 1 11111 122 2222335667888899
Q ss_pred CCcEEEE-ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCeEE
Q 001176 942 DAQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISS 1019 (1132)
Q Consensus 942 D~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~ 1019 (1132)
||.|.-| |+..........++..+-. ..++..+.-..+.+-++. ...|++.++..+......+... -..+.-
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCcce
Confidence 9998888 4433222111111111100 012222221222233333 4567777776643333332222 235677
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 1020 AIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 1020 i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
++|||.+.+|++-. .|.|+++.+++-..
T Consensus 363 ~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 363 VAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeeCcccchheeec-CCceEEEEecCCCC
Confidence 89999999998754 67899999886543
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.39 E-value=6.6 Score=49.11 Aligned_cols=156 Identities=13% Similarity=0.198 Sum_probs=89.4
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE--------cCC
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------GPD 416 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------spd 416 (1132)
.=+.+-+-|.=++.-+| .|+.+.+|+.+++..... +.+-+..|..|.. -|.
T Consensus 80 ~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 80 CKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred eeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhh
Confidence 33444444432234444 489999999998655432 3344445555542 333
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeee------eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC----CC--
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG-- 484 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~------~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~----~~-- 484 (1132)
=+++.+-..--.|.++-+.-.+..... ..+....-.|+|+....+|+ .++ +|.|| .+|.+. +|
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf 213 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWF 213 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchh
Confidence 344444444455666655432211111 12222345789999888887 444 55666 445432 11
Q ss_pred -e-E----------------EEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 485 -R-K----------------QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 485 -~-~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
+ + +-.+. .+..+|..+.+..+. .++.+-+..|+|.+||+...
T Consensus 214 ~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 214 GSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 1 1 11223 567899999985543 78999999999999998753
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=86.96 E-value=2.4 Score=29.18 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCC--CcEEEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 371 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~d--g~v~iw 371 (1132)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455788999999999888888777 777666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.69 E-value=16 Score=45.83 Aligned_cols=146 Identities=12% Similarity=0.205 Sum_probs=92.9
Q ss_pred eCCCcEEEEEcccceeeeeeccccCCeeEEEEc--------CCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCC--
Q 001176 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS--------PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-- 967 (1132)
Q Consensus 898 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-- 967 (1132)
+-|..+.+|+..++.....+.+-...|..+..- |.=+++...+.--.|.++-+.-.+.... ...+..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~--~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE--LSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc--cccccccee
Confidence 467889999999987788888777777776542 2234555555555677776543322111 1111111
Q ss_pred -CCCCCCceeEEECCCCcEEEEEeCCeEE--EEeC-C---CC-cee-------------ecCCCC-CCCCCeEEEEEccC
Q 001176 968 -QSPLVGETKVQFHNDQTHLLVVHESQIS--VYDS-K---LE-CSR-------------SWSPKD-ALPAPISSAIYSCD 1025 (1132)
Q Consensus 968 -~~~~~~v~~~~~s~dg~~l~~~~d~~v~--vwd~-~---~~-~~~-------------~~~~~~-~h~~~i~~i~~s~d 1025 (1132)
...+..|.++....+|+.+++|.||.+. +|.. . ++ |-+ .+.... .+..+|..++....
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 0112568889989999999999888543 2222 1 11 111 011111 44679999999888
Q ss_pred CCEEEEEecCCcEEEEeCCC
Q 001176 1026 GLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1026 g~~las~~~dg~i~vwd~~~ 1045 (1132)
-..|.+-++.|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999986
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=86.48 E-value=62 Score=36.44 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
+..+.++..+|.|.-.|.+++..+-...... ....+.+-.+..+|+ ++.++.++.++..|..+|+.+....... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCC-C
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
..+.=.+......+..++.++.+...|..++.......... .....-........++.+..+ . ++.+.-.|..+|
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C-cceEEEEEccCC
Q ss_pred ceeeeeccccCCceEEE----EEeCCC----CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 575 AIKRTYSGFRKRSLGVV----QFDTTR----NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~----~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
......+.......... .+.... ..++.++.++.+...|..+++.+-...................+
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~----- 294 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG----- 294 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC-----
Q ss_pred EeCCCcEEEEE
Q 001176 647 TTSDNGIKILA 657 (1132)
Q Consensus 647 ~~~dg~i~iw~ 657 (1132)
.||.+.++.
T Consensus 295 --~dG~v~~~~ 303 (370)
T COG1520 295 --ADGKVYIGF 303 (370)
T ss_pred --CCccEEEEE
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=86.33 E-value=55 Score=42.71 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=46.7
Q ss_pred CCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 972 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
..|+++++-.+.++++....|.+....-.+. ...+ ...+..+.|.+++......+.| -..+|.++-
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~k~g~-p~~l-~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQKPGR-PVPL-SRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCccccccCCCC-CccC-CCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 5688899888888888888888888884333 2222 2234578999999988766555 555777765
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.28 E-value=58 Score=35.87 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=92.0
Q ss_pred cceEEEEEecCCceEEeecccce------eEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 770 SKVVRLIYTNSGLSLLALASNAV------HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
+.+..+.+.+++..+++.+.+|. +..+++..... ..........+.+-+.. |..... - .....++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~~------~-~~D~Egi 90 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFPK------N-GLDPEGI 90 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCCc------C-CCChhHe
Confidence 55788889866666777676666 44444433111 01111111111111211 211110 0 2245678
Q ss_pred EEeeCCCEEEEee-C------CeEEEEECCCCeEEEEee---------------CCCCCeEEEEEeCCCCCeEEEEeC--
Q 001176 844 ALSKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFM---------------SPPPAATFLAFHPQDNNIIAIGME-- 899 (1132)
Q Consensus 844 ~~s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~~~~~lasg~~-- 899 (1132)
++.++|.++++.- + ..|+-++.. |+.+..+. ......-+|+++| +|+.|.++..
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8878888888775 5 668888876 66554442 1234578999999 7885554432
Q ss_pred ---CC--c-------EEEE--Eccc-cee----eeeecc-----ccCCeeEEEEcCCCCEEEE-----EcCCCcEEEEEC
Q 001176 900 ---DS--S-------VQIY--NVRV-DEV----KTKLKG-----HQNRITGLAFSPTLNALVS-----SGADAQLCMWSI 950 (1132)
Q Consensus 900 ---dg--~-------v~iw--d~~~-~~~----~~~l~~-----h~~~V~~l~~spdg~~l~s-----~~~D~~i~iwd~ 950 (1132)
|+ . ++|+ |..+ ++. ...+.. ....|+.+.+-+++++|+- .+....++|+.+
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 22 1 5554 4443 222 222332 4567899999999987773 123445666655
Q ss_pred C
Q 001176 951 D 951 (1132)
Q Consensus 951 ~ 951 (1132)
.
T Consensus 249 ~ 249 (326)
T PF13449_consen 249 D 249 (326)
T ss_pred E
Confidence 4
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.24 E-value=12 Score=41.73 Aligned_cols=158 Identities=14% Similarity=0.106 Sum_probs=93.7
Q ss_pred EEEeCCCCCeEE-EEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC--------CEEEEEcCCCcEEEEECCC-c
Q 001176 884 LAFHPQDNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSIDK-W 953 (1132)
Q Consensus 884 l~~sp~~~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg--------~~l~s~~~D~~i~iwd~~~-~ 953 (1132)
+-.+.++..+|. .|.....++-.|+..|+.+.....|.+- -+.|.|+. +.|+-. ++..|.-.|..- +
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccC
Confidence 333332555544 4556667888899999999999888775 47788754 345544 444455445432 2
Q ss_pred ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEE
Q 001176 954 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1032 (1132)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~ 1032 (1132)
.++.......+.+. ....+..-...| ++++ +..|.|++||--+...++..+. ....|..+..+.+|+++++.
T Consensus 549 NKi~v~esKdY~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 549 NKIKVVESKDYKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred Cceeeeeehhcccc----ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEe
Confidence 22221111112211 112222323344 5555 6789999999855555544433 37889999999999998766
Q ss_pred ecCCcEEEEeCC--Ccceeccc
Q 001176 1033 FCDGAIGVFDAE--TLRFRCRI 1052 (1132)
Q Consensus 1033 ~~dg~i~vwd~~--~~~~~~~~ 1052 (1132)
+ ..++.+-|+. .|+...++
T Consensus 622 C-k~yllL~d~~ik~g~~aGr~ 642 (776)
T COG5167 622 C-KNYLLLTDVPIKYGQPAGRD 642 (776)
T ss_pred e-cceEEEEecccccCCccccc
Confidence 5 5677777764 34444433
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.59 E-value=39 Score=43.15 Aligned_cols=244 Identities=8% Similarity=0.063 Sum_probs=114.2
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
.....++|+|...++|.+. .|.|++|-...-+.......-. ..+..+.+-. ..........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccceee
Confidence 3567899999999999998 8999999876443332222111 1222333332 22223334455566666543221111
Q ss_pred eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEE
Q 001176 916 KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 995 (1132)
Q Consensus 916 ~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~ 995 (1132)
+...+++..--+--.+ .-+ ..+.+++||..-..... .......+... .....-++.-.....-.+-...
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSD-LKYAGTESSNF----VPYESLSPTLSIEGLVIDLDTV 183 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhcc-ceecccccccc----ceeeeeccceeeeccccccccc
Confidence 2222333322211123 334 77888888875422111 11111111100 0000000000000000111111
Q ss_pred EEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEe
Q 001176 996 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1075 (1132)
Q Consensus 996 vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1075 (1132)
+|.+.-.. ....-|..++.+..+......+. +..-+.+-+|+.........+. +. ++..
T Consensus 184 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~------- 242 (993)
T KOG1983|consen 184 LISLPDAY----LGLSLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYL-----PN----GQLE------- 242 (993)
T ss_pred eeeccccc----ccccccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcc-----cc----cccC-------
Confidence 11110000 00111245666666554444433 4446778888777655443332 11 1111
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCcccccCCCCCCCCCCC
Q 001176 1076 HPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1116 (1132)
Q Consensus 1076 ~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~ 1116 (1132)
++ ++..++++..||.+.+||.+.+.. ...+.+++.-...
T Consensus 243 ~~-~~~~~v~~h~Dgs~~fWd~s~g~~-~~~~~~~~~~~~~ 281 (993)
T KOG1983|consen 243 SR-DGSHFVSYHTDGSYAFWDVSSGKL-QIARNPVPLVSLV 281 (993)
T ss_pred cc-CCceEEEEEecCCEEeeecCCCce-eecCccccccccC
Confidence 44 789999999999999999999875 4444444444333
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=85.54 E-value=74 Score=36.45 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee-------ccccCCeeEEEEcCCC------CEE
Q 001176 870 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-------KGHQNRITGLAFSPTL------NAL 936 (1132)
Q Consensus 870 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-------~~h~~~V~~l~~spdg------~~l 936 (1132)
.+..+...-.....|+|.| ++++|++--..|.|++++-.++...... ..-.+....|+++|+- .+|
T Consensus 21 ~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Q ss_pred EEEc----------CCCcEEEEECCCc----ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCC----------
Q 001176 937 VSSG----------ADAQLCMWSIDKW----EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES---------- 992 (1132)
Q Consensus 937 ~s~~----------~D~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~---------- 992 (1132)
.... ....|.-|.+... ............+.. ..-..++|.|||.+.++..|+
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~---H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~ 176 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGND---HNGGRLVFGPDGKIYYTIGEQGRNQGANFFL 176 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCC---cCCceEEECCCCcEEEEECCCCCCCcccccC
Q ss_pred -----------------------eEEEEeCCCC-----------ceeecCCCCCCCCCeEEEEEccCCCEEEE
Q 001176 993 -----------------------QISVYDSKLE-----------CSRSWSPKDALPAPISSAIYSCDGLLVYA 1031 (1132)
Q Consensus 993 -----------------------~v~vwd~~~~-----------~~~~~~~~~~h~~~i~~i~~s~dg~~las 1031 (1132)
.|.=.+.++. ....+..+ -.....++|.|+|++.++
T Consensus 177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G---~RNp~Gla~dp~G~Lw~~ 246 (454)
T TIGR03606 177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYG---HRNPQGLAFTPDGTLYAS 246 (454)
T ss_pred cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEe---ccccceeEECCCCCEEEE
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=85.01 E-value=5 Score=39.34 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.7
Q ss_pred cCeEEEEEcCCC------CeEEEEeCCCeEEEEEecC
Q 001176 406 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 406 ~~V~~v~~spdg------~~las~~~dg~i~iwd~~~ 436 (1132)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 2788889999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=84.67 E-value=64 Score=35.00 Aligned_cols=258 Identities=13% Similarity=-0.009 Sum_probs=0.0
Q ss_pred EecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee
Q 001176 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 856 (1132)
Q Consensus 777 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s 856 (1132)
+.-++++|+.|+.+|...+ +..........+.. ...|+++...+..+.|++-+
T Consensus 9 ~~~~~~~lL~GTe~Gly~~-----------------------~~~~~~~~~~kl~~----~~~v~q~~v~~~~~lLi~Ls 61 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVL-----------------------NISDQPGTLEKLIG----RRSVTQIWVLEENNVLLMIS 61 (302)
T ss_pred cccCCcEEEEEeCCceEEE-----------------------EcccCCCCeEEecC----cCceEEEEEEhhhCEEEEEe
Q ss_pred CCe--EEEEECCCCeEE---------------EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc
Q 001176 857 GGK--VSLFNMMTFKVM---------------TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 857 dg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
|.+ ++++++...... ...-++.......++........+++....+|.++.............
T Consensus 62 gk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k 141 (302)
T smart00036 62 GKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFK 141 (302)
T ss_pred CCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhc
Q ss_pred c--------cCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCC--cccccceeeeCCCCCCCCCCCceeEEECCCCcEEE
Q 001176 920 H--------QNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 987 (1132)
Q Consensus 920 h--------~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 987 (1132)
. ..++..+..+++ ...+..|+..+...++++.. ........-........ .++....+..+ .++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~--~p~~i~~l~~~--e~L 217 (302)
T smart00036 142 SKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSL--KPISVVQVPRD--EFL 217 (302)
T ss_pred ccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccccc--CceEEEEECCC--eEE
Q ss_pred EEeCCeEEEEeCCC-CceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC--CccccccccC
Q 001176 988 VVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP--SAYIPTYAVS 1064 (1132)
Q Consensus 988 ~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~ 1064 (1132)
.+.+....+-|..| ...+.....= .....++++. ..+|++-..++ |.|+++.+++.+..+.. ..
T Consensus 218 lc~~~~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i~~~~~~-------- 284 (302)
T smart00036 218 LCYDEFGVFVNLYGKRRSRNPILHW--EFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQELADRETR-------- 284 (302)
T ss_pred EEECcEEEEEeCCCCccccceEEEc--CCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEEecCCCc--------
Q ss_pred CCCCCcEEEEeCCCCCCeEEEEeCCCcEEE
Q 001176 1065 SNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1094 (1132)
Q Consensus 1065 ~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~v 1094 (1132)
+.++|.+ .++.|.+
T Consensus 285 --------------~~r~L~~--~~~~I~~ 298 (302)
T smart00036 285 --------------KIRLLGS--SDRKILL 298 (302)
T ss_pred --------------ceEEEec--CCCeEEE
|
Unpublished observations. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.39 E-value=0.31 Score=53.27 Aligned_cols=141 Identities=16% Similarity=0.245 Sum_probs=98.8
Q ss_pred eeecCCCCCCceeccCC------cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeee
Q 001176 315 VSFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWD 388 (1132)
Q Consensus 315 ~~~~~~g~~~~~~~~d~------~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 388 (1132)
..+.+.++.+++...+. .-++.+..+..++.-..++|..+|..+++.+-..+.+.|||+.+...-.-
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL------- 112 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL------- 112 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-------
Confidence 34455555555554433 34566666667778888999999987777777889999999986532210
Q ss_pred cccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEE
Q 001176 389 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468 (1132)
Q Consensus 389 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~ 468 (1132)
..-..|.... +.|++-+..++.+...|.+.|++..+.+... ....|..+++++++.+++. .+
T Consensus 113 ----------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vi 174 (615)
T KOG2247|consen 113 ----------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VI 174 (615)
T ss_pred ----------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---ee
Confidence 0011122222 7899999999999999999999988765443 2333999999999999985 77
Q ss_pred EEcCCCcEEEEE
Q 001176 469 TCGDDKMIKVWD 480 (1132)
Q Consensus 469 s~~~dg~v~vwd 480 (1132)
.++.|..+.+-.
T Consensus 175 l~dcd~~L~v~~ 186 (615)
T KOG2247|consen 175 LCDCDNTLSVTT 186 (615)
T ss_pred ecCcHHHHHHhh
Confidence 788787766544
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.32 E-value=85 Score=36.10 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=46.8
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
....|..+.+...|. +-+|+.|| +..||..+++.++.. ......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 345788888888775 55677888 777887777655421 112235677777777776 67777665 66666444
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.01 E-value=4.9 Score=47.77 Aligned_cols=134 Identities=9% Similarity=0.122 Sum_probs=79.2
Q ss_pred CeeEEEEcc-CCCeEEEEEcCCCcEEEEecCCCccccccceeeeeccc--ccccccccccCCCCcCeEEEEEc--CCCCe
Q 001176 345 NVMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA--ASMPLQNALLNDAAISVNRCVWG--PDGLM 419 (1132)
Q Consensus 345 ~V~~~~~sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~v~~s--pdg~~ 419 (1132)
.|+.|.... .+..+|+.+..||.|.+|.+++--...... .-+... ................++.+++. ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 455555444 234588899999999999874311000000 000000 00001111122345689999998 78889
Q ss_pred EEEEeCCCeEEEEEecCCC-ceeeeeeeecccCCEEEEEEecCCC--c--EEEEEEcCCCcEEEEEC
Q 001176 420 LGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNK--Q--LCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~s~d~~--~--~~l~s~~~dg~v~vwd~ 481 (1132)
||+++....|.||-..... ..... .-..|...|-+|+|.++.. . ..+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~-~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHV-PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccc-cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999888888888766521 11111 1113566799999987651 1 36788889999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=83.93 E-value=4.3 Score=41.46 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=54.5
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCcccccce-ee-eCCCCC----CCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCC
Q 001176 929 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-FI-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1002 (1132)
+..++.+|+..+.+|.+++||+.+.+..... .+ ...... ......|..+.++.+|.-+++-.+|..+.|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997754332 00 011100 02235788899999999988877788999998665
Q ss_pred ceee
Q 001176 1003 CSRS 1006 (1132)
Q Consensus 1003 ~~~~ 1006 (1132)
+-..
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=83.69 E-value=78 Score=35.21 Aligned_cols=41 Identities=10% Similarity=-0.091 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEec
Q 001176 518 GKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 558 (1132)
..+.+||..+.+-...-.... ......+..-+++..+.++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 457788877654333211111 11111222346677777765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=83.57 E-value=1.3e+02 Score=37.69 Aligned_cols=173 Identities=12% Similarity=0.132 Sum_probs=101.7
Q ss_pred CCCeeEEEEe---e----CCCEEEEeeCCeEEEEECC------C---------CeEEEEeeC---CCCCeEEEEEeCCCC
Q 001176 837 EESAACIALS---K----NDSYVMSASGGKVSLFNMM------T---------FKVMTMFMS---PPPAATFLAFHPQDN 891 (1132)
Q Consensus 837 ~~~v~~~~~s---~----dg~~la~~sdg~i~vwd~~------~---------~~~~~~~~~---~~~~i~~l~~sp~~~ 891 (1132)
..+|..|+|+ . ..++|++-....+.|+... . ..++..+.. ...+...++|+|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 6788889888 2 2357777777888888721 1 122333331 223567788888667
Q ss_pred CeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 971 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 971 (1132)
..+|+.+..|...||++..+... +. .... +.....|.| +.|...-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc------------------
Confidence 78888888888888888221110 00 1111 112222333 2222110
Q ss_pred CCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCc
Q 001176 972 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~d--g~~las~~~dg~i~vwd~~~~ 1046 (1132)
..-..+.|.++-..|++++...+.++|+.................|..+.-+|+ +..++.. ...|...++...
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 234578899998999999999999999944433221111222578889988887 3333332 367888888763
|
These proteins are found in fungi. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=83.41 E-value=26 Score=34.94 Aligned_cols=162 Identities=18% Similarity=0.262 Sum_probs=87.0
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccc---c---eeEEE-eeccc--cC
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---A---VHKLW-KWQRT--ER 803 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g---~i~vw-~~~~~--~~ 803 (1132)
+..+++.....|.+|++........+ .++ .-+.|..++++..|.+|++.-.+ . .+++| ++... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~---~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLC---TFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeE---EEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 45556677788999999832222221 222 34779999999999999997653 2 45554 22211 11
Q ss_pred CCCCcccccccc--ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeE-EE-----Eee
Q 001176 804 NPSGKATANVAP--QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV-MT-----MFM 875 (1132)
Q Consensus 804 ~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~-~~-----~~~ 875 (1132)
.+-....+...+ ..-......+-...++- ...+.+++..|-..-|++|+++++.+|.+..... .. .|.
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElPl----~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELPL----SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEecC----CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEech
Confidence 111100000000 00000011111112322 5567888888877778888999999998865433 11 111
Q ss_pred -----CCCC-CeEEEEEeCCCCCeEEEEeCCCcEEEEEc
Q 001176 876 -----SPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 876 -----~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 908 (1132)
-|.+ ....++|.. .++|..+.. .+++..+
T Consensus 179 ~~l~~~~~~~~p~~v~ic~---~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAICE---GYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEEEe---eEEEEecCC-EEEEEEE
Confidence 1111 245667754 577766543 6766654
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.3e+02 Score=37.41 Aligned_cols=108 Identities=18% Similarity=0.106 Sum_probs=67.4
Q ss_pred EEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE--EeCCCcceecccC
Q 001176 977 VQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV--FDAETLRFRCRIG 1053 (1132)
Q Consensus 977 ~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v--wd~~~~~~~~~~~ 1053 (1132)
.++.|...+++++-...+++||+ +.+.++...... -...|+++.+ .+.++++|...-.|.+ |+-+..+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 45667777889999999999999 555544443321 2556777776 5667888876666655 4555444432222
Q ss_pred CCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1054 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1054 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
. .-..+|+++.+- |...++.|.+=|.+.+-++..
T Consensus 1016 -D---------~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 -D---------PVPRHVTALELL--DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred -C---------CccceeeEEEEe--cCCceeeccccCcEEEEECCC
Confidence 1 112445555554 556788888778877766643
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.35 E-value=59 Score=40.20 Aligned_cols=249 Identities=10% Similarity=0.005 Sum_probs=113.7
Q ss_pred EEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEE
Q 001176 775 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 854 (1132)
Q Consensus 775 ~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~ 854 (1132)
.++..-|..+.+|+.+|.+..|.+........... .. ++ ......+ + ..+|..+...+.-.++.+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~--------~~-~~~~~~~----~-kk~i~~l~~~~~~~~ll~ 84 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT--------ET-VKFEKEF----S-KKPINKLLVCASLELLLI 84 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc--------ch-hHHhhhh----c-cchhHHHhhcchhcchhe
Confidence 34445677899999999999998764322111110 00 00 0000001 1 456666666666677777
Q ss_pred eeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEe--CC-CC--CeEEEEe-CCC-cEEEEEcccceeeeeeccccCCeeEE
Q 001176 855 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH--PQ-DN--NIIAIGM-EDS-SVQIYNVRVDEVKTKLKGHQNRITGL 927 (1132)
Q Consensus 855 ~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--p~-~~--~~lasg~-~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l 927 (1132)
-+|+.|.++++.+.+... ...+...++..+.. +. .+ .+.++.. ... ....|+-.++-.+..--+-.....++
T Consensus 85 l~dsqi~~~~l~~~~~~~-~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 163 (877)
T KOG2063|consen 85 LSDSQIAVHKLPELEPVP-SGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKAR 163 (877)
T ss_pred ecCCcceeeecCcccccc-cccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhh
Confidence 778889998887665521 11111111111110 00 11 1122222 111 12223322222221111111122222
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCce-ee
Q 001176 928 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS-RS 1006 (1132)
Q Consensus 928 ~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~-~~ 1006 (1132)
+| .|..+.++-.+....+|...++............ . ..-..++--.++..++.+.|+...+-|..|... +.
T Consensus 164 ~~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~-~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~ 236 (877)
T KOG2063|consen 164 AW--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN-E----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRG 236 (877)
T ss_pred cc--cceeEEEeecceeEEEecCCCccccceeeecccc-c----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCC
Confidence 22 2333443433344444544443211111111110 0 122345556677677778888777778765552 11
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 1007 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 1007 ~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
-..- +....++.+ +..++++-+ ++.|.||+..++.++.++
T Consensus 237 ~l~w---s~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 237 TLVW---SEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred ceEe---cccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 0000 111112221 344665554 569999999999887776
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=82.14 E-value=15 Score=42.96 Aligned_cols=131 Identities=14% Similarity=0.019 Sum_probs=68.6
Q ss_pred EEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEec-------------CCcEEEEeC
Q 001176 977 VQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-------------DGAIGVFDA 1043 (1132)
Q Consensus 977 ~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~-------------dg~i~vwd~ 1043 (1132)
+.+-++|.+++... ..+..+|..++.+..+....+...-=..+..-|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd- 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD- 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-
Confidence 56678888877644 8888888877766554332110000124667799999888872 12366667
Q ss_pred CCcceecccCCCccc-cccc---------------cCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCC
Q 001176 1044 ETLRFRCRIGPSAYI-PTYA---------------VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1107 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~ 1107 (1132)
.+|+.+..+.....+ +... ....-.++-++.+.+.++.+|+|+=.-..|...|..+++-.|.+.
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 778777665544333 1111 112224566889988665555555445599999988999888776
Q ss_pred CC
Q 001176 1108 PS 1109 (1132)
Q Consensus 1108 ~~ 1109 (1132)
++
T Consensus 311 ~~ 312 (477)
T PF05935_consen 311 PP 312 (477)
T ss_dssp -S
T ss_pred CC
Confidence 54
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=81.82 E-value=7.7 Score=39.61 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=47.8
Q ss_pred CCCeEEEEeCCCcEEEEEcccceeeee-------ec-------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 890 DNNIIAIGMEDSSVQIYNVRVDEVKTK-------LK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 890 ~~~~lasg~~dg~v~iwd~~~~~~~~~-------l~-------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
.+.+|++.+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 677899999999999999998875432 22 3556788889998888777765 56788887764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=81.63 E-value=6.6 Score=27.36 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.2
Q ss_pred eCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEE
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 886 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 886 (1132)
||+++|.++. +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777776 68999999999988887775 233344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=80.85 E-value=7.8 Score=37.96 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=26.1
Q ss_pred CCeeEEEEcCCC------CEEEEEcCCCcEEEEECCC
Q 001176 922 NRITGLAFSPTL------NALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 922 ~~V~~l~~spdg------~~l~s~~~D~~i~iwd~~~ 952 (1132)
..|.+++|||.| -.||....++.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999965 4788999999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=80.51 E-value=28 Score=35.98 Aligned_cols=145 Identities=13% Similarity=0.130 Sum_probs=79.2
Q ss_pred EEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC----Cceeeeec-cccCCceEEEEEeC
Q 001176 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 595 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~-~~~~~~v~~~~~~~ 595 (1132)
.+||+.+.+.............+-++-+||++|.+++. .++...+++++... ......-. -......-....-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45777765544322223334444567899999998874 44667799998654 11111100 01111344566678
Q ss_pred CCCEEEEEEcCC-eEEEEECCC-Ce-eEEE--EeC---CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeee
Q 001176 596 TRNRFLAAGDEF-QIKFWDMDN-MN-MLTT--VDA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 667 (1132)
Q Consensus 596 ~~~~l~~~~~dg-~i~iwd~~~-~~-~~~~--~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (1132)
||+.++.||... ...+|.... .. .... +.. .....-=..+...|+|++++.+..+. .+||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC-eEEee
Confidence 999999988654 344555422 11 1111 110 00111123566789999998887653 46687776 44444
Q ss_pred cc
Q 001176 668 LE 669 (1132)
Q Consensus 668 ~~ 669 (1132)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 43
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=80.43 E-value=97 Score=34.06 Aligned_cols=110 Identities=9% Similarity=-0.011 Sum_probs=52.6
Q ss_pred cEEEEEecCC-----eEEEEEcCCCCce---EEecCCCCeE-EEEEEcCCCCEEEEEec-CCCCCCeEEEEeCCCCceee
Q 001176 509 QFIFSTAIDG-----KIKAWLYDYLGSR---VDYDAPGNWC-TMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 509 ~~l~s~s~dg-----~i~~wd~~~~~~~---~~~~~~~~~v-~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~ 578 (1132)
.+++.|+.++ .+..+|+.+.... ..+..-.... ...+..-+++..+.++. +......+..||+.+.+...
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 5666676543 4666777665431 1111111111 11112234555566553 11123468899988765432
Q ss_pred e--eccccCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCeeE
Q 001176 579 T--YSGFRKRSLGVVQFDTTRNRFLAAGDEF----QIKFWDMDNMNML 620 (1132)
Q Consensus 579 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~ 620 (1132)
. +.... .....+...++...+.||.++ .+.+||..+.+..
T Consensus 154 ~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 154 LPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 2 22111 112222334566666677553 3568888876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1132 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-08 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-04 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-04 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-05 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 4e-05 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 5e-05 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 6e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1132 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.8 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.74 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.56 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.53 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.53 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.51 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.5 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.5 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.48 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.48 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.41 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.4 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.38 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.36 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.32 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.31 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.29 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.28 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.26 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.23 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.22 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.22 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.2 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.19 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.18 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.17 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.16 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.15 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.14 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.13 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.11 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.07 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.06 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.03 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.95 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.94 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.94 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.92 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.88 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.88 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.83 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.78 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.78 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.66 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.64 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.64 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.62 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.61 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.58 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.58 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.57 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.57 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.56 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.53 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.52 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.51 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.51 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.5 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.5 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.48 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.47 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.45 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.44 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.4 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.35 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.33 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.32 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.29 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.28 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.26 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.25 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.22 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.18 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.17 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.15 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.14 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.13 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.12 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.09 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.09 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.96 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.93 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.87 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.87 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.87 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.86 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.86 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.83 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.78 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.69 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.58 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.57 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 97.57 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.55 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 97.54 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.53 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.49 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.48 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.46 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.4 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 97.39 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.38 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.2 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.08 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.07 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.01 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.98 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.97 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.93 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.93 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.9 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.87 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.86 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.85 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.82 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.76 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.74 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.61 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.57 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.49 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.43 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.41 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.27 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.26 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.19 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.13 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.96 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.8 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.66 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.66 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.65 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.62 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.51 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.26 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.21 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.84 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.81 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.76 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.53 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.23 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.22 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.31 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.77 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.72 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.61 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.61 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.02 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 89.01 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.85 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.98 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.78 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 82.66 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 80.82 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-68 Score=650.55 Aligned_cols=566 Identities=22% Similarity=0.368 Sum_probs=487.3
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
...|+ |++.|+|++|||||+ +||+|+.|++|+|||. +++.+.. +.+|.+.|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 35576 999999999999999 6999999999999995 5555442 678999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
||++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+... .......+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG-QLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTC-CEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeeccccc-ceeeeccCCCC
Confidence 99999999999999999964 44443 6889999999999999999 899999999999999654 45567788999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
.|..+.++++. ..+++++.++.+++|+.. .........+...+.+++++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 99999998755 789999999999999865 3445566778889999999999999999975 788999995 578
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1132)
.+..+.+|.. .|.+++|+|+++++++++.|+.|++||. +++.+..+..|. ..|.+++|+|+++.+++++.|+.|++
T Consensus 213 ~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 213 LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp EEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 8888888877 8999999999999999999999999996 466777777664 48999999999999999999999999
Q ss_pred EEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccc
Q 001176 656 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 735 (1132)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1132)
|+... +....+.+
T Consensus 289 w~~~~--~~~~~~~~----------------------------------------------------------------- 301 (577)
T 2ymu_A 289 WNRNG--QLLQTLTG----------------------------------------------------------------- 301 (577)
T ss_dssp EETTS--CEEEEECC-----------------------------------------------------------------
T ss_pred EeCCC--cEEEEEec-----------------------------------------------------------------
Confidence 99643 22222221
Q ss_pred ccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccc
Q 001176 736 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 815 (1132)
Q Consensus 736 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 815 (1132)
|...|.+++|+|+++.+++++.|+.+++|+....
T Consensus 302 --------------------------------h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------- 335 (577)
T 2ymu_A 302 --------------------------------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------- 335 (577)
T ss_dssp --------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------
T ss_pred --------------------------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------
Confidence 5567899999999999999999999999985321
Q ss_pred ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 816 ~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
.+. .+.+ | ...+.+++|+|+|+++++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|
T Consensus 336 --------~~~--~~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l 400 (577)
T 2ymu_A 336 --------HLQ--TLTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTI 400 (577)
T ss_dssp --------EEE--EECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred --------eeE--EEeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEE
Confidence 111 1223 6 78999999999999999998 899999995 5788899999999999999999 89999
Q ss_pred EEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCc
Q 001176 895 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 974 (1132)
Q Consensus 895 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 974 (1132)
++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||.... .+....+|. ..+
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v 470 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSV 470 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCE
Confidence 99999999999995 67788899999999999999999999999999999999997542 233344454 678
Q ss_pred eeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 975 TKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 975 ~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
.+++|+||+++|++ +.|+.|++||.+++.+..+. +|...|++++|+|||++||+++.||.|++||. +++.+..+.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 99999999999999 57899999999888777663 56899999999999999999999999999996 566665553
Q ss_pred CCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1054 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1054 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
+|+..|.+++|+| |+++|+|++.|++|++||
T Consensus 547 -----------~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -----------GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -----------CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred -----------CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 8899999999999 889999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-65 Score=624.93 Aligned_cols=575 Identities=13% Similarity=0.140 Sum_probs=461.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.+.+.+++|||||+ +||+++ ++.|+||++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 467899999999999 577776 57999999987765442 678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeEEEEecCCCCCe
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 497 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~h~~~v 497 (1132)
+|+.|++|+|||+.+++... ...+.+|.++|.+++|+||++ .|++++.+ +.|++|| .++....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997654432 235788999999999999999 78877755 3677776 567778899999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
.+++|+|++. ..|++++.|++|++||....+....+.+|...|.+++|+|+|++|++++. |+.|++||+.+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999988642 46999999999999999888778889999999999999999999999985 788999999999988
Q ss_pred eeec-------cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-CCCcceEEEcCCCCEEEEEeC
Q 001176 578 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 578 ~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
..+. +|.. .|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.. ...+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8874 5665 899999999999999999999999999999999888865421 112344555 7889999999
Q ss_pred CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccc
Q 001176 650 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 729 (1132)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1132)
|+.+++|+..++ .....+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998766 3322222
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 809 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 809 (1132)
+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus 322 -------------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 322 -------------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred -------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 2567799999999999999999999999998642
Q ss_pred ccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEE---eeCCCCCeEEEE
Q 001176 810 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFLA 885 (1132)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~ 885 (1132)
+........+ | ...|.+++|++++. +++++ |+++++|+..++..... .........+++
T Consensus 356 -------------~~~~~~~~~~--h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 356 -------------GISNRVFPDV--H-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp -------------CCEEECSSCS--C-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred -------------CceeeecccC--C-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 2222211122 6 88999999998775 55555 99999999876543210 011234568899
Q ss_pred EeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC
Q 001176 886 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 965 (1132)
Q Consensus 886 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 965 (1132)
|+| ++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .
T Consensus 419 ~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~ 488 (611)
T 1nr0_A 419 VSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-I 488 (611)
T ss_dssp ECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-E
T ss_pred EeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-c
Confidence 999 78777776 567899998 344 55554 88899999999999999999999999999998754211 111 2
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC-CceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 966 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 966 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~-~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
+|. ..|.+++|+|||++|++ +.|+.|++|++.. ..........+|...|++++|+|||++||+|+.|++|++||+
T Consensus 489 ~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 489 VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 343 57999999999999999 5799999999932 332221122347999999999999999999999999999999
Q ss_pred CCcceecccCCCccccccccCCC-CCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
.++..... ....+| ...|.+++|+| ++. |++++.|++|++|++.
T Consensus 566 ~~~~~~~~---------~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 566 NKPSDHPI---------IIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TCTTSCCE---------EETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCcccccc---------hhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 98753210 112377 78999999999 666 9999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=613.47 Aligned_cols=567 Identities=15% Similarity=0.173 Sum_probs=458.9
Q ss_pred cCCcceeeecCCCCCCceecc------CCcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccc
Q 001176 309 TGQSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 381 (1132)
Q Consensus 309 ~~~v~~~~~~~~g~~~~~~~~------d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~ 381 (1132)
.+.+..++|+|||+.++.... +...+....++. |.+.|++++|||||+ +||+|+.|++|+|||+.+++....
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee
Confidence 346678999999998887653 223456677776 999999999999998 799999999999999976543221
Q ss_pred cceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecccCCEEEEE
Q 001176 382 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 457 (1132)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~ 457 (1132)
. .+.+|.+.|.+++|+|||++||+++.+ +.|++|| .+.... .+.+|...|++++
T Consensus 97 ~-----------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~ 154 (611)
T 1nr0_A 97 T-----------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVD 154 (611)
T ss_dssp E-----------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEE
T ss_pred E-----------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEE
Confidence 0 156799999999999999999998865 4677777 444433 5789999999999
Q ss_pred EecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001176 458 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 535 (1132)
Q Consensus 458 ~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 535 (1132)
|+|++.. .|++|+.|++|++||..+++.+.++.+|...|.+++|+|+ +.+|++++.|++|++||+.+++....+.
T Consensus 155 f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd--g~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 155 FKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp ECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred ECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC--CCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 9999874 5999999999999999999999999999999999999885 4899999999999999999888777663
Q ss_pred -----CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC--CceEEEEEeCCCCEEEEEEcCCe
Q 001176 536 -----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQ 608 (1132)
Q Consensus 536 -----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~ 608 (1132)
.|.+.|.+++|+|+|++|++++. |+.|++||+.+++.+..+..+.. .....+.| ++..+++++.|+.
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGF 305 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCC
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCc
Confidence 68899999999999999999985 78899999999998888765422 13445555 6788999999999
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcc
Q 001176 609 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 688 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1132)
+++||..+++....+..|.. .|.+++|+|+|++|++++.|++|++||+.++ .....+.
T Consensus 306 i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-~~~~~~~------------------- 363 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP------------------- 363 (611)
T ss_dssp EEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS-------------------
T ss_pred EEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeeecc-------------------
Confidence 99999999988887776644 8999999999999999999999999999877 2221110
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCccc
Q 001176 689 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 768 (1132)
Q Consensus 689 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~ 768 (1132)
..|
T Consensus 364 -----------------------------------------------------------------------------~~h 366 (611)
T 1nr0_A 364 -----------------------------------------------------------------------------DVH 366 (611)
T ss_dssp -----------------------------------------------------------------------------CSC
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 115
Q ss_pred ccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 769 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
...|.+++|++++ .+++++.|+.+++|+......... ......+ .....+++|+|+
T Consensus 367 ~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~~------~~~~~~~~~s~d 422 (611)
T 1nr0_A 367 ATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANKL------SSQPLGLAVSAD 422 (611)
T ss_dssp SSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEEC------SSCEEEEEECTT
T ss_pred cceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeeec------CCCCcEEEEeCC
Confidence 6678999999776 588999999999998653221100 0000011 334678999999
Q ss_pred CCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee--eeeeccccCCeeE
Q 001176 849 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITG 926 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~ 926 (1132)
|..++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|+.|++||+.+++. +.. .+|...|++
T Consensus 423 g~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~ 496 (611)
T 1nr0_A 423 GDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS 496 (611)
T ss_dssp SSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE
T ss_pred CcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE
Confidence 9988888899999999 344 55555 888899999999 899999999999999999987653 233 679999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCC-cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCC-CCc
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LEC 1003 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~-~~~ 1003 (1132)
++|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+. +..
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 99999999999999999999999987 432110 0122354 68999999999999999 579999999993 332
Q ss_pred eeecCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 1004 SRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1004 ~~~~~~~~~h-~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
.. .....+| ...|++++|+||++ |++++.||+|++|++.
T Consensus 571 ~~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HP-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CC-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cc-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 21 0113467 78999999999998 9999999999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-64 Score=610.30 Aligned_cols=555 Identities=21% Similarity=0.376 Sum_probs=477.8
Q ss_pred cccCCcceeeecCCCCCCceeccCC------cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccc
Q 001176 307 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 379 (1132)
Q Consensus 307 ~~~~~v~~~~~~~~g~~~~~~~~d~------~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~ 379 (1132)
.|...|.+++|+|||+.++++..|. .++++++++. |...|++++|||||+ +||+|+.|++|+|||.. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 4667899999999999999886653 4678888888 999999999999998 69999999999999964 4444
Q ss_pred cccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe
Q 001176 380 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 459 (1132)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s 459 (1132)
.. +.+|.+.|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999976542 22467899999999999
Q ss_pred cCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC
Q 001176 460 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 539 (1132)
Q Consensus 460 ~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 539 (1132)
|++. .+++++.++.+++|+. ..........|...|.+++++|++ .++++++.|+.|++||.. .+....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeCC-CcEEEEEecCCC
Confidence 9999 7899999999999995 455566777899999999998754 899999999999999964 566677888999
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
.|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++||.. ++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcE
Confidence 9999999999999999975 778999995 4778888888877 89999999999999999999999999964 567
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 699 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 699 (1132)
+..+..|. ..|.+++|+|++++|++++.|+.|++|+.... . ...+.
T Consensus 296 ~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~~------------------------------ 341 (577)
T 2ymu_A 296 LQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTLT------------------------------ 341 (577)
T ss_dssp EEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEEC------------------------------
T ss_pred EEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEEe------------------------------
Confidence 77777664 48999999999999999999999999997543 1 11111
Q ss_pred cccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEec
Q 001176 700 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 779 (1132)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 779 (1132)
.|...+.+++|+|
T Consensus 342 -------------------------------------------------------------------~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 342 -------------------------------------------------------------------GHSSSVWGVAFSP 354 (577)
T ss_dssp -------------------------------------------------------------------CCSSCEEEEEECT
T ss_pred -------------------------------------------------------------------CCCCCEEEEEECC
Confidence 1456788999999
Q ss_pred CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CC
Q 001176 780 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG 858 (1132)
Q Consensus 780 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg 858 (1132)
+|+.+++++.||.+++|+.. +..+.. +.+ | ...|.+++|+|||++|++++ |+
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~-----------------------~~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRN-----------------------GQLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TSSEEEEEETTSEEEEEETT-----------------------CCEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEeCCCEEEEEcCC-----------------------CCEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999742 111111 223 6 88999999999999999998 89
Q ss_pred eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEE
Q 001176 859 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 938 (1132)
Q Consensus 859 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 938 (1132)
.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999995 5788899999999999999999 8999999999999999996 56788899999999999999999999999
Q ss_pred EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCe
Q 001176 939 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1017 (1132)
Q Consensus 939 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i 1017 (1132)
++.|++|++||... + ++....+|. ..|++++|+|||++|++ +.|+.|++||.+++++..+ .+|...|
T Consensus 485 ~~~d~~i~iw~~~~-~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~v 552 (577)
T 2ymu_A 485 ASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSV 552 (577)
T ss_dssp EETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSCE
T ss_pred EeCCCEEEEEcCCC-C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCCE
Confidence 99999999999643 3 344455665 67999999999999999 5789999999988777765 4579999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEe
Q 001176 1018 SSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 1018 ~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
++++|+|||++|++++.||+|++||
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-63 Score=659.66 Aligned_cols=615 Identities=13% Similarity=0.168 Sum_probs=508.1
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
.+. |.+.|++++|||+|+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 444 999999999999999 699999999999999999887653 66899999999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 497 (1132)
++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999987665 67899999999999996554489999999999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------------CCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
.+++|+|++ .++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++
T Consensus 747 ~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~ 819 (1249)
T 3sfz_A 747 NHCRFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KN 819 (1249)
T ss_dssp EEEEECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TT
T ss_pred EEEEEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CC
Confidence 999998854 89999999999999999987765544321 23678999999999999986 56
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
.+.+||..++..+..+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..|.. .|.+++|+|+|+++
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEE
Confidence 7999999999988887744444899999999999999999999999999999999999887754 89999999999999
Q ss_pred EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 645 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
++++.||.|++|++.+............
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~---------------------------------------------------- 925 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQE---------------------------------------------------- 925 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEE----------------------------------------------------
T ss_pred EEEeCCCeEEEEEccccceeeeecccce----------------------------------------------------
Confidence 9999999999999865411110000000
Q ss_pred CCccccccccc-ccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccC
Q 001176 725 IDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 803 (1132)
Q Consensus 725 ~~~~~~~~~~~-~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 803 (1132)
.......+... +.....+.+.++...... ... .....+.+++++|+++.+++++.+|.+.+|++..
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~--- 992 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQ----IDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN--- 992 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCC----EEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT---
T ss_pred eeEEEcCCCcEEEEecCCcceEEEecCcce----EEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC---
Confidence 00001111111 122223555555544311 111 1346799999999999999999999999998642
Q ss_pred CCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeE
Q 001176 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 882 (1132)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 882 (1132)
+..... +.+ | ...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.
T Consensus 993 -------------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~ 1048 (1249)
T 3sfz_A 993 -------------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK 1048 (1249)
T ss_dssp -------------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEE
T ss_pred -------------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEE
Confidence 222221 223 6 88999999999999999998 9999999999988764 557999999
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeee
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 962 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 962 (1132)
+++|+| ++ .+++++.||.|++||+.+++....+.+|.+.|++++|+|+++++++++.|++|++||+.+++ .+.
T Consensus 1049 ~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~ 1121 (1249)
T 3sfz_A 1049 DFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLH 1121 (1249)
T ss_dssp EEEECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSB
T ss_pred EEEEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eee
Confidence 999999 65 56789999999999999999999999999999999999999999999999999999999876 344
Q ss_pred CCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecC------CCCCCCCCeEEEEEccCCCEEEEEec
Q 001176 963 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWS------PKDALPAPISSAIYSCDGLLVYAGFC 1034 (1132)
Q Consensus 963 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~------~~~~h~~~i~~i~~s~dg~~las~~~ 1034 (1132)
...+|. ..|.+++|+|||++|++ +.||.|++||+ +++.+..+. ...+|...|++++|+|||++|++++
T Consensus 1122 ~l~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~- 1197 (1249)
T 3sfz_A 1122 ELKGHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1197 (1249)
T ss_dssp CCCCCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-
T ss_pred eeccCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-
Confidence 455665 67999999999999999 56899999999 565554431 1245789999999999999999885
Q ss_pred CCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1035 DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1035 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
|.|++||+.+++.+..+. +|...+.+++|+| ++.+|++++.||.|++|++.
T Consensus 1198 -g~v~vwd~~~g~~~~~~~-----------~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1198 -GYLKWWNVATGDSSQTFY-----------TNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -SSEEEBCSSSCBCCCCCC-----------CSSCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred -CeEEEEECCCCceeeeee-----------ccCCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 999999999998876654 5667888999999 88999999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-59 Score=570.51 Aligned_cols=559 Identities=10% Similarity=0.159 Sum_probs=474.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC----ccccccceeeeecccccccccccccCCCCcC-eEEEEEcC-
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 415 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp- 415 (1132)
|.+.|++++|||+|+ +|++++ ++.|+|||+.++ +.... +.+|.+. |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 778999999999999 577776 899999999987 44332 6789999 99999999
Q ss_pred -CCCeEEEEeCCCeEEEEEecCCC-----ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCe
Q 001176 416 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 485 (1132)
Q Consensus 416 -dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~ 485 (1132)
|+++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997551 1223346778999999999999999 78888877 6888887 777
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---eEEEEEEcCC-CCEEEEEecCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 561 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 561 (1132)
.+..+.+|...|.+++|+|++. .++++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ +++|++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999988652 3899999999999999999888888988988 9999999999 999999975
Q ss_pred CCCeEEEEeCCCCceeeee-c---cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC--CCCcceE
Q 001176 562 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 635 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 635 (1132)
++.|++||+.+++.+..+ . .|.. .|.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 778999999999999998 5 6665 89999999 999999999999999999999999998876531 1356677
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCC
Q 001176 636 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 715 (1132)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 715 (1132)
.|. ++.++++++.||.|++||+.++ +....+.+|...+..+
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~------------------------------------- 345 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL------------------------------------- 345 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE-------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEE-------------------------------------
Confidence 775 8999999999999999999987 6667777766544321
Q ss_pred CcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEE
Q 001176 716 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 795 (1132)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~v 795 (1132)
.+ ++ ++..+.|+.|++|++. .+. ..|...|.+++| +++..+++++.|+.+++
T Consensus 346 ------------~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 346 ------------TV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp ------------ET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred ------------Ee-cC--cEEECCCCeEEEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 12 23 5666678999999987 122 348889999999 66788999999999999
Q ss_pred EeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEee
Q 001176 796 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 875 (1132)
Q Consensus 796 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~ 875 (1132)
|++...+. ...+.+++++|++.+++++.++.+.+|+..+++.+..+.
T Consensus 398 ~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 398 NGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 98753211 235788999999999999889999999999999988887
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeC-CCcEEEEEcccceee-eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCc
Q 001176 876 SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 876 ~~~~~i~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~ 953 (1132)
|...+++++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 445 -~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 445 -LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp -CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 88999999998 579999999 999999999988766 778899999999999999999999999999999999876
Q ss_pred ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEcc---------
Q 001176 954 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC--------- 1024 (1132)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~--------- 1024 (1132)
+. +.... ..|...|++++|+|
T Consensus 521 ~~-----~~~~~---------------------------------------------~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 521 EV-----KTSRW---------------------------------------------AFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EE-----EECCS---------------------------------------------CCCSSCEEEEEECCCC------C
T ss_pred cc-----eeEee---------------------------------------------cCCCCceeEEEEcCccccccccc
Confidence 52 11111 11578899999999
Q ss_pred -CCCEEEEEecCCcEEEEeCCCc-ceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1025 -DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1025 -dg~~las~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
++++||+++.||.|++||+.++ +.+..+ .+|...+.+++|+| ++. |++++.||.|++|++..
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----------NAHKDGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEET-----------TSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechhh-----------hcCccceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999987 555544 37889999999999 777 99999999999999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-58 Score=608.00 Aligned_cols=570 Identities=16% Similarity=0.248 Sum_probs=472.9
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987665 6789999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
|+.+++.+..+.+|...|.+++|++..++.++++++.|+.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999999877789999999999999999999999999999999999999999999999985
Q ss_pred CCCCCeEEEEeCCCCceeeeecccc------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFR------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1132)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++..+..+.. .
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 7889999999988776654321 12577899999999999887 78999999999998887763 2
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCC
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 707 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 707 (1132)
+...|.+++|+|++.++++++.||.|++|++.++ .....+.+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~------------------------------------- 880 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRG------------------------------------- 880 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECC-------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCC-------------------------------------
Confidence 2348999999999999999999999999999877 43333332
Q ss_pred CCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEee
Q 001176 708 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 787 (1132)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 787 (1132)
|...|.+++|+|+|+.++++
T Consensus 881 ------------------------------------------------------------h~~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 881 ------------------------------------------------------------HLSWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp ------------------------------------------------------------CSSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------------CccceEEEEECCCCCEEEEE
Confidence 45667888888888888888
Q ss_pred cccceeEEEeeccccCCCCCcccc------------------ccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 788 ASNAVHKLWKWQRTERNPSGKATA------------------NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 788 ~~dg~i~vw~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
+.||.+++|++............. .....+++..++..... + ...+.+++|+|++
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL------P-EAQVSCCCLSPHL 973 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE------C-CSCEEEEEECTTS
T ss_pred eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEc------c-cCcEEEEEEcCCC
Confidence 888888888875422111000000 00111222223322221 2 5679999999999
Q ss_pred CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEE
Q 001176 850 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 850 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 928 (1132)
+++++|+ +|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFR 1051 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEE
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEE
Confidence 9999999 89999999999999999999999999999999 8999999999999999999998866 4568999999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceee
Q 001176 929 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRS 1006 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~ 1006 (1132)
|+|++ .+++++.|++|++||+.+++.. ....+|. ..+.+++|+|+|+++++ +.|+.|++||+ ++..+..
T Consensus 1052 ~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1052 LLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp ECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 99966 5788999999999999987743 2333444 57899999999999999 57999999999 5555544
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEE
Q 001176 1007 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1086 (1132)
Q Consensus 1007 ~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 1086 (1132)
+ .+|...|++++|+|||++||+|+.||.|++||+.+++.+..+..... .....+|...+.+++|+| ++.+|+++
T Consensus 1123 l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~-dg~~l~s~ 1196 (1249)
T 3sfz_A 1123 L---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSP-DSKTLVSA 1196 (1249)
T ss_dssp C---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECT-TSSCEEEE
T ss_pred e---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc--cccccccCceEEEEEECC-CCCEEEEC
Confidence 4 45789999999999999999999999999999999998776532211 111246888999999999 88899888
Q ss_pred eCCCcEEEEecCCCcccc
Q 001176 1087 MSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1087 ~~Dg~i~vW~~~~~~~~~ 1104 (1132)
+ |.|++||+.+++...
T Consensus 1197 ~--g~v~vwd~~~g~~~~ 1212 (1249)
T 3sfz_A 1197 G--GYLKWWNVATGDSSQ 1212 (1249)
T ss_dssp S--SSEEEBCSSSCBCCC
T ss_pred C--CeEEEEECCCCceee
Confidence 5 999999999988543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-55 Score=552.23 Aligned_cols=602 Identities=10% Similarity=0.059 Sum_probs=436.5
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 337 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 337 ~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
...+.|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 33445899999999999998 79999999999999987765432 224788999999999
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE---------
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 487 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~--------- 487 (1132)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ +|++|+.||.|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 343 678999999999999 8999999999999999998764
Q ss_pred --EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCeEEEEEEc
Q 001176 488 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 547 (1132)
Q Consensus 488 --~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 547 (1132)
..+.+|.++|.+++|+|.. +..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 2346799999999999853 3689999999999 9999988877776655 4679999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCceeee--ec---cc------------cCCceEEEEEe----CCC-CEEEEEEc
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFD----TTR-NRFLAAGD 605 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~----~~~-~~l~~~~~ 605 (1132)
|+|++|++++. |+.|++||+++++++.. +. .| ....|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 78899999999887653 21 22 12269999996 443 45666765
Q ss_pred C-----CeEEEEECC------------------CCeeEEEEeCCCCCCCcceEEEcC----------CCCEEEEEeCCCc
Q 001176 606 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 652 (1132)
Q Consensus 606 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~ 652 (1132)
+ ..+.+|++. +.+....+... +...|..+.+.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899842 22233444321 123677777755 3447889999999
Q ss_pred EEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccc
Q 001176 653 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 732 (1132)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1132)
|++|++.++.........+... . +... .
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l-~-----------------~~~~----------------------------------~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL-S-----------------WLRP----------------------------------L 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG-T-----------------TBTT----------------------------------B
T ss_pred EEEEECCCCCcccccccCCCcc-c-----------------ccCC----------------------------------C
Confidence 9999997763322221111100 0 0000 0
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccc
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
... +...+...++|+......... . .+-.+|...+.+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~~-~~~s~~~~~~w~~~~~~~~~~--~--~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~------ 472 (902)
T 2oaj_A 404 ATT-SMAASVPNKLWLGALSAAQNK--D--YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN------ 472 (902)
T ss_dssp EEE-EEEEEEEHHHHHHHHHTTBCC--C--CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT------
T ss_pred eeE-EEEEEcCHHHHHHHHhcccCC--C--CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC------
Confidence 000 000011123344221100000 0 11234667788899999999999999999999999865421100
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCC-----------------------
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----------------------- 868 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~----------------------- 868 (1132)
..+... +...+ +..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ---~~~~~~----l~~~~-~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 473 ---ASFEVN----LSRTL-NKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp ---BCEEEE----HHHHT-TCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred ---ceEEee----chhhc-CCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence 000000 00000 1136 88999999999999999999 999999999865
Q ss_pred ----------------------eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee-----eec-cc
Q 001176 869 ----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-GH 920 (1132)
Q Consensus 869 ----------------------~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h 920 (1132)
+++.++.+|.+.|++++|+| +| +||+|+.|++|+|||+.++..+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 34678889999999999999 88 99999999999999998876653 343 89
Q ss_pred cCCeeEEEEc-----CCC---CEEEEEcCCCcEEEEEC---CCcccccceeeeCCCCCCC--CCCCceeEE-EC------
Q 001176 921 QNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQS--PLVGETKVQ-FH------ 980 (1132)
Q Consensus 921 ~~~V~~l~~s-----pdg---~~l~s~~~D~~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s------ 980 (1132)
.+.|++|+|+ ||| ++|++++.|++|++||+ .+++.... +.+|.. ....|..++ |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~ 696 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ-----LMDITNVTSKGPIHKIDAFSKETKSS 696 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE-----EEEEEECCSSCCCCEEEEEETTTCCB
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE-----ecCceecCCCCceEEEEeEecCCCCc
Confidence 9999999999 886 89999999999999999 66653221 112210 013455554 54
Q ss_pred ----------------CCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEE---E------EccCCCEEEEEec
Q 001176 981 ----------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFC 1034 (1132)
Q Consensus 981 ----------------~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i---~------~s~dg~~las~~~ 1034 (1132)
++|..| ++.+..|++|++ ++++..... .|...+.++ . |+++|..|++++.
T Consensus 697 ~~a~~~~~~~l~~~~~~~~~~l-~~~~~~ir~~~~~~~k~~~k~~---~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
T 2oaj_A 697 CLATIPKMQNLSKGLCIPGIVL-ITGFDDIRLITLGKSKSTHKGF---KYPLAATGLSYISTVEKNNDRKNLTVIITLEI 772 (902)
T ss_dssp CBCBHHHHHGGGGTCCCCEEEE-EECSSEEEEECTTCCCEEEEEC---SSCEEEEEEEEEEEECSSSCEEEEEEEEEEET
T ss_pred ccCCHHHHhccCCCCCCCeEEE-EEeccceEEEeCccccceeeEc---ccceeeeEEEEEEeccccccccCceEEEEEeC
Confidence 455444 445889999999 667765542 234556665 6 7899999999999
Q ss_pred CCcEEEEeCCCcceecccCCCc
Q 001176 1035 DGAIGVFDAETLRFRCRIGPSA 1056 (1132)
Q Consensus 1035 dg~i~vwd~~~~~~~~~~~~~~ 1056 (1132)
||+|++|++.+++++..+....
T Consensus 773 ~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 773 NGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp TSEEEEEETTTCCEEEEEECSS
T ss_pred CCcEEEEECcchHHHhhccCCc
Confidence 9999999999999998876543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-55 Score=534.72 Aligned_cols=556 Identities=14% Similarity=0.183 Sum_probs=452.1
Q ss_pred ccCCcceeeecCCCCCCceecc------CCccc----ceEEeec-CCCC-eeEEEEcc--CCCeEEEEEcCCCcEEEEec
Q 001176 308 RTGQSDEVSFAGVAHTPNVYSQ------DDLTK----TVVRTLN-QGSN-VMSMDFHP--QQQTILLVGTNVGDISLWEV 373 (1132)
Q Consensus 308 ~~~~v~~~~~~~~g~~~~~~~~------d~~~~----~~~~~l~-h~~~-V~~~~~sp--dg~~lla~g~~dg~v~iwd~ 373 (1132)
+...+.+++|+|+|+.+++... +..++ +....+. |... |++++|+| +++ +|++|+.||.|+|||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeC
Confidence 3457889999999998877652 22344 6777777 9999 99999999 998 7999999999999999
Q ss_pred CCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecc
Q 001176 374 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAH 449 (1132)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h 449 (1132)
.+++...... ......+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+. .+.+|
T Consensus 96 ~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~ 159 (615)
T 1pgu_A 96 TFDKESNSVE-----------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGH 159 (615)
T ss_dssp EEEGGGTEEE-----------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSC
T ss_pred CCCccccccc-----------ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecC
Confidence 7652110000 00011255799999999999999999999987 6888888 444333 67899
Q ss_pred cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC---CeEEEEeeccCCccEEEEEecCCeEEEEEcC
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~ 526 (1132)
...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ ++.+|++++.||.|++||++
T Consensus 160 ~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 160 SQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp SSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETT
T ss_pred CccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECC
Confidence 999999999999975 699999999999999999999999999999 9999999885 14899999999999999999
Q ss_pred CCCceEEe-c---CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc---CCceEEEEEeCCCCE
Q 001176 527 YLGSRVDY-D---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR---KRSLGVVQFDTTRNR 599 (1132)
Q Consensus 527 ~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 599 (1132)
+++....+ . .|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...+.++.|. ++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR 311 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence 98888887 5 788999999999 9999999975 7889999999999998888762 2257778786 8899
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCC
Q 001176 600 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 679 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1132)
+++++.||.|++||+.+++.+..+..|.. .|.+++| |+ +++++.||.|++|++. .+. ..|...+..+
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~~~~~~v~~~- 378 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-NP---LISGSYDGRIMEWSSS----SMH--QDHSNLIVSL- 378 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-TT---TEEEETTSCEEETTTT----EEE--CCCCSCEEEE-
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCC--CEEEEEe-cC---cEEECCCCeEEEEEch----hhc--CcccCceEEE-
Confidence 99999999999999999999988887654 8999999 88 9999999999999986 122 3443332211
Q ss_pred CCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcce
Q 001176 680 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 759 (1132)
Q Consensus 680 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 759 (1132)
.+.++..++.++.++.+++|++......
T Consensus 379 ------------------------------------------------~~~~~~~l~~~~~d~~i~~~~~~~~~~~---- 406 (615)
T 1pgu_A 379 ------------------------------------------------DNSKAQEYSSISWDDTLKVNGITKHEFG---- 406 (615)
T ss_dssp ------------------------------------------------ECCSTTCCEEEETTTEEEETTEEEEECS----
T ss_pred ------------------------------------------------EECCCcEEEEEeCCCCEEEEEcccCccc----
Confidence 1112334455567799999998753221
Q ss_pred EEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCC
Q 001176 760 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 839 (1132)
Q Consensus 760 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~ 839 (1132)
..+..++++|++..++++ .++.+.+|+.. ++..+.. +. | ...
T Consensus 407 ----------~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~-~~---~-~~~ 448 (615)
T 1pgu_A 407 ----------SQPKVASANNDGFTAVLT-NDDDLLILQSF----------------------TGDIIKS-VR---L-NSP 448 (615)
T ss_dssp ----------SCEEEEEECSSSEEEEEE-TTSEEEEEETT----------------------TCCEEEE-EE---C-SSC
T ss_pred ----------CCceEEEEcCCCCEEEEe-CCCceEEEecc----------------------CCceeee-cc---c-CCC
Confidence 257889999999877776 78889998753 2222221 11 4 778
Q ss_pred eeEEEEeeCCCEEEEee--CCeEEEEECCCCeEE-EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 840 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
+.+++|+ ++++++++ |+.|++||+.+++.. ..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+..
T Consensus 449 ~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 449 GSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred ceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence 9999999 88888887 799999999988766 67788999999999999 899999999999999999999999999
Q ss_pred ecc-ccCCeeEEEEcC----------CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcE
Q 001176 917 LKG-HQNRITGLAFSP----------TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 985 (1132)
Q Consensus 917 l~~-h~~~V~~l~~sp----------dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 985 (1132)
+.+ |...|++++|+| ++++|++++.|+.|++||+.++.. .+.
T Consensus 526 ~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~----------------------- 578 (615)
T 1pgu_A 526 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK----IIK----------------------- 578 (615)
T ss_dssp CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC----CEE-----------------------
T ss_pred eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce----ech-----------------------
Confidence 988 999999999999 999999999999999999987521 111
Q ss_pred EEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 986 LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 986 l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
. ..+|...|++++|+||++ |++++.||+|++|++++
T Consensus 579 --------------------~---~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 579 --------------------A---LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --------------------E---TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred --------------------h---hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 1 134578899999999999 99999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=546.46 Aligned_cols=587 Identities=11% Similarity=0.103 Sum_probs=429.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+... . ..|..+|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 34799999999999999999999999999999988754332 2 35788999999999 77 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCeEEEEEEcCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSAD 549 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 549 (1132)
+.+++++..+. |...|++++|+|++ .+|++|+.||.|++||+++.... .....|.+.|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999998755 89999999999999999876643 123567789999999996
Q ss_pred C-CEEEEEecCCCCCCeEEEEeCCCCceeeeeccc-----------------cCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 550 G-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 550 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
+ ..+++++. ++.| +||+++++.+..+..+ +...|.+++|+|+|.+|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777753 7889 9999999998888765 1237999999999999999999999999
Q ss_pred EECCCCeeEEEEe-----CCC-----------CCCCcceEEEc----CCC-CEEEEEeCC-----CcEEEEEcCCcceee
Q 001176 612 WDMDNMNMLTTVD-----ADG-----------GLPASPRLRFN----KEG-SLLAVTTSD-----NGIKILANSDGVRLL 665 (1132)
Q Consensus 612 wd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s----~~~-~~l~~~~~d-----g~i~iw~~~~~~~~~ 665 (1132)
||+.+++++.... .+. +...|.+++|+ |++ .+|++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 9999998876422 121 23368999995 443 567777665 3677887421100 0
Q ss_pred eeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCcee
Q 001176 666 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 745 (1132)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 745 (1132)
. ..+.+....
T Consensus 317 ~----------------------------------------------------------------------~~s~~~~~~ 326 (902)
T 2oaj_A 317 S----------------------------------------------------------------------ITSYEGMKN 326 (902)
T ss_dssp G----------------------------------------------------------------------GCCHHHHHH
T ss_pred c----------------------------------------------------------------------ccchhhhhh
Confidence 0 000000001
Q ss_pred eeecCCCCCCCcceEEecCCcccccceEEEEEec----------CCceEEeecccceeEEEeeccccCCCC---------
Q 001176 746 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS--------- 806 (1132)
Q Consensus 746 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----------~g~~l~~~~~dg~i~vw~~~~~~~~~~--------- 806 (1132)
+|+-. ...+.+.+ .+...|..+.+.+ +...+++++.||.+++|++........
T Consensus 327 ~~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 327 YYANP-----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHHSC-----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hhcCc-----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 11100 00011100 1345566676654 344688888999999999854321100
Q ss_pred C--cc-----ccccccccccCCC---cCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEE--EE
Q 001176 807 G--KA-----TANVAPQLWQPPS---GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TM 873 (1132)
Q Consensus 807 ~--~~-----~~~~~~~l~~~~~---~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~ 873 (1132)
+ .. .......+|+... +.. ...+.+ | ...+..++|+||+++||+|+ |++|++||+.++... ..
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 0 00 0001112333110 111 112444 6 67788899999999999999 999999999887421 11
Q ss_pred e----e-----CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce--------------------------------
Q 001176 874 F----M-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-------------------------------- 912 (1132)
Q Consensus 874 ~----~-----~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-------------------------------- 912 (1132)
+ . +|...|++++|+| ++++||+|+.||+|+|||+.+++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 1 1 7889999999999 99999999999999999998762
Q ss_pred -------------eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC-CCCCCCCCceeEE
Q 001176 913 -------------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 978 (1132)
Q Consensus 913 -------------~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 978 (1132)
++..+.+|.+.|++|+||||| +||+|+.|++|++||+.+...+....+.... +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 367788999999999999999 9999999999999999886643221223343 665 6899999
Q ss_pred EC-----CCC---cEEEE-EeCCeEEEEeC----CCCceeecCCCC--CCCCCeEEEE-Ec-------------------
Q 001176 979 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1023 (1132)
Q Consensus 979 ~s-----~dg---~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~--~h~~~i~~i~-~s------------------- 1023 (1132)
|+ ||| ++|++ +.|++|++||+ ++++...+.... .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 57999999998 555555543321 2357787777 66
Q ss_pred ---cCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEE---E------eCCCCCCeEEEEeCCCc
Q 001176 1024 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI---A------PHPSEPNQIALGMSDGA 1091 (1132)
Q Consensus 1024 ---~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~------~~p~~~~~l~s~~~Dg~ 1091 (1132)
++|.+|+++ +..|+||++.+++...... .|...+..+ . |++ ++..|++.+.||+
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-----------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~ 775 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-----------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGH 775 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-----------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEc-----------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCc
Confidence 456555554 7899999999998875542 344445554 4 566 7789999999999
Q ss_pred EEEEecCCCcccc
Q 001176 1092 VHVVEPSDAELKW 1104 (1132)
Q Consensus 1092 i~vW~~~~~~~~~ 1104 (1132)
|++|++.+.+...
T Consensus 776 i~~~s~p~l~~~~ 788 (902)
T 2oaj_A 776 LRVFTIPDFKEQM 788 (902)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEEECcchHHHh
Confidence 9999999998443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=484.70 Aligned_cols=566 Identities=15% Similarity=0.222 Sum_probs=420.4
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
..+++. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 455666 999999999999998 689999999999999999876653 56799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 493 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h 493 (1132)
|++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.||.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987665 5778999999999999999 8999999999999999987 777888999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CeEEEEEEcC--CCCEEEEEecCCCCCCeEEEEe
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999883 33799999999999999998888777666555 7899999999 9999999974 78899999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE-EEEEeC
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LAVTTS 649 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~ 649 (1132)
+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEE
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEe
Confidence 999999999998877 899999999999999999999999999999999998887644 8999999999873 244455
Q ss_pred CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccc
Q 001176 650 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 729 (1132)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1132)
++.+.+|++..+.
T Consensus 292 ~~~~~~~~~~~~~------------------------------------------------------------------- 304 (814)
T 3mkq_A 292 DNGFTVLSLGNDE------------------------------------------------------------------- 304 (814)
T ss_dssp TTEEEEEECSCCS-------------------------------------------------------------------
T ss_pred CCCEEEEEcCCCC-------------------------------------------------------------------
Confidence 6678888865441
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccccee-EEEeeccccCCCCCc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSGK 808 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~ 808 (1132)
..+.++|+|+.+++++.+... .++...
T Consensus 305 -------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------- 332 (814)
T 3mkq_A 305 -------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAV--------- 332 (814)
T ss_dssp -------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEE---------
T ss_pred -------------------------------------------ceeEECCCCCEEEECcccccceeeeeee---------
Confidence 112344455544444333210 000000
Q ss_pred cccccccccccCCCcCcccccCC-CCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEe
Q 001176 809 ATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 887 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~~~~-~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 887 (1132)
....|+...+........ ...+ ...+.+++|+|||+++++++++.+.+|++...... +.+.+.+++|+
T Consensus 333 -----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~-----~~~~i~~~~~s 401 (814)
T 3mkq_A 333 -----IRGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNK-----AFGKCQDFVWG 401 (814)
T ss_dssp -----CCSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEE-----EEEECSEEEEC
T ss_pred -----cccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECcccccc-----CCCceEEEEEe
Confidence 000122222222111110 0113 66789999999999999999999999998765432 24568899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC---CEEEEEcCCCcEEEEECCCcccccceeeeCC
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQAP 964 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 964 (1132)
| +++++|+++.+|.|++|+ .+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++. +...
T Consensus 402 p-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~-----~~~~ 467 (814)
T 3mkq_A 402 P-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL-----VRRI 467 (814)
T ss_dssp T-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE-----EEEE
T ss_pred C-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE-----EEEE
Confidence 9 899999999999999995 345688889999999998 6899999999999999998763 3333
Q ss_pred CCCCCCCCCceeEEECCCCcEEEEE------eCCeEEEEeCCC-Cceee-----cCCCCCC----------CCCeEEEEE
Q 001176 965 AGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYDSKL-ECSRS-----WSPKDAL----------PAPISSAIY 1022 (1132)
Q Consensus 965 ~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~v~vwd~~~-~~~~~-----~~~~~~h----------~~~i~~i~~ 1022 (1132)
..+. ..++|+|||++|+++ .+..+.++.... ..... .....+. ...|.+..|
T Consensus 468 ~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w 541 (814)
T 3mkq_A 468 DVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKW 541 (814)
T ss_dssp SSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEE
T ss_pred ecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEE
Confidence 4332 389999999999997 555555553211 00000 0000000 122334444
Q ss_pred ccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1023 SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1023 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++.+.+|....+.......... .........+..+.|.+ ++..++....++.++.|++...+
T Consensus 542 ------------~~~~~i~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~~l~~~~ 603 (814)
T 3mkq_A 542 ------------VGDVFIFTTATNRLNYFVGGKT----YNLAHYTKEMYLLGYLA-RDNKVYLADREVHVYGYEISLEV 603 (814)
T ss_dssp ------------ETTEEEEECTTSEEEEEETTEE----EEEEECSSCCEEEEEEG-GGTEEEEECTTCCEEEEECCHHH
T ss_pred ------------eCCEEEEEcCCCeEEEEeCCee----EEEEECCccEEEEEEEe-cCCEEEEEcCCCCEEEEEECcHH
Confidence 3444455443222211111000 00111223444566666 67788888899999999986544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=466.52 Aligned_cols=466 Identities=15% Similarity=0.186 Sum_probs=380.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++|+.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987555 5778999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcC-CCCEEEEEec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 558 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 558 (1132)
+.+++.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++. .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998855 89999999999999999987 45567788999999999999 8889999875
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..|.. .|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 788999999998888888877755899999999 999999999999999999999999999887754 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|+++++++++.||.|++||+.++ +....+..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~---------------------------------------------- 268 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV---------------------------------------------- 268 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec----------------------------------------------
Confidence 9999999999999999999999876 33332221
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE-EeecccceeEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKL 795 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~v 795 (1132)
+...+.+++|+|+|..+ ++.+.++.+.+
T Consensus 269 ---------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 269 ---------------------------------------------------GLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp ---------------------------------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred ---------------------------------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 34568899999998754 66677777888
Q ss_pred EeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CC---eEEE------EEC
Q 001176 796 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FNM 865 (1132)
Q Consensus 796 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg---~i~v------wd~ 865 (1132)
|++. .....++++|+|+.+++++ +. .+.. |++
T Consensus 298 ~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 298 LSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp EECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred EEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 8642 2234578899999999876 32 1222 233
Q ss_pred CCCeE----EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcC
Q 001176 866 MTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 866 ~~~~~----~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
..+.. ...+..+...+.+++|+| +++++++++ ||.+.+|++...... +.+.|.+++|+|+++++++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECT
T ss_pred ccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeC
Confidence 33322 233455667788899999 888888887 788899987544322 3456788888888888888888
Q ss_pred CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEE
Q 001176 942 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAI 1021 (1132)
Q Consensus 942 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~ 1021 (1132)
|+.|++|+.-. +|...+.+++
T Consensus 413 ~g~v~l~~~~~-----------------------------------------------------------~~~~~v~~~~ 433 (814)
T 3mkq_A 413 TGQIKYYKNFK-----------------------------------------------------------EVTSWSVPMH 433 (814)
T ss_dssp TCCEEEEETTE-----------------------------------------------------------ECTTCCCCCS
T ss_pred CCcEEEEECCC-----------------------------------------------------------CccceEEcCC
Confidence 88888885221 1244566777
Q ss_pred EccCC---CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEE------eCCCcE
Q 001176 1022 YSCDG---LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG------MSDGAV 1092 (1132)
Q Consensus 1022 ~s~dg---~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~------~~Dg~i 1092 (1132)
|+||| ++|++++.||.|++||+.+++.+..+. .|.. .+.|+| ++++|+++ +.|..+
T Consensus 434 ~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----------~~~~---~v~~s~-dg~~la~~~~~~~~~~~~~~ 498 (814)
T 3mkq_A 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-----------VNAK---DVIWSD-NGELVMIVNTNSNGDEASGY 498 (814)
T ss_dssp SCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-----------SCEE---EEEECT-TSSEEEEEECCCSSCSCSEE
T ss_pred cCccceecceEEEEecCCEEEEEECCcCcEEEEEe-----------cCCC---EEEEcC-CCCEEEEEEcCcccCCceEE
Confidence 88887 678889999999999999999887775 2322 899999 88999999 666666
Q ss_pred EEEe
Q 001176 1093 HVVE 1096 (1132)
Q Consensus 1093 ~vW~ 1096 (1132)
.+|.
T Consensus 499 ~~~~ 502 (814)
T 3mkq_A 499 TLLF 502 (814)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=413.88 Aligned_cols=283 Identities=20% Similarity=0.359 Sum_probs=263.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|.+.|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|.+.|.+++|+|+|++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 788999999999998 799999999999999999876553 678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++.++.+|...|.+++
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999887655 6789999999999999999 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC--------------------CCEEEEEecCCC
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 561 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~~ 561 (1132)
++++ +.++++++.|++|++||+.+......+..|...|.+++|+|+ |.+|++++.
T Consensus 242 ~~~~--g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQD--GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCC--CCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 9774 489999999999999999999998899999999999999996 678999875
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
|+.|++||+++++++..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 78899999999999999999887 899999999999999999999999999999999999987755 79999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001176 642 SLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~ 658 (1132)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=361.06 Aligned_cols=294 Identities=19% Similarity=0.311 Sum_probs=263.9
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
......++. |.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 345567777 999999999999998 799999999999999998876543 45689999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCc-eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+|+|+|++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987642 233446789999999999999875 889999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...|.+++|+|++ .++++|+.|+.|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 181 ~~h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 9999999999998854 89999999999999999999999999999999999999999999999985 78899999
Q ss_pred CCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 571 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+++++.+..+.... ...|.+++|+|+++++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|+|.+|++|+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcC
Confidence 99988877765332 22689999999999999999999999999999999999987754 8999999999999999999
Q ss_pred CCcEEEEE
Q 001176 650 DNGIKILA 657 (1132)
Q Consensus 650 dg~i~iw~ 657 (1132)
||.|++||
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=360.18 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=263.8
Q ss_pred cceEEeec-CCCCeeEEEEccC----CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCe
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQ----QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 408 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spd----g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 408 (1132)
+...+.+. |.+.|++++|+|+ ++ +|++|+.|++|+||++.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 44455665 9999999999985 44 799999999999999987643211 1267899999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
.+++|++++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+++++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987655 5678888999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+..|...|.+++|+|++ .+|++++.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999998754 89999999999999999999888899999999999999999999999975 788999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
||+++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+++++..+..|.. .|.+++|+|++++|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEe
Confidence 99999999999999887 899999999999999999999999999999999999987654 899999999999999999
Q ss_pred CCCcEEEEEc
Q 001176 649 SDNGIKILAN 658 (1132)
Q Consensus 649 ~dg~i~iw~~ 658 (1132)
.||.|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=361.99 Aligned_cols=295 Identities=17% Similarity=0.277 Sum_probs=263.8
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
....++. |.+.|++++|+|+++ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 4566777 999999999999998 699999999999999988776542 4458889999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCc---eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGE---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~---~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+|+|++||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++||+++++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122335678999999999999998 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...|.+++++|..++.+|++|+.||+|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998877899999999999999999999999899999999999999999999999985 78899999
Q ss_pred CCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 571 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+++++.+..+..+. ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcC
Confidence 99988777665432 22688999999999999999999999999999999988887754 8999999999999999999
Q ss_pred CCcEEEEE
Q 001176 650 DNGIKILA 657 (1132)
Q Consensus 650 dg~i~iw~ 657 (1132)
||+|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=350.01 Aligned_cols=292 Identities=17% Similarity=0.306 Sum_probs=255.8
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
+..+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.++..+.. +..|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 4456777 999999999999998 699999999999999998876543 5679999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecC
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 492 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~ 492 (1132)
+|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999988665 6789999999999999999 8999999999999999987 55678899
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCeEEEEEEcC--CCCEEEEEecCCCCCCeEEEE
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 569 (1132)
|...|.+++|+|. ++.+|++|+.|++|++||++.......+. .+...+..+.|+| ++++|++++. |+.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999884 33799999999999999998877666554 4557899999986 7789999985 8889999
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC--EEEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 647 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~ 647 (1132)
|+++++++..+.+|.. .|.+++|+|++++|++|+.||.|++||..+++.+..+..+.. .+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEe
Confidence 9999999999999987 899999999999999999999999999999999999986643 789999999775 57777
Q ss_pred eCCCcEEEEEcCC
Q 001176 648 TSDNGIKILANSD 660 (1132)
Q Consensus 648 ~~dg~i~iw~~~~ 660 (1132)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 655 567777654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=366.88 Aligned_cols=305 Identities=17% Similarity=0.284 Sum_probs=264.0
Q ss_pred CcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 331 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 331 ~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.... +.+|...|.
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~ 112 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVM 112 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCC
T ss_pred cceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEE
Confidence 34456778888 999999999999998 699999999999999998876543 567999999
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
+++|+|+|++||+|+.|+.+++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++
T Consensus 113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCC
T ss_pred EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCc
Confidence 999999999999999999999999975321 1122357799999999999998654 69999999999999999999
Q ss_pred EEEEe-----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 486 KQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 486 ~~~~~-----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
.+..+ .+|...|.++++++. ++.++++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~- 269 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD- 269 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS-
T ss_pred EEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC-
Confidence 98887 679999999999764 448999999999999999984 4667788899999999999999999999975
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccC------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC--CCCCCC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLPA 631 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~ 631 (1132)
|+.|++||+++++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||..+++.+..+.. ..+...
T Consensus 270 ---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 270 ---DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp ---SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred ---CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc
Confidence 78899999999998888765432 1488999999999999999999999999999988877732 234558
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|.+++|+|+|.+|++|+.||+|++|++...
T Consensus 347 v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 347 ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=365.16 Aligned_cols=247 Identities=21% Similarity=0.353 Sum_probs=231.5
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.++|++++|+|++++|++|+.||+|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987665 6889999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++++.++.+|...|.+++|+|++ .+|++++.|++|++||++++.....+..|...|.+++++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999998854 89999999999999999999999999999999999999999999999985
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC--------------------CCEEEEEEcCCeEEEEECCCCeeE
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.++++|+.|+.|++||+.++.++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78899999999999999998887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+..|.. .|.+++|+|+|++|++|+.||.|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99987754 7999999999999999999999999998776
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=350.15 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=258.3
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..+..+|. |.+.|++++|+|++..+|++|+.|++|++|++........ .....+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34566777 9999999999998745899999999999999875432211 01112678999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+. ++++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987654 6789999999999999999 89999999999999985 567788999
Q ss_pred CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 493 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 493 h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
|...|.++++.|.. ++..+++++.|+.|++||++.......+.+|...|.+++|+|+|++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998753 3458999999999999999998888889999999999999999999999985 888999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC------CCCCcceEEEcCCCC
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 642 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~ 642 (1132)
||+.+++.+..+..+. .+.+++|+|++.++++++. +.+++|++.....+..+..+. +...+.+++|+|||+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999998887653 7999999999998888764 569999999888777765331 234578999999999
Q ss_pred EEEEEeCCCcEEEEEcCCc
Q 001176 643 LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~ 661 (1132)
+|++|+.||.|++|++.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=347.85 Aligned_cols=288 Identities=15% Similarity=0.280 Sum_probs=259.2
Q ss_pred cCCCCcCeEEEEEcCC----CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 401 LNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
+.+|.+.|.+++|+|+ +++|++|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 4679999999999985 67999999999999999987643 23346889999999999999999 89999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
++||+.+++.+..+..|...+.+++|+|++ .+|++++.||.|++||++++.....+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTS--SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCC--CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999998754 899999999999999999999988888899999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ++.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..|.. .|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEE
Confidence 85 77899999999999999999887 899999999999999999999999999999999988887754 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|++.+|++++.|++|++||+.++ +....+.+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~---------------------------------------------- 288 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFD---------------------------------------------- 288 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC----------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcC----------------------------------------------
Confidence 9999999999999999999999887 44443332
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 796 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 796 (1132)
|...|.+++|+|+++.|++++.||.|++|
T Consensus 289 ---------------------------------------------------h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 289 ---------------------------------------------------HQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp ---------------------------------------------------CSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ---------------------------------------------------CCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678999999999999999999999999
Q ss_pred ee
Q 001176 797 KW 798 (1132)
Q Consensus 797 ~~ 798 (1132)
|.
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 86
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=350.82 Aligned_cols=303 Identities=17% Similarity=0.241 Sum_probs=250.0
Q ss_pred cceEEeec-CCC-CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 334 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~-~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
..++.++. |.+ .|++++|||+|+ +||+|+.|++|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 35677777 777 999999999998 699999999999999987753321 01146899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eEEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 488 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~~~~ 488 (1132)
+|+|+|++||+|+.|++|++|++..+.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ +++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23446889999999999999999 8999999999999999876 3467
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+.+|...|.+++|+|+|++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999998865 8999999999999999987653 4577889999999999999999999985 7889
Q ss_pred EEEeCCCC---------------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----eEEE---Ee
Q 001176 567 VEWNESEG---------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTT---VD 624 (1132)
Q Consensus 567 ~~wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~---~~ 624 (1132)
++||.... +++..+.+.+...|.+++|+|++..+++++.|+.|++|+...+. .... ..
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 99996321 23445566444489999999999999999999999999987542 1111 11
Q ss_pred CCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCcc
Q 001176 625 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
...+...|++++|+|++ .+|++|+.||+|++|++.+++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 22345589999999987 599999999999999998874
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=347.97 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=227.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.++..+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999887655 5778999999999999999 899999999999999
Q ss_pred CCCC----eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 481 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 481 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+.++ +....+.+|...|.++.|+++ ..+++++.|++|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 456778899999999999865 359999999999999999999888999999999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..+.....|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 85 78899999999999999999887 89999999999999999999999999999999888876555445799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+|+|++|++|+.||.|++||+.++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998776
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=350.11 Aligned_cols=297 Identities=13% Similarity=0.122 Sum_probs=239.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccc-cccccccCCCCcCeEEEEEcCCCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-PLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
|...|.+++|||||+ +|++++ |+++++||.... +|+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 556799999999998 677776 788888874311 111000000 00001123467789999999985 68
Q ss_pred EEEeCCCeEEEEEecCCCceeee-eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 34568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
++|++++. .+|++++.|++|++||+++++....+. .+...+.+++|+|++ +++++++. ++.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99988653 588999999999999999988877654 345579999999954 56777764 78899999999999
Q ss_pred eeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC-EEEEEeCCCcEE
Q 001176 577 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 654 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~ 654 (1132)
+..+.+|.. .|.+++|+|++ ++|++|+.|+.|++||+.+++.+. +..| ...|++++|+|++. +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999987 89999999998 578899999999999999987654 4555 45899999999886 577899999999
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=355.80 Aligned_cols=292 Identities=13% Similarity=0.138 Sum_probs=239.1
Q ss_pred CCCCeeEEEEccCCCeEEEEEcC------CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+|
T Consensus 41 H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s~ 104 (357)
T 4g56_B 41 MEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWVS 104 (357)
T ss_dssp CCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEET
T ss_pred ccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEcC
Confidence 888999999999998 6889887 6789999887775433211 01346889999999999
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceee-eeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 494 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 494 (1132)
+++++ +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|.
T Consensus 105 d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h~ 181 (357)
T 4g56_B 105 EKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAHS 181 (357)
T ss_dssp TTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence 98655 577899999999998765432 224558999999999999999 89999999999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
..|++++|++.++ .++++++.||+|++||+++++....+ ..+...+.+++|+|++ .+|++++. ++.|++||+
T Consensus 182 ~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd~ 256 (357)
T 4g56_B 182 SEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVNI 256 (357)
T ss_dssp SCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEES
T ss_pred CCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEEC
Confidence 9999999988654 58899999999999999988776544 3456689999999985 56777764 778999999
Q ss_pred CCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeC
Q 001176 572 SEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTS 649 (1132)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 649 (1132)
++++.+..+.+|.. .|.+++|+|++ ++|++++.|+.|+|||+++++.+..+ .| ...|++++|+| ++.+|++++.
T Consensus 257 ~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 257 KNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp SCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEEEEET
T ss_pred CCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEEEEcC
Confidence 99999999999887 89999999987 57889999999999999999887765 34 45899999998 8999999999
Q ss_pred CCcEEEEEcCCc
Q 001176 650 DNGIKILANSDG 661 (1132)
Q Consensus 650 dg~i~iw~~~~~ 661 (1132)
||+|++|++.+.
T Consensus 333 Dg~v~iW~~~~~ 344 (357)
T 4g56_B 333 DHKVLHHHLPSE 344 (357)
T ss_dssp TSCEEEEECC--
T ss_pred CCeEEEEECCCC
Confidence 999999999765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=357.51 Aligned_cols=305 Identities=14% Similarity=0.225 Sum_probs=251.5
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEec----CCCccccccceeeeeccccccccc-ccccCCCCcCeEEE
Q 001176 337 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQ-NALLNDAAISVNRC 411 (1132)
Q Consensus 337 ~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v 411 (1132)
+....|.+.|++++|+|+|+.+||+|+.||.|+||++ .+++.+.... ....+. .+.. .....+|.+.|.++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-IIAELR---HPFALSASSGKTTNQVTCL 114 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-EEEEEE---CCCCCC------CBCEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-cccccc---ccccccccccCCCCceEEE
Confidence 3444478999999999999846899999999999999 8776310000 000000 0000 00123478899999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEee
Confidence 9999999999999999999999 4444443 5778999999999999999 89999999999999999999999998
Q ss_pred CCCCC---------------eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 492 GHEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 492 ~h~~~---------------v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.+... +.+++|++. ..+++++.||.|++||+.+......+..|...|.+++|+|++++|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp CC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 88777 999999875 469999999999999999998888888999999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ++.|++||+.+++.+..+..|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .|.+++
T Consensus 266 ~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~ 337 (425)
T 1r5m_A 266 SD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGR 337 (425)
T ss_dssp ET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEE
T ss_pred cC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEE
Confidence 75 77899999999999999988776 89999999999 999999999999999999999999887654 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
|+|++++|++++.||.|++|++.++.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999999999999998763
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=353.22 Aligned_cols=318 Identities=15% Similarity=0.191 Sum_probs=229.2
Q ss_pred ccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 813 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 813 (1132)
.++...++.....|+++.... ..|...|.+++|+|||++|++++.|. +++||-
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~--------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG--------------- 70 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------
Confidence 344445557778888763211 23888999999999999999998743 244432
Q ss_pred ccccccCCCcCcccccC-CCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEE----EeeCCCCCeEEEEEeC
Q 001176 814 APQLWQPPSGTLMTNDI-NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLAFHP 888 (1132)
Q Consensus 814 ~~~l~~~~~~~~~~~~~-~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~sp 888 (1132)
.+++|+..++....... ....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+|
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 71 SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 12344444433222111 11126 788999999999988776669999999998876543 3447999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccccceeeeCCCCC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 967 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 967 (1132)
++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++...... ...+
T Consensus 150 -dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~ 225 (357)
T 4g56_B 150 -DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS 225 (357)
T ss_dssp -SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc
Confidence 899999999999999999999999999999999999999999885 78999999999999999876433211 1112
Q ss_pred CCCCCCceeEEECCCC-cEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeC
Q 001176 968 QSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 968 ~~~~~~v~~~~~s~dg-~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg-~~las~~~dg~i~vwd~ 1043 (1132)
. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++||+|+.||+|+|||+
T Consensus 226 ~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 226 D---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp C---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred c---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 2 568899999985 56776 46899999999 66665555 4568999999999997 57999999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++++.+..+ +|...|.+++|+|.++.+|+|++.||+|++|++.+..
T Consensus 300 ~~~~~~~~~------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 300 DFSEVFRDL------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEEC------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCcEeEEC------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999876543 6788999999999888999999999999999997754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=347.38 Aligned_cols=294 Identities=13% Similarity=0.150 Sum_probs=228.5
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCc-ccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-MTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~h~~~~v~~~~~s 846 (1132)
+...|.+++|+|||+.|++++ |+++++||... .+|+...... .........| ...|.+++|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s 91 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQT-EAGVADLTWV 91 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEE-SSCEEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeecc-CCCEEEEEEe
Confidence 556799999999999777665 78889987432 1111110000 0000001113 6789999999
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEEEE----eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecccc
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 921 (1132)
||+. +++|+ ||+|+|||+.+++.+.. +.+|.+.|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.
T Consensus 92 ~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 92 GERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp TTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9965 55666 99999999998875543 458999999999999 89999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-CcEEEE-EeCCeEEEEe
Q 001176 922 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV-VHESQISVYD 998 (1132)
Q Consensus 922 ~~V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~v~vwd 998 (1132)
+.|++++|+|++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|+ +++|++ +.|+.|++||
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999984 789999999999999998764332111 1111 45789999995 456777 4689999999
Q ss_pred C-CCCceeecCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeC
Q 001176 999 S-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076 (1132)
Q Consensus 999 ~-~~~~~~~~~~~~~h~~~i~~i~~s~dg-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1076 (1132)
+ +++++..+ .+|...|++++|+||+ ++||+|+.||+|+|||+.+++.+. + .+|...|.+++|+
T Consensus 244 ~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-----------~~H~~~V~~v~~s 308 (344)
T 4gqb_B 244 TKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-----------QAHRDFVRDATWS 308 (344)
T ss_dssp SCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-----------CCCSSCEEEEEEC
T ss_pred CCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-----------cCCCCCEEEEEEe
Confidence 9 66666665 4568999999999998 579999999999999999987642 2 3888999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1077 PSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1077 p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
|++..+|++++.|++|++|++.+..
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9666678899999999999997754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=334.69 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=257.3
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
....++. |.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 4455666 999999999999998 699999999999999988876542 5689999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 493 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 493 (1132)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6788999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
..+|.+++|++++ .++++++.||.|++||+++.+....+. .+...+..++|+|++++|++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998754 899999999999999999888776554 45568999999999999999975 7889999999
Q ss_pred CCceeeeeccccCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe--
Q 001176 573 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 648 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 648 (1132)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998876522 23233346788999999999999999999999999987754 899999999999999987
Q ss_pred CCCcEEEEEcC
Q 001176 649 SDNGIKILANS 659 (1132)
Q Consensus 649 ~dg~i~iw~~~ 659 (1132)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=335.55 Aligned_cols=254 Identities=18% Similarity=0.302 Sum_probs=228.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887554 6778999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcC-CCCEEEEEec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 558 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 558 (1132)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999998865 8999999999999999988744 456788999999999999 6789999985
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
|+.|++||+.++.....+..+....+..+.|+| ++.++++++.|+.|++||+++++++..+..|.. .|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEE
Confidence 888999999988877777655544788899987 678999999999999999999999999988754 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
|+|++.+|++|+.||+|++||..++ ++.+.+
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~ 266 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL 266 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-ceeeec
Confidence 9999999999999999999999887 444443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=353.29 Aligned_cols=342 Identities=13% Similarity=0.167 Sum_probs=283.0
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC----CCCe------EEEEecC----
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG---- 492 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~----~~~~------~~~~~~~---- 492 (1132)
..+.+|+++...... ....|.+.|.+++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 1r5m_A 25 SIDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL 100 (425)
T ss_dssp ---------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC
T ss_pred cccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCccccccccccccccccccc
Confidence 345678876543322 33457799999999999985 6899999999999999 8888 4555554
Q ss_pred ------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 493 ------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 493 ------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
|...|.+++|+|+ +.+|++++.||.|++|| .++.....+..|...|.+++|+|++++|++++. ++.|
T Consensus 101 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i 173 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWSHD--GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVT 173 (425)
T ss_dssp C------CBCEEEEEECTT--SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCE
T ss_pred cccccCCCCceEEEEEcCC--CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeE
Confidence 6889999999884 48999999999999999 566777788889999999999999999999975 7789
Q ss_pred EEEeCCCCceeeeeccccCCc---------------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 567 VEWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
++||+.+++.+..+..+.. . +.+++|++++ .+++++.+|.|++||+.+++.+..+..+.. .
T Consensus 174 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~ 249 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG--P 249 (425)
T ss_dssp EEEETTTTEEEEEECCC----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS--C
T ss_pred EEEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC--c
Confidence 9999999999988887665 4 8889999874 688899999999999999998888876644 8
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
|.+++|+|++++|++++.||.|++||+.++ +....
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~-------------------------------------------- 284 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNC-------------------------------------------- 284 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSB-SCSEE--------------------------------------------
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCC-ccceE--------------------------------------------
Confidence 999999999999999999999999998655 11000
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
T Consensus 285 -------------------------------------------------------------------------------- 284 (425)
T 1r5m_A 285 -------------------------------------------------------------------------------- 284 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
+.+ | ...|.+++|+|++ ++++++ |+.|++||+.+++.
T Consensus 285 --------------------------------------~~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 285 --------------------------------------FYG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp --------------------------------------ECC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE
T ss_pred --------------------------------------ecC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE
Confidence 000 4 6678999999999 888887 89999999999999
Q ss_pred EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce--------------------eeeeeccccC--CeeEEE
Q 001176 871 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLA 928 (1132)
Q Consensus 871 ~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~ 928 (1132)
+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++
T Consensus 323 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 323 LALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred eEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 999999999999999999 89999999999999999999988 8899999977 999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECC
Q 001176 929 FSPTLNALVSSGADAQLCMWSID 951 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~ 951 (1132)
|+|++++|++++.||.|++|+++
T Consensus 402 ~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999986
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=340.83 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=225.5
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 66899999999999999999999999999999998877554 5667889999999999999 899999999999999
Q ss_pred CCCC------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC--CCCE
Q 001176 481 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 552 (1132)
Q Consensus 481 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 552 (1132)
+... .....+.+|...|.+++|++++ ..|++++.|++|++||+++++....+.+|...|.+++++| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 3456777899999999998754 7999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
|++++. |+.|++||+++++++..+.+|.. .|.+++|+|++.+|++++.|+.|++||+++++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999985 78899999999999999999887 8999999999999999999999999999999888877665544568
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+++|+|++.+|++|+.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999999877
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=347.35 Aligned_cols=309 Identities=15% Similarity=0.248 Sum_probs=251.4
Q ss_pred ceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 335 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
++...+.|.+.|+|++|||||+ +||+|+ ++.++||++.+++.+....-..-.... ...........+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD-PENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccccc-cccccccccCCCceeEEEEEEC
Confidence 4456677999999999999999 688876 789999999998765421000000000 0000000111244469999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 494 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 494 (1132)
|||++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+++++....+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999876544 6789999999999999999 89999999999999999999888876 56
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
..+.+++++|. ++.+|++++.|+.|++||++++.....+ .+|...|.+++|+|+|++|++++. |+.|+
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 78999999873 4489999999999999999988776655 567889999999999999999985 88899
Q ss_pred EEeCCCC------------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001176 568 EWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 635 (1132)
Q Consensus 568 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1132)
+||+++. .+...+.+|.. .|.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEE
Confidence 9999753 34566778876 899999999999999999999999999999999999987754 79999
Q ss_pred EEcC------CCCEEEEEeCCCcEEEEEcCC
Q 001176 636 RFNK------EGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 636 ~~s~------~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
+|++ ++++|++|+.||+|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9876 688999999999999999754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.09 Aligned_cols=298 Identities=15% Similarity=0.202 Sum_probs=234.4
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccc-cCCCCcCeEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL-LNDAAISVNRC 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~v 411 (1132)
.+++.++. |.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ ..+|...|.++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~----------------~~~~~~~h~~~v~~v 64 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI----------------DVLDETAHKKAIRSV 64 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE----------------EEECTTCCCSCEEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE----------------EEEecCCccCCEEEE
Confidence 34567777 9999999999998 699999999999999987532110 001 12499999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCC----ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC----
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---- 483 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---- 483 (1132)
+|+|++++||+|+.|++|++||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999986432 1233446789999999999999999 899999999999999943
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCeEEEEEEcCC--CCEEEEEecC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGTS 559 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~ 559 (1132)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... .....+.+|...|.+++|+|+ +.+|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 35678899999999999998854 89999999999999998766 456678899999999999998 678999875
Q ss_pred CCCCCeEEEEeCCCC--------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee--EEEEeCCCCC
Q 001176 560 KEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGL 629 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~ 629 (1132)
|+.|++||+..+ .....+.+.+...|.+++|++++ +|++++.||.|++||..+++. .... ...+.
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~ 294 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHG 294 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTT
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccc
Confidence 788999998765 34455555233389999999765 899999999999999988742 3222 12233
Q ss_pred C-CcceEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 001176 630 P-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 630 ~-~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
. .|.+++|+| ++++|++|+.||+|++|++.+
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3 689999999 789999999999999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=331.77 Aligned_cols=247 Identities=19% Similarity=0.289 Sum_probs=221.0
Q ss_pred cCCCCcCeEEEEEcCCC-CeEEEEeCCCeEEEEEecCCCce--eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 401 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg-~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 77999999999999965 89999999999999999754321 23446889999999999999999 899999999999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC------CC
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------GT 551 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~------~~ 551 (1132)
+||+.+++.+..+.+|...|.+++|++++ .+|++++.|++|++||++ ......+..|...|.+++++|. +.
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998754 899999999999999996 4566778889999999999985 44
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888875 78899999999999999999887 8999999999999999999999999999999999888764 36
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|.+++|+|++.+|++++.+ .+++|++...
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 9999999999999988765 6999999876
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=360.26 Aligned_cols=297 Identities=14% Similarity=0.266 Sum_probs=250.6
Q ss_pred cCCCCeeEEEEccCCCeEEEEE----------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
.+...|.+++|||+|+.++++| +.|+.|+|||+.+++.... + ....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEE
Confidence 3445799999999998789999 8899999999998763210 0 02358899999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCc-eeeeeeeecccCCEEEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe---
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--- 485 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~v~vwd~~~~~--- 485 (1132)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1133367889999999999998 66 89999999999999999886
Q ss_pred ---EEE---EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCeEEEEEEcCCC-CE
Q 001176 486 ---KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TR 552 (1132)
Q Consensus 486 ---~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~ 552 (1132)
... .+.+|...|.+++|+|++ +.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 333 346799999999998862 379999999999999999998888877776 6789999999997 57
Q ss_pred EEEEecCCCCCCeEEEEeCCCC-ceeeeec-cccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 629 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1132)
+++++.++ .++.|++||++++ ..+..+. +|.. .|.+++|+| ++++|++++.|+.|++||+.+++.+..+..|..
T Consensus 230 l~~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~- 306 (416)
T 2pm9_A 230 VATATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN- 306 (416)
T ss_dssp EEEEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-
T ss_pred EEEEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-
Confidence 77776421 1228999999986 6677777 7766 899999999 899999999999999999999999999987754
Q ss_pred CCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCc
Q 001176 630 PASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 630 ~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|.+++|+|++ .+|++++.||.|++|++.++
T Consensus 307 -~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 307 -WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp -CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred -ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 79999999998 89999999999999999876
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=350.83 Aligned_cols=294 Identities=15% Similarity=0.199 Sum_probs=253.6
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.+++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999886554 6788999999999999999 899999999999999
Q ss_pred CCCCe-------EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCeEEEEEEcC
Q 001176 481 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 548 (1132)
Q Consensus 481 ~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~ 548 (1132)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.++.....+ .+|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999988643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 549 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 549 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
+++++++++. |+.|++||++ .++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8899999985 7889999998 5577888999887 8999999999999999999999999999999998887654
Q ss_pred CC-----CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccc
Q 001176 627 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 701 (1132)
Q Consensus 627 ~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 701 (1132)
.. ...|.+++|+|+|++|++|+.||.|++||..++ +....+...
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~------------------------------ 339 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTL------------------------------ 339 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCS------------------------------
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecc------------------------------
Confidence 22 224899999999999999999999999998776 222221100
Q ss_pred cccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCC
Q 001176 702 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 781 (1132)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 781 (1132)
..+|...|.+++|+|+|
T Consensus 340 ---------------------------------------------------------------~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 340 ---------------------------------------------------------------QNSHEGRISCLGLSSDG 356 (380)
T ss_dssp ---------------------------------------------------------------CSSCCCCCCEEEECSSS
T ss_pred ---------------------------------------------------------------cCCCCCceEEEEECCCC
Confidence 01267789999999999
Q ss_pred ceEEeecccceeEEEeec
Q 001176 782 LSLLALASNAVHKLWKWQ 799 (1132)
Q Consensus 782 ~~l~~~~~dg~i~vw~~~ 799 (1132)
..|++++.||.|++|++.
T Consensus 357 ~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SEEEEECTTSCEEEEECC
T ss_pred CEEEEeeCCCCEEEEecC
Confidence 999999999999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=337.37 Aligned_cols=300 Identities=16% Similarity=0.284 Sum_probs=243.9
Q ss_pred ceEEeec-CCCCeeEEEE-----cc-CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 335 TVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~-----sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.+..+|. |.+.|++++| ++ +++ +|++|+.|++|+|||+.+++..... ......+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCc
Confidence 4566777 9999999999 77 887 7999999999999999865432110 0111236789999
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+... ..
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~-~~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGE-CK 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSC-EE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCC-ce
Confidence 9999999999999999999999999999987655 6789999999999999999 8999999999999998744 33
Q ss_pred EEec---CCCCCeEEEEeeccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 488 YTFE---GHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 488 ~~~~---~h~~~v~~i~~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
..+. +|...|.+++|+|... +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 3433 7899999999988642 268999999999999994 445566788899999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE--EEeCC-------
Q 001176 557 GTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------- 626 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------- 626 (1132)
+. |+.|++||+.. ......+.. .. .|.+++|+|++.+++ ++.|+.|++||+.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred cC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 85 88899999954 444444432 22 699999999988765 4568889999998776543 33311
Q ss_pred --CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 627 --GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 627 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33457899999999999999999999999998765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.80 Aligned_cols=305 Identities=15% Similarity=0.157 Sum_probs=241.5
Q ss_pred ccc-ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 768 AAS-KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~-~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
|.. .|..++|+|+|++|++++.|+.|++|++..... ........+ | ...|.+++|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~--------------------~~~~~~~~~--h-~~~v~~~~~s 70 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW--------------------ICKSVLSEG--H-QRTVRKVAWS 70 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE--------------------EEEEEECSS--C-SSCEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc--------------------eeeeeeccc--c-CCcEEEEEEC
Confidence 655 899999999999999999999999998753211 000011223 7 8899999999
Q ss_pred eCCCEEEEee-CCeEEEEECCCC--eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---eeeeeeccc
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTF--KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGH 920 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h 920 (1132)
|+|++|++++ |++|++||+.++ +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +.+..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998876 46788999999999999999 8999999999999999999875 356678899
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 999 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 999 (1132)
...|.+++|+|++++|++++.|++|++||..+++.. +.....+|. ..|.+++|+|+|++|++ +.|+.|++|+.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 999999999999999999999999999999875422 234455665 67999999999999999 57999999996
Q ss_pred -CCCc---------------eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc
Q 001176 1000 -KLEC---------------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1063 (1132)
Q Consensus 1000 -~~~~---------------~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1063 (1132)
.... +..+. ..|...|.+++|+|++..|++++.|+.|++|+...+....... ..+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~~ 299 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT--FSLTAHLH 299 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC--EEEEEEET
T ss_pred ccCCCCccceeeccCCccceeEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee--EEEEeeec
Confidence 2111 11111 2368899999999999999999999999999998654321110 00111223
Q ss_pred CCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1064 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1064 ~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
.+|...|.+++|+|+++.+|++|+.||+|++|++.+.++....
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 5889999999999955579999999999999999998854443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=379.93 Aligned_cols=553 Identities=12% Similarity=0.082 Sum_probs=396.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...+.+++|||+ . ++..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4467899999964 4 444443 799999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEecCCCceeeeeeeecccCCE-------EEEEEecCCCcEEEEEEcCC------CcEEEEECC
Q 001176 422 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 482 (1132)
Q Consensus 422 s~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~v~~s~d~~~~~l~s~~~d------g~v~vwd~~ 482 (1132)
+++.+ ..|++|++.+++ .. .+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 379999998865 22 467788888 9999999998 77887754 468888888
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 550 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 550 (1132)
+++.. .+..+. ...++|+| | ++++++. +...++|.....+....+..|...+.+++|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77754 343332 34667876 4 7777753 345677765444555666888899999999988
Q ss_pred CEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC--
Q 001176 551 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 627 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 627 (1132)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 245567776543 34445555544 35667999999988887 58999999995443 33444321
Q ss_pred -------CCCCcceEEEc-CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccc
Q 001176 628 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 699 (1132)
Q Consensus 628 -------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 699 (1132)
+...+.+++|+ |||+.|++++ ++.|.+|+..++. ... +..
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~~----------------------------- 334 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VPE----------------------------- 334 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CSC-----------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-ccC-----------------------------
Confidence 11258999999 9999999887 7899999887652 111 110
Q ss_pred cccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCccccc-ceEEEEEe
Q 001176 700 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVRLIYT 778 (1132)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s 778 (1132)
+.. .+..++|+
T Consensus 335 --------------------------------------------------------------------~~~~~~~~~~~s 346 (1045)
T 1k32_A 335 --------------------------------------------------------------------PLRIRYVRRGGD 346 (1045)
T ss_dssp --------------------------------------------------------------------CSCEEEEEECSS
T ss_pred --------------------------------------------------------------------CCcceEEeeeEc
Confidence 223 56788899
Q ss_pred cCCceEEeecccceeE-EEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-
Q 001176 779 NSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 856 (1132)
Q Consensus 779 ~~g~~l~~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s- 856 (1132)
||+.++.++.++.+. +|++. ++.... +.+ | ...+..++|||||++|++++
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEET
T ss_pred -CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEECC
Confidence 999898888777666 66543 232222 222 4 67899999999999999998
Q ss_pred CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC----------cEEEEEcccceeeeeeccccCCeeE
Q 001176 857 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 857 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
++.|++||+.+++....+.+|...+.+++|+| +|++|++++.++ .|++||+.+++ ...+..|...+.+
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 78999999999998888888999999999999 899998887654 89999999887 6778888888999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEE--EE-E-eCCeEEEEeCCCC
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL--LV-V-HESQISVYDSKLE 1002 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l--~~-~-~d~~v~vwd~~~~ 1002 (1132)
++|+|||++|++++.++...+|+...... ....+ ..+..+.+++++... +. . .+.....|++.+.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 545 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNF------SFEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCE------ECCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG
T ss_pred ceEcCCCCEEEEEecccCCcCcchhcccc------ccccC-----ceeEEEEeCCCCCCccccCcCccccccccccccCH
Confidence 99999999999999999899998764321 00000 223444555554432 22 1 1111224555432
Q ss_pred --ceeecCCCCCCCCCeEEEEEccCCCEEEE-------------EecCCcEEEEeCCCcceecccCCCccccccccCCCC
Q 001176 1003 --CSRSWSPKDALPAPISSAIYSCDGLLVYA-------------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1067 (1132)
Q Consensus 1003 --~~~~~~~~~~h~~~i~~i~~s~dg~~las-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1132)
.+..+ ..|...+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 546 ~~~~~~l---~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------------- 607 (1045)
T 1k32_A 546 YKRSSPI---NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--------------- 607 (1045)
T ss_dssp GGGCEEC---SCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---------------
T ss_pred hHceEEc---CCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---------------
Confidence 22222 234678999999999988875 123557889999988753211
Q ss_pred CCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1068 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1068 ~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+..++|+| |++.|++++.| .|++||+.+++
T Consensus 608 ~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 3466889999 88999988866 89999998876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=334.07 Aligned_cols=304 Identities=21% Similarity=0.293 Sum_probs=260.7
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
...+..+|. |.+.|++|+|+|++..+|+||+.|++|+|||+.+++.... .....+.+|...|.++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~ 92 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDV 92 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEE
Confidence 345567788 9999999999998544899999999999999987654321 1112367899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEe
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTF 490 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~ 490 (1132)
+|+|||++|++|+.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... ..+
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECS
T ss_pred EECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEe
Confidence 999999999999999999999998876444 4556788999999999999 7999999999999998776543 456
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...+..++|++.....++++++.|+.|++||+++......+..|...|++++|+|++++|++++. |+.|++||
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd 243 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWD 243 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEE
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEE
Confidence 78999999999998887789999999999999999999998999999999999999999999999985 78899999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-------CCCCCcceEEEcCCCCE
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-------GGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~ 643 (1132)
+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+..+ .+...|.+++|+|+|++
T Consensus 244 ~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 244 LNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred eccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999998888764 699999999875 566778999999999998887776532 34557999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcc
Q 001176 644 LAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~ 662 (1132)
|++|+.||.|++||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999883
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=326.12 Aligned_cols=256 Identities=20% Similarity=0.324 Sum_probs=228.9
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|...|.+++|+|+|++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887554 5788999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++.+..+.+|...|.+++|+|.+ .+|++++.|+.|++||+++.+....+..|...|.+++|+|+++++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 169 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-- 169 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 99999999999999999999998854 89999999999999999999988899999999999999999999999985
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc-C
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-K 639 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~ 639 (1132)
++.|++||+++++.+..+.......+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........++ +
T Consensus 170 --d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 170 --DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp --TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred --CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 7789999999999888876665558999999999999999999999999999999999998877553333334444 5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
++.+|++|+.||.|++||+.++ +....+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~ 275 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK-EIVQKL 275 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC-CEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCc-hhhhhh
Confidence 8899999999999999999877 444443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=329.29 Aligned_cols=319 Identities=13% Similarity=0.173 Sum_probs=270.5
Q ss_pred cCCcceeeecCCCCCCceeccCC--------cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccc
Q 001176 309 TGQSDEVSFAGVAHTPNVYSQDD--------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 380 (1132)
Q Consensus 309 ~~~v~~~~~~~~g~~~~~~~~d~--------~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~ 380 (1132)
..++.+++++|||+.++....+. .....+..+.|...|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 34788999999999987654322 2345566677999999999999998 688888 9999999998876433
Q ss_pred ccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec
Q 001176 381 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460 (1132)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~ 460 (1132)
. + ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~--~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 P--V------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp C--S------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred e--e------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 1 0 00012368999999999999999999999999999999987632 2335778999999999999
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCe
Q 001176 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 540 (1132)
Q Consensus 461 d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 540 (1132)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.||.|++||+++.+....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998854 899999999999999999887766654 5678
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999875 778999999987754 5566665 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..... ...+.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 66543 337999999999999999999999999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=334.57 Aligned_cols=286 Identities=13% Similarity=0.165 Sum_probs=244.1
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.++|.+++|||||+ +++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999999 57777666666666444332211 1346999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeee--cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--EEEEecCCCCCe
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 497 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v 497 (1132)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876544433444 7999999999999999 89999999999999999887 667788999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
.+++|+|++ .++++++.||.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998854 89999999999999999998888888889999999999999999999975 788999999999988
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87753 33 7999999999999999999999999999988764 34444 44899999999999999999999999999
Q ss_pred cCCc
Q 001176 658 NSDG 661 (1132)
Q Consensus 658 ~~~~ 661 (1132)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9877
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=343.23 Aligned_cols=345 Identities=11% Similarity=0.113 Sum_probs=282.7
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
..+++++|+|+|++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.||.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345679999999999999999999999998865543 34445 4455567899999 89999999999999999999
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCe
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1132)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 999989999999999998854 89999999999999999999999999999999999999999999999985 778
Q ss_pred EEEEeCCCCceeeeecccc--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE
Q 001176 566 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1132)
|++||+++++.+..+..+. ...+.+++|.+.+... ....+ ...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~--~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEIS--TSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGGC--CCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeecc--cCcccceEEcCCCCE
Confidence 9999999999999887642 2367888887654322 01111 236889999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccC
Q 001176 644 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 723 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1132)
|++++.||.|++||+.++......
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQL-------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEE--------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEc--------------------------------------------------------
Confidence 999999999999998765111000
Q ss_pred cCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccC
Q 001176 724 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 803 (1132)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 803 (1132)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC-EEEEee-CCeEEEEECCCCeE-EEEeeC-CCC
Q 001176 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PPP 879 (1132)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~-~~~~~~-~~~ 879 (1132)
.. .| ...|.+++|+|++. +|++++ ||.|++||+.+++. +..+.+ |..
T Consensus 286 --------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 286 --------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp --------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred --------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 00 04 66788999999998 888888 89999999988754 667766 667
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---------eeeeeeccccCCeeEEEEcCCCC---EEEEEcCCCcEEE
Q 001176 880 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCM 947 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~~~D~~i~i 947 (1132)
.|+++.+ + ++++|++++.||.|++|++.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+
T Consensus 337 ~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 337 PINNVYF-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp CEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CceEEEe-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 7888865 4 5689999999999999998863 22234567889999999999999 7888888999999
Q ss_pred EECCC
Q 001176 948 WSIDK 952 (1132)
Q Consensus 948 wd~~~ 952 (1132)
|++..
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=324.70 Aligned_cols=205 Identities=18% Similarity=0.294 Sum_probs=177.7
Q ss_pred eeeeecccCCEEEEEE-----ec-CCCcEEEEEEcCCCcEEEEECCC-------CeEEEEecCCCCCeEEEEeeccCCcc
Q 001176 443 HLEIDAHVGGVNDIAF-----AH-PNKQLCIVTCGDDKMIKVWDVVA-------GRKQYTFEGHEAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~-----s~-d~~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~~ 509 (1132)
...+.+|.+.|++++| ++ +++ +|+||+.|++|++||+.+ +.+...+.+|...|.+++|+|++ .
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--C 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--T
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--C
Confidence 3468899999999999 76 888 899999999999999874 34667889999999999998754 8
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec---cccCC
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFRKR 586 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~~~ 586 (1132)
++++++.|++|++||+++++....+..|...|.+++|+|++++|++++. ++.|++||+... ...... +|..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~~- 163 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA----EREIKLWNILGE-CKFSSAEKENHSD- 163 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET----TSCEEEEESSSC-EEEECCTTTSCSS-
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC----CCEEEEEeccCC-ceeeeecccCCCc-
Confidence 9999999999999999999988899999999999999999999999985 788999999843 333332 4544
Q ss_pred ceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 587 SLGVVQFDTTR----------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 587 ~v~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.+.+++|+|++ .++++++.|+.|++||. ..+....+..|.. .|.+++|+|+|++|++|+.||.|++|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS--CEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc--cceEEEECCCCCEEEEEcCCCeEEEE
Confidence 79999999987 78999999999999994 5666777776644 89999999999999999999999999
Q ss_pred EcCC
Q 001176 657 ANSD 660 (1132)
Q Consensus 657 ~~~~ 660 (1132)
|+.+
T Consensus 241 d~~~ 244 (343)
T 2xzm_R 241 DILN 244 (343)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9743
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=351.93 Aligned_cols=357 Identities=9% Similarity=0.096 Sum_probs=268.5
Q ss_pred CCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecC---CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 402 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 402 ~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
.+|.+.|++++|+| ++++||+|+.||+|++||+.+ +........+ +|...|.+++|+|+++ +|++|+.||.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 67999999999999 999999999999999999987 5433322233 5999999999999999 899999999999
Q ss_pred EEECC---CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE--EcCCCCE
Q 001176 478 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 552 (1132)
Q Consensus 478 vwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 552 (1132)
+||+. +++.+..+.+| .+..+.+++.+ +...+.++. +++++++
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777776666 67777776532 122344444 6789999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeecc--ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++|+.||.|++||+++++.+..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999975 78899999999999999988 555 89999999999999999999999999999999998886322 23
Q ss_pred CcceEEEc----CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCC
Q 001176 631 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 706 (1132)
Q Consensus 631 ~v~~~~~s----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 706 (1132)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.++...+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~------------------------------- 306 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQP------------------------------- 306 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCC-------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCC-------------------------------
Confidence 78999555 56889999999999999999988 5666665543221
Q ss_pred CCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEe
Q 001176 707 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 786 (1132)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 786 (1132)
..+.|+|+++.+
T Consensus 307 ------------------------------------------------------------------~~~~~~~~~~~l-- 318 (437)
T 3gre_A 307 ------------------------------------------------------------------SMEHFLPIEKGL-- 318 (437)
T ss_dssp ------------------------------------------------------------------CGGGGSCBCSSG--
T ss_pred ------------------------------------------------------------------ccceeccccccc--
Confidence 112233333222
Q ss_pred ecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEEC
Q 001176 787 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 865 (1132)
Q Consensus 787 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~ 865 (1132)
.+. .+.+..| ...|++++|+ ++++|++++ |+.|++||+
T Consensus 319 --~~~-------------------------------------~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 319 --EEL-------------------------------------NFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp --GGC-------------------------------------CCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred --ccc-------------------------------------eeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 000 0111125 7889999999 889999998 999999999
Q ss_pred CCCeEEEEeeCCCC---CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCC--CCEEEEEc
Q 001176 866 MTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSSG 940 (1132)
Q Consensus 866 ~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd--g~~l~s~~ 940 (1132)
.+++....+.+|.. .+....+++ ...+++.. |+...+........|.+.|++++|+++ +.+|+|++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99999999988653 355667776 55554443 333444455666789999999999998 78999999
Q ss_pred CCCcEEEEE
Q 001176 941 ADAQLCMWS 949 (1132)
Q Consensus 941 ~D~~i~iwd 949 (1132)
.||.|++|+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=353.94 Aligned_cols=273 Identities=10% Similarity=0.060 Sum_probs=214.2
Q ss_pred ccceEEeecCCCCeeEEEEccCC---------CeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 333 TKTVVRTLNQGSNVMSMDFHPQQ---------QTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 333 ~~~~~~~l~h~~~V~~~~~spdg---------~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
+.....++.+.+.|++|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 55666777788999999999987 4 78888754310
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCcee-eeeeeecccCCEEEEEEecC------CCcEEEEEEcCCCcE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMI 476 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d------~~~~~l~s~~~dg~v 476 (1132)
-..+|+++.+|+++.|++|+||++.+++... ....+.+|.+.|.+++|+|+ +. +|++++.||+|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999998876432 12246678899999999997 45 89999999999
Q ss_pred EEEECCCCeE-----------EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEE
Q 001176 477 KVWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM 544 (1132)
Q Consensus 477 ~vwd~~~~~~-----------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~ 544 (1132)
++||+.+++. ...+.+|...|++++|++. ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 3478899999999999863 4899999999999999997644 45678899999999
Q ss_pred --EEcCCC-CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 545 --AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 545 --~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+|++++ ++|++++. |++|++||+++++.+..+.+|.. ..+.+++|+|+++.+++++.|+.|++||++++.++
T Consensus 315 ~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 578888 88999985 88999999999888777777654 24788999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
..+..|.. .|++++|+|+|++|++|+.||+|++||..
T Consensus 391 ~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 391 HPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred eeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 88877644 89999999999999999999999999964
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=345.51 Aligned_cols=284 Identities=15% Similarity=0.170 Sum_probs=239.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 3466899999999 588999999999999988765432 3344 445566789999999999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
+.||.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876443 5678999999999999999 89999999999999999999999999999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCeEEE---------------------EEEcCCCCEEEEEecC
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTM---------------------MAYSADGTRLFSCGTS 559 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~---------------------~~~s~~~~~l~~~~~~ 559 (1132)
|++ .+|++++.|+.|++||+++++....+.. +...+.+ ++|+|++++|++++.
T Consensus 191 ~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 DRG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp TTT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred CCC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 854 8999999999999999998888777764 3334444 445789999999875
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCee-EEEEeCCCCCCCcceEEE
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRF 637 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~ 637 (1132)
++.|++||+++++.+..+...+...+.+++|+|++. ++++++.||.|++||+.+++. +..+..+.. ..|.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEEEe
Confidence 778999999999988887665555899999999998 999999999999999998754 666665322 36777755
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 638 NKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 638 s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++++|++++.||.|++|++.+.
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=351.76 Aligned_cols=327 Identities=14% Similarity=0.179 Sum_probs=270.3
Q ss_pred ccCCcceeeecCCCC-CCcee----------ccCC-------ccc---ceEEeecCCCCeeEEEEccCCCeEEEEEcCCC
Q 001176 308 RTGQSDEVSFAGVAH-TPNVY----------SQDD-------LTK---TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG 366 (1132)
Q Consensus 308 ~~~~v~~~~~~~~g~-~~~~~----------~~d~-------~~~---~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg 366 (1132)
....+.+++|+|+|+ .+++. ..|. ... +++..+.|...|++++|+|+++ +|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCC
Confidence 344678889999987 55555 2222 222 2556667899999999999998 689999999
Q ss_pred cEEEEecCCC----ccccccceeeeecccccccccccccCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCC---
Q 001176 367 DISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTG--- 438 (1132)
Q Consensus 367 ~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~--- 438 (1132)
.|+|||+.+. +.+. .+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++
T Consensus 90 ~v~vw~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMA-------------------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp CEEEECCSSTTSCCCEEE-------------------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred eEEEeecccccccccchh-------------------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 9999999872 2222 26689999999999998 8999999999999999999876
Q ss_pred ---ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC------CCCeEEEEeeccCCcc
Q 001176 439 ---ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH------EAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 439 ---~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------~~~v~~i~~~~~~~~~ 509 (1132)
.......+.+|...|.+++|+|++.. ++++++.|+.|++||+.+++.+..+..| ...|.+++|+|++. .
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 228 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAH-VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-T 228 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTT-EEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT-T
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCc-EEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC-C
Confidence 33322345679999999999999433 8999999999999999999999998876 78999999988642 6
Q ss_pred EEEEEecCC---eEEEEEcCCC-CceEEec-CCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 510 FIFSTAIDG---KIKAWLYDYL-GSRVDYD-APGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 510 ~l~s~s~dg---~i~~wd~~~~-~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
++++++.|+ .|++||+++. .....+. .|...|.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCC
Confidence 899999999 9999999986 4555666 7889999999999 8999999975 788999999999999999988
Q ss_pred cCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeC--------------------C-------------CCC
Q 001176 584 RKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDA--------------------D-------------GGL 629 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~-------------~~~ 629 (1132)
.. .|.+++|+|++ .++++++.|+.|++||+.+......... + ...
T Consensus 305 ~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 305 GN-WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SS-CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CC-ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 87 89999999999 8999999999999999987653221100 0 023
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 630 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+.+++|+|+|++|++++.|+.|++|++.++
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 46779999999999999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=319.85 Aligned_cols=305 Identities=15% Similarity=0.204 Sum_probs=230.8
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+.+++..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ ..+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4556778888887 8999999987 8999999999999999875 445555322245589999999999999999999
Q ss_pred CcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccc
Q 001176 651 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 730 (1132)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1132)
++|++|++....... .
T Consensus 80 ~~v~iw~~~~~~~~~--~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADRT--F-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc--c--------------------------------------------------------------
Confidence 999999975330000 0
Q ss_pred cccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccc
Q 001176 731 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 810 (1132)
Q Consensus 731 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 810 (1132)
... + +..
T Consensus 96 -------------------------------------------------~~~-~--------~~~--------------- 102 (330)
T 2hes_X 96 -------------------------------------------------EMD-L--------LAI--------------- 102 (330)
T ss_dssp -------------------------------------------------CCE-E--------EEE---------------
T ss_pred -------------------------------------------------cce-e--------EEE---------------
Confidence 000 0 000
Q ss_pred cccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCC----CeEEEEeeCCCCCeEEEE
Q 001176 811 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFLA 885 (1132)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~ 885 (1132)
+.+ | ...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|++++
T Consensus 103 -------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 103 -------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp -------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred -------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 112 6 77899999999999999998 89999999842 356788999999999999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEEcccc--eeeeeeccccCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccc---
Q 001176 886 FHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKS--- 958 (1132)
Q Consensus 886 ~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~--- 958 (1132)
|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.....
T Consensus 161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 161 WHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 999 8999999999999999999876 678889999999999999999 77999999999999999976432110
Q ss_pred eeeeCCCC-CCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC-CC--ceeecCCCCCCCC-CeEEEEEcc--CCCEEEE
Q 001176 959 RFIQAPAG-RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LE--CSRSWSPKDALPA-PISSAIYSC--DGLLVYA 1031 (1132)
Q Consensus 959 ~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~-~~--~~~~~~~~~~h~~-~i~~i~~s~--dg~~las 1031 (1132)
.+.....+ |. ..|.+++|++++.++..+.|+.|++||.. +. ..... ..+|.. .|.+++|+| ++++||+
T Consensus 240 ~~~~~~~~~h~---~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 240 VCEAILPDVHK---RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEEEECCSCCS---SCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEE
T ss_pred EEeeecccccc---cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEE
Confidence 12222332 43 67999999987744444789999999993 32 22222 234566 899999999 7899999
Q ss_pred EecCCcEEEEeCCC
Q 001176 1032 GFCDGAIGVFDAET 1045 (1132)
Q Consensus 1032 ~~~dg~i~vwd~~~ 1045 (1132)
|+.||+|++||+++
T Consensus 315 ~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 315 GGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSEEEEEEC--
T ss_pred ecCCCcEEEEEecc
Confidence 99999999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=357.64 Aligned_cols=298 Identities=20% Similarity=0.284 Sum_probs=252.9
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
....+. |.+.|++++|+|++..+|++|+.|++|+||++.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344566 9999999999998766899999999999999987543211 0111267899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe---c
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 491 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~ 491 (1132)
|+|++|++|+.||+|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999886554 6789999999999999999 7999999999999998665443332 4
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
+|...|.+++|+|+.....+++++.|++|++||+++......+..|.+.|++++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999998766679999999999999999999888899999999999999999999999985 788999999
Q ss_pred CCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-----------------CCCcce
Q 001176 572 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 634 (1132)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 634 (1132)
.+++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999888876543 699999999987776654 66799999999998887753311 113678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 635 LRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
++|+|+|++|++|+.||.|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=351.87 Aligned_cols=344 Identities=10% Similarity=0.048 Sum_probs=234.9
Q ss_pred CCcCeEEEEEcCCC---------CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 404 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 404 h~~~V~~v~~spdg---------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999866420 01368888 899999999
Q ss_pred cEEEEECCCCeEE----EEecCCCCCeEEEEeecc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001176 475 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 535 (1132)
Q Consensus 475 ~v~vwd~~~~~~~----~~~~~h~~~v~~i~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~ 535 (1132)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 456678899999999986 3467999999999999999976542 23567
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEE--EEeCCC-CEEEEEEcCCeEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 611 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 611 (1132)
+|...|++++|++++ .|++++. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888875 8899999999774 4456788877 89998 578887 89999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccc
Q 001176 612 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 691 (1132)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1132)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++ .....+.+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~g--------------------- 395 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVS--------------------- 395 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEE---------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeec---------------------
Confidence 99998887666655433235789999999999999999999999998765 11111111
Q ss_pred ccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccc
Q 001176 692 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 771 (1132)
Q Consensus 692 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1132)
T Consensus 396 -------------------------------------------------------------------------------- 395 (524)
T 2j04_B 396 -------------------------------------------------------------------------------- 395 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 851 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~ 851 (1132)
| ...|++++|+|+|++
T Consensus 396 ---------------------------------------------------------------H-~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 396 ---------------------------------------------------------------R-ETTITAIGVSRLHPM 411 (524)
T ss_dssp ---------------------------------------------------------------C-SSCEEEEECCSSCCB
T ss_pred ---------------------------------------------------------------C-CCceEEEEeCCCCCe
Confidence 3 445555555555555
Q ss_pred EEEee-CCeEEEEECCCCeEEEEeeC-----CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc-cceeeeeeccccCCe
Q 001176 852 VMSAS-GGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNRI 924 (1132)
Q Consensus 852 la~~s-dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V 924 (1132)
|++|+ |++|++||+... .+..+.. +...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|...|
T Consensus 412 l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V 486 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINI 486 (524)
T ss_dssp CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSC
T ss_pred EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceE
Confidence 55555 555555555432 1111110 122467889999 776552 222 34444443 567788899999999
Q ss_pred eEEEEcCCCC---EEEEEcCCCcEEEEECCC
Q 001176 925 TGLAFSPTLN---ALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 925 ~~l~~spdg~---~l~s~~~D~~i~iwd~~~ 952 (1132)
.+++|+|++. ++|+|+.||.|+||++..
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 9999999964 999999999999999875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=330.11 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=246.8
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
+......+. |...|++++|+|++..+|++|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 345566776 99999999999999337999999999999999987654320 134699999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 44443333345568899999999999 8999999999999998 68888999
Q ss_pred cCCCCCeEEEEeeccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCC
Q 001176 491 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 564 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~-~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 564 (1132)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .|...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999998865 5 999999999999999997 3334444 6888999999999 9999999975 78
Q ss_pred eEEEEeCCCCceeeeeccccC----------------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC
Q 001176 565 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
.|++||+++++....+.+|.. ..+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 899999999887777665431 13344666666665 667899999999999999999987655
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 629 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
...+..++|+|++++|++++ ||.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677889999999999997 89999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=325.42 Aligned_cols=251 Identities=18% Similarity=0.305 Sum_probs=212.1
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc------------------CCEEEEEEecCCCc
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV------------------GGVNDIAFAHPNKQ 464 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~------------------~~v~~v~~s~d~~~ 464 (1132)
+|.+.|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 4999999999999999999986 6789999999987654 233332 2499999999999
Q ss_pred EEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC--CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 89999999999999999999999999999999999998855 899999999999999999887766665 45679999
Q ss_pred EEcC-CCCEEEEEecCCCCCCeEEEEeCCCCceeeee-------ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 545 AYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 545 ~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
+|+| +++++++++. ++.|++||+++++.+..+ .+|.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999985 788999999999888776 45555 899999999999999999999999999976
Q ss_pred Ce------------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 617 MN------------MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 617 ~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
.. +...+..|. ..|.+++|+|++.+|++|+.|+.|++||..++ +....+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~ 350 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 350 (393)
T ss_dssp -------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred CCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECC
Confidence 32 344555554 47999999999999999999999999999887 44444443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=327.29 Aligned_cols=319 Identities=18% Similarity=0.302 Sum_probs=274.3
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887643 355579999999999999999999987665 678999999999998 45 799999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++.+..+.+|...|.++++++ ..+++++.||.|++||+.+++....+..|...|.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999853 68999999999999999999999899999999999999 7889999875
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
++.|++||+++++.+..+.+|.. .+.++.| ++.++++++.|+.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 78899999999999999998877 8999998 788999999999999999999999998887644 5666665 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccC
Q 001176 641 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 720 (1132)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1132)
++++++++.||.|++||+.++ +....+..+
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------------------------------------------- 358 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------------------------------------------- 358 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-CEEEEECST-------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEEccC-------------------------------------------------
Confidence 779999999999999998766 222211110
Q ss_pred ccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeecc
Q 001176 721 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 800 (1132)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~ 800 (1132)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEe-----
Q 001176 801 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF----- 874 (1132)
Q Consensus 801 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~----- 874 (1132)
..| ...|.+++|+ ++++++++ ||.|++||+.+++.+..+
T Consensus 359 --------------------------------~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 359 --------------------------------NKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp --------------------------------TSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred --------------------------------CCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence 004 6678888884 68899998 899999999999998888
Q ss_pred eCCCCCeEEEEEeCCCCCeEEEEeCCCc----EEEEEccc
Q 001176 875 MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 910 (1132)
Q Consensus 875 ~~~~~~i~~l~~sp~~~~~lasg~~dg~----v~iwd~~~ 910 (1132)
.+|.+.|.+++|+| ++.++|+|+.||+ |.|||+..
T Consensus 404 ~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46788999999999 8999999999998 99999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=328.02 Aligned_cols=317 Identities=20% Similarity=0.331 Sum_probs=274.4
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd 524 (1132)
.+.+|.+.|.. +++++++ +|++|+.||.|++||+.+++.+..+.+|...|.++++++ .++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEEE
Confidence 57789887533 3555677 899999999999999999999999999999999999962 6999999999999999
Q ss_pred cCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE
Q 001176 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1132)
+.+++....+..|...|.+++++ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.+++| +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99998888999999999999995 567888875 78899999999999999998877 8999988 688999999
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 684 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1132)
.||.|++||+.+++.+..+..|.. .|.+++| ++.++++++.||.|++||+.++ +....+.+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~-------------- 317 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTG-------------- 317 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECC--------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcC--------------
Confidence 999999999999999999886644 7889988 7899999999999999998766 21111110
Q ss_pred CCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecC
Q 001176 685 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 764 (1132)
Q Consensus 685 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 764 (1132)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 765 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 765 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
| ...+.++.
T Consensus 318 ----------------------------------------------------------------------~-~~~v~~~~ 326 (445)
T 2ovr_B 318 ----------------------------------------------------------------------H-QSLTSGME 326 (445)
T ss_dssp ----------------------------------------------------------------------C-CSCEEEEE
T ss_pred ----------------------------------------------------------------------C-cccEEEEE
Confidence 2 44455555
Q ss_pred EeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee---
Q 001176 845 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--- 917 (1132)
Q Consensus 845 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--- 917 (1132)
+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+
T Consensus 327 ~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 401 (445)
T 2ovr_B 327 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTL 401 (445)
T ss_dssp E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred E--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeecc
Confidence 4 567888888 89999999999999999886 888999999964 69999999999999999999988887
Q ss_pred --ccccCCeeEEEEcCCCCEEEEEcCCCc----EEEEECCC
Q 001176 918 --KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 952 (1132)
Q Consensus 918 --~~h~~~V~~l~~spdg~~l~s~~~D~~----i~iwd~~~ 952 (1132)
.+|.+.|++++|+|++.++++++.||+ |.+||++.
T Consensus 402 ~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 578899999999999999999999998 99999975
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=313.79 Aligned_cols=312 Identities=18% Similarity=0.290 Sum_probs=243.8
Q ss_pred EEeCCCe--EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----EEEEecCCC
Q 001176 422 VAFSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE 494 (1132)
Q Consensus 422 s~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~h~ 494 (1132)
+|...|+ +.++...+ +.+....+|+||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|.
T Consensus 9 ~g~d~g~~~~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~ 86 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMT-EQMTLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred cccCCCCccEEEEEccC-CceEEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence 3333444 33344333 333344578999999999999998533 89999999999999987643 567889999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
..|.+++|+|+ +.+|++++.|+.|++|+............+...+..+.++++++++++++. ++.+++||....
T Consensus 87 ~~V~~~~~s~d--g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~ 160 (340)
T 4aow_A 87 HFVSDVVISSD--GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGV 160 (340)
T ss_dssp SCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSC
T ss_pred CCEEEEEECCC--CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCC
Confidence 99999999875 489999999999999999998888888888889999999999999999975 778999998866
Q ss_pred ceee-eeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 575 AIKR-TYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 575 ~~~~-~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
.... ...+|.. .+..++|++++ ..+++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.||
T Consensus 161 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 161 CKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp EEEEECSSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTC
T ss_pred ceEEEEeccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEEeCCC
Confidence 5443 3445555 89999998875 5678899999999999999999999887754 899999999999999999999
Q ss_pred cEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccc
Q 001176 652 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLV 731 (1132)
Q Consensus 652 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1132)
.|++||+.+. +....+.
T Consensus 238 ~i~iwd~~~~-~~~~~~~-------------------------------------------------------------- 254 (340)
T 4aow_A 238 QAMLWDLNEG-KHLYTLD-------------------------------------------------------------- 254 (340)
T ss_dssp EEEEEETTTT-EEEEEEE--------------------------------------------------------------
T ss_pred eEEEEEeccC-ceeeeec--------------------------------------------------------------
Confidence 9999998765 1111100
Q ss_pred ccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccc
Q 001176 732 DVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 811 (1132)
Q Consensus 732 ~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 811 (1132)
T Consensus 255 -------------------------------------------------------------------------------- 254 (340)
T 4aow_A 255 -------------------------------------------------------------------------------- 254 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEe---------eCCCCCeE
Q 001176 812 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF---------MSPPPAAT 882 (1132)
Q Consensus 812 ~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~---------~~~~~~i~ 882 (1132)
+ ...+.+++|+|++.+++++.|+.|++||+.++..+..+ .+|...|+
T Consensus 255 -----------------------~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (340)
T 4aow_A 255 -----------------------G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310 (340)
T ss_dssp -----------------------C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred -----------------------C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence 1 33566777777777666666788888887776665554 36888999
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcccce
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 912 (1132)
+++|+| ++++||+|+.||.|+|||+.+|+
T Consensus 311 ~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 311 SLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999 89999999999999999999885
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=360.27 Aligned_cols=530 Identities=12% Similarity=0.011 Sum_probs=373.4
Q ss_pred ccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcC------CCcEEEEecCCCccccccceeeeeccccccccccccc
Q 001176 328 SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 401 (1132)
Q Consensus 328 ~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1132)
.++...++......|...|.+++|||||++ ||.++. +..|++|++.+++... +
T Consensus 37 ~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~~--------------------l 95 (1045)
T 1k32_A 37 EHDLKSGSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIKR--------------------I 95 (1045)
T ss_dssp EEETTTCCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEEE--------------------C
T ss_pred EEECCCCcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeEE--------------------c
Confidence 344444554444459999999999999995 554432 3489999998876322 5
Q ss_pred CCCCcCe-------EEEEEcCCCCeEEEEeCC------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEE
Q 001176 402 NDAAISV-------NRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468 (1132)
Q Consensus 402 ~~h~~~V-------~~v~~spdg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~ 468 (1132)
..|...+ .+++|||||+++++++.+ ..|.+|++.++... .+..+ ....++|+| | +++
T Consensus 96 t~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~l~ 165 (1045)
T 1k32_A 96 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---RRV 165 (1045)
T ss_dssp CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---EEE
T ss_pred ccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---EEE
Confidence 6688777 999999999977777754 35888888776432 23333 345678999 6 466
Q ss_pred EEcC------------CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEec
Q 001176 469 TCGD------------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYD 535 (1132)
Q Consensus 469 s~~~------------dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~ 535 (1132)
+++. +....+|....+.....+.+|...+.++.|+++ .++++++.|+.+++|.++.. .....+.
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 166 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred EeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceEec
Confidence 6642 335667754433445666899999999999764 57778888999999987653 3344444
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc----------CCceEEEEEe-CCCCEEEEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFD-TTRNRFLAAG 604 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~~~ 604 (1132)
.+. .+...+|+|||++|+.+. ++.|++||+.... +..+.++. ...+..++|+ |+|+++++++
T Consensus 243 ~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 243 SFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp CCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred CCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 443 456779999999998874 6679999995443 33554421 1157889999 9999999887
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCCCC-CcceEEEcCCCCEEEEEeCCCcEE-EEEcCCcceeeeeccccccccccCCCCC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK-ILANSDGVRLLRMLEGRAMDKNRCPSEP 682 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1132)
++.|++|+..+++... +..+ .. .+..++|+ ||+.|++++.++.+. +|++.++ ... .+.
T Consensus 316 -~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-~~~-~l~------------- 375 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLK-VPEP--LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-KAE-KFE------------- 375 (1045)
T ss_dssp -TTEEEEECTTSSBEEE-CSCC--SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-CEE-ECC-------------
T ss_pred -cCEEEEEcCCCCceEE-ccCC--CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-Cce-Eec-------------
Confidence 8899999998877554 3322 23 67899999 999999999888888 8887655 111 110
Q ss_pred CCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEe
Q 001176 683 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 762 (1132)
Q Consensus 683 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 762 (1132)
T Consensus 376 -------------------------------------------------------------------------------- 375 (1045)
T 1k32_A 376 -------------------------------------------------------------------------------- 375 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 763 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 763 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
.+...+..++|+|||+.|++++.++.+++||+. ++..... ..+ | ...+.+
T Consensus 376 ----~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~----------------------tg~~~~~-~~~--~-~~~v~~ 425 (1045)
T 1k32_A 376 ----ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE----------------------TGKPTVI-ERS--R-EAMITD 425 (1045)
T ss_dssp ----CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT----------------------TCCEEEE-EEC--S-SSCCCC
T ss_pred ----CCccceeeeEECCCCCEEEEECCCCeEEEEECC----------------------CCceEEe-ccC--C-CCCccc
Confidence 133567889999999999999999999999764 3332221 112 4 677899
Q ss_pred EEEeeCCCEEEEee-CC----------eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 843 IALSKNDSYVMSAS-GG----------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg----------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
++|||||++|++++ ++ .|++||+.+++ ...+..|...+.+++|+| +|++|++++.++...+|+....
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSS
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhcc
Confidence 99999999998886 44 89999999887 677778888899999999 8999999999999999987644
Q ss_pred eeeeeeccccCCeeEEEEcCCCCEE--EEEcCC-CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 912 EVKTKLKGHQNRITGLAFSPTLNAL--VSSGAD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~~l~~spdg~~l--~s~~~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
... ..+...+..+.+++++... +..+.+ .....|++..... . +.....+. ..+..++|+|||+++++
T Consensus 504 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~---~~~l~~~~---~~~~~~~~s~dg~~~~~ 573 (1045)
T 1k32_A 504 NFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK-R---SSPINVDP---GDYRMIIPLESSILIYS 573 (1045)
T ss_dssp CEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG-G---CEECSCCC---BCEEEEEECSSEEEEEE
T ss_pred ccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH-c---eEEcCCCC---CChhheEEcCCCeEEEE
Confidence 322 2234556667777666543 222222 2223455543211 1 11111222 45789999999987774
Q ss_pred ------------E--eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 989 ------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 989 ------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
+ ....+.+||+.......+. ..+.+++|||||++|++++.+ .|++||+.+++
T Consensus 574 ~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 574 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2456888888544444432 468899999999999999866 89999999887
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=328.21 Aligned_cols=320 Identities=19% Similarity=0.306 Sum_probs=272.7
Q ss_pred cCCCCcCe-EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 401 LNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 401 ~~~h~~~V-~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++ .+++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 56788875 55555 67899999999999999999987554 678999999999999887 58999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-----------------------eEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDA 536 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------------------~~~~~~ 536 (1132)
|+.+++.+..+.+|...|.+++|++.+++.++++++.||.|++||+++... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999877889999999999999999987653 334566
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 77777766 678899999975 77899999999999999999877 899999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 696 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 696 (1132)
++.+..+..|.. .|.+++|+ +.+|++++.||.|++||+.++.....
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------ 387 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS------------------------------ 387 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee------------------------------
Confidence 999999987754 78999997 57999999999999999875411000
Q ss_pred ccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEE
Q 001176 697 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 776 (1132)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 776 (1132)
T Consensus 388 -------------------------------------------------------------------------------- 387 (464)
T 3v7d_B 388 -------------------------------------------------------------------------------- 387 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee
Q 001176 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 856 (1132)
Q Consensus 777 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s 856 (1132)
+ . | ...+..++|+++++++++++
T Consensus 388 ~-----------------------------------------------------~---~-~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 388 Y-----------------------------------------------------H---H-TNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp E-----------------------------------------------------E---C-TTCCCEEEEEECSSEEEEEE
T ss_pred e-----------------------------------------------------c---C-CCCccEEEEEeCCCEEEEec
Confidence 0 0 1 44566788999999999999
Q ss_pred CCeEEEEECCCCeEEEE-eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc
Q 001176 857 GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 857 dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 908 (1132)
||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 411 dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 99999999999999886 67788999999997 4567777778887666543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=328.65 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=253.7
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEe
Confidence 345565 999999999999 4 79999999999999999876211100 001255799999999999
Q ss_pred CC----C---CeEEEEeCCCeEEEEEecCCCc-----eeeeeeeecc-----cCCEEEEEEe----cCCCcEE-EEEEcC
Q 001176 415 PD----G---LMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGD 472 (1132)
Q Consensus 415 pd----g---~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h-----~~~v~~v~~s----~d~~~~~-l~s~~~ 472 (1132)
|+ | ++|++++.||.|++||+.+++. +. .+..| ...|.+++|+ |+++ + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998875 43 56677 5899999999 9998 8 999999
Q ss_pred CCcEEEEECCC------CeEEE-----Ee-------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 473 DKMIKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 473 dg~v~vwd~~~------~~~~~-----~~-------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
||.|++||+.+ ++.+. .+ ..|...|.+++|+| ++ ++++++.||.|++||+++......+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 66665 67 44899999999987 44 9999999999999999998888888
Q ss_pred cC---C---CCeEEEEEEcCCCCEEEEEecCCCCC---CeEEEEeCCCCceeeeecc-------------ccCCceEEEE
Q 001176 535 DA---P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQ 592 (1132)
Q Consensus 535 ~~---~---~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~ 592 (1132)
.. | ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .|.+++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred eccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 88 8 889999999999999999975 5 7899999999999999988 666 899999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe------CC-------------CCCCCcceEEEcCCC----------CE
Q 001176 593 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SL 643 (1132)
Q Consensus 593 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~ 643 (1132)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 013489999999998 79
Q ss_pred EEEEeCCCcEEEEEcCCc
Q 001176 644 LAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~ 661 (1132)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999999876
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=319.44 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=255.2
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
.+. |.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCC
Confidence 344 999999999999998 699999999999999998876653 66899999999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCe-------
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------- 485 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~~~------- 485 (1132)
++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+..+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 999999999999999999987665 343 888999999999999 89999988 999999987653
Q ss_pred ----EEEEecCCCC--CeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 486 ----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 486 ----~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.+..+..|.. .+.+++|+|++ .+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 3445566666 99999998854 8999999999999999998 5667788889999999999999999999975
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCeeEEEEe
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~ 624 (1132)
++.|++||+.+++.+..+.. .. .+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 239 ----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 239 ----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp ----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred ----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 78899999999999888883 33 799999999999999999888 89999999999999998
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 313 ~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 313 GHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 7754 8999999999999999999999999999876
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=310.82 Aligned_cols=289 Identities=16% Similarity=0.258 Sum_probs=252.7
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
+.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~ 65 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSV 65 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEE
Confidence 346677887 9999999999 9998 699999999999999988765442 45689999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+|+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+.
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99999999999999999999999876544445568899999999999 456 799999999999999 788888999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||
T Consensus 140 ~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d 211 (313)
T 3odt_A 140 AHNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVD 211 (313)
T ss_dssp CCSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEE
T ss_pred cCCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEE
Confidence 99999999999873 337999999999999999 3445556665 788999999999998 777764 78899999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+++++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.|
T Consensus 212 ~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 212 MHTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp TTTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETT
T ss_pred CCchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCC
Confidence 999999999998887 89999999999 689999999999999999999999987754 799999999998 6679999
Q ss_pred CcEEEEEcCCc
Q 001176 651 NGIKILANSDG 661 (1132)
Q Consensus 651 g~i~iw~~~~~ 661 (1132)
|.|++|++.++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999887
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=322.86 Aligned_cols=283 Identities=17% Similarity=0.255 Sum_probs=246.0
Q ss_pred eEEeec-CCCCe-eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNV-MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V-~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
...++. |...| .|+.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~ 170 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKY 170 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEE
Confidence 344555 77764 66666 455 799999999999999999876653 6689999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeE-----
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRK----- 486 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~vwd~~~~~~----- 486 (1132)
+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|+.|++||+.++..
T Consensus 171 ~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 171 AHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp CSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC----
T ss_pred cCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccc
Confidence 9988 99999999999999999987554 6788999999999995 555 899999999999999987752
Q ss_pred ------------------EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC
Q 001176 487 ------------------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 548 (1132)
Q Consensus 487 ------------------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 548 (1132)
+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..|...|.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence 5567889999998853 337999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
+++++++++. ++.|++||+++++.+..+.+|.. .|.+++|+ ++++++++.||.|++||+.++.........
T Consensus 321 ~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-- 391 (464)
T 3v7d_B 321 ERKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT-- 391 (464)
T ss_dssp TTTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT--
T ss_pred CCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC--
Confidence 9999999985 78899999999999999999887 89999997 579999999999999999998877666422
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 629 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+..++|++++.++++++ ||.|++||+.++
T Consensus 392 -~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 -NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp -TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred -CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3578899999999999998 899999999988
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=322.67 Aligned_cols=293 Identities=13% Similarity=0.113 Sum_probs=247.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc--cccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 888999999999998 79999999999999998875 3321 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---E-EEecCCCC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---Q-YTFEGHEA 495 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~-~~~~~h~~ 495 (1132)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..++. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998875432 234567999999999999998 899999999999999988762 2 33467899
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
.|.+++|+|++ .+|++++.||.|++||++ .......+..|...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999998854 899999999999999954 4566667778889999999999999999997
Q ss_pred cCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeeE---------------
Q 001176 558 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 620 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (1132)
. ++.|++||+++++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 78899999999999999998876 89999999999877776 999999999987 4311
Q ss_pred -----------------------EEEeCCCCCCCcceEEEc-CCC---CEEEEEeCCCcEEEEEcCCcceeee
Q 001176 621 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
..+. ..+...|.+++|. ++| .+|++++.||.|++|++.++.++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 1345589999976 577 9999999999999999988755443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.32 Aligned_cols=293 Identities=15% Similarity=0.204 Sum_probs=244.0
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcC---CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
..+. |...|++++|+|++..++++|+. ||.|+|||+.+++..... ..+|...|.+++|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~ 73 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTF 73 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEEC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEE
Confidence 3344 99999999999999878888887 999999999988754321 2258999999999
Q ss_pred cCC---CCeEEEEeCCCeEEEEEecCCC-ceeeeeeeecccCCEEEEEE------ecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 414 GPD---GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAF------AHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 414 spd---g~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~------s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+
T Consensus 74 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp TTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTS
T ss_pred cCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCC
Confidence 998 7999999999999999999877 443 57799999999955 67888 899999999999999999
Q ss_pred Ce-EEEEecCCCC----CeEEEEeec--cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC---CCCEE
Q 001176 484 GR-KQYTFEGHEA----PVYSVCPHH--KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRL 553 (1132)
Q Consensus 484 ~~-~~~~~~~h~~----~v~~i~~~~--~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l 553 (1132)
++ .+..+..|.+ .+.+++|.+ .+++.++++++.||.|++||+++..... ...+...|.+++|+| +++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEE
T ss_pred CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEE
Confidence 87 6788876655 899998432 2355899999999999999999877643 455778999999999 99999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeec-----cccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC----------
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM---------- 617 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---------- 617 (1132)
++++. ++.|++||+++++....+. +|.. .|.+++|+|++. ++++++.||.|++||+..+
T Consensus 228 ~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 228 VATSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp EEEES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred EEECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 99875 7889999999877665554 7766 899999999998 7999999999999998754
Q ss_pred ---------eeEEEEeCCCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCc
Q 001176 618 ---------NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 661 (1132)
Q Consensus 618 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~ 661 (1132)
+.+..+..|. ..|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCCCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CccccccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 3555666664 4899999999999998 7999999999999765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=322.16 Aligned_cols=290 Identities=17% Similarity=0.275 Sum_probs=244.3
Q ss_pred CCCCeeEEEEccC---CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC--
Q 001176 342 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 416 (1132)
Q Consensus 342 h~~~V~~~~~spd---g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 416 (1132)
|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. +. ......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~~------------~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--LQ------------SYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--EE------------EEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--ee------------eccccCCCCcEEEEEeccCCC
Confidence 8999999999984 444566666678999999998765432 11 1112247789999999999
Q ss_pred --CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeEEEEe---
Q 001176 417 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 490 (1132)
Q Consensus 417 --g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--- 490 (1132)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.||.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999987655 5778999999999999 777 8999999999999999999999988
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe----------------------------cCCCCeEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY----------------------------DAPGNWCT 542 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~----------------------------~~~~~~v~ 542 (1132)
.+|...|.+++|+|++ .+|++++.||.|++||+++......+ ..|...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999998854 89999999999999999876543322 23888999
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--------------eeeeccccCCceEEEEEeCC--CCEEEEEEcC
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--------------KRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 606 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 606 (1132)
+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778998874 78899999987754 677777776 7999999999 9999999999
Q ss_pred CeEEEEECCCCe----eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 607 FQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 607 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
|.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999875 44467766545689999999999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=332.04 Aligned_cols=296 Identities=16% Similarity=0.209 Sum_probs=236.4
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 415 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 415 (1132)
.... |...|+|++|+|....+||+|+.||.|+|||+.+++..... .+.+|.+.|++|+|+|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~ 175 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPL 175 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCC
Confidence 3444 78899999999965558999999999999999877643210 1568999999999998
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
++++|++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.||.|++||+. ++.+..+.+|..
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~ 251 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKK 251 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSS
T ss_pred CCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccc
Confidence 78999999999999999998753 332222334455788999999999 89999999999999975 566778899999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.|.+++|+|.++ .++++++.|+.|++||+++..... ....|...|++++|+|+|++|++++. |+.|++||+.
T Consensus 252 ~v~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~ 326 (435)
T 4e54_B 252 KVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSAS 326 (435)
T ss_dssp CEEEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESS
T ss_pred eEEeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECC
Confidence 999999998753 589999999999999998766543 33567889999999999999999985 7889999999
Q ss_pred CCceeeeeccccCC-----ceEEEEEeCCCCEEEEEE------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001176 573 EGAIKRTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 635 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1132)
+++....+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~ 405 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSL 405 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCE
T ss_pred CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEE
Confidence 99887777655321 123456777777766654 34679999999999988875432 3367777
Q ss_pred -EEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 636 -RFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 636 -~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+|+|+|.+|++|+ |+.|++|+++++
T Consensus 406 ~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 406 NEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 6999999999876 789999999887
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=330.92 Aligned_cols=315 Identities=13% Similarity=0.194 Sum_probs=255.2
Q ss_pred eecCCCCCCceeccCCcccceEEee-c-CCCCeeEEEEcc-CCCeEEEEEcCCCcEEEEecCC---Cccccccceeeeec
Q 001176 316 SFAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDI 389 (1132)
Q Consensus 316 ~~~~~g~~~~~~~~d~~~~~~~~~l-~-h~~~V~~~~~sp-dg~~lla~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~ 389 (1132)
.|+|++..++....-...++++.++ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.....
T Consensus 34 ~f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-------- 104 (437)
T 3gre_A 34 EFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-------- 104 (437)
T ss_dssp GGCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC--------
T ss_pred hcCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce--------
Confidence 3677777776553333667888888 5 889999999999 998 799999999999999976 331110
Q ss_pred ccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec---CCCceeee-----ee--eec--ccCCEEEEE
Q 001176 390 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQH-----LE--IDA--HVGGVNDIA 457 (1132)
Q Consensus 390 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~---~~~~~~~~-----~~--l~~--h~~~v~~v~ 457 (1132)
....+|.+.|.+++|+|++++|++|+.||.|++||++ +++..... .. +.. +...+.++.
T Consensus 105 ---------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 175 (437)
T 3gre_A 105 ---------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMR 175 (437)
T ss_dssp ---------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEE
T ss_pred ---------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEE
Confidence 0012599999999999999999999999999999995 44433211 01 111 456677777
Q ss_pred --EecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001176 458 --FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 533 (1132)
Q Consensus 458 --~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 533 (1132)
+++++. +|++|+.|+.|++||+++++.+..+.+ |...|++++|+|+ +.+|++|+.||.|++||+++......
T Consensus 176 ~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 176 AFVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE--CCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp EEECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT--SCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC--CCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 557777 899999999999999999999999998 8999999999876 48999999999999999999877777
Q ss_pred ec-CCCCeEEEEEEc----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc------------------------
Q 001176 534 YD-APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------ 584 (1132)
Q Consensus 534 ~~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------ 584 (1132)
+. .+...|.+++|+ +++.+|++++. ++.|++||+++++.+..+.++.
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 327 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR 327 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred EecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence 65 677799999665 46778988864 8889999999999888877542
Q ss_pred -CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC-----------------------------------C
Q 001176 585 -KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----------------------------------G 628 (1132)
Q Consensus 585 -~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~ 628 (1132)
...|.+++|+ ++++|++++.|+.|++||+.+++....+..+. +
T Consensus 328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 406 (437)
T 3gre_A 328 SLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH 406 (437)
T ss_dssp SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred cCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence 2258889999 77899999999999999999998877776531 4
Q ss_pred CCCcceEEEcCC--CCEEEEEeCCCcEEEEE
Q 001176 629 LPASPRLRFNKE--GSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 629 ~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~ 657 (1132)
...|++++|+++ +.+|++|+.||.|++|+
T Consensus 407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 568999999997 78999999999999995
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=317.73 Aligned_cols=315 Identities=15% Similarity=0.206 Sum_probs=252.4
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEE
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 645 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 645 (1132)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+....+...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 344556667778888877 89999999999 999999999999999999998888887545566899999999 789999
Q ss_pred EEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcC
Q 001176 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 725 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1132)
+++.|+.|++||+.+. . ...+..
T Consensus 136 s~~~d~~i~iwd~~~~-~-~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-V-IQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC-E-EEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC-c-eEEEec-------------------------------------------------------
Confidence 9999999999998642 1 110000
Q ss_pred CcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCC
Q 001176 726 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 805 (1132)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 805 (1132)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEE
Q 001176 806 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 884 (1132)
Q Consensus 806 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 884 (1132)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.++
T Consensus 159 ------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 159 ------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp ------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred ------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 0 003 56789999999999999998 899999999 578889999999999999
Q ss_pred EEeCCCCC-eEEEEeCCCcEEEEEccc----ceeeeeeccccCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccc
Q 001176 885 AFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 885 ~~sp~~~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~ 958 (1132)
+|+| +++ +|++|+.||.|++||+.+ +..+..+ +|...|++++|+| ++++|++++.|+.|++||+.+++....
T Consensus 211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999 777 999999999999999998 5666666 6999999999999 999999999999999999998765432
Q ss_pred eeeeCC--CCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001176 959 RFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1036 (1132)
Q Consensus 959 ~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg 1036 (1132)
...... ..+. ..+. +.|+|+ ..+..++|+|||++ +|+.||
T Consensus 289 ~~~~~~~~~~~~---~~~~-~~~~p~--------------------------------~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 289 IIIHPHRQFQHL---TPIK-ATWHPM--------------------------------YDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEECCBCCCTTS---CCCC-CEECSS--------------------------------SSEEEEECBCCTTT--CTTCCC
T ss_pred cccccccccccc---cceE-EeccCC--------------------------------CCceEEEecCCccc--ccCCCC
Confidence 211110 0111 1122 244443 34566888999988 899999
Q ss_pred cEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1037 AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1037 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.|++||+.+++.+..+..+ .|...+..++|+| ++.+|++|+ |+.|++||+.+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~---------~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDP---------NAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBT---------TBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCC---------CCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 9999999999998777521 3556677789999 889999997 99999999975
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=315.70 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=231.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCC-------CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
-.-+|+|++|+|||+ +|++|+.| +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 345899999999998 78888643 36999999876543221111 11112367889999988774
Q ss_pred CCCCeEEEE-----------eCCCeEEEEEecCCCceee-ee-----eeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 415 PDGLMLGVA-----------FSKHIVHLYTYNPTGELRQ-HL-----EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 415 pdg~~las~-----------~~dg~i~iwd~~~~~~~~~-~~-----~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
++.+++| +.|+.+++|++.+...... .. ....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 5566665 4578899999987653221 11 112345568999999999954455677899999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCeEEEEEEcCCCCEEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|||+.+++++..+. |...|.+++|+|+ |.++++++.+ .+++|+..++..... ...|...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTD--GKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTT--SSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccC--CceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 99999999998886 7788999999885 4889988855 566666666665543 3456778999999999999999
Q ss_pred EecCCCCCCeEEEEeCCCCce----eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE-eCCCCCC
Q 001176 556 CGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP 630 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (1132)
++.++.....+++|++..+.. ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+|. .
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--F 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--S
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--C
Confidence 987555455788999876643 345666666 8999999999999999999999999999999998876 5564 4
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|++++|+|||++|++|+.|++|+||++..+
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999755
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=306.94 Aligned_cols=302 Identities=14% Similarity=0.163 Sum_probs=249.5
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999987665 6788999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--eE
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--WC 541 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~-----------~~~~~~~~~--~v 541 (1132)
|+.+++.+..+. |...|.+++|+|++ .++++++.+ +.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999999887 88999999998854 899999999 9999999987642 233444555 89
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 542 TMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
.+++|+|+++++++++. ++.|++||+++ ++.+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999875 78899999998 788888888876 8999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
..+... ..+.+++|+|+++++++++.++...+|......
T Consensus 254 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEECS---SCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 888732 378999999999999999999865555432210
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
....+++|+...... ... + ..|...|.+++|+|+
T Consensus 293 ---------------------------------------~~~~i~~~d~~~~~~---~~~--~--~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 293 ---------------------------------------GKFEARFYHKIFEEE---IGR--V--QGHFGPLNTVAISPQ 326 (369)
T ss_dssp -----------------------------------------CEEEEEETTTCCE---EEE--E--ECCSSCEEEEEECTT
T ss_pred ---------------------------------------CcceeEEEecCCCcc---hhh--e--ecccCcEEEEEECCC
Confidence 012455555543211 111 1 226788999999999
Q ss_pred CceEEeecccceeEEEeeccc
Q 001176 781 GLSLLALASNAVHKLWKWQRT 801 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~ 801 (1132)
++.|++++.||.|++|++...
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp SSEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEcCCCeEEEEECccc
Confidence 999999999999999998653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=326.70 Aligned_cols=286 Identities=13% Similarity=0.126 Sum_probs=225.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC--ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
+.+.|++++|+|+|+ +|++|+.|+.|+|||+.++ +.+.. +.+|.+.|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7999999999999999987 33332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe---EEEEecC-CCC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 495 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~-h~~ 495 (1132)
|++|+.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773333446778999999999999999 79999999999999999887 4678888 999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCC------------------CceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL------------------GSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
.|.+++|+|++ .+|++++.|+.|++||+... .....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999998854 89999999999999998532 233344 7888999999999999999997
Q ss_pred cCCCCCCeEEEEeCCCCce----eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe---------------
Q 001176 558 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 618 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 618 (1132)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 78899999999987 788888877 89999999999998888766655 66654211
Q ss_pred ------------------------eEEEEeC-----------CCCCCCcceEEEcCC-CC---EEEEEeCCCcEEEEEc
Q 001176 619 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 658 (1132)
Q Consensus 619 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~~-~~---~l~~~~~dg~i~iw~~ 658 (1132)
....... ..|...|.++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014457889987663 33 6999999999999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=315.30 Aligned_cols=297 Identities=14% Similarity=0.150 Sum_probs=250.4
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCeEEEEEEcCC----C---CEE
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TRL 553 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l 553 (1132)
...+.+|...|++++|+| .+|++++.||.|++||+.... ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999976 699999999999999999888 67788899999999999999 9 999
Q ss_pred EEEecCCCCCCeEEEEeCCCCce-----eeeecccc----CCceEEEEEe----CCCCE-EEEEEcCCeEEEEECCC---
Q 001176 554 FSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN--- 616 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~--- 616 (1132)
++++. ++.|++||+.+++. ...+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99875 77899999998887 88888874 3389999999 99999 99999999999999988
Q ss_pred ---CeeEE-----EEeC-----CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCC
Q 001176 617 ---MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683 (1132)
Q Consensus 617 ---~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1132)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~------------ 226 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ------------ 226 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc------------
Confidence 66655 6643 3334589999999999 9999999999999998765 222211110
Q ss_pred CCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEec
Q 001176 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763 (1132)
Q Consensus 684 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 763 (1132)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 764 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 764 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
..| .. . ...|.++
T Consensus 227 --~~h-------------------------------------------------------------~~---~-~~~i~~i 239 (397)
T 1sq9_A 227 --HSM-------------------------------------------------------------IN---N-SNSIRSV 239 (397)
T ss_dssp --C----------------------------------------------------------------C---C-CCCEEEE
T ss_pred --ccc-------------------------------------------------------------cc---c-CCccceE
Confidence 000 00 1 4467888
Q ss_pred EEeeCCCEEEEee-C---CeEEEEECCCCeEEEEeeC-------------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 001176 844 ALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQIY 906 (1132)
Q Consensus 844 ~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 906 (1132)
+|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|++|
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 8888888888887 7 8899999998888888888 999999999999 89999999999999999
Q ss_pred Ecccceeeeeec------cc---------------cCCeeEEEEcCCC----------CEEEEEcCCCcEEEEECCCc
Q 001176 907 NVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 907 d~~~~~~~~~l~------~h---------------~~~V~~l~~spdg----------~~l~s~~~D~~i~iwd~~~~ 953 (1132)
|+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|++.++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999999999998 88 9999999999998 79999999999999999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=319.30 Aligned_cols=349 Identities=14% Similarity=0.164 Sum_probs=241.2
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeC-----------CCCCCC
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPA 631 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 631 (1132)
..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 3477888888888888888877 899999999 999999999999999999998765444321 124458
Q ss_pred cceEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCC
Q 001176 632 SPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 710 (1132)
Q Consensus 632 v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 710 (1132)
|.+++|+| ++.+|++++.||.|++||+.++ +....+.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~----------------------------------------- 139 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN----------------------------------------- 139 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-----------------------------------------
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-----------------------------------------
Confidence 99999999 7889999999999999998766 2111110
Q ss_pred CCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccc
Q 001176 711 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 790 (1132)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 790 (1132)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee---CCCEEEEee-CCeEEEEECC
Q 001176 791 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMM 866 (1132)
Q Consensus 791 g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~---dg~~la~~s-dg~i~vwd~~ 866 (1132)
+ ...+.++++++ ++.++++++ ++.|++||+.
T Consensus 140 --------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 140 --------------------------------------------F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp --------------------------------------------C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred --------------------------------------------C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 1 33345555555 455888888 8999999999
Q ss_pred CCeEEEEeeCCCCCeEEEEEeCCCCC-eEEEEeCCCcEEEEEcccce-eeeee---------------ccccCCeeEEEE
Q 001176 867 TFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVDE-VKTKL---------------KGHQNRITGLAF 929 (1132)
Q Consensus 867 ~~~~~~~~~~~~~~i~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~ 929 (1132)
+++.+..+.+|...|++++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|...|++++|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 9999999999999999999999 666 69999999999999998764 33333 678999999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecC
Q 001176 930 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWS 1008 (1132)
Q Consensus 930 spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~ 1008 (1132)
+|++++|++++.|+.|++||+.+++.............. ......+.....+.+++++.++.|++||+ ++..+..+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 999999999999999999999987643321111111110 01222333344556666689999999999 66666665
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeC
Q 001176 1009 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1088 (1132)
Q Consensus 1009 ~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 1088 (1132)
.+|...|++++|+|++++|++|+.||.|++||+.+++.+...... .....+.|.....+.+++.
T Consensus 331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET--------------TTKSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce--------------EeccccccccceeecccCc
Confidence 456899999999999999999999999999999999876554311 1112333435566778889
Q ss_pred CCcEEEEecCCC
Q 001176 1089 DGAVHVVEPSDA 1100 (1132)
Q Consensus 1089 Dg~i~vW~~~~~ 1100 (1132)
|+.+++|+...-
T Consensus 395 ~~~~~~W~~~~~ 406 (408)
T 4a11_B 395 EGGTSAWSHPQF 406 (408)
T ss_dssp ------------
T ss_pred cCceeecCCccc
Confidence 999999987653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=336.23 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=220.6
Q ss_pred ccCCCCcCeEEEEEcCCC-CeEEEEeCCCeEEEEEecCCCce--eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 400 LLNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg-~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 367899999999999964 79999999999999999875432 23346789999999999999999 89999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCeEEEEEEcCCC--C
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADG--T 551 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 551 (1132)
++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCC--CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 999999999999999999999999998854 89999999999999998654332222 3577789999999987 5
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
.+++++. |+.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888875 78899999999999999999887 8999999999999999999999999999999988777643 36
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
|.+++|+|++.++++++ ++.|++||+.++ .....+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~ 640 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLK 640 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEC
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhc
Confidence 89999999998887765 557999999988 5555443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=299.17 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=213.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~v 478 (1132)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 123368899999999999864 77 8999999999999
Q ss_pred EECCCCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCC-----
Q 001176 479 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 549 (1132)
Q Consensus 479 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 549 (1132)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999999875568999999999999999987642 4567788999999999997
Q ss_pred --------CCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCC---CEEEEEEcCCeEEEEEC
Q 001176 550 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 550 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~ 614 (1132)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|+.|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 578999885 7889999998766 5677888887 89999999985 78999999999999999
Q ss_pred CCCe---eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 615 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 615 ~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+.. ....+..+.+...|.+++|+|+|++|++++.||.|++|+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 8743 122332233445799999999999999999999999999753
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=311.74 Aligned_cols=290 Identities=16% Similarity=0.244 Sum_probs=241.4
Q ss_pred CCCC--eeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSN--VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~--V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
|.+. +.+++|++ .. +++++.|+.|+|||+.+++.... ....|...|.+++|+|++++
T Consensus 90 ~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 90 IIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp CCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSE
T ss_pred CcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCE
Confidence 5444 45566665 43 55667899999999999876542 12248899999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeEEEEecCCCCCeE
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVY 498 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~ 498 (1132)
|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.||.|++||+. .+..+..+.+|...|.
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence 9999999999999999987665 577999999999994 45 79999999999999998 5677888999999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+++|+|+ +.+|++++.||.|++||+++......+..|...|.+++|+|++..+++.+. +..++.|++||+.+++.+.
T Consensus 222 ~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 222 GLAWRSD--GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEECTT--SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEE
T ss_pred EEEEcCC--CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEE
Confidence 9999884 489999999999999999998888888899999999999998765554431 1247889999999999998
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.+..+. .+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++.+|++++.||.|++|
T Consensus 299 ~~~~~~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 299 TVDAGS--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEECSS--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred EEeCCC--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 886433 799999999999999954 8999999999997766654433445589999999999999999999999999
Q ss_pred EcCCccee
Q 001176 657 ANSDGVRL 664 (1132)
Q Consensus 657 ~~~~~~~~ 664 (1132)
++.++...
T Consensus 377 ~~~~~~~~ 384 (401)
T 4aez_A 377 RVYDGDHV 384 (401)
T ss_dssp ECCC----
T ss_pred ECCCCccc
Confidence 99988433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=315.56 Aligned_cols=261 Identities=10% Similarity=0.059 Sum_probs=210.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
-..+|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 347999999999999 799999999999 6544432 45799999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC-----C
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----P 496 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-----~ 496 (1132)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ +|++++.||.|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 5666666654433211 22 4688999999999999 899999999999999544 667777 765 4
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCeEEEEEEcCCCCEEEEEecCCCCCCe
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1132)
|.+++|+|+ |++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. |+.
T Consensus 132 v~svafSPD--G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~t 203 (588)
T 2j04_A 132 YHCFEWNPI--ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNS 203 (588)
T ss_dssp EEEEEECSS--SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCC
T ss_pred EEEEEEcCC--CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCe
Confidence 999999885 49999999999999999998753 3444 5677899999999999 666654 788
Q ss_pred EEEEeCCCCce---eeeec-cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--cC
Q 001176 566 LVEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NK 639 (1132)
Q Consensus 566 i~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~ 639 (1132)
+++||+..+.. .+++. +|.. .|.+++|+ ++.+++++ ++.|++||+.+++......+| ...|..++| +|
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~ 277 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEK 277 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCS
T ss_pred EEEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCC
Confidence 99999988774 34564 5554 89999999 68888887 699999999988874444344 458999999 99
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001176 640 EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~ 659 (1132)
++..+++++.||+ ++|...
T Consensus 278 d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS
T ss_pred CCCEEEEEcCCCC-EEEeec
Confidence 9999999999999 999864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=320.10 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=226.7
Q ss_pred eeeccccCCceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1132)
.....|.. .|++++|+|. +++|++|+.||.|+|||+.+++....+...++...|.+++|+| ++.+|++++.||+|++
T Consensus 113 ~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34445555 7999999994 5789999999999999999887666666555566899999998 7899999999999999
Q ss_pred EEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccc
Q 001176 656 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 735 (1132)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1132)
||+.++ .. ..+..
T Consensus 192 wd~~~~-~~-~~~~~----------------------------------------------------------------- 204 (435)
T 4e54_B 192 QDFKGN-IL-RVFAS----------------------------------------------------------------- 204 (435)
T ss_dssp EETTSC-EE-EEEEC-----------------------------------------------------------------
T ss_pred eeccCC-ce-eEEec-----------------------------------------------------------------
Confidence 998654 10 00000
Q ss_pred ccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccc
Q 001176 736 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 815 (1132)
Q Consensus 736 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 815 (1132)
.
T Consensus 205 -------------------------------------------~------------------------------------ 205 (435)
T 4e54_B 205 -------------------------------------------S------------------------------------ 205 (435)
T ss_dssp -------------------------------------------C------------------------------------
T ss_pred -------------------------------------------c------------------------------------
Confidence 0
Q ss_pred ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 816 ~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
..+ ...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..++
T Consensus 206 -----------------~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 206 -----------------DTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp -----------------SSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred -----------------CCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence 001 44567889999999999998 8999999986 466778899999999999999545689
Q ss_pred EEEeCCCcEEEEEcccceeeee---eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCC
Q 001176 895 AIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 971 (1132)
Q Consensus 895 asg~~dg~v~iwd~~~~~~~~~---l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 971 (1132)
++|+.|+.|+|||+.+.+.... ..+|...|++++|+|+|++|++++.|++|++||+.+++......... .... ..
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~~~~-~~ 344 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP-HRHF-QH 344 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC-CCCC-SS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc-cccc-cc
Confidence 9999999999999988764433 46799999999999999999999999999999999877543221111 0000 00
Q ss_pred CCceeEEECCCCcEEEEE-------------eCCeEEEEeC-CCCceeecCCCCCCCCCeEEE-EEccCCCEEEEEecCC
Q 001176 972 VGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFCDG 1036 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~-------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i-~~s~dg~~las~~~dg 1036 (1132)
..+....|+|++..++++ .++.|++||. +++.+..+. .+|...|.++ +|+|||++||+|+ |+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--DPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--CSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--CCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 123345666666665553 2357999999 666666553 3457888887 6999999999886 88
Q ss_pred cEEEEeCCCcce
Q 001176 1037 AIGVFDAETLRF 1048 (1132)
Q Consensus 1037 ~i~vwd~~~~~~ 1048 (1132)
+|+|||+++|+.
T Consensus 422 ~i~iW~~~~gk~ 433 (435)
T 4e54_B 422 HILIWSQQEART 433 (435)
T ss_dssp EEEECCCC----
T ss_pred cEEEEECCcCee
Confidence 999999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=310.09 Aligned_cols=282 Identities=15% Similarity=0.258 Sum_probs=242.3
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
-++.|+||+++ +||+|. |++|+|||+.+|+.... + .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~--~---------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL--L---------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE--E---------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE--E---------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999864 688876 89999999999986542 1 1457889999999999999999999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEEEee
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i~~~ 503 (1132)
.||+|+|||+.+++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 678999999988875 55 8999999999999998864 4567889999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCE-EEEEecCCCCCCeEEEEeCCCCceee
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+.+ .++++++.|+.+++|+...+.. ......+...|.+++|+|++.. +++++. ..|+.|++||+.++++..
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 755 8999999999999999987653 3466778889999999997754 445443 347899999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|||++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 588899999999998865 789999999999999999987754 89999999999999999999999999
Q ss_pred EcCCc
Q 001176 657 ANSDG 661 (1132)
Q Consensus 657 ~~~~~ 661 (1132)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=309.19 Aligned_cols=249 Identities=14% Similarity=0.205 Sum_probs=213.0
Q ss_pred cCCCCcCeEEEEEcCC----CCeEEEEeCCCeEEEEEecCCCceeeeeeee--cccCCEEEEEEecC----CCcEEEEEE
Q 001176 401 LNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHP----NKQLCIVTC 470 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d----~~~~~l~s~ 470 (1132)
..+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEEe
Confidence 5689999999999984 4566666677799999999877665443332 26688999999999 55 89999
Q ss_pred cCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCeEEEEEEc
Q 001176 471 GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYS 547 (1132)
Q Consensus 471 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s 547 (1132)
+.||.|++||+.+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++++....+ ..|...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 99999999999999999999999999999999883 3389999999999999999998887777 6788999999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc----------------------------ccCCceEEEEEeCCCCE
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG----------------------------FRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~ 599 (1132)
|++++|++++. ++.|++||+++++....+.. |.. .|.+++|+ +++
T Consensus 171 ~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~~ 243 (366)
T 3k26_A 171 LLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GDL 243 (366)
T ss_dssp TTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TTE
T ss_pred CCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CCE
Confidence 99999999985 77899999998776554443 555 89999999 779
Q ss_pred EEEEEcCCeEEEEECCCCee--------------EEEEeCCCCCCCcceEEEcCC--CCEEEEEeCCCcEEEEEcCCc
Q 001176 600 FLAAGDEFQIKFWDMDNMNM--------------LTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++++.|+.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 99999999999999987644 666666644 7999999999 999999999999999999876
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=309.91 Aligned_cols=308 Identities=15% Similarity=0.181 Sum_probs=246.5
Q ss_pred cceEEeec-CCCCeeEEEEcc-CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
......+. |.+.|++++|+| +++ +|++|+.||.|+|||+.+++.......... .........+|...|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEE
T ss_pred CcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEE
Confidence 34445555 999999999999 998 799999999999999998876543111000 000111134699999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC---CCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 412 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 412 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d---~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+|+| ++.+|++++.||.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCccee
Confidence 9999 78899999999999999999876554 22 37788999999984 44 7999999999999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEe---------------cCCCCeEEEEEEcCCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDY---------------DAPGNWCTMMAYSADGT 551 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~---------------~~~~~~v~~~~~s~~~~ 551 (1132)
..+.+|...|.+++|+|++. .++++++.||.|++||++.... ...+ ..+...|.+++|+|+++
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EEECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999988652 3799999999999999987652 2222 46778999999999999
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+|++++. ++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..|.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999985 77899999999887655543221 122222233445667778889999999999999999998775
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 335 ~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 335 K--TVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp S--CEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred C--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 4 8999999999999999999999999999887
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=295.69 Aligned_cols=249 Identities=14% Similarity=0.212 Sum_probs=208.1
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc--cccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
.+. |.+.|++++|+|+|+ +||+|+.|++|+|||+.++. .+. .+.+|.++|.+++|+|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~ 63 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAH 63 (297)
T ss_dssp ECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECC
T ss_pred eccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecC
Confidence 344 999999999999999 69999999999999997542 222 2678999999999987
Q ss_pred C--CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--EEEE
Q 001176 416 D--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYT 489 (1132)
Q Consensus 416 d--g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~--~~~~ 489 (1132)
+ |++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|+.|++||++++. ....
T Consensus 64 ~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 64 PKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp GGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred CCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeee
Confidence 4 899999999999999999986422 22356789999999999998 77 89999999999999998763 2467
Q ss_pred ecCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCeEEEEEEcCCC---C
Q 001176 490 FEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---T 551 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~ 551 (1132)
+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+.+|...|.+++|+|++ +
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 78999999999999863 24799999999999999998766 345678899999999999995 7
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCc---eeeee--ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
+|++++. |+.|++||++++. ....+ ..+.. .|.+++|+|++++|++++.|+.|++|+..
T Consensus 221 ~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8999875 7889999998643 11223 34444 79999999999999999999999999976
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=289.66 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=247.5
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.+....+.+|...|.+++| +++ .+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677899999999999999 644 78999999999999999988888888889999999999999999999985 7
Q ss_pred CeEEEEeCCCC---ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-
Q 001176 564 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 639 (1132)
Q Consensus 564 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~- 639 (1132)
+.+++|++... +.+..+.+|.. .+.+++| +++++++++.||.|++|| .++.+..+..+.. .+.+++|.|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence 78999998754 56777777776 8999999 577999999999999999 6777777776644 799999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCccc
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 719 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1132)
++.++++++.||.|++||.... ...+..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~------------------------------------------------- 181 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IKTFSG------------------------------------------------- 181 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EEEECS-------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---EEEEec-------------------------------------------------
Confidence 9999999999999999983211 100000
Q ss_pred CccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeec
Q 001176 720 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 799 (1132)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~ 799 (1132)
T Consensus 182 -------------------------------------------------------------------------------- 181 (313)
T 3odt_A 182 -------------------------------------------------------------------------------- 181 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC
Q 001176 800 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 878 (1132)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 878 (1132)
.| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|.
T Consensus 182 ----------------------------------~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 182 ----------------------------------IH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp ----------------------------------SC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ----------------------------------cC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 03 66789999999998 66666 8999999999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccc
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~ 955 (1132)
..|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.|+.|++|++.+++.
T Consensus 226 ~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 226 SFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp SCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred ceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999999999 77 588999999999999999999999999999999999999998 66799999999999998764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=316.55 Aligned_cols=222 Identities=7% Similarity=0.020 Sum_probs=179.2
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457899999999999999999999999 755543 346899999999999998 366666666432
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-----eEEEEEEcCCCCEEEEEec
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-----WCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 558 (1132)
..+..+ .|...|.+++|+|+ |.+|++++.||.|++||... ....+. |.. .+.+++|||||++|++++.
T Consensus 77 -~~~~~~-~~~~~V~~vawSPd--G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 77 -NGLLNS-QPVCYPRVCKPSPI--DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp -SCSSTT-SCSCCEEEEEECSS--SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred -ceEeec-CCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 222233 46889999999885 48999999999999999544 444445 554 5999999999999999985
Q ss_pred CCCCCCeEEEEeCCCCce-------eeee----ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee---EEEEe
Q 001176 559 SKEGESHLVEWNESEGAI-------KRTY----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM---LTTVD 624 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~ 624 (1132)
|++|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++.. ..++.
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 88999999998863 5666 55554 89999999999 88899999999999988774 34553
Q ss_pred -CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 625 -ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 625 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.| ...|.+++|+ |+.|++++ +++|++||+.++
T Consensus 223 ~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 223 NAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp CCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred ccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 44 3479999999 68899887 699999999877
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=303.08 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=217.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|.++|.+++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 34589999999999999999999999999999999875 223336789999999999999999 899999999999999
Q ss_pred CCCCeEEEE--ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 481 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 481 ~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+.+++.... +..|...|.+++|+|++ .+|++++.|+.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 999875544 46799999999998754 8999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCCCeEEEEeC------------------CCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 555 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
+++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.|+.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9975 778999995 46788888888776 899999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999987644 79999999999988877 999999999987
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=308.20 Aligned_cols=292 Identities=12% Similarity=0.094 Sum_probs=214.8
Q ss_pred cceEEEEEecCCceEEeeccc-------ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 770 SKVVRLIYTNSGLSLLALASN-------AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
.+|.+++|+|||+.|++|+.+ +.|++|++............ ......+.+ | ...+.+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~-------------~~~~~~l~~--~-~~~v~s 78 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH-------------ILSEFALED--N-DDSPTA 78 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE-------------EEEEEECCT--T-SCCCCE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee-------------eeeEEEccC--C-CCceEE
Confidence 579999999999999998754 35999987643221100000 000011222 5 667776
Q ss_pred EEEeeCCCEEEEe-----------e-CCeEEEEECCCCeEE----EEe-----eCCCCCeEEEEEeCCCCCeEEEE--eC
Q 001176 843 IALSKNDSYVMSA-----------S-GGKVSLFNMMTFKVM----TMF-----MSPPPAATFLAFHPQDNNIIAIG--ME 899 (1132)
Q Consensus 843 ~~~s~dg~~la~~-----------s-dg~i~vwd~~~~~~~----~~~-----~~~~~~i~~l~~sp~~~~~lasg--~~ 899 (1132)
+++ ++..+++| + |+.+++|++.+.... ... ..+...+.+++||| ||+++|++ +.
T Consensus 79 ~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~ 155 (365)
T 4h5i_A 79 IDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKV 155 (365)
T ss_dssp EEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCS
T ss_pred EEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCC
Confidence 654 56666665 3 567999998654321 111 12445689999999 89887654 47
Q ss_pred CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 900 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
|++|+|||+.+++++..+. |.+.|++++|+|||++|++++.|+ +++|+..++.... .....+|. ..+.+++|
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~f 227 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINF 227 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEE
Confidence 8999999999999988886 778899999999999999998655 6677776655322 12233333 56899999
Q ss_pred CCCCcEEEE-EeCC----eEEEEeCC-CCc-eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 980 HNDQTHLLV-VHES----QISVYDSK-LEC-SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 980 s~dg~~l~~-~~d~----~v~vwd~~-~~~-~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
+|+|+++++ +.++ .+++|++. ... ........+|...|++++|||||++||+|+.||+|+|||+.+++++..+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 999999998 4555 57888883 222 1112223456899999999999999999999999999999999988764
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
. .+|...|++++|+| |+++|+||+.|++|+||++..
T Consensus 308 ~----------~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 K----------QAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp T----------TSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred c----------CcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 2 48899999999999 899999999999999999954
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=312.75 Aligned_cols=300 Identities=11% Similarity=0.182 Sum_probs=233.3
Q ss_pred ecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC------------cC
Q 001176 340 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------IS 407 (1132)
Q Consensus 340 l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 407 (1132)
+.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. +.
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCc
Confidence 45678999999999998 7999999999999999987631100000 000011256787 88
Q ss_pred eEEEEEcCCC--CeEEEEeCCCeEEEEEecCCCcee------------------------------------ee-eeeec
Q 001176 408 VNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QH-LEIDA 448 (1132)
Q Consensus 408 V~~v~~spdg--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~l~~ 448 (1132)
|.+++|+|++ .+|++++.|++|++||+.++.... .. ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 799999999999999998643210 00 11367
Q ss_pred ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEEE-------EecCCCCCeEEEEeeccCCccEEEEEecCCeE
Q 001176 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 520 (1132)
Q Consensus 449 h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 520 (1132)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 88998 799999999984 44444 2568999999999987532 799999999999
Q ss_pred EEEEcCCCCc----eEEecCCCC------------eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-Cceeeeeccc
Q 001176 521 KAWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGF 583 (1132)
Q Consensus 521 ~~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~ 583 (1132)
++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++++..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 899999999999999886 27899999997 8888888887
Q ss_pred cCC-----------c---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-----------------------
Q 001176 584 RKR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------- 626 (1132)
Q Consensus 584 ~~~-----------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 626 (1132)
... . +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 530 0 223899999999999999999999999998876422110
Q ss_pred -------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 627 -------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 627 -------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.....|..++|+|++++|++++.++ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123678899999999999998875 777764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=304.41 Aligned_cols=298 Identities=12% Similarity=0.149 Sum_probs=237.9
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-cccCCceEEEEEeCC---CCEEEEEEcCCe
Q 001176 533 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTT---RNRFLAAGDEFQ 608 (1132)
Q Consensus 533 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~ 608 (1132)
...+|...|.+++|+|++..+++++....+++.|++||+.+++...... +|.. .|.+++|+|+ +.++++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS-CEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC-cEEEEEEcCCCCCCceEEEecCCCe
Confidence 3456889999999999998777665321237899999999988765544 4444 8999999999 699999999999
Q ss_pred EEEEECCCCe-eEEEEeCCCCCCCcceEE------EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCC
Q 001176 609 IKFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 681 (1132)
Q Consensus 609 i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1132)
|++||+.+++ .+..+..|.. .|.++. |+|++++|++++.||.|++||+.++......+..+...
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------- 162 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE------- 162 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS-------
T ss_pred EEEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC-------
Confidence 9999999988 7888876644 789984 57899999999999999999998773233333222110
Q ss_pred CCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEE
Q 001176 682 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 761 (1132)
Q Consensus 682 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~ 761 (1132)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEE----EecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCC
Q 001176 762 RLPDSIAASKVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 837 (1132)
Q Consensus 762 ~~~~~~~~~~i~~~~----~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~ 837 (1132)
....+.+++ |++++..+++++.||.|++||+.. +..... .. | .
T Consensus 163 ------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~--~~--~-~ 209 (357)
T 3i2n_A 163 ------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN----------------------MALRWE--TN--I-K 209 (357)
T ss_dssp ------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT----------------------TEEEEE--EE--C-S
T ss_pred ------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc----------------------Cceeee--cC--C-C
Confidence 123466666 789999999999999999998743 222111 11 5 7
Q ss_pred CCeeEEEEee---CCCEEEEee-CCeEEEEECCCCeEEEEee-----CCCCCeEEEEEeCCCCC-eEEEEeCCCcEEEEE
Q 001176 838 ESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-----SPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYN 907 (1132)
Q Consensus 838 ~~v~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~~~~~~~-----~~~~~i~~l~~sp~~~~-~lasg~~dg~v~iwd 907 (1132)
..|.+++|+| ++.++++++ ||.|++||+.+++....+. +|...|++++|+| +++ +|++|+.||.|++||
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEee
Confidence 8899999999 999999998 9999999998877655554 8999999999999 777 899999999999999
Q ss_pred cccc-------------------eeeeeeccccCCeeEEEEcCCCCEEE-EEcCCCcEEEEECCCcc
Q 001176 908 VRVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 908 ~~~~-------------------~~~~~l~~h~~~V~~l~~spdg~~l~-s~~~D~~i~iwd~~~~~ 954 (1132)
+.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9854 45677889999999999999999998 89999999999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=288.41 Aligned_cols=281 Identities=15% Similarity=0.263 Sum_probs=236.3
Q ss_pred eeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC
Q 001176 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 425 (1132)
Q Consensus 346 V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 425 (1132)
.++|+||+++ +||+|. |++|+|||+.+++.+.. + .+.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~--~---------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL--L---------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE--E---------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE--E---------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 678775 99999999999987642 1 14578899999999999999999999
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEEEeec
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i~~~~ 504 (1132)
||+|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+...+ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987665 57789988876655 456 7999999999999998875 45678889999999999977
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCEEE-EEecCCCCCCeEEEEeCCCCceeee
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
.+ .++++++.|+.|++||+++++. ......+.+.|.+++++|++..++ .++. ..++.|++||.........
T Consensus 161 ~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 161 DG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp TS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC--TTTCEEEEEETTTCCEEEE
T ss_pred CC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec--CCCCEEEEEeccccccccc
Confidence 54 8999999999999999987653 335566778999999999876554 3332 3478899999998887766
Q ss_pred eccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..... .+..+.|+|+++.+++++ .|+.|++||+.+++++..+.+|.. .|++++|+|+|++|++|+.||+|++||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 55433 688999999999988765 799999999999999999987754 899999999999999999999999999
Q ss_pred cCCc
Q 001176 658 NSDG 661 (1132)
Q Consensus 658 ~~~~ 661 (1132)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=312.33 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=200.3
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
.+.++|.+++|+|||++||+|+.|+.|++||+.++. ......+.+|...|.+++|+|+++ +|++++.|+.|++||+.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC---
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEcC
Confidence 367799999999999999999999999999999862 122336789999999999999998 89999999999999999
Q ss_pred CCe---EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecC-CCCeEEEEEEcCCCCEEEE
Q 001176 483 AGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 483 ~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~l~~ 555 (1132)
+++ ....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... ...+.. |...|.+++|+|++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPN--EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTT--SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCC--CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 887 67788899999999999885 48999999999999999998763 556666 8999999999999999999
Q ss_pred EecCCCCCCeEEEEeCC------------------CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 556 CGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
++. ++.|++||+. .++++..+ +|.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 164 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 985 7789999985 35566666 6665 8999999999999999999999999999998
Q ss_pred ee----EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 618 NM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 618 ~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+. +..+..|.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 238 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 87 666666644 79999999999999988776665 66654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=298.26 Aligned_cols=251 Identities=18% Similarity=0.288 Sum_probs=207.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~ 477 (1132)
.+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886432 23468899999999999863 67 799999999999
Q ss_pred EEECCCC--eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCC---
Q 001176 478 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 549 (1132)
Q Consensus 478 vwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 549 (1132)
+||++++ +.+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999999986678999999999999999987643 2345667788999999997
Q ss_pred --------------CCEEEEEecCCCCCCeEEEEeCCCC---ceeeeeccccCCceEEEEEeCCC----CEEEEEEcCCe
Q 001176 550 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 608 (1132)
Q Consensus 550 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 608 (1132)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888874 788999999755 46677888877 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 609 IKFWDMDNM---N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998762 1 12223333 34799999999999999999999999999753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-31 Score=304.83 Aligned_cols=272 Identities=21% Similarity=0.320 Sum_probs=238.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|...|+|++| +++ ++++|+.||.|++||+.+++.... +.+|.+.|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 6678999888 677 699999999999999998876543 6789999999999 889999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE---EEecCCCCCeE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 498 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~---~~~~~h~~~v~ 498 (1132)
+|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++||+.+++.. ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987655 6778999999999974 4 7999999999999999988765 67889999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
++++ ++.++++++.||.|++||+++......+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999998 4689999875 7889999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe---------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.+.+|.. .|.+++| ++.++++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeC
Confidence 9999887 8999988 68899999999999999997765 7777776644 8999999 7889999999
Q ss_pred CCcEEEEEcCCc
Q 001176 650 DNGIKILANSDG 661 (1132)
Q Consensus 650 dg~i~iw~~~~~ 661 (1132)
||.|++||+.++
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=296.80 Aligned_cols=279 Identities=9% Similarity=0.098 Sum_probs=238.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC-eE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l 420 (1132)
|.+.|++++|+|+++ +|++|+.||.|+||++.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 889999999999998 689999999999999988762110 001346999999999999999 99
Q ss_pred EEEeCCCeEEEEEe-cCCCceeeeeeeec--ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC---------CeEEE
Q 001176 421 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 488 (1132)
Q Consensus 421 as~~~dg~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---------~~~~~ 488 (1132)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87653 25778 999999999999 77 899999999999999987 77777
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCc--eEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCC
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 564 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 564 (1132)
.+. |...|.+++|+++ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 776 8999999999763 399999999999999998 443 335556778999999999 9999999975 78
Q ss_pred eEEEEeCCCC------ceeeeeccccC--------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-CCC
Q 001176 565 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGL 629 (1132)
Q Consensus 565 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 629 (1132)
.|++|+++.. +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~- 295 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED- 295 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-
Confidence 8999999887 77778877642 37999999999999999999999999999999999888765 44
Q ss_pred CCcceEEEcCCCCEEEEEeCCCc-EEEEE
Q 001176 630 PASPRLRFNKEGSLLAVTTSDNG-IKILA 657 (1132)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~-i~iw~ 657 (1132)
.|.+++ |++++|++++.||. .+.+.
T Consensus 296 -~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 -SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred -CceEec--CCCCeEEEEecCCccccccc
Confidence 788988 99999999999998 54444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-31 Score=302.55 Aligned_cols=297 Identities=13% Similarity=0.177 Sum_probs=242.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 422 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las 422 (1132)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35567899999876677789999999999966433211 1112678999999999999 9999999
Q ss_pred EeCCCeEEEEEecCCCce----eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe--cCCCCC
Q 001176 423 AFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAP 496 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--~~h~~~ 496 (1132)
|+.||+|++||+.++... .....+.+|...|.+++|+|++.. +|++|+.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 223367899999999999999843 8999999999999999999999999 889999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCe-EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
|.+++|+|+ +.+|++++.||.|++||++++.....+ ..|.+. +.+++|+|++++|+++.. +..++.|++||++++
T Consensus 179 v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSRD--GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECTT--SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECCC--CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 999999884 489999999999999999998888777 667664 899999999999888731 124889999999987
Q ss_pred ce-eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCee-EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 575 AI-KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 575 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
+. +..........+.+++|+|+++++++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce
Confidence 64 3333322333799999999999997654 799999999998874 555554444568999999999988764 567
Q ss_pred cEEEEEcCCc
Q 001176 652 GIKILANSDG 661 (1132)
Q Consensus 652 ~i~iw~~~~~ 661 (1132)
.+++|++.++
T Consensus 334 ~~~~~~l~~~ 343 (402)
T 2aq5_A 334 IARFYKLHER 343 (402)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEcCCC
Confidence 9999999876
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=296.90 Aligned_cols=296 Identities=16% Similarity=0.222 Sum_probs=244.0
Q ss_pred cCCcccceEEeec-CCCCeeEEEEccC---CCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCC
Q 001176 329 QDDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 329 ~d~~~~~~~~~l~-h~~~V~~~~~spd---g~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.+..+...+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~ 84 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQM 84 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eecc
Confidence 3446677788887 9999999999999 46 799999999999999987 433211 2567
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE--ecCCCcEEEEEEcCCCcEEEEEC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~--s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
|.+.|.+++|+|++++|++|+.||.|++||+.+++... +.+|...|.+++| +|++. +|++++.|+.|++||+
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDT 158 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECS
T ss_pred ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEEC
Confidence 99999999999999999999999999999999876443 5679999999999 88887 8999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCeEEEEEEcCCCCE----EEE
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFS 555 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~ 555 (1132)
++++.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... +++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 9999999888665 566666643 578999999999999998766544332 23445666666665544 888
Q ss_pred EecCCCCCCeEEEEeCCCC---ceeeeeccccCC-----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 001176 556 CGTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
++. ++.|++||++.. ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 234 ~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 234 GSI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp EET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred ecC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 764 888999999987 566777776642 59999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+..|.. .|.+++|+|+|++|++++.|+..+.|++.+
T Consensus 310 ~~~~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 310 TSEQLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp ECCCCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EecCCCC--CceEEEECCCCCeEEEEecccccccccccC
Confidence 8887644 899999999999999999988666555433
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-30 Score=296.79 Aligned_cols=294 Identities=18% Similarity=0.276 Sum_probs=237.9
Q ss_pred eEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCC
Q 001176 759 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 838 (1132)
Q Consensus 759 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~ 838 (1132)
+.+..|.......+..++|++++ +++.+.|++|++||.. +|.+... +....| ..
T Consensus 95 ~~l~ap~~~~d~y~~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~ 148 (420)
T 4gga_A 95 RILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GE 148 (420)
T ss_dssp EEEECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TC
T ss_pred eEEECCCCcccccceeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CC
Confidence 33444443345567789999765 4445569999999753 4443322 222236 78
Q ss_pred CeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-eeeee
Q 001176 839 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTK 916 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~ 916 (1132)
.|++++|+|||++||+|+ ||+|++||+.+++++..+.+|...+.++++++ .+|++|+.|+.+++||.... ..+..
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEE
Confidence 899999999999999999 99999999999999999999999999988854 69999999999999998864 55677
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEE-EE---eCC
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VV---HES 992 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~---~d~ 992 (1132)
+.+|...+..+.|+|+++++++++.|+.+++|+..+++.... .+.....+. ..|.+++|+|++..++ ++ .|+
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTC
T ss_pred ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCC
Confidence 899999999999999999999999999999999988764322 222233333 6789999999776444 43 489
Q ss_pred eEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCcceecccCCCccccccccCCCCCC
Q 001176 993 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069 (1132)
Q Consensus 993 ~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1132)
.|++||+ ++.+...+.. ...+.++.|+|+++.|++++ .||.|+|||+.+++.+..+. +|...
T Consensus 302 ~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-----------gH~~~ 366 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSR 366 (420)
T ss_dssp EEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSC
T ss_pred EEEEEeCCccccceeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-----------CCCCC
Confidence 9999999 6666655532 56899999999999988765 79999999999999987775 88999
Q ss_pred cEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1070 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1070 v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
|++++|+| ++.+|+||+.|++|++||+.+..
T Consensus 367 V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 367 VLSLTMSP-DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEEECT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 99999999 88999999999999999997654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=292.80 Aligned_cols=251 Identities=11% Similarity=0.092 Sum_probs=203.1
Q ss_pred CCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCe--EEEEeeCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEEccc
Q 001176 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 835 h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~-~~~~lasg~~dg~v~iwd~~~ 910 (1132)
| ...|++++|+|+|++||+|+ |++|++||+.+++ ++..+.+|.+.|.+++|+|. ++++|++|+.|++|++||+.+
T Consensus 12 H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 H-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred c-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 7 89999999999999999999 9999999998764 56789999999999999862 478999999999999999988
Q ss_pred c--eeeeeeccccCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC----
Q 001176 911 D--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---- 982 (1132)
Q Consensus 911 ~--~~~~~l~~h~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---- 982 (1132)
+ +....+.+|...|++++|+|+ +.+|++++.|++|++||+..+... .......+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeecccc---CCcceEEEccccCCc
Confidence 7 356678899999999999998 789999999999999999875321 1223344554 57889999998
Q ss_pred -------------CcEEEE-EeCCeEEEEeCC-CCceeecCCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEeC
Q 001176 983 -------------QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 983 -------------g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~i~~s~dg----~~las~~~dg~i~vwd~ 1043 (1132)
+++|++ +.|+.|++||+. ...........+|...|.+++|+|++ .+||+|+.||+|++|++
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 467777 579999999994 32222222345679999999999987 89999999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.+...... .......|...+.+++|+| ++++|++++.|++|++|+...
T Consensus 246 ~~~~~~~~-------~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTW-------SPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCC-------BCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred cCccccch-------hhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 87321000 0011236778999999999 889999999999999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-30 Score=294.84 Aligned_cols=241 Identities=17% Similarity=0.213 Sum_probs=207.1
Q ss_pred CCCcC--eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 403 DAAIS--VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 403 ~h~~~--V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 45444 44566654 56888889999999999998765432 123889999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
+.+++.+..+.+|...|.+++|++ .++++++.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 237 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWNR----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN- 237 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred CcCCeEEEEecCCCCceEEEEECC----CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-
Confidence 999999999999999999999943 7999999999999999994 4556678889999999999999999999985
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEE-EEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
++.|++||+++++.+..+..|.. .|.+++|+|++..+ ++++ .|+.|++||+.+++.+..+..+ ..|.+++
T Consensus 238 ---d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~ 310 (401)
T 4aez_A 238 ---DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLI 310 (401)
T ss_dssp ---TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEE
T ss_pred ---CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEE
Confidence 77899999999999999988877 89999999987554 4444 6999999999999999888643 3699999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTT--SDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~--~dg~i~iw~~~~~ 661 (1132)
|+|+++.+++++ .||.|++|++.++
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 999999999954 8999999998775
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-29 Score=280.58 Aligned_cols=283 Identities=18% Similarity=0.262 Sum_probs=229.1
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 850 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~ 850 (1132)
....++||+++ +++.+.|++|++||+. ++++... +....| ...|++++|+|+++
T Consensus 27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~-~~~V~~v~~~~~~~ 80 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEYISSVAWIKEGN 80 (318)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCCEEEEEECTTSS
T ss_pred cceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCeEEEEEECCCCC
Confidence 45779999987 4455679999999753 4443332 222336 88899999999999
Q ss_pred EEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEE
Q 001176 851 YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 851 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~ 928 (1132)
+|++|+ ||+|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+..++ ..+..+.+|...+..+.
T Consensus 81 ~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T 4ggc_A 81 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157 (318)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence 999999 9999999999999999999999998877765 469999999999999998875 45677889999999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-E---eCCeEEEEeCCCCce
Q 001176 929 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V---HESQISVYDSKLECS 1004 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~---~d~~v~vwd~~~~~~ 1004 (1132)
+++++++|++++.|++|++||+.+++...... .....+. ..+..++++|++..++. + .++.|++||......
T Consensus 158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCBTTBSCCS-EEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EcCCCCEEEEEecCcceeEEECCCCcccccce-eeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 99999999999999999999999876433222 1222222 56889999998765543 2 468999999944333
Q ss_pred eecCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCe
Q 001176 1005 RSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1082 (1132)
Q Consensus 1005 ~~~~~~~~h~~~i~~i~~s~dg~~las~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 1082 (1132)
.... .+...+..+.|+|++..+++++ .||.|++||+.+++.+..+. +|...|.+++|+| ++.+
T Consensus 234 ~~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-----------gH~~~V~~l~~sp-dg~~ 298 (318)
T 4ggc_A 234 LSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSRVLSLTMSP-DGAT 298 (318)
T ss_dssp EEEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECT-TSSC
T ss_pred cccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-----------CCCCCEEEEEEcC-CCCE
Confidence 3322 2367899999999999887765 79999999999999987775 8889999999999 8899
Q ss_pred EEEEeCCCcEEEEecCCCc
Q 001176 1083 IALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1083 l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
|+||+.||+|++||+.+.+
T Consensus 299 l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 299 VASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEETTTEEEEECCSCCC
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999997654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=297.91 Aligned_cols=250 Identities=13% Similarity=0.213 Sum_probs=207.7
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCc--------eeeeeeeeccc------------CCEEEEEEecCC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 462 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~v~~s~d~ 462 (1132)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999997652 22344678998 889999999998
Q ss_pred --CcEEEEEEcCCCcEEEEECCCCeEE---------------------------------------EE-ecCCCCCeEEE
Q 001176 463 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 500 (1132)
Q Consensus 463 --~~~~l~s~~~dg~v~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i 500 (1132)
. .|++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998775432 12 36799999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
+|+|+ +.+|+++ .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSD--YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTT--SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCC--CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 99885 4899998 799999999985443332 45788899999999999 89999985 788999999
Q ss_pred CCCce----eeeeccccC-----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCCCCCC----
Q 001176 572 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 631 (1132)
Q Consensus 572 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 631 (1132)
++++. +..+.++.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..|.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99886 677877764 27999999999999999998 9999999997 888888877643111
Q ss_pred ---------cceEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 632 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 632 ---------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
+..++|+|++++|++|+.||.|++||+.++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 3349999999999999999999999999883
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=287.37 Aligned_cols=253 Identities=12% Similarity=0.167 Sum_probs=217.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v 476 (1132)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |+. +|++|+.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 46789999999999999999999999999999999976432 34446789999999999999 577 89999999999
Q ss_pred EEEECCCC---------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001176 477 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 535 (1132)
Q Consensus 477 ~vwd~~~~---------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------------ 535 (1132)
++||+.++ +.+..+.+|...|.+++|+|..++.++++++.||.|++||+++......+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 668889999999999999987335899999999999999998876543222
Q ss_pred -CCCCeEEEEEEcCC---CCEEEEEecCCCCCCeEEEEeCCCCce--eeeeccccCCceEEEEEeCCC----CEEEEEEc
Q 001176 536 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 605 (1132)
Q Consensus 536 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 605 (1132)
.+...+.+++|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889999875 67788888777765 667777776 89999999998 79999999
Q ss_pred CCeEEEEECCCC----------------------------------------------eeEEEEeCCCCCCCcceEEEcC
Q 001176 606 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 606 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
||.|++||+.++ +.+..+..|. ..|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN--GEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS--SCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc--ccEEEEEEcC
Confidence 999999999865 4555555554 4899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCc
Q 001176 640 EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999987
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=291.19 Aligned_cols=234 Identities=17% Similarity=0.305 Sum_probs=210.3
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ +|++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987655 67899999999999 677 8999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 99999999999999999999853 69999999999999999987765 567788899999999 7889999975
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
++.|++||+++++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..|.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 78899999999999999998887 88888885 68999999999999999999999999987654 7899998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=281.24 Aligned_cols=254 Identities=10% Similarity=0.001 Sum_probs=213.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+|.+.|.+++|+|++++|++++.|+.|++|++.++........+.+|...|.+++|+|+++. +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988733333356689999999999999872 388999999999999
Q ss_pred C-CCCeEEEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCeEEEEEEcC
Q 001176 481 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 548 (1132)
Q Consensus 481 ~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 548 (1132)
+ .+++. ..+.+ |...|.+++|++ + .++++++.|+.|++||+++ ......+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77765 78888 999999999998 3 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCC-Cce--eeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCC------e
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------N 618 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~ 618 (1132)
++ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|++... +
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 777764 78899999998 553 223333444 899999999 9999999999999999999887 7
Q ss_pred eEEEEeCCCC-------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 619 MLTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 619 ~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
....+..+.. ...|.+++|+|++++|++++.||.|++||+.++ +....+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 289 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNF 289 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEEC
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-hHhhhh
Confidence 7777776643 347999999999999999999999999999887 444333
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=288.95 Aligned_cols=257 Identities=15% Similarity=0.210 Sum_probs=213.3
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC--ccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
.++.++. |.+.|++++|+|+|+ +|++|+.||.|+|||+..+ +.+. .+.+|.+.|.++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~ 61 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRV 61 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEE
T ss_pred CccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEE
Confidence 3455666 999999999999998 6999999999999999743 2222 266899999999
Q ss_pred EEcCC--CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--
Q 001176 412 VWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR-- 485 (1132)
Q Consensus 412 ~~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~-- 485 (1132)
+|+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++.
T Consensus 62 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 62 DWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCC
T ss_pred EeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCce
Confidence 99987 99999999999999999998752 223357789999999999999 88 89999999999999998873
Q ss_pred EEEEecCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCeEEEEEEcCC-
Q 001176 486 KQYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD- 549 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~- 549 (1132)
....+.+|...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+
T Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence 445677899999999999842 4589999999999999999876643 466778899999999999
Q ss_pred --CCEEEEEecCCCCCCeEEEEeCCCCc---eeee--eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 550 --GTRLFSCGTSKEGESHLVEWNESEGA---IKRT--YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 550 --~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
+++|++++. ++.|++||+.++. .... ...+.. .+.+++|+|++++|++++.||.|++|++.....
T Consensus 219 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 219 LLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 899999875 7889999999864 1122 222444 799999999999999999999999999885443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=287.97 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=218.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~v 478 (1132)
+.+|.+.|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ +. +|++|+.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 67899999999999999999999999999999998532 2233467899999999999987 77 8999999999999
Q ss_pred EECCCCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcC------
Q 001176 479 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 548 (1132)
Q Consensus 479 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~------ 548 (1132)
||+.+++ .+..+.+|...|.+++|+|..++.++++++.|+.|++||++... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999987435899999999999999998874 3446678888999999999
Q ss_pred -------CCCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCC---CCEEEEEEcCCeEEEEEC
Q 001176 549 -------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 549 -------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~ 614 (1132)
+++++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ +.+|++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999975 7789999998764 4456777776 8999999999 899999999999999999
Q ss_pred CCCe---eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 615 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 615 ~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++. ....+....+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8864 3333333334558999999999999999999999999999765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=284.14 Aligned_cols=259 Identities=11% Similarity=0.151 Sum_probs=217.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 419 (1132)
|.+.|++++|+|+++ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+++
T Consensus 10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCSE
T ss_pred cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCCE
Confidence 999999999999998 699999999999999987643211 0112567999999999999 6999
Q ss_pred EEEEeCCCeEEEEEecCCCc------eeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 420 LGVAFSKHIVHLYTYNPTGE------LRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~------~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
|++|+.||.|++||+.++.. ......+.+|...|.+++|+|+ +. ++++++.||.|++||+.+++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999988642 1334467889999999999999 88 89999999999999999887544332
Q ss_pred -------------CCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCC----C
Q 001176 492 -------------GHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG----T 551 (1132)
Q Consensus 492 -------------~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~ 551 (1132)
+|...+.+++|+|.. ++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 688899999998861 248999999999998888777665 45677788999999999998 7
Q ss_pred EEEEEecCCCCCCeEEEEeCCCC----------------------------------------------ceeeeeccccC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFRK 585 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~~ 585 (1132)
+|++++. |+.|++||++++ +.+..+.+|..
T Consensus 232 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 232 LIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp EEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred EEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 8998875 788999999875 56677778777
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 001176 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1132)
.|.+++|+|++++|++++.||.|++|++.+++....+
T Consensus 308 -~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 308 -EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp -CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred -cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 8999999999999999999999999999987655544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=281.29 Aligned_cols=298 Identities=12% Similarity=0.151 Sum_probs=236.7
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEcCC-CCce-EEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDY-LGSR-VDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|+....+.+..+.+|...|++++|+|+. +|.+|++++.||.|++||+.+ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 4556667778889999999999998862 258999999999999999997 4343 577789999999999999999999
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEE--eCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF--DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++. ++.|++||+.+++.+. +..|.. .|.+++| ++++.++++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQ-IAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEE-EEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCcee-eccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 975 7889999999988766 445555 8999999 8999999999999999999999999988887653 345
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCC
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 713 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 713 (1132)
++.+. +..+++++.++.+.+|++.............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------------------------------ 210 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP------------------------------------------ 210 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc------------------------------------------
Confidence 55554 5588889999999999987552211111000
Q ss_pred CCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccccee
Q 001176 714 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 793 (1132)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 793 (1132)
T Consensus 211 -------------------------------------------------------------------------------- 210 (368)
T 3mmy_A 211 -------------------------------------------------------------------------------- 210 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE----EEEee-CCeEEEEECCCC
Q 001176 794 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF 868 (1132)
Q Consensus 794 ~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~----la~~s-dg~i~vwd~~~~ 868 (1132)
+ ...+.++++.++... +++++ ||.|++||+...
T Consensus 211 -----------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 211 -----------------------------------------L-KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -----------------------------------------C-SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -----------------------------------------c-cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 0 122333333333332 66666 788888888776
Q ss_pred ---eEEEEeeCCCC------------CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC
Q 001176 869 ---KVMTMFMSPPP------------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 933 (1132)
Q Consensus 869 ---~~~~~~~~~~~------------~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 933 (1132)
+....+.+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 55666776665 799999999 89999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCcEEEEECCC
Q 001176 934 NALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 934 ~~l~s~~~D~~i~iwd~~~ 952 (1132)
++|++++.|+..+.|++-.
T Consensus 328 ~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEecccccccccccC
Confidence 9999999998666555443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=288.88 Aligned_cols=249 Identities=16% Similarity=0.224 Sum_probs=209.3
Q ss_pred cCeEEEEEcCCCCeEE-EEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECC
Q 001176 406 ISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 406 ~~V~~v~~spdg~~la-s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|.+++|+| ++. +|++|+.||.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876544 5788999999999664322 23335778999999999999 787 89999999999999999
Q ss_pred CC-------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCeEEEEEEcCCCCEE
Q 001176 483 AG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 483 ~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 553 (1132)
++ +.+..+.+|...|.+++|+|++. .+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 66889999999999999988642 69999999999999999999888888 7899999999999999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeee-ccccCCceEEEEEeCCCCEEEEE---EcCCeEEEEECCCCee-EEEEeCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGG 628 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1132)
++++. ++.|++||+++++.+..+ .+|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 99975 788999999999999988 67776458999999999999988 6899999999998664 333332 22
Q ss_pred CCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCcc
Q 001176 629 LPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGV 662 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~ 662 (1132)
...+.+++|+|++++|+++ +.||.|++|++.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 3468999999999999754 479999999998773
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=285.04 Aligned_cols=302 Identities=11% Similarity=0.048 Sum_probs=234.5
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccc-------------------------------
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA------------------------------- 392 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------------------- 392 (1132)
.++.+++|+|||+ +|+++ .++.|++||+.+|+... .+..|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWE--FAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEE--EEEEEECCC--------------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcce--eeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 4789999999999 56655 47899999999988211 1112221100
Q ss_pred ---------cccccccccCCCCcCeEEEEEcCCCCeE-EEEeCCCeEEEEEec--CCCceeeeeeeecccCCEEEEEEec
Q 001176 393 ---------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAH 460 (1132)
Q Consensus 393 ---------~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~~s~ 460 (1132)
..........+|.+.|.+++|+|+|++| ++|+.||.|++||+. +++.+.... ...|...|.+++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAE 159 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcC
Confidence 0000111123577789999999999996 899999999999999 777665322 135778999999999
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeEEE----EecCCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEcCCCCceEE-e
Q 001176 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y 534 (1132)
Q Consensus 461 d~~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~ 534 (1132)
+++ +|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ ..+.+|++++.|+.|++||++++..... +
T Consensus 160 ~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 160 DDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp TSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred CCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 999 89999999999999998877554 77889999999999986 2248999999999999999998887776 5
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc------------------------CCceEE
Q 001176 535 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRSLGV 590 (1132)
Q Consensus 535 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~v~~ 590 (1132)
.+|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...+..
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred cCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 5888999999999 9999999985 7889999999999888876321 236889
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEEC--CCC---eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEc
Q 001176 591 VQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILAN 658 (1132)
Q Consensus 591 ~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~ 658 (1132)
++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+|.+
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 99999999999998 8999999999 555 666777765 37899999996533333332 455888876
Q ss_pred CC
Q 001176 659 SD 660 (1132)
Q Consensus 659 ~~ 660 (1132)
..
T Consensus 390 ~~ 391 (450)
T 2vdu_B 390 NL 391 (450)
T ss_dssp ET
T ss_pred Ec
Confidence 54
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-27 Score=250.87 Aligned_cols=294 Identities=16% Similarity=0.159 Sum_probs=210.2
Q ss_pred CEEEEEEe-cCCCcEEEEEEcCCCcEEEEECCCC---eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 452 GVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 452 ~v~~v~~s-~d~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
.+.++.|- +..+.+.+++++ ...|++|+..++ +.++++.+|+.+|..+.+.|+..+-..++-
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------- 106 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL------------- 106 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-------------
Confidence 35566664 344555677777 569999999999 899999999999999999886542222211
Q ss_pred CCceEEecCCCCeEEEEEEcCC----CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE
Q 001176 528 LGSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1132)
-..+...|.+++++|| ++++++++. .+.+|++.+ ++.+.++
T Consensus 107 ------~~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~-----------------------g~lv~ss 151 (356)
T 2w18_A 107 ------GNLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTK-----------------------RRLVSSS 151 (356)
T ss_dssp ------CSSSEEEEEEECC------CCEEEEEEEE------EEEEEEETT-----------------------TEEEEEE
T ss_pred ------ccccccceEEEEECCCccccccEEEeCCC------eEEEEecCC-----------------------CcEEEec
Confidence 1234567899999999 899998763 266675433 3333332
Q ss_pred E--cCCeEEEEEC-CCCeeEEEEeCCCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcCCcceeeeecccccccccc
Q 001176 604 G--DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 677 (1132)
Q Consensus 604 ~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1132)
+ .|+.|++|++ .+++.+..+..|.. .+..++|++ ++.+|++++.|++|++||+.++ ++.+.+.+|..
T Consensus 152 ~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~---- 224 (356)
T 2w18_A 152 GTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS---- 224 (356)
T ss_dssp SSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-----
T ss_pred ccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc----
Confidence 2 4777777777 34666667766655 788899999 7899999999999999999999 66666654321
Q ss_pred CCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCc
Q 001176 678 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 757 (1132)
Q Consensus 678 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 757 (1132)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCC
Q 001176 758 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 837 (1132)
Q Consensus 758 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~ 837 (1132)
+...+.+++|+|+|..+++++.+..
T Consensus 225 ----------~v~~v~~vafSpdG~~lvs~s~~~~--------------------------------------------- 249 (356)
T 2w18_A 225 ----------YQASVCHKAYSEMGLLFIVLSHPCA--------------------------------------------- 249 (356)
T ss_dssp ------------CCCEEEEEEETTEEEEEEC-------------------------------------------------
T ss_pred ----------ceeeeEEEEECCCCCEEEEeccCCC---------------------------------------------
Confidence 1234678899999988777654311
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEe-----eCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.++
T Consensus 250 -----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 250 -----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp -------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTC
T ss_pred -----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCC
Confidence 11466777 899999999999988765 366666554444 3679999999999999999999
Q ss_pred eeeeeeccccCCee-EEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 912 EVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~-~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
+++.++.+|.+.+. +++|||||++|+||+.|++|++||+
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999988765 5899999999999999999999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-27 Score=270.05 Aligned_cols=278 Identities=10% Similarity=0.075 Sum_probs=227.1
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE-EEEeCCCeEEEEEec
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 435 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~ 435 (1132)
+++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999876542 3334 458999999999987 667789999999999
Q ss_pred CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-EEE
Q 001176 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 514 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~ 514 (1132)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++ ..+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 887654 344343 8999999999994 3456777899999999999998888754 468999998764 555 788
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 594 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1132)
+.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988777766654 45689999999998865442 47889999999998887776533 68899999
Q ss_pred CCCCEEEEEE---cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 595 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999987 68999999999999988887653 47899999999987 56678999999999998 66666655
Q ss_pred cc
Q 001176 671 RA 672 (1132)
Q Consensus 671 ~~ 672 (1132)
+.
T Consensus 285 ~~ 286 (391)
T 1l0q_A 285 GK 286 (391)
T ss_dssp SS
T ss_pred Cc
Confidence 44
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=278.41 Aligned_cols=317 Identities=12% Similarity=0.155 Sum_probs=246.6
Q ss_pred CCeEEEEEecC--CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-----EecCCCCCeE
Q 001176 426 KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVY 498 (1132)
Q Consensus 426 dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~h~~~v~ 498 (1132)
++.+.+|.++. +. ......+..+ ..+.+++|+|++. ++++++.|+.|++||+.+++.+. .+.+|...|.
T Consensus 98 ~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 98 ELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp GGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 34335555433 32 2233344444 4566999999665 78888899999999999999887 4557999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+++|+++ +.++++++.|+.|++||+++.+....+..+...+.+++|+|+++++++++. .++.|++||+++++.+.
T Consensus 174 ~~~~~~~--~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 174 TISIPEH--NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIR 248 (433)
T ss_dssp EEEEGGG--TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEE
T ss_pred EEEEcCC--CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEE
Confidence 9999764 489999999999999999998888888888889999999999999876652 37789999999999888
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE--------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EEEeC
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTS 649 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~ 649 (1132)
.+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.+..+.... .+.+++|+|+++.+ ++++.
T Consensus 249 ~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 249 KTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETT
T ss_pred EecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecC
Confidence 877644 589999999999999987 48899999999998877764322 57899999999755 56688
Q ss_pred CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccc
Q 001176 650 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 729 (1132)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1132)
++.|++||+.++ +....+.
T Consensus 324 ~~~v~v~d~~~~-~~~~~~~------------------------------------------------------------ 342 (433)
T 3bws_A 324 CSKIEVYDLKEK-KVQKSIP------------------------------------------------------------ 342 (433)
T ss_dssp TTEEEEEETTTT-EEEEEEE------------------------------------------------------------
T ss_pred CCEEEEEECCCC-cEEEEec------------------------------------------------------------
Confidence 999999999876 3222211
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 809 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 809 (1132)
+...+.+++|+|+|+.+++++.+..
T Consensus 343 --------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~----------------- 367 (433)
T 3bws_A 343 --------------------------------------VFDKPNTIALSPDGKYLYVSCRGPN----------------- 367 (433)
T ss_dssp --------------------------------------CSSSEEEEEECTTSSEEEEEECCCC-----------------
T ss_pred --------------------------------------CCCCCCeEEEcCCCCEEEEEecCCC-----------------
Confidence 2234678899999988877664410
Q ss_pred ccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeC
Q 001176 810 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 888 (1132)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 888 (1132)
.+ +..++++++ ||.|++||+.+++.+..+.. ...+.+++|+|
T Consensus 368 -----------------------------~~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~ 410 (433)
T 3bws_A 368 -----------------------------HP-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP 410 (433)
T ss_dssp -----------------------------CT-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT
T ss_pred -----------------------------cc-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC
Confidence 00 223445566 89999999999999888886 45799999999
Q ss_pred CCCCeEEEEeC-CCcEEEEEccc
Q 001176 889 QDNNIIAIGME-DSSVQIYNVRV 910 (1132)
Q Consensus 889 ~~~~~lasg~~-dg~v~iwd~~~ 910 (1132)
++++|++++. |+.|++|++..
T Consensus 411 -dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 -DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -TSCEEEEEETTTTEEEEEEETT
T ss_pred -CCCEEEEEECCCCeEEEEEecC
Confidence 8888887775 99999999863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=275.34 Aligned_cols=283 Identities=13% Similarity=0.138 Sum_probs=216.1
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
.++.++. |.+.|++++|||||+ +||+|+.++ ++||++.+++.... .+...+..+++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~ 66 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRM 66 (355)
T ss_dssp ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEE
T ss_pred CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEE
Confidence 3444555 899999999999998 688888664 78999987765432 12225888999
Q ss_pred cCCCCeE-EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEec
Q 001176 414 GPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 491 (1132)
Q Consensus 414 spdg~~l-as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~ 491 (1132)
+++++.+ ++++.|++|++||..+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+.
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEec
Confidence 9998887 457778999999999987665 343 67799999998764 33333 789999999988 6666655
Q ss_pred CCCCCeEEEEeeccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCeEEEEEEcCCCCEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
. +...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|
T Consensus 138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 4 344455555 34554 6899999999998765 256788999999999999999999
Q ss_pred EEEecCCCCCCe-EEEEeCCCCceeeeec-c-ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE--EEE-----
Q 001176 554 FSCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TTV----- 623 (1132)
Q Consensus 554 ~~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~----- 623 (1132)
++++. |++ |++||+++++++..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+... ..+
T Consensus 211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EEEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EEEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99985 887 9999999999999998 5 555 8999999999999999999999999999765311 110
Q ss_pred -------------eCC-CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 624 -------------DAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 624 -------------~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
... ........++|+++++.|++++.||.+++|++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 001 11123477999999999999999999999998765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=276.95 Aligned_cols=304 Identities=8% Similarity=0.049 Sum_probs=246.0
Q ss_pred ceeccCCc--ccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccC
Q 001176 325 NVYSQDDL--TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 402 (1132)
Q Consensus 325 ~~~~~d~~--~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1132)
.++..+.. ..+.+..+.....+.+++|+|+++ ++++++.++.|++||+.+++..... ....+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~--------------~~~~~~ 166 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLS--------------PPEKYK 166 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEEC--------------CCHHHH
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeec--------------Cccccc
Confidence 44444442 235667777667788999999654 8899999999999999988765321 111245
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
+|.+.|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRK 242 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECC
Confidence 799999999999999999999999999999999887655 46678899999999999984 34667789999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEe--------cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+++.+..+..+ ..+.+++|+|++ ..+++++ .|+.|++||+.+++....+ .+...+.+++|+|+++.++
T Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 243 TKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIY 318 (433)
T ss_dssp TTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEE
T ss_pred CCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEE
Confidence 99998888754 458999998754 7888887 5889999999877655544 3445788999999998776
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCee
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMNM 619 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~ 619 (1132)
+.+. .++.|++||+.+++.+..+.. .. .+.+++|+|+++++++++. ||.|++||+.+++.
T Consensus 319 ~~~~---~~~~v~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 319 VSDM---CCSKIEVYDLKEKKVQKSIPV-FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEET---TTTEEEEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEec---CCCEEEEEECCCCcEEEEecC-CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 6542 478899999999988887763 33 6889999999999988875 57999999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 659 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 659 (1132)
+..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 394 ~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 394 KEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9888763 26899999999999998875 9999999975
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=269.55 Aligned_cols=314 Identities=8% Similarity=0.083 Sum_probs=213.9
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EE
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AV 646 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 646 (1132)
+|++.+.+.+.....|.. .|.+++|+|+|++|++|+.++ +++|+..+++.......+ .+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEE
Confidence 456666777777777766 899999999999999887664 789999988777665433 47788999988877 45
Q ss_pred EeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCC
Q 001176 647 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 726 (1132)
Q Consensus 647 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1132)
++.|++|++||..++ +....+.
T Consensus 77 ~~~d~~v~iWd~~~~-~~~~~~~--------------------------------------------------------- 98 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKK-QDVSRIK--------------------------------------------------------- 98 (355)
T ss_dssp CSSTTEEEEEETTTT-EEEEEEE---------------------------------------------------------
T ss_pred ECCccEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence 777899999999887 3332221
Q ss_pred cccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCC
Q 001176 727 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 806 (1132)
Q Consensus 727 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 806 (1132)
+...|.++.++++. +++ +.++.+++||+....
T Consensus 99 -----------------------------------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---- 130 (355)
T 3vu4_A 99 -----------------------------------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---- 130 (355)
T ss_dssp -----------------------------------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC----
T ss_pred -----------------------------------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc----
Confidence 22357788888765 232 347889999875320
Q ss_pred CccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe--e-CCeEEEEECCCCe--------------
Q 001176 807 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--S-GGKVSLFNMMTFK-------------- 869 (1132)
Q Consensus 807 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~--s-dg~i~vwd~~~~~-------------- 869 (1132)
+.+.. + ......+++++ .+++++ + +|.|++||+.+++
T Consensus 131 -----------------~~~~~-~------~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 131 -----------------KRITD-D------IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp -----------------CBSSC-C------EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred -----------------eeeEE-e------ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 11110 0 11334566777 677764 4 8999999999865
Q ss_pred --EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCc-EEEEEcccceeeeeec-c-ccCCeeEEEEcCCCCEEEEEcCCCc
Q 001176 870 --VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS-VQIYNVRVDEVKTKLK-G-HQNRITGLAFSPTLNALVSSGADAQ 944 (1132)
Q Consensus 870 --~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~-v~iwd~~~~~~~~~l~-~-h~~~V~~l~~spdg~~l~s~~~D~~ 944 (1132)
.+..+.+|.+.|++++|+| ++++||+|+.||+ |+|||+.+++++..+. + |.+.|++++|+|++++|++++.|++
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp --CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred CcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 2688999999999999999 9999999999998 9999999999999998 5 9999999999999999999999999
Q ss_pred EEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEcc
Q 001176 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1024 (1132)
Q Consensus 945 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~ 1024 (1132)
|++||+..+.......+.. + +.|. ++ .. .|.. ..+.....+..+...++|++
T Consensus 264 v~iw~~~~~~~~~~~~~~~----------~----~~~~--~~--~~-----~~~~-----~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKG----------W----INMK--YF--QS-----EWSL-----CNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp EEEEESSCCSCCCSEETTT----------T----EECC--CC--CC-----SSCS-----EEEECCCCTTCCCCEEEESS
T ss_pred EEEEEccCCCCcccccccc----------e----eecc--cc--cc-----ccce-----eEEEeccCCCCCceEEEEeC
Confidence 9999998754222111110 0 0000 00 00 0110 00001111234457799999
Q ss_pred CCCEEEEEecCCcEEEEeCCCcce
Q 001176 1025 DGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 1025 dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
||++|++++.||.+++|++..+..
T Consensus 316 d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999999999999999999886553
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=266.06 Aligned_cols=328 Identities=11% Similarity=0.116 Sum_probs=255.8
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78999999999999999999999988775 48999998755 555 777799999999999888777776555 89999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCCCeeEEEE
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 623 (1132)
+|+|++++|++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877653 36889999999999888887654 58899999999987 56778999999999999998888
Q ss_pred eCCCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccccc
Q 001176 624 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 702 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 702 (1132)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~--------------------------------- 197 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK--------------------------------- 197 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence 7653 46899999999887 56677899999998765 1111000
Q ss_pred ccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCc
Q 001176 703 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 782 (1132)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 782 (1132)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee----CC
Q 001176 783 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG 858 (1132)
Q Consensus 783 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s----dg 858 (1132)
+ ...+.+++|+|+|+++++++ ++
T Consensus 198 ----------------------------------------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 198 ----------------------------------------------------V-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp ----------------------------------------------------C-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ----------------------------------------------------c-CCCccceEECCCCCEEEEEecCcCCC
Confidence 1 33456778888888777764 58
Q ss_pred eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeE-EEEeCCCcEEEEEcccceeeeeeccccCCee---EEEEcCCC-
Q 001176 859 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLAFSPTL- 933 (1132)
Q Consensus 859 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg- 933 (1132)
.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQP 302 (391)
T ss_dssp EEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCC
T ss_pred cEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccc
Confidence 89999999999888888764 578999999 77766 6778899999999999999888877655421 12322211
Q ss_pred ---------------------CEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 934 ---------------------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 934 ---------------------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
..+...+.|..+++|++..+.... .......|+++|.+.+.
T Consensus 303 ~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 303 VYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC--------------SSSCEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC--------------cCCCeEEeCCCceEEEE
Confidence 235566678899999998765211 11134678999988776
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=280.94 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=216.2
Q ss_pred eEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 336 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 336 ~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
....+.|.+.|++++|+|++..++|+|+.||.|+||++.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 35556699999999999985558999999999999999863111000 000001112568999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eEE
Q 001176 416 DGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 487 (1132)
Q Consensus 416 dg~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~~~ 487 (1132)
+++ +|++|+.||.|++|++.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999988433 2223456789999999999995444 8999999999999999987 577
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCe
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESH 565 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 565 (1132)
..+..|...|++++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++ +|++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 88889999999999998653 4899999999999999998 455678888999999999999996 5777764 788
Q ss_pred EEEEeCCC--------------CceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 001176 566 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 566 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1132)
|++||+.. .+.+..+.+|.. .|.+++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356677777776 899999999998 8899999999999998753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=308.93 Aligned_cols=255 Identities=15% Similarity=0.191 Sum_probs=211.8
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
.++. |.+.|++++|+|+|+ ++++|+.||.|+|||+.++..... ..+.+|.+.|.+++|+|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAHP 64 (753)
T ss_dssp -----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECCT
T ss_pred eecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecCC
Confidence 3455 999999999999998 699999999999999984322110 126789999999999998
Q ss_pred --CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--EEEEe
Q 001176 417 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTF 490 (1132)
Q Consensus 417 --g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~ 490 (1132)
+++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. .+++|+.||.|++||+.++. ....+
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 99999999999999999998752 233367789999999999999 88 89999999999999998873 44567
Q ss_pred cCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCC---CCE
Q 001176 491 EGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSAD---GTR 552 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~---~~~ 552 (1132)
.+|...|.+++|+|.. ++.++++|+.||.|++||+++... ...+..|...|++++|+|+ +++
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence 7899999999998842 458999999999999999988743 3467788999999999999 899
Q ss_pred EEEEecCCCCCCeEEEEeCCCCc-----eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 553 LFSCGTSKEGESHLVEWNESEGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+++++. ++.|++||+.++. .......+.. .|.+++|+|+++++++++.||.|++|++..+.
T Consensus 222 l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 222 LASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999975 7889999998864 2223333444 79999999999999999999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=276.47 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=213.1
Q ss_pred cCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCC-------CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC
Q 001176 401 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 472 (1132)
..+|.+.|++++|+|+ +.+||+++.||.|++|++.+. ........+.+|...|.+++|+|++.. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence 4579999999999997 789999999999999999862 112233467899999999999999886 7999999
Q ss_pred CCcEEEEECCCCeE-------EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCeEE
Q 001176 473 DKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCT 542 (1132)
Q Consensus 473 dg~v~vwd~~~~~~-------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~ 542 (1132)
||.|++||+.++.. ...+.+|...|.+++|+|.. +.++++++.||.|++||+++. .....+..|...|+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999987432 45677899999999999853 379999999999999999987 45667778899999
Q ss_pred EEEEcCCCC-EEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC---
Q 001176 543 MMAYSADGT-RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN--- 616 (1132)
Q Consensus 543 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 616 (1132)
+++|+|++. ++++++. ++.|++||+++ +..+..+..|.. .|.+++|+|+++ ++++++.|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 999999998 5667764 78899999997 567788888876 899999999995 688899999999999987
Q ss_pred -----------CeeEEEEeCCCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCc
Q 001176 617 -----------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 617 -----------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+.+..+..| ...|.+++|+|++. +|++++.||.|++|++.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2455555555 34799999999999 9999999999999998765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=299.66 Aligned_cols=253 Identities=18% Similarity=0.262 Sum_probs=215.9
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~v 478 (1132)
+.+|.+.|++++|+|+|++|++|+.||.|++||+.++. ......+.+|.++|++++|+|+ +. +|++|+.||.|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 67899999999999999999999999999999998543 2334468899999999999988 77 8999999999999
Q ss_pred EECCCCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcC------
Q 001176 479 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 548 (1132)
Q Consensus 479 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~------ 548 (1132)
||+.+++ .+..+.+|...|.+++|+|+.++.++++|+.||.|++||++... ....+..|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 67888899999999999987445899999999999999998873 3456678889999999999
Q ss_pred -------CCCEEEEEecCCCCCCeEEEEeCCCC----ceeeeeccccCCceEEEEEeCC---CCEEEEEEcCCeEEEEEC
Q 001176 549 -------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 549 -------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~ 614 (1132)
+++++++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ +.++++++.||.|++||+
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 5899999975 788999999877 55667778777 8999999999 899999999999999999
Q ss_pred CCCeeE---EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 615 DNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 615 ~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 886421 11222234457999999999999999999999999999865
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=268.27 Aligned_cols=280 Identities=10% Similarity=0.049 Sum_probs=216.9
Q ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001176 457 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 536 (1132)
Q Consensus 457 ~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 536 (1132)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445666 89999999999999999999888876 466777777764 99999999999998642
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 614 (1132)
.+.+||..+++.+..+...+...|.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 2778898888877776633334899999999 9999999999999999999
Q ss_pred CCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccC
Q 001176 615 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 694 (1132)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 694 (1132)
.+++.+.....+. ...+.+++|+|++.+|++|+.||.|++||+.++......+..
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~------------------------ 211 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV------------------------ 211 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec------------------------
Confidence 9999876664432 236999999999999999999999999998766211011000
Q ss_pred CCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEE
Q 001176 695 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 774 (1132)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 774 (1132)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEE
Q 001176 775 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 854 (1132)
Q Consensus 775 ~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~ 854 (1132)
.| ...|++++|+|+|.+|++
T Consensus 212 -----------------------------------------------------------~h-~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 212 -----------------------------------------------------------DE-EAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp -----------------------------------------------------------CT-TSCEEEEEECTTSSEEEE
T ss_pred -----------------------------------------------------------cC-CCCEEEEEEeCCCCEEEE
Confidence 14 667888888888888888
Q ss_pred eeCCeEEEEECCCCeEEEEeeC---CCCCe--EEEEEeCCCCCeEEEEeC-CCcEEEEEcccceeeeeeccccCCeeEEE
Q 001176 855 ASGGKVSLFNMMTFKVMTMFMS---PPPAA--TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 855 ~sdg~i~vwd~~~~~~~~~~~~---~~~~i--~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 928 (1132)
+++++|++||+.+++....+.. |...+ .+++|+| ++++|++++. |+.|+||++.+....... .++..++
T Consensus 232 ~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~ 306 (343)
T 3lrv_A 232 ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALC 306 (343)
T ss_dssp EESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECC
T ss_pred EeCCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEe
Confidence 8877899999888776555443 33344 3699999 8999999998 999999999765433332 5677888
Q ss_pred EcC---CCCEEEEEcCCCcEEEEECCC
Q 001176 929 FSP---TLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 929 ~sp---dg~~l~s~~~D~~i~iwd~~~ 952 (1132)
|++ +.+.+++++.|+.+.++-...
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEEECS
T ss_pred cCccccccceeEEEecCCceEEEEecC
Confidence 988 889999999999999886543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=270.15 Aligned_cols=242 Identities=13% Similarity=0.087 Sum_probs=204.3
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeee--------------------------------------
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-------------------------------------- 447 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-------------------------------------- 447 (1132)
.++.+++|+|||++|+++ .++.|++||+.+++.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999976665 57899999999988222111222
Q ss_pred ----------------cccCCEEEEEEecCCCcEE-EEEEcCCCcEEEEECC--CCeEEEEec--CCCCCeEEEEeeccC
Q 001176 448 ----------------AHVGGVNDIAFAHPNKQLC-IVTCGDDKMIKVWDVV--AGRKQYTFE--GHEAPVYSVCPHHKE 506 (1132)
Q Consensus 448 ----------------~h~~~v~~v~~s~d~~~~~-l~s~~~dg~v~vwd~~--~~~~~~~~~--~h~~~v~~i~~~~~~ 506 (1132)
+|.+.|++++|+|+++ + +++|+.||.|++||+. +++.+..+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 3445799999999999 5 4899999999999999 888888876 577899999998854
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceE----EecCCCCeEEEEEEcCC---CCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 507 SIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 507 ~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
.+|++++.||.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 162 --~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 162 --TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp --SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred --CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 899999999999999998776543 66778899999999999 999999975 77899999999998887
Q ss_pred -eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-----------------------CCCCCcceE
Q 001176 580 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----------------------GGLPASPRL 635 (1132)
Q Consensus 580 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~ 635 (1132)
+.+|.. .|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....|.++
T Consensus 236 ~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 236 WLFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp ECCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 446665 89999999 9999999999999999999999988887632 112368899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEc
Q 001176 636 RFNKEGSLLAVTT-SDNGIKILAN 658 (1132)
Q Consensus 636 ~~s~~~~~l~~~~-~dg~i~iw~~ 658 (1132)
+|+|++++|++++ .++.|++|++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999999 8999999998
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=272.32 Aligned_cols=303 Identities=14% Similarity=0.104 Sum_probs=201.9
Q ss_pred CCeeEEEE---ccCCCeEEEEEcCCCcEEEEecCCCccccc-----cceeeeecccccc-----cccccccCCCCcCeEE
Q 001176 344 SNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAH-----KPFKVWDISAASM-----PLQNALLNDAAISVNR 410 (1132)
Q Consensus 344 ~~V~~~~~---spdg~~lla~g~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~ 410 (1132)
....++.| +|++..++++|. |+.|.+|+......... ..+..|....... +........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 45666777 455555676664 78899998753322111 1111121111000 0011112345555556
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCcee--eeeeeecccCCEEEEEEec--------CCCcEEEEEEcCCCcEEEEE
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~--------d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+++++.+||+|+.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 6667788899999999999999999876543 2335779999999999998 777 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-------------------------ec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------YD 535 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------------------------~~ 535 (1132)
+.++.++..+.+|..+|.+++|+|.+ ..+|++++.|++|++||++++..... ..
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 99999888888999999999999864 25899999999999999987654322 13
Q ss_pred CCCCeEEEEEEc-CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEE------------------EEEeC-
Q 001176 536 APGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------------------VQFDT- 595 (1132)
Q Consensus 536 ~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~~~- 595 (1132)
.+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 455677888886 89999999875 78899999988776655544432 2222 22333
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 596 TRN-RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 596 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+. ++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233 456677899999999999988887776644 899999999999999998775 556654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=267.44 Aligned_cols=268 Identities=8% Similarity=0.049 Sum_probs=212.7
Q ss_pred EEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeE
Q 001176 350 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429 (1132)
Q Consensus 350 ~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i 429 (1132)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.++.|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456776 799999999999999999876543 11 346778888888 9999999999
Q ss_pred EEEEec---------CCCceeeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeEEEEecC-CCCCe
Q 001176 430 HLYTYN---------PTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAPV 497 (1132)
Q Consensus 430 ~iwd~~---------~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v 497 (1132)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++|+.||+|++||+++++.+..+.. |...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999766 3332221 1226778999999999 998 899999999999999999998776644 55689
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
.+++|+|+ +.+|++|+.||.|++||++++... ..+.. |...|.+++|+|++.+|++++. +.|++||+++++
T Consensus 174 ~~~~~~pd--g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKD--SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTT--SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTSST
T ss_pred EEEEECCC--CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCCCC
Confidence 99999885 489999999999999999998887 67777 8999999999999999999972 379999999988
Q ss_pred eeeeecc---ccCCce--EEEEEeCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC---CCCEEEE
Q 001176 576 IKRTYSG---FRKRSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 646 (1132)
Q Consensus 576 ~~~~~~~---~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~ 646 (1132)
.+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++.+....... .++..++|.+ ++..+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7666554 222 23 36999999999999988 999999999765443332 2566788888 8889999
Q ss_pred EeCCCcEEEEEcCC
Q 001176 647 TTSDNGIKILANSD 660 (1132)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (1132)
++.||.+.++-...
T Consensus 320 ~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 320 VCGDGGIAAILKTN 333 (343)
T ss_dssp EEETTEEEEEEECS
T ss_pred EecCCceEEEEecC
Confidence 99999999886443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=243.53 Aligned_cols=296 Identities=15% Similarity=0.090 Sum_probs=202.0
Q ss_pred cceEEeecCCC-----CeeEEEEcc-CCCe-EEEEEcCCCcEEEEecCCC---ccccccceeeeecccccccccccccCC
Q 001176 334 KTVVRTLNQGS-----NVMSMDFHP-QQQT-ILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 334 ~~~~~~l~h~~-----~V~~~~~sp-dg~~-lla~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.+.+..|+... .+.++-|-. ..+. .+++++ ...|++|+..++ +.+++ +..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~-------------------~~~ 84 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYT-------------------WHF 84 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEE-------------------EEC
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEE-------------------Eec
Confidence 45566666333 355555544 3333 344444 689999999988 44432 455
Q ss_pred CCcCeEEEEEcCCCCe-EEEEeCCC-eEEEEEecC--C-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEc--CCCcE
Q 001176 404 AAISVNRCVWGPDGLM-LGVAFSKH-IVHLYTYNP--T-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMI 476 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~-las~~~dg-~i~iwd~~~--~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~dg~v 476 (1132)
|+.+|..+.++||..- +.++-.+= .-.++.+.- . +...+...-.+|...|..+ ++++ ++.+++ .|+.|
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V 159 (356)
T 2w18_A 85 AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQV 159 (356)
T ss_dssp CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEE
T ss_pred cCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcE
Confidence 7777777777775432 22221111 111111111 0 0111111123444445444 5555 555543 69999
Q ss_pred EEEEC-CCCeEEEEecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---eEEEEEEcCCCC
Q 001176 477 KVWDV-VAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGT 551 (1132)
Q Consensus 477 ~vwd~-~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~ 551 (1132)
++|++ .+|+.+..+.+|...+..++|++ .+++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|+
T Consensus 160 ~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~ 239 (356)
T 2w18_A 160 EVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL 239 (356)
T ss_dssp EEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred EEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence 99999 55888888889999999999998 67779999999999999999999999888876543 677889999999
Q ss_pred EEEEEec--------CCCCCCeEEEEeCCCCceeeee-----ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 552 RLFSCGT--------SKEGESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 552 ~l~~~~~--------~~~~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
++++++. ++..+++|++||..+++.+..+ .+|.. .+.+..++ +..+++++.|++|+|||+.+++
T Consensus 240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEEE--TTEEEEEETTSCEEEEETTTCS
T ss_pred EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccccC--CCEEEEEcCCCcEEEEECCCCc
Confidence 8866442 2245889999999999987765 35544 34334444 7889999999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 619 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+.++..|... .+.+++|+|||++|++|+.|++|++||+
T Consensus 317 ~l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999876441 2446899999999999999999999985
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=262.92 Aligned_cols=324 Identities=12% Similarity=0.122 Sum_probs=251.9
Q ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc--CCCCceEEe
Q 001176 457 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDY 534 (1132)
Q Consensus 457 ~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~--~~~~~~~~~ 534 (1132)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|+ |++|++++.|++|++||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC--CCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788887 899999999999999999999999984333 889999874 489999999999999999 676666666
Q ss_pred cCCCCeEEEEEEcC----CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc----------cCCceEEEEEeCCCCEE
Q 001176 535 DAPGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRF 600 (1132)
Q Consensus 535 ~~~~~~v~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l 600 (1132)
. .+..+..++|+| ||+++++++. .+++|.+||..+++++..+..+ ....+..+.++|++..+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 6 456789999999 9999998874 3678999999999998887652 23368889999988665
Q ss_pred EE-EEcCCeEEEEECCCCeeEE--EEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccc
Q 001176 601 LA-AGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKN 676 (1132)
Q Consensus 601 ~~-~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1132)
++ ...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+....
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~---- 366 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGK---- 366 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS----
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCC----
Confidence 54 5688999999998866544 4432 23578899999999877655 5889999999887 4333221100
Q ss_pred cCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCC
Q 001176 677 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756 (1132)
Q Consensus 677 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 756 (1132)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCC
Q 001176 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836 (1132)
Q Consensus 757 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~ 836 (1132)
..|
T Consensus 367 ----------------------------------------------------------------------------~ph- 369 (543)
T 1nir_A 367 ----------------------------------------------------------------------------TPH- 369 (543)
T ss_dssp ----------------------------------------------------------------------------SBC-
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 002
Q ss_pred CCCeeEEEEeeC-CCEEEEee--CCeEEEEECCC-------CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe-------C
Q 001176 837 EESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------E 899 (1132)
Q Consensus 837 ~~~v~~~~~s~d-g~~la~~s--dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-------~ 899 (1132)
......+ ++|+ |..++++. |++|.+||+.+ +++++++.+|.+.+..++|+| ++++|++++ .
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCccc
Confidence 2222222 3565 55566653 68899999888 899999999999999999999 899999887 2
Q ss_pred CCcEEEEEcccceee-eee--------ccccCCeeEEEEcCCCCEEEEE-----cCCCcEEEEECCCcccc
Q 001176 900 DSSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKL 956 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~-~~l--------~~h~~~V~~l~~spdg~~l~s~-----~~D~~i~iwd~~~~~~~ 956 (1132)
+++|.+||+.+++.. ..+ ..+...+..++|+|+|+.++.+ +.|+.|.+||.++++.+
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 679999999998766 443 3567889999999999998865 24799999999998754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-25 Score=258.21 Aligned_cols=337 Identities=10% Similarity=0.068 Sum_probs=250.6
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC--CCCeEEEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYT 489 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~--~~~~~~~~ 489 (1132)
+|+|++.++++++.|++|.+||..+++.+. ++..+.. +.+++|+|||+ ++++++.|++|.+||+ .+++.+.+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---~i~~g~~-~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGYA-VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---EEECSTT-EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---EEecCcc-cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEEE
Confidence 378999999999999999999999988765 4442222 88999999999 8999999999999999 89999988
Q ss_pred ecCCCCCeEEEEeecc--CCccEEEEEe-cCCeEEEEEcCCCCceEEecCC-----------CCeEEEEEEcCCCCEEEE
Q 001176 490 FEGHEAPVYSVCPHHK--ESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAP-----------GNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~--~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~ 555 (1132)
+. +...+..++|+|. .+|+++++++ .+++|.+||..+.+.+..+..+ ...+.++.++|++..+++
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 87 4556799999870 0347888777 5899999999998887766542 237889999999888776
Q ss_pred EecCCCCCCeEEEEeCCCCceee--eeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
... +++.|.+||..+++.+. .+. + ...+..++|+|+|+++++++ .+++|.+||..+++++..+........-
T Consensus 297 s~~---~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 297 NVK---ETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp EET---TTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred EEC---CCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence 653 57899999998876544 333 2 22577899999999887765 6899999999999999888742211111
Q ss_pred ceEE-EcCC-CCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCC
Q 001176 633 PRLR-FNKE-GSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 709 (1132)
Q Consensus 633 ~~~~-~s~~-~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 709 (1132)
..+. ++|+ +..++++. .|++|.+|+..+.. |....
T Consensus 372 ~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~~~---------------------------------- 409 (543)
T 1nir_A 372 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQYA---------------------------------- 409 (543)
T ss_dssp TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------CTTTB----------------------------------
T ss_pred CCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------Cchhc----------------------------------
Confidence 2233 4676 66666665 57999999987631 10000
Q ss_pred CCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc
Q 001176 710 PDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 789 (1132)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 789 (1132)
. +
T Consensus 410 ------------------------------------------------------------~-----------~------- 411 (543)
T 1nir_A 410 ------------------------------------------------------------W-----------K------- 411 (543)
T ss_dssp ------------------------------------------------------------T-----------S-------
T ss_pred ------------------------------------------------------------C-----------e-------
Confidence 0 0
Q ss_pred cceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--------CCeEE
Q 001176 790 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--------GGKVS 861 (1132)
Q Consensus 790 dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--------dg~i~ 861 (1132)
.++. +.+ | ...+..++++|||++|++++ +++|.
T Consensus 412 --~v~~----------------------------------l~~--~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 412 --KVAE----------------------------------LQG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp --EEEE----------------------------------EEC--S-CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred --EEEE----------------------------------EEc--C-CCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 0000 000 2 34456688888988888876 56899
Q ss_pred EEECCCCeEE-EEe--------eCCCCCeEEEEEeCCCCCeEEEEe-----CCCcEEEEEcccceeeeeeccc
Q 001176 862 LFNMMTFKVM-TMF--------MSPPPAATFLAFHPQDNNIIAIGM-----EDSSVQIYNVRVDEVKTKLKGH 920 (1132)
Q Consensus 862 vwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~~~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h 920 (1132)
+||+.+++.. ..+ ..+...+..++|+| +|+.|.++. .|+.|.|||..+++++.+++.+
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 9999988876 443 35677899999999 888887663 4799999999999999988754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=263.32 Aligned_cols=247 Identities=7% Similarity=-0.063 Sum_probs=174.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC------
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP------ 415 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp------ 415 (1132)
|...+....++++++ ++|+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEEECTTC
T ss_pred cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEcccccccc
Confidence 334444445555665 79999999999999999886543211 123789999999999998
Q ss_pred --CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE----
Q 001176 416 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---- 489 (1132)
Q Consensus 416 --dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~---- 489 (1132)
||++||+|+.|++|+|||+.++.... .+.+|..+|.+++|+|++.. +|++|+.|++|++||+.+++....
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence 89999999999999999998876544 46678999999999999864 799999999999999998765432
Q ss_pred ---------------------ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEc-
Q 001176 490 ---------------------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS- 547 (1132)
Q Consensus 490 ---------------------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s- 547 (1132)
..+|...|.++.|.+ .++..+++++.|+++++||+........+..+...+..+.+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 236778888998863 356899999999999999998776655554444443333332
Q ss_pred -----------------C-CCCEE-EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe
Q 001176 548 -----------------A-DGTRL-FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 608 (1132)
Q Consensus 548 -----------------~-~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 608 (1132)
| .+..+ ++++ .++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs----~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHS----QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEET----TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-
T ss_pred ccccccccCcceeEEEccCCCCEEEEEEC----CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-
Confidence 2 23344 4443 488999999999998888888777 899999999999999998665
Q ss_pred EEEEEC
Q 001176 609 IKFWDM 614 (1132)
Q Consensus 609 i~iwd~ 614 (1132)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-24 Score=245.32 Aligned_cols=284 Identities=8% Similarity=0.024 Sum_probs=220.1
Q ss_pred CCeeEEEEccCCCeEEEEEc----CCC----cEEEEec--CCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888999999988888886 467 8999999 8887653211 3456666666666
Q ss_pred cC--------------CCCeEEEEeCC------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 414 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 414 sp--------------dg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
++ .+..++.++.+ +.|++||++++. .. .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 54 26677766654 799999998543 33 4678999999999999999 78888877
Q ss_pred C---cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCeEEEEEEc
Q 001176 474 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 547 (1132)
Q Consensus 474 g---~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 547 (1132)
+ .|++||+.+++.. .+..|...+.+++|+|++ ..|+ +++.|+. |++||+.++.. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 567788899999998854 6666 6666655 99999987654 5666777889999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeeEEEEe
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (1132)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998873 223457999999887643 3444433 68889999999999988754 68999999988774 343
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCC---cEEEEEcCCc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDG 661 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~ 661 (1132)
.+ . .+.+++|+|||++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 33 2 688999999999999988877 7999998644
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=241.87 Aligned_cols=306 Identities=14% Similarity=0.147 Sum_probs=230.0
Q ss_pred cCCEEEEEEecCCCcEEEEEEc----CCC----cEEEEEC--CCCeEE--EEecCCCCCeEEEEeeccC-----------
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 506 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~----~dg----~v~vwd~--~~~~~~--~~~~~h~~~v~~i~~~~~~----------- 506 (1132)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346778889998876 676775 567 9999999 999887 4588898888877765420
Q ss_pred -CccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 507 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 507 -~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 45566677888999999999999999987532 2468999999998875 4
Q ss_pred eccccCCceEEEEEeCCCCEEE-EEEcCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC-CC--cE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 653 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i 653 (1132)
+..+.. .+.+++|+|+|+.|+ +++.++ .|++||+.+++. ..+..+. ..+.+++|+|||+.|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCcEE
Confidence 555554 789999999999888 555554 599999998876 3444443 46889999999999988876 44 45
Q ss_pred EEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccc
Q 001176 654 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 733 (1132)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1132)
.+||+.++. .. .
T Consensus 294 ~~~d~~~~~-~~-~------------------------------------------------------------------ 305 (415)
T 2hqs_A 294 YKVNINGGA-PQ-R------------------------------------------------------------------ 305 (415)
T ss_dssp EEEETTSSC-CE-E------------------------------------------------------------------
T ss_pred EEEECCCCC-EE-E------------------------------------------------------------------
Confidence 555655441 00 0
Q ss_pred ccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 813 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 813 (1132)
T Consensus 306 -------------------------------------------------------------------------------- 305 (415)
T 2hqs_A 306 -------------------------------------------------------------------------------- 305 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-C---CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCC
Q 001176 814 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 889 (1132)
Q Consensus 814 ~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 889 (1132)
+.. + ...+.+++|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+|
T Consensus 306 ----------------l~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 306 ----------------ITW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP- 363 (415)
T ss_dssp ----------------CCC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-
T ss_pred ----------------Eec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-
Confidence 000 1 33466788888888888776 3 47999999988773 455554 899999999
Q ss_pred CCCeEEEEeCCC---cEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 890 DNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 890 ~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
++++|++++.++ .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 899998888777 79999986 555778899999999999999653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=259.17 Aligned_cols=299 Identities=12% Similarity=0.087 Sum_probs=213.8
Q ss_pred CCCeeEEEEccCCCeEEEEEcC-CC-----cEEEEecCCCccccccceeeeeccccc----------ccccccccCCCCc
Q 001176 343 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWDISAAS----------MPLQNALLNDAAI 406 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~ 406 (1132)
...|.+++|||||++ |++++. |+ .|++||+.+++.... .+..... ...+...-.....
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLL-----VDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEE-----ECGGGTC--------------------CCE
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEc-----cchhhcccccccccchhhhhhhhhhhcccc
Confidence 457999999999994 666666 88 999999998875432 1000000 0000000000013
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC--ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
.|.+++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ .|++++ ++.|++||+.++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCC
Confidence 4889999999999999986 999999999872 232 3567888999999999999 677776 569999999998
Q ss_pred eEEEEecCCCCC----------------eEEEEeeccCCccEEEEEecCC------------------------------
Q 001176 485 RKQYTFEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG------------------------------ 518 (1132)
Q Consensus 485 ~~~~~~~~h~~~----------------v~~i~~~~~~~~~~l~s~s~dg------------------------------ 518 (1132)
+.......+... +.+++|+|++ +.|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 876555444432 4778898754 7888887765
Q ss_pred ---eEEEEEcCC-CCceEEec--CCCCeEEEEEEcCCCCEEEEEec-CCCCCCeEEEEeCCCCceeeeeccccCC---ce
Q 001176 519 ---KIKAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKR---SL 588 (1132)
Q Consensus 519 ---~i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v 588 (1132)
.|++||+.+ ++...... .+...+..++| |||++|++.+. ....+..|++||+.+++....+..+... .+
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 889999987 66544332 35668999999 99999997764 2234678999999999887777655432 23
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC-CCeeEEEEeCCCCCCCcceE-EEcCCCCEEEEEe-CCC--cEEEEEcCC
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTT-SDN--GIKILANSD 660 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~dg--~i~iw~~~~ 660 (1132)
..++|+|||+++++++.+|.+++|.+. ++. ...+..+. ..+..+ .|+|+|+.|+..+ .++ .+++|++..
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 578999999988888889877777765 344 55555442 356676 5999999776554 454 889998753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-23 Score=255.08 Aligned_cols=328 Identities=10% Similarity=0.017 Sum_probs=238.2
Q ss_pred cCCEEEEEEecCCCcEEEEEEcC-CC-----cEEEEECCCCeEEEEecCCCC------------------------CeEE
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEA------------------------PVYS 499 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~-dg-----~v~vwd~~~~~~~~~~~~h~~------------------------~v~~ 499 (1132)
...+.+++|+|||+ +|++++. |+ .|++||+.+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 34689999999999 7888887 88 999999999988777655433 3788
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
++|+|+ |++|++++. +.|++||+.++. ....+..+...+..++|||||++|+.++ ++.|++||+.+++..
T Consensus 114 ~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPD--AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTT--SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCC--CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 899875 488888886 999999998873 4445666777899999999999999886 347999999988776
Q ss_pred eeeccccCC---------------ceEEEEEeCCCCEEEEEEcCC---------------------------------eE
Q 001176 578 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 609 (1132)
Q Consensus 578 ~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~~dg---------------------------------~i 609 (1132)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 554433321 136799999999999987665 89
Q ss_pred EEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC-----CCcEEEEEcCCcceeeeeccccccccccCCCCCC
Q 001176 610 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683 (1132)
Q Consensus 610 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1132)
++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++ +....+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~------------ 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHET------------ 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEE------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcC------------
Confidence 9999988 876554432223346889999 99999987764 456777776655 111111000
Q ss_pred CCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEec
Q 001176 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763 (1132)
Q Consensus 684 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 763 (1132)
T Consensus 332 -------------------------------------------------------------------------------- 331 (741)
T 2ecf_A 332 -------------------------------------------------------------------------------- 331 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 764 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 764 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
.++ . ...+..+
T Consensus 332 -------------------------~~~-------------------------------------------~-~~~~~~~ 342 (741)
T 2ecf_A 332 -------------------------SPT-------------------------------------------W-VPLHNSL 342 (741)
T ss_dssp -------------------------CSS-------------------------------------------C-CCCCSCC
T ss_pred -------------------------CCC-------------------------------------------c-CCcCCce
Confidence 000 0 1123457
Q ss_pred EEeeCCCEEEEee-CCeEEEEECC-CCeEEEEeeCCCCCeEEE-EEeCCCCCeE-EEEeCCC--cEEEEEccc-ceeeee
Q 001176 844 ALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNII-AIGMEDS--SVQIYNVRV-DEVKTK 916 (1132)
Q Consensus 844 ~~s~dg~~la~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~sp~~~~~l-asg~~dg--~v~iwd~~~-~~~~~~ 916 (1132)
+|+|||+++++++ +|.++||.++ +++ ...+..|...+..+ .|+| +++.| ++++.++ .++||++.. +.....
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 7888888777776 6766666654 344 67777788888887 5999 77655 4555555 899999875 555666
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCC----CcEEEEECCCc
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 953 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D----~~i~iwd~~~~ 953 (1132)
+.. ...+..++|||||++|+....+ ..+.+|+..++
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 765 6678899999999998876544 46889988654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=257.68 Aligned_cols=288 Identities=9% Similarity=0.080 Sum_probs=211.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCc---CeEEEEEcCCCCeE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLML 420 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~l 420 (1132)
..+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEE
Confidence 3578899999998 5666 6799999999999875432 334443 49999999999999
Q ss_pred EEEeCC---------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 421 GVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 421 as~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
|+++.+ +.+.+||+.+++. .......+|...+.+++|||||+ .|++++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999764 7889999998875 22223334556689999999999 6777774 799999999988776655
Q ss_pred CCCCCe------------------EEEEeeccCCccEEEEEecCC----------------------------------e
Q 001176 492 GHEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------K 519 (1132)
Q Consensus 492 ~h~~~v------------------~~i~~~~~~~~~~l~s~s~dg----------------------------------~ 519 (1132)
.+...+ .+++|+|++ +.|++++.|+ .
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 544433 789998754 7888887653 7
Q ss_pred EEEEEcCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce----E
Q 001176 520 IKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----G 589 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~ 589 (1132)
|++||+.++.....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ .
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999887765555543 568899999999998877664434467899999999987776654433233 3
Q ss_pred EEEEeCCCCEEEEE--EcCC------eEEEEE-CCCCee--EEEEeCCCCCCCcce-EEEcCCCCEEEEEeCC---CcEE
Q 001176 590 VVQFDTTRNRFLAA--GDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIK 654 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~i~ 654 (1132)
.++|+|||+.|+.. ..++ .|++|| ..+++. ...+... ...+.. ++|+|||+.|+..+.+ +.++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 68999999977764 4566 577788 344441 3333321 113444 6899999999877665 7889
Q ss_pred EEEcCC
Q 001176 655 ILANSD 660 (1132)
Q Consensus 655 iw~~~~ 660 (1132)
+|++..
T Consensus 388 l~~~~~ 393 (723)
T 1xfd_A 388 LYSANT 393 (723)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-21 Score=216.37 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=207.3
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC-CC
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 427 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-dg 427 (1132)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999876542 22244556 9999999997776655 88
Q ss_pred eEEEEEecCCCc-eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC---cEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 428 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 428 ~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
.|.+||..+++. .. .+..+..+..+++|+|+|+ +++++..++ .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998876 33 3455666665699999999 666555443 8999999999998887654 456899998
Q ss_pred ccCCccEEEEEecCCe-EEEEEcCCCCceE----EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--
Q 001176 504 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 576 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 576 (1132)
|++. .++++...++. |.+|+++..+... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8652 25555566688 9999998655442 22233456889999999998776653 477899999999988
Q ss_pred -eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCee--EEEEeCC--CCCCC---cceEEEcCCCCEEEEE
Q 001176 577 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLPA---SPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 577 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~~~~s~~~~~l~~~ 647 (1132)
+..+.... .+..++|+|+|+++++++ .++.|.+||..+++. +..+... ..... ...++|+|||++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776542 577899999999877665 578899999999887 4444322 11112 2458999999988766
Q ss_pred eC-CCcEEEEEcCCc
Q 001176 648 TS-DNGIKILANSDG 661 (1132)
Q Consensus 648 ~~-dg~i~iw~~~~~ 661 (1132)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-22 Score=248.66 Aligned_cols=382 Identities=11% Similarity=0.064 Sum_probs=250.0
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC--ceEEEEEeCCCCEEEEEEcC---------Ce
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDE---------FQ 608 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~ 608 (1132)
.+.+++|+|||+++++ + .++.|++||+.+++....+..+... .+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3668999999999888777766531 38899999999999998764 78
Q ss_pred EEEEECCCCeeEEEEeC-CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 609 IKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
+++||+.+++. ..+.. ..+...+..++|+|||+.|++++. +.|++|++.++ +..+....+...+.
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~~----------- 158 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGVI----------- 158 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTTE-----------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCce-----------
Confidence 89999999876 33332 222234889999999999999886 79999999877 33322221110000
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcc
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 767 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 767 (1132)
..+ +.-|-.. ..
T Consensus 159 -------------------------------------------------~~g----~~~~v~~---------------ee 170 (723)
T 1xfd_A 159 -------------------------------------------------YNG----LSDWLYE---------------EE 170 (723)
T ss_dssp -------------------------------------------------EEE----ECCHHHH---------------HT
T ss_pred -------------------------------------------------ECc----ccceeEE---------------EE
Confidence 000 0000000 00
Q ss_pred cccceEEEEEecCCceEEeeccc-ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
-...+.+++|+|||+.|+.++.+ +.+.+|++.... + .+ ...+..+.|.
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~~-~~~~~~~~~~ 219 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------SI-YPTVKPYHYP 219 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------SS-SCCCEEEECC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------cC-CCcceeccCC
Confidence 11245789999999999888765 467777653100 0 01 3347788898
Q ss_pred eCCCEEEEeeCCeEEEEECCCCeEEEEeeCC------CCCeEEEEEeCCCCCeEEEEeC----CCcEEEEEcccceeeee
Q 001176 847 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 847 ~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~~~~~ 916 (1132)
++|.. ..+.+|++||+.+++....+..+ ...+..++|+| +|++|++... +..|++||+.+++....
T Consensus 220 ~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88863 22468999999998866666654 56789999999 8888877653 35799999999987766
Q ss_pred eccc-cCCe----eEEEEcCCCCEEEE--EcCCC------cEEEEE-CCCcccccceeeeCCCCCCCCCCCcee-EEECC
Q 001176 917 LKGH-QNRI----TGLAFSPTLNALVS--SGADA------QLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETK-VQFHN 981 (1132)
Q Consensus 917 l~~h-~~~V----~~l~~spdg~~l~s--~~~D~------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~ 981 (1132)
+..+ ...+ ..++|||||+.|+. ...++ .|.+|| ..+++......+. .++ ..+.. ++|+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~----~~~~~~~~~sp 369 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGD----WDVTKILAYDE 369 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSS----SCEEEEEEEET
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCC----eEEEeeeEEcC
Confidence 5443 3434 37899999998775 44666 466677 3333200001111 111 23343 69999
Q ss_pred CCcEEEE-EeC---CeEEEEeCC--CC-ceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEeCCCccee
Q 001176 982 DQTHLLV-VHE---SQISVYDSK--LE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-G--AIGVFDAETLRFR 1049 (1132)
Q Consensus 982 dg~~l~~-~~d---~~v~vwd~~--~~-~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-g--~i~vwd~~~~~~~ 1049 (1132)
||+.|+. +.+ +.+++|++. +. ....+.....|...+..++|||||++|+..... + .+.+++..++..+
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~ 447 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEE
Confidence 9999987 444 779999983 22 223232211146778999999999988875432 2 2445566555544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=212.95 Aligned_cols=279 Identities=11% Similarity=0.093 Sum_probs=217.1
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEEcC------CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 337 VRTLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 337 ~~~l~h~~~V~~~~~spdg~~lla~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
+........+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..
T Consensus 34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~ 93 (353)
T 3vgz_A 34 MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFG 93 (353)
T ss_dssp EEEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCS
T ss_pred hhhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcce
Confidence 3444556789999999999965555433 67899999998876542 11 2334778
Q ss_pred EEEcCCCCeEEEE-eCCCeEEEEEecCCCceeeeeeeecccC---------CEEEEEEecCCCcEEEEEE--cCCCcEEE
Q 001176 411 CVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTC--GDDKMIKV 478 (1132)
Q Consensus 411 v~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~v~~s~d~~~~~l~s~--~~dg~v~v 478 (1132)
++|+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++. ++++ +.++.|.+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWV 168 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEE
Confidence 9999999966554 5579999999999876553 333322 2788999999995 4443 46889999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCeEEEEEEcCCCCEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~ 554 (1132)
||+.+++.+..+..+...+.+++|+|++ ..+++++.++.|.+||..+++....+.. +...+..++|+|+|++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 9999999998887666678889998754 7899999999999999998877766554 445688899999999888
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++.. .++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.
T Consensus 247 ~~~~---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~ 317 (353)
T 3vgz_A 247 ITDS---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPN 317 (353)
T ss_dssp EEES---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEE
T ss_pred EEeC---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCC
Confidence 7763 36789999999999888777543 24589999999777766 68999999999999988887543 578
Q ss_pred eEEEcCCCCEEEEEeCCC
Q 001176 634 RLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg 651 (1132)
+++|+|+|++|+++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999887776654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-21 Score=240.89 Aligned_cols=358 Identities=11% Similarity=0.080 Sum_probs=233.3
Q ss_pred EEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEecCCC-----------------CCeEEEEeeccCCccEEEEE
Q 001176 453 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHE-----------------APVYSVCPHHKESIQFIFST 514 (1132)
Q Consensus 453 v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~-----------------~~v~~i~~~~~~~~~~l~s~ 514 (1132)
+..+.|+ |. .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|+|+ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 5567888 55 466677777 8 9999999873 3333332 56999999886 344444
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-----CceeeeeccccCC---
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-----GAIKRTYSGFRKR--- 586 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~--- 586 (1132)
.++.|++||+.+++.. .+..+...+.+++|||||++|+++. ++.|++||+.+ ++.......+...
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3444566788899999999999863 57899999998 7766554443321
Q ss_pred ----------ceEEEEEeCCCCEEEEEE---------------------------------cCCeEEEEECCCCeeEEEE
Q 001176 587 ----------SLGVVQFDTTRNRFLAAG---------------------------------DEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 587 ----------~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 623 (1132)
.+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 147899999999999987 4468999999998865544
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEeCCC-----cEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcc
Q 001176 624 DADGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 698 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 698 (1132)
....+...+.+++|+|||+.|++++.++ .|++||+.++............
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~------------------------- 306 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK------------------------- 306 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS-------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC-------------------------
Confidence 3323334688999999999999887765 8999998877221111110000
Q ss_pred ccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEe
Q 001176 699 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT 778 (1132)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 778 (1132)
.....+..++|+
T Consensus 307 --------------------------------------------------------------------~~~~~~~~~~~s 318 (706)
T 2z3z_A 307 --------------------------------------------------------------------HYVEPLHPLTFL 318 (706)
T ss_dssp --------------------------------------------------------------------SCCCCCSCCEEC
T ss_pred --------------------------------------------------------------------CeECccCCceee
Confidence 000123457899
Q ss_pred c--CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE-EEEeeCCCEEEEe
Q 001176 779 N--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IALSKNDSYVMSA 855 (1132)
Q Consensus 779 ~--~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~-~~~s~dg~~la~~ 855 (1132)
| ||+.++++..++.+++|.++. . +..... +.. | ...+.. ++|+|||+.|+.+
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~--------------------~-~~~~~~-l~~--~-~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDT--------------------T-GRLIRQ-VTK--G-EWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEET--------------------T-SCEEEE-CCC--S-SSCEEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEEEccCCccEEEEEEC--------------------C-CCEEEe-cCC--C-CeEEEeeeEEcCCCCEEEEE
Confidence 9 999888888899999997641 1 111111 222 3 556766 7999999988766
Q ss_pred e--CC----eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC----CcEEEEEcccceeeeeeccccCCee
Q 001176 856 S--GG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 856 s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
+ ++ .|..||+.+++ ...+. |...+.+++|+| ++++++....+ +.|++||+.+++ ...+. +...+.
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~ 448 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDT 448 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC----
T ss_pred ecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhh
Confidence 5 34 67777877765 33343 677799999999 88877766443 569999998887 33333 434444
Q ss_pred EEEEcCCCCEEEEEcCCC--cEEEEEC
Q 001176 926 GLAFSPTLNALVSSGADA--QLCMWSI 950 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~--~i~iwd~ 950 (1132)
...+.+.. .+-..+.|| .+..|-.
T Consensus 449 ~~~~~~~~-~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 449 GYAMPEIR-TGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp --CCCCEE-EEEEECTTSSSEEEEEEE
T ss_pred hcCCCCcE-EEEEEcCCCCEEEEEEEE
Confidence 44443322 233334455 5555543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-21 Score=236.00 Aligned_cols=237 Identities=9% Similarity=-0.027 Sum_probs=169.1
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce-eeeeeeeccc-----------------CCEEEEEEecCCCcEEEEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 469 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~v~~s~d~~~~~l~s 469 (1132)
+..+.|+ |+.+++++.++ | +||+.+++.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4557888 67777777888 8 9999998762 32 22332 56999999999 5 3444
Q ss_pred EcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCe----
Q 001176 470 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 540 (1132)
Q Consensus 470 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~---- 540 (1132)
+. ++.|++||+.+++... +..+...+.+++|+|++ +.|+++ .|+.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 33 5999999999887654 44567788889998854 788874 789999999988 6555433333332
Q ss_pred ----------EEEEEEcCCCCEEEEEecC-----------------------------CCCCCeEEEEeCCCCceeeeec
Q 001176 541 ----------CTMMAYSADGTRLFSCGTS-----------------------------KEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 541 ----------v~~~~~s~~~~~l~~~~~~-----------------------------~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+.+++|||||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988632 1135779999999888655443
Q ss_pred c-ccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeEEEEe-CC--CCCCCcceEEEcC--CCCEEEEEeCC
Q 001176 582 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-AD--GGLPASPRLRFNK--EGSLLAVTTSD 650 (1132)
Q Consensus 582 ~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~~~~s~--~~~~l~~~~~d 650 (1132)
. .....+..++|+|||+++++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..|
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 1223688999999999999988775 89999999984333332 11 1112347789999 99999999999
Q ss_pred CcEEEEEcC
Q 001176 651 NGIKILANS 659 (1132)
Q Consensus 651 g~i~iw~~~ 659 (1132)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 999999875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-20 Score=205.93 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=193.2
Q ss_pred CeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC-CeEEEEE
Q 001176 356 QTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLYT 433 (1132)
Q Consensus 356 ~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d-g~i~iwd 433 (1132)
++++++++.|+.|++|++.. ++.... . ...|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT---Q---------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE---E---------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe---e---------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 44666668899999999963 322110 0 12366789999999999999988886 9999999
Q ss_pred ec--CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC---CCeEEEEecCCCCCeEEEEeeccCCc
Q 001176 434 YN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKESI 508 (1132)
Q Consensus 434 ~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~ 508 (1132)
++ ++. ......+..+. .+.+++|+|+++. +++++..++.|.+||+. .++.+..+..+ ..+.+++|+|++
T Consensus 67 ~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg-- 140 (343)
T 1ri6_A 67 IAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN-- 140 (343)
T ss_dssp ECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS--
T ss_pred ecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC--
Confidence 98 444 22333344333 7899999999993 33445558999999994 44455555544 458888998754
Q ss_pred cEEEEEe-cCCeEEEEEcCCCCceE-----EecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC--Cce--e
Q 001176 509 QFIFSTA-IDGKIKAWLYDYLGSRV-----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI--K 577 (1132)
Q Consensus 509 ~~l~s~s-~dg~i~~wd~~~~~~~~-----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~ 577 (1132)
.++++++ .++.|++||+.+..... .... ....+..++|+|+++++++++. .++.|.+|++.. ++. .
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEE
Confidence 6677776 89999999998733322 2222 3457889999999998877652 477899999953 433 2
Q ss_pred eeec---cc-c-CCceEEEEEeCCCCEEEEEE-cCCeEEEEECC--C--CeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 578 RTYS---GF-R-KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 578 ~~~~---~~-~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
..+. .. . ...+..++|+|++++++++. .++.|++||+. + .+.+..+..+. .+..++|+|+|++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEe
Confidence 2222 11 1 12466799999999888655 78999999998 3 34444454432 37899999999988888
Q ss_pred e-CCCcEEEEEcC
Q 001176 648 T-SDNGIKILANS 659 (1132)
Q Consensus 648 ~-~dg~i~iw~~~ 659 (1132)
+ .++.|.+|++.
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 7 58999999554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=210.46 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=172.0
Q ss_pred CCCeeEEEEeeCCCEEEEee-C-CeEEEEECC--CCe--EEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEc-
Q 001176 837 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV- 908 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~- 908 (1132)
...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 56788899999999998887 4 899999997 554 444555444 789999999 788776665 4889999999
Q ss_pred --ccceeeeeeccccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECCC-cccccce--eeeCCCCCCCCCCCceeEEECCC
Q 001176 909 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 909 --~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
.+++.+..+..+ ..+.+++|+|+|+++++++ .++.|.+||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 445555555544 4588999999999888777 899999999987 4422111 1222122 35678999999
Q ss_pred CcEEEEE--eCCeEEEEeCCC--Cce---eec---CCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEeCC--Cc--c
Q 001176 983 QTHLLVV--HESQISVYDSKL--ECS---RSW---SPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAE--TL--R 1047 (1132)
Q Consensus 983 g~~l~~~--~d~~v~vwd~~~--~~~---~~~---~~~~~h~~~i~~i~~s~dg~~las~-~~dg~i~vwd~~--~~--~ 1047 (1132)
|++++++ .++.|.+|++.. ... ... .........+..++|+|||++|+++ ..++.|.+||+. ++ +
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 9988764 578999999932 221 111 1111123467789999999988754 479999999998 33 3
Q ss_pred eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEe-CCCcEEEEecC
Q 001176 1048 FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1098 (1132)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~Dg~i~vW~~~ 1098 (1132)
.+..+. .+ ..+..++|+| ++++|++++ .|+.|.+|++.
T Consensus 269 ~~~~~~-----------~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 269 KEGFQP-----------TE-TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEE-----------CS-SSCCCEEECT-TSSEEEEECTTTCEEEEEEEE
T ss_pred Eeeeec-----------CC-CccceEEECC-CCCEEEEecCCCCeEEEEEEc
Confidence 332221 22 2277899999 778777777 68999999654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-21 Score=207.15 Aligned_cols=257 Identities=12% Similarity=0.117 Sum_probs=190.8
Q ss_pred EEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC-CCc
Q 001176 361 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 439 (1132)
Q Consensus 361 ~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~-~~~ 439 (1132)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999999887543 345788999999999999999986 78999999998 765
Q ss_pred eeeeeeeecc-cCCEEEEEEecCCCcEEEEEEc--CCCcEEEE--ECCCCeEEEEecCCCCCeEEEEeeccCCccEEE-E
Q 001176 440 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 513 (1132)
Q Consensus 440 ~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~--~dg~v~vw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s 513 (1132)
.. ...+| ...+.+++|+||++ +|++++ .++...|| ++.+++ ...+..+. .+..++|+|++ ..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 23344 46789999999999 677777 33445555 545554 44555443 48889998765 6555 7
Q ss_pred EecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEE
Q 001176 514 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 591 (1132)
Q Consensus 514 ~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 591 (1132)
++.++.+++|+++.. .....+..+...+.+++|+|+|++|+.++. .++.+.+|++. .+..+..+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344556667778999999999999887763 24567777765 4555666666554 78889
Q ss_pred EEeCCCCEEEEEEcC-----------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 592 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 592 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
+|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|+++.|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 569999999887644433222233788999999999998887753
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-19 Score=200.64 Aligned_cols=197 Identities=10% Similarity=-0.001 Sum_probs=144.2
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCCCc-eEE
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGS-RVD 533 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~-~~~ 533 (1132)
..|.+++.. .+++++.++.|.+||+.+++.+..+..+...+ .++|+|++ .++++++. ++.|.+||+.++.. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 356666664 68889999999999999999988887766667 89998755 65555554 89999999998887 556
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE-EcCCe-EEE
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQ-IKF 611 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i 611 (1132)
+..+.....+++|+|+|+++++... ..+.+.|.+||+.+++.+..+.... ....++|+|+|++++++ ..++. |.+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCceEEE
Confidence 6655555555999999999994332 1122289999999999888876544 46889999999876665 45577 999
Q ss_pred EECCCCeeEEE----EeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCc
Q 001176 612 WDMDNMNMLTT----VDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 661 (1132)
Q Consensus 612 wd~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 661 (1132)
|++.....+.. .... ......++|+|+|+++++++ .++.|.+||+.++
T Consensus 156 ~~~~~~g~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISG--GTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp EEECTTCCEEEEEEEEECS--SSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred EEECCCCcEeecCCccccC--CCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99876443311 1111 12468999999999665554 5889999998765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=202.31 Aligned_cols=299 Identities=10% Similarity=0.064 Sum_probs=204.1
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc--
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 584 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 584 (1132)
.++++++.++.|.+||+.+++....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5799999999999999998877666654332 4788999999988776653 36789999999999887766432
Q ss_pred --CCceEEEEEeCCCCEEEEEE------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 585 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 585 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
...+..++|+|+++++++++ .++.|++||+.+++.+..+... ..+.+++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11456789999999998886 5799999999999888877653 257889999999988887 6
Q ss_pred CcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccc
Q 001176 651 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 730 (1132)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1132)
+.|.+||+.++ +....+..+.... ...+.
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~~--------------------------------------------------~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWEA--------------------------------------------------ETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTTT--------------------------------------------------TTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccCC--------------------------------------------------CceeC
Confidence 89999999888 4443332211000 00112
Q ss_pred ccccccccccc-Ccee--eeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 731 VDVKPRVAEDV-DKIK--SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 731 ~~~~~~~~~~~-~~v~--~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
++++.+..... +... +|. .....++..... .....+.+|
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~-~~~~~v~~~----------- 224 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFY--------------------------TARKDIDPADPT-AYRTGLLTM----------- 224 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEE--------------------------EEBTTSCTTSGG-GEEEEEEEE-----------
T ss_pred CCccEEeeeccCCCceeeeee--------------------------cccccccccccc-ccccceEEE-----------
Confidence 22222111111 1000 010 000000000000 111234444
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEe
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 887 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 887 (1132)
|+.++++....+.. + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+
T Consensus 225 -----------d~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 288 (337)
T 1pby_B 225 -----------DLETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVS 288 (337)
T ss_dssp -----------ETTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEEC
T ss_pred -----------eCCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEEC
Confidence 44454443222222 3 5567899999999999988 799999999999988887743 567899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeeecccc
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 921 (1132)
| ++++|++++.++.|++||+.+++.+..+..+.
T Consensus 289 ~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 289 T-DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp T-TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred C-CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 9 88888888999999999999999888876553
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=203.07 Aligned_cols=276 Identities=8% Similarity=0.009 Sum_probs=205.0
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCc-CeEEEEEcCCCCeEE-EEeCCCeEEEEEec
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 435 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~la-s~~~dg~i~iwd~~ 435 (1132)
++++++.++.|.+||+.+++.+.. + ..++.. .+.+++|+|||++++ +++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~--~----------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV--I----------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE--E----------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE--E----------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 688899999999999998876542 0 111222 478899999998764 55567899999999
Q ss_pred CCCceeeeeeeec---ccCCEEEEEEecCCCcEEEEEEc------------CCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 436 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 436 ~~~~~~~~~~l~~---h~~~v~~v~~s~d~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
+++.+... .+.. |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88765432 1211 223678899999998 566664 579999999999998877764 4567888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCC----------------
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 564 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 564 (1132)
+|+|++ .+|+++ ++.|.+||+.+++....+..+.. ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 887754 667666 78999999998876665554431 012378999987765542 111
Q ss_pred -------eEEEEeCCCCceee-eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 565 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 565 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
.|.+||+.+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999987652 2222332 67789999999999888 7899999999999888876542 578999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
|+|+|++|++++.++.|.+||+.++ +....+..
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence 9999999999999999999999988 55555443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=199.60 Aligned_cols=273 Identities=8% Similarity=0.024 Sum_probs=205.5
Q ss_pred CcceeeecCCCCCCceecc--------------CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC
Q 001176 311 QSDEVSFAGVAHTPNVYSQ--------------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR 376 (1132)
Q Consensus 311 ~v~~~~~~~~g~~~~~~~~--------------d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~ 376 (1132)
.+..++++|+|+.+++... |..+++....+.....+.+++|+|+|+++++++..++.|.+||..++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 5667899999988776553 33456677777766678999999999977778888899999999998
Q ss_pred ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe--CCCeEEEEEecCCCceeeeeeeecccCCEE
Q 001176 377 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTGELRQHLEIDAHVGGVN 454 (1132)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~--~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~ 454 (1132)
+.+.... ......+ .......+.+++|+|||+++++++ .++.|.+||..+++... .+..+...+.
T Consensus 122 ~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~ 188 (353)
T 3vgz_A 122 EVKGRLV-----LDDRKRT-----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMST 188 (353)
T ss_dssp CEEEEEE-----SCCCCCC-----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTCC
T ss_pred eeEEEEe-----cCCCccc-----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCccc
Confidence 7654210 0000000 000111378899999999887776 47899999999876554 3444555688
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC----CCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCCC
Q 001176 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLG 529 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~ 529 (1132)
+++|+|+++ .+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++ ..++.++ .++.|.+||..+++
T Consensus 189 ~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 189 GLALDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCEEETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCC
T ss_pred eEEECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCc
Confidence 999999999 788888899999999999998887764 55678889998865 5555554 56999999999888
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC
Q 001176 530 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 607 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1132)
....+..... ..++|+|+|++++++.. .++.|.+||..+++.+..+.... .+..++|+|++++++++..++
T Consensus 265 ~~~~~~~~~~--~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAAPES--LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECSSC--CCEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEcCCC--ceEEECCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 7766654432 57999999998777653 47789999999999888877543 578899999999888776553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=202.13 Aligned_cols=247 Identities=11% Similarity=0.173 Sum_probs=170.0
Q ss_pred CCCeeEEEEeeCCCEEEEee---CCeEEEEECCCCe--EEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEcc-
Q 001176 837 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR- 909 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~- 909 (1132)
...+..++|+|||+++++.. ++.|++||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 44567899999999444433 3789999998765 4445555777899999999 888888877 77999999996
Q ss_pred cc--eeeeeecc---------ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CcccccceeeeCCCCCCCCCCCceeE
Q 001176 910 VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 910 ~~--~~~~~l~~---------h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..+
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~~ 192 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRHL 192 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCceE
Confidence 33 23333321 12348889999999977777788999999998 443221111122222 346789
Q ss_pred EECCCCcEEEEE--eCCeEEEEeCC--CCcee---ecCCCC---CCCCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCc
Q 001176 978 QFHNDQTHLLVV--HESQISVYDSK--LECSR---SWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 978 ~~s~dg~~l~~~--~d~~v~vwd~~--~~~~~---~~~~~~---~h~~~i~~i~~s~dg~~la-s~~~dg~i~vwd~~~~ 1046 (1132)
+|+|||++++++ .++.|.+|++. ..... ...... .....+..++|+|||++|+ +...++.|.+|++...
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999987774 46889999983 22221 111111 0114588999999999874 5556899999999732
Q ss_pred ---ceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-CcEEEEec--CCCc
Q 001176 1047 ---RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP--SDAE 1101 (1132)
Q Consensus 1047 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-g~i~vW~~--~~~~ 1101 (1132)
+.+..+ ..+...+..++|+| |+++|++++.+ +.|.+|++ .+++
T Consensus 273 g~~~~~~~~-----------~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 273 GHLTLIQQI-----------STEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GCEEEEEEE-----------ECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CcEEEeEEE-----------ecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 222222 23345678999999 78888777755 89999955 4555
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-20 Score=221.10 Aligned_cols=272 Identities=14% Similarity=0.100 Sum_probs=198.3
Q ss_pred CCCeeEEEEccCCCeEEEEEc-CCCcEEEEecCCCccccccceeeeecccccccccccccCCCC-cCeEEEEEcCCCCeE
Q 001176 343 GSNVMSMDFHPQQQTILLVGT-NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLML 420 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l 420 (1132)
..+|++++|||||++ ||.++ .||+++||++.+++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 347999999999995 55555 49999999987665432 33444 68999999999 777
Q ss_pred EEEeC---CCeEEEEEecC--CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 421 GVAFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 421 as~~~---dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
++++. +....+|.++. ..... .+..+ ..+...+|+|||+.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45567776654 22222 12222 234567999999875666666555 4599999988655444333
Q ss_pred CeEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 496 PVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|||||++|+++.. ++...|++||+
T Consensus 153 --~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 788888854 899988877 78999999877654 56777788999999999999995532 33348999999
Q ss_pred CCCceeeeeccccCCceEEEE--------EeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE
Q 001176 572 SEGAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1132)
.+++.. .+.++.. .+..++ |+|||..+++++.++.+++|++ ++.... . ...+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEE
Confidence 998877 6665544 555566 9999988888999999999999 655441 1 2367899999 9999
Q ss_pred EEEEeCCCc---EEEEEcC
Q 001176 644 LAVTTSDNG---IKILANS 659 (1132)
Q Consensus 644 l~~~~~dg~---i~iw~~~ 659 (1132)
+++++.+.+ +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 988887754 5555543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=196.74 Aligned_cols=253 Identities=9% Similarity=0.042 Sum_probs=185.7
Q ss_pred ceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCC
Q 001176 325 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 325 ~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.++.++...++......|...|.+++|+|||+ +|++++ ++.|++||+.+ ++.... ..+
T Consensus 23 ~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~ 81 (297)
T 2ojh_A 23 SIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTG 81 (297)
T ss_dssp EEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCT
T ss_pred eEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccc
Confidence 34445555566666666899999999999999 466665 78999999998 765431 223
Q ss_pred C-CcCeEEEEEcCCCCeEEEEe--CCCeEEEEEe--cCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 404 A-AISVNRCVWGPDGLMLGVAF--SKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 404 h-~~~V~~v~~spdg~~las~~--~dg~i~iwd~--~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
| ...|.+++|+|||++|++++ .++...||.+ .++. .. .+..+ ..+.+++|+||++. ++++++.|+.++|
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l 155 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDI 155 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEE
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEE
Confidence 4 46889999999999999998 3345566655 4443 22 23333 35899999999994 3347888999999
Q ss_pred EECC-CCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcC-CCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|++. .+.....+..|...+.+++|+|++ ..|+.++ .++.+++|+++ .......+..+...+.+++|+|+|++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred EEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 9863 233446677788899999998754 6666555 69999999987 45566677777778999999999999998
Q ss_pred EecCCC-------CCCeEEEEeCCCCceee--eeccccCCceEEEEEeCCCCEEEEEEcCC
Q 001176 556 CGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 607 (1132)
Q Consensus 556 ~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1132)
++.+.. .+..|++||+.+++... .+.++.. .+..++|+|++++|++++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 875321 23679999999886543 3335544 688899999999999887553
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=223.72 Aligned_cols=285 Identities=7% Similarity=0.023 Sum_probs=190.4
Q ss_pred eEEEEEecCCceEEeecc---------cceeEEEeeccccCCCCCccccccccccccCCCcCccc-ccCCCCCCCCCCee
Q 001176 772 VVRLIYTNSGLSLLALAS---------NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAA 841 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~h~~~~v~ 841 (1132)
+.+++|||||++|+.++. ++.+++||+. +++... ..+ ...+.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~l------~~~~~ 113 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNEL------PRPIQ 113 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSCC------CSSBC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCccccceec------Ccccc
Confidence 678999999999988876 6788888754 333210 001 23578
Q ss_pred EEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEe-eCCCCCe-----------------EEEEEeCCCCCeEEEEeCCC--
Q 001176 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF-MSPPPAA-----------------TFLAFHPQDNNIIAIGMEDS-- 901 (1132)
Q Consensus 842 ~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~~~~~lasg~~dg-- 901 (1132)
.++|||||+.||.+.++.|++||+.+++..... .++...| .+++||| ||+.||+++.|.
T Consensus 114 ~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~ 192 (719)
T 1z68_A 114 YLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTD 192 (719)
T ss_dssp CEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTT
T ss_pred cceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCC
Confidence 899999999999999999999999988765433 2222222 5899999 899999987652
Q ss_pred --------------------------------cEEEEEcccceee--------eeeccccCCeeEEEEcCCCCEEEEEcC
Q 001176 902 --------------------------------SVQIYNVRVDEVK--------TKLKGHQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 902 --------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
.|++||+.+++.. ..+.+|...+.+++||||++++++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~ 272 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK 272 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence 7889999988653 224568888999999999887777443
Q ss_pred C----CcEEEEE----CCCcccccceeeeCCCCCCCCCCCce-----eEEECCCCcEEEE--E-eCC--eEEEEeCCCCc
Q 001176 942 D----AQLCMWS----IDKWEKLKSRFIQAPAGRQSPLVGET-----KVQFHNDQTHLLV--V-HES--QISVYDSKLEC 1003 (1132)
Q Consensus 942 D----~~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~l~~--~-~d~--~v~vwd~~~~~ 1003 (1132)
. ..|.+|| +.+++...... ....++. ..+. .++|+|||+.++. + .++ .|.+||+.+..
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred cccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 2 2488899 77765332110 0001222 2233 7899999997665 3 233 57778885444
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCC--cce-ecccCCCccccccccCCCCCCcEEEEe
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAET--LRF-RCRIGPSAYIPTYAVSSNTAHPLVIAP 1075 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1075 (1132)
...+.. +...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... ..+|...+..+.|
T Consensus 349 ~~~lt~---~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~-------~~~~~~~~~~~~~ 417 (719)
T 1z68_A 349 AIQITS---GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH-------LRKERCQYYTASF 417 (719)
T ss_dssp CEECSC---SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT-------TTTTTBCBEEEEE
T ss_pred eEeccc---CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc-------cCCCCCceEEEEE
Confidence 444432 25568888888 88887776655 7888988764 421 1222100 1135556778999
Q ss_pred CCCCCCeEE-EEeCC--CcEEEEecCCCc
Q 001176 1076 HPSEPNQIA-LGMSD--GAVHVVEPSDAE 1101 (1132)
Q Consensus 1076 ~p~~~~~l~-s~~~D--g~i~vW~~~~~~ 1101 (1132)
+| ++++++ +++.+ ..+.+||+.+++
T Consensus 418 s~-dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 418 SD-YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CG-GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CC-CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 99 555554 45444 578899998876
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-18 Score=197.49 Aligned_cols=314 Identities=12% Similarity=0.112 Sum_probs=197.2
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..+..+++++++..+++++.++ +++|+........... .....+...... ..+ .+ ...|.+++|+|+|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~---~~-~~~v~~l~~spdg 104 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQG----LLV---PM-KFPIHHLALSCDN 104 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCC----EEE---CC-SSCEEEEEECTTS
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcc----ccc---cC-CCcccEEEEcCCC
Confidence 4578899999999999988887 8888764311100000 000000000000 001 13 6679999999999
Q ss_pred CEEE----Eee-CCeEEEEECCCC--------e---EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 850 SYVM----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 850 ~~la----~~s-dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
++|+ +++ |++|++||+.++ + .+..+.+|...|++++|+|+++.+||+++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 676 899999998764 2 24566779999999999994489999999999999999999877
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC-CCCCCceeEEECCCCcEEEEE--e
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTHLLVV--H 990 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~--~ 990 (1132)
+....+|...|++++|+|+|++|++++.||+|++||+. ++... .+....... .....+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77777899999999999999999999999999999998 33211 111111100 001368899999999988773 3
Q ss_pred CC------eEEEEeCCCCc---e---eecCCC----CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcc--e-ec
Q 001176 991 ES------QISVYDSKLEC---S---RSWSPK----DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLR--F-RC 1050 (1132)
Q Consensus 991 d~------~v~vwd~~~~~---~---~~~~~~----~~h~~~i~~i~~s~dg~~las~~~-dg~i~vwd~~~~~--~-~~ 1050 (1132)
+| .+++|++.... . ..+... .+...+-..+.+-+|.+++++++. .+.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 38999993221 1 111100 011223333344478777766554 3445555533211 0 00
Q ss_pred ccCC--CccccccccCCCCCCcEEEEeC--CCC------------CCeEEEEeCCCcEEEEecCC
Q 001176 1051 RIGP--SAYIPTYAVSSNTAHPLVIAPH--PSE------------PNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1051 ~~~~--~~~~~~~~~~~~~~~v~~~~~~--p~~------------~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.+.. ...+|... ......++.+++. ..+ --.|..-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~-~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTD-KSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCT-TSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCC-CCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1100 11233321 1233444544442 111 13677888999999999976
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-20 Score=226.69 Aligned_cols=318 Identities=8% Similarity=0.044 Sum_probs=215.8
Q ss_pred ceeeecCCCCCCce------eccCCcccceEEeecCCC----CeeEEEEccCCCeEEEEEcC---------CCcEEEEec
Q 001176 313 DEVSFAGVAHTPNV------YSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEV 373 (1132)
Q Consensus 313 ~~~~~~~~g~~~~~------~~~d~~~~~~~~~l~h~~----~V~~~~~spdg~~lla~g~~---------dg~v~iwd~ 373 (1132)
.+++|+|||+.++. +.++...++....+.+.. .|.+++|||||++ |++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEEC
Confidence 35677888754332 233444566666666332 4999999999995 665554 689999999
Q ss_pred CCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCE
Q 001176 374 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV 453 (1132)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v 453 (1132)
.+++.+... .....+.+++|||||++||++. ++.|++|++.+++.... ...++...|
T Consensus 98 ~~g~~~~~~--------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v 154 (719)
T 1z68_A 98 SNGEFVRGN--------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKI 154 (719)
T ss_dssp TTTEECCSS--------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTE
T ss_pred CCCccccce--------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCe
Confidence 998763210 0124688999999999999985 78999999998775432 112333322
Q ss_pred -----------------EEEEEecCCCcEEEEEEcCCC----------------------------------cEEEEECC
Q 001176 454 -----------------NDIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVV 482 (1132)
Q Consensus 454 -----------------~~v~~s~d~~~~~l~s~~~dg----------------------------------~v~vwd~~ 482 (1132)
.+++|||||+ .|++++.|. .|++||+.
T Consensus 155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 155 FNGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp EESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred EcccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 4899999999 677776542 78999999
Q ss_pred CCeEE--------EEecCCCCCeEEEEeeccCCccEEEEEecC----CeEEEEE----cCCCCceEEe----cCCCCeEE
Q 001176 483 AGRKQ--------YTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT 542 (1132)
Q Consensus 483 ~~~~~--------~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd----~~~~~~~~~~----~~~~~~v~ 542 (1132)
+++.. ..+.+|...+.+++|+|+ +.++++.... ..|.+|| ..+++..... ..+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAG 310 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEc
Confidence 88753 123468888999999886 4677764433 2488888 6665544433 34555565
Q ss_pred -----EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEE
Q 001176 543 -----MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFW 612 (1132)
Q Consensus 543 -----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 612 (1132)
.++|+|||+.++....+.++...|++||+.+++ ...+..+.. .+..+.+. +++.++..+.+ +..++|
T Consensus 311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred cccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 789999999877644444566789999988776 344544333 56677777 88888877654 778888
Q ss_pred ECCC--Ce-eEEEEeCC--CCCCCcceEEEcCCCCEEEEEe-CC--CcEEEEEcCCc
Q 001176 613 DMDN--MN-MLTTVDAD--GGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 661 (1132)
Q Consensus 613 d~~~--~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-~d--g~i~iw~~~~~ 661 (1132)
.+.. +. ....+... .+...+..+.|+|+++.++... .. ..+.+|++.++
T Consensus 388 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 388 RISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 7653 32 12333321 1223567899999998777543 32 46889998877
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-18 Score=193.16 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=190.4
Q ss_pred CCCCceeccCCcccce--EEeecCCCCeeEEEEccCCCeEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccc
Q 001176 321 AHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 321 g~~~~~~~~d~~~~~~--~~~l~h~~~V~~~~~spdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
++.+.++.+|..+++. +....+...+..++|||||+ +++++.. ++.|.+|++.+++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------- 79 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------------- 79 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence 4446667776655544 33445778899999999998 6666543 789999999776532110
Q ss_pred cccccCCCCcCeEEEEEcCCCCeEEEEe-CCCeEEEEEecCCCceeeeeeeec---------ccCCEEEEEEecCCCcEE
Q 001176 397 QNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLC 466 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~---------h~~~v~~v~~s~d~~~~~ 466 (1132)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ +
T Consensus 80 ---~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l 154 (347)
T 3hfq_A 80 ---TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--L 154 (347)
T ss_dssp ---EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--E
T ss_pred ---eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--E
Confidence 0223667888999999999998887 689999999974433333323221 122488999999999 7
Q ss_pred EEEEcCCCcEEEEECC-CCeEE--EEecCC-CCCeEEEEeeccCCccEE-EEEecCCeEEEEEcCC--CCce--EEecCC
Q 001176 467 IVTCGDDKMIKVWDVV-AGRKQ--YTFEGH-EAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDY--LGSR--VDYDAP 537 (1132)
Q Consensus 467 l~s~~~dg~v~vwd~~-~~~~~--~~~~~h-~~~v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~~--~~~~--~~~~~~ 537 (1132)
+++...++.|.+||+. +++.. ..+..+ ...+..++|+|++ +++ ++...++.|.+|+++. +... ..+...
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 8888889999999998 55433 222222 3367789998754 644 5566789999999885 2211 122221
Q ss_pred C------CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-C--ceeeeeccccCCceEEEEEeCCCCEEEEEEc-CC
Q 001176 538 G------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF 607 (1132)
Q Consensus 538 ~------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 607 (1132)
. ..+..++|+|||++|+++.. .++.|.+|++.. + +.+..+..+.. .+..++|+|+|++|++++. ++
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCC
Confidence 1 46889999999998866543 367899999873 2 44455554433 5788999999999988875 48
Q ss_pred eEEEE--ECCCCeeE
Q 001176 608 QIKFW--DMDNMNML 620 (1132)
Q Consensus 608 ~i~iw--d~~~~~~~ 620 (1132)
.|.+| |..+++..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 55566654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-19 Score=201.51 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=178.1
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE-
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG- 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la- 421 (1132)
...++.+++++++. ++++|+.|+ ++||+........... .+... ...........+.+.|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 677888777 8998864321100000 00000 00000001123677899999999999999
Q ss_pred ---EEeCCCeEEEEEecCC--------CceeeeeeeecccCCEEEEEEecC-CCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 422 ---VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 422 ---s~~~dg~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 223334456789999999999998 56 899999999999999999988777
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEecCC--
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK-- 560 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~-- 560 (1132)
..+|...|.+++|+|+ |.+|++|+.||.|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 7789999999999886 4899999999999999998 4444444333 23899999999988876654321
Q ss_pred -CCCCeEEEEeCCCCc-----eeeeec-------cccCCceEEEEEeCCCCEEEEEE-cCCeEEEEEC
Q 001176 561 -EGESHLVEWNESEGA-----IKRTYS-------GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDM 614 (1132)
Q Consensus 561 -~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 614 (1132)
+....+++|++...+ ....+. +... ....+..-++.+++++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999997642 111211 1121 222334447777777765 4444666554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-19 Score=212.70 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=176.9
Q ss_pred CCcCeEEEEEcCCCCeEEEEeC-CCeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcC---CCcEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 478 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~---dg~v~v 478 (1132)
+..+|.+++|+|||++||+++. ||++.||++++++.. .+..|. ..+..++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3557999999999999999887 999999999766433 244555 68999999999 5 6777664 455566
Q ss_pred EECCC---CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|.+.. +... .+.... .+...+|+|++++..+++++.++.. +||+.+++.......+. .+++|||||++|++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3332 443332 3446688888775566666555554 99998876554443333 78999999999998
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|++++.++ .|++||+.+++.. .+..+. ..+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChh
Confidence 7764333467999999988764 5555554 789999999999999888888 8999999998877 554443 3566
Q ss_pred eEE--------EcCCCCEEEEEeCCCcEEEEEc
Q 001176 634 RLR--------FNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 634 ~~~--------~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677 9999999999999999999998
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-18 Score=194.28 Aligned_cols=301 Identities=10% Similarity=-0.001 Sum_probs=198.8
Q ss_pred CcccceEEeec-CCCCeeE-----EEEccCCCeEEEEEcCCC--cEEEEecCCCccccccceeeeecccccccccccccC
Q 001176 331 DLTKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 402 (1132)
Q Consensus 331 ~~~~~~~~~l~-h~~~V~~-----~~~spdg~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1132)
..++..+..+. |...... .+|||||+++++++..++ .|.+||+.+++.... ..
T Consensus 17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~ 77 (388)
T 3pe7_A 17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TE 77 (388)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CC
T ss_pred CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------ee
Confidence 34455566666 5555555 899999996555554467 488889888775432 34
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEE--EecCCCcEEEEE-----------
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVT----------- 469 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~--~s~d~~~~~l~s----------- 469 (1132)
++...+..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... ++||++ +++.
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~ 152 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPL 152 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCC
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccc
Confidence 455566678899999999999999999999999987543 2334444454444 489998 5553
Q ss_pred -----------EcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec-cCCccEEEEEecC------CeEEEEEcCCCCce
Q 001176 470 -----------CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSR 531 (1132)
Q Consensus 470 -----------~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~d------g~i~~wd~~~~~~~ 531 (1132)
.+.+..|.+||+.+++.. .+..+...+..++|+| ++ ..|+.++.+ ..|.++|.......
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 153 TDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred cccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 224578999999998754 4445677889999988 54 677766653 36777777655443
Q ss_pred EEecCCC-CeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCCceee--eeccccC--CceEEEEEeCCCCEEEEE--
Q 001176 532 VDYDAPG-NWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKR--TYSGFRK--RSLGVVQFDTTRNRFLAA-- 603 (1132)
Q Consensus 532 ~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~-- 603 (1132)
....... ..+..++|+|||+.|+..+... ..+..|++||+.+++... .+.++.. .......|+|+|+.++..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3323222 3678899999999887655421 112359999999887433 3333100 001123699999888754
Q ss_pred -------EcCCeEEEEECCCCeeEEEEeCCCCC--------CCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 604 -------GDEFQIKFWDMDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 604 -------~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
..+..|++||+.+++........... ..+.+++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 45678999999988764433332210 03678899999998887664 666666654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=207.58 Aligned_cols=379 Identities=10% Similarity=0.027 Sum_probs=239.3
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCc----eEEEEEeCCCCEEEEEEcC---------C
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDE---------F 607 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d---------g 607 (1132)
..+++|+|||++++++ ++.|++||+.+++....+.++.... ...++|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888875 5679999999999887777765321 2347899999999998865 5
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
.+++||+.+++... +..+ ...+...+|||||+.||.+. ++.|++|++.++....-+..++...+.
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~----------- 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY----------- 157 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE-----------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee-----------
Confidence 67799999988653 3332 33689999999999999885 679999999877321111111110000
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcc
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 767 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 767 (1132)
.+... .+|.-.
T Consensus 158 --------------------------------------------------~g~~~--~v~~ee----------------- 168 (740)
T 4a5s_A 158 --------------------------------------------------NGITD--WVYEEE----------------- 168 (740)
T ss_dssp --------------------------------------------------ESBCC--HHHHHH-----------------
T ss_pred --------------------------------------------------cCccc--ccccch-----------------
Confidence 00000 000000
Q ss_pred cccceEEEEEecCCceEEeeccc-ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
--.....++|||||+.|+....| +.+.+|++..... .. . + ...+..+.+.
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~-------~--~-~~~~~~~~yp 219 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES-------L--Q-YPKTVRVPYP 219 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT-------C--S-SCEEEEEECC
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC-------C--C-CCcceeecCC
Confidence 00223568999999999988766 4488887642110 00 0 2 3456677777
Q ss_pred eCCCEEEEeeCCeEEEEECCC---Ce--EEEEee------CCCCCeEEEEEeCCCCCeEEEEeC----CCcEEEEEcccc
Q 001176 847 KNDSYVMSASGGKVSLFNMMT---FK--VMTMFM------SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVD 911 (1132)
Q Consensus 847 ~dg~~la~~sdg~i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~ 911 (1132)
+.|..- ...+|++||+.+ ++ ....+. +|...+..++|+| ++++++.... +..|++||+.++
T Consensus 220 ~~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 220 KAGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp BTTSCC---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred CCcCcC---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 776431 124799999998 73 223333 3777799999999 8887665533 347999999988
Q ss_pred e----eee--ee--ccccCCee-----EEEEcCCCCEEE-EEcC-C--CcEEEEECCCcccccceeeeCCCCCCCCCCCc
Q 001176 912 E----VKT--KL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 974 (1132)
Q Consensus 912 ~----~~~--~l--~~h~~~V~-----~l~~spdg~~l~-s~~~-D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 974 (1132)
+ +.. .+ .+|...|. .++|+|||+.++ ..+. + ..|.+|++.+++. .....+. ..+
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v 366 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEV 366 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCE
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEE
Confidence 7 322 22 45665554 789999999877 6653 3 4588888887652 2222222 234
Q ss_pred eeEEECCCCcEEEE-EeC-----C--eEEEEeCCCCcee-ecCCC-CCCCCCeEEEEEccCCCEEEEEecC---CcEEEE
Q 001176 975 TKVQFHNDQTHLLV-VHE-----S--QISVYDSKLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIGVF 1041 (1132)
Q Consensus 975 ~~~~~s~dg~~l~~-~~d-----~--~v~vwd~~~~~~~-~~~~~-~~h~~~i~~i~~s~dg~~las~~~d---g~i~vw 1041 (1132)
..+. ++|++.++. +.. + .|...++.+.... .+... .+.......+.|||||++++..... ..+.++
T Consensus 367 ~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~ 445 (740)
T 4a5s_A 367 IGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (740)
T ss_dssp EEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence 4443 244776666 433 2 3444454443332 22211 1124578899999999987765433 368889
Q ss_pred eCCCcceeccc
Q 001176 1042 DAETLRFRCRI 1052 (1132)
Q Consensus 1042 d~~~~~~~~~~ 1052 (1132)
+..+++.+..+
T Consensus 446 ~~~~~~~~~~l 456 (740)
T 4a5s_A 446 SSVNDKGLRVL 456 (740)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCcEEEEe
Confidence 98887665443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-18 Score=208.63 Aligned_cols=275 Identities=11% Similarity=0.097 Sum_probs=185.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC-----cCeEEEEEcCCCC
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-----ISVNRCVWGPDGL 418 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~spdg~ 418 (1132)
....+++|+|||+ +++++ |++|++||+.+++.... +.+|. .....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999875431 23333 2334589999999
Q ss_pred eEEEEeCC---------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 419 MLGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 419 ~las~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+|++++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99998876 56779999998643 3567788999999999999 567664 78999999988875432
Q ss_pred -ecCCCCCe-----------------EEEEeeccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCeEEEEEEcCCC
Q 001176 490 -FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 550 (1132)
Q Consensus 490 -~~~h~~~v-----------------~~i~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 550 (1132)
..++...+ .++.|+|+ |+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD--g~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCC--CCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22333323 34788775 488888876655 8888764322110 233456677777766
Q ss_pred CEEEEEecCCCCCCeEEEEeCCC---Cc--eeeeecc------ccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECC
Q 001176 551 TRLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG------FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMD 615 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~ 615 (1132)
... ....|++||+.+ ++ ....+.. +.. .+..++|+|||+.++... .+..|++||+.
T Consensus 223 ~~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 223 AVN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp SCC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred CcC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence 431 234599999998 73 2223332 333 688899999998766643 23479999999
Q ss_pred CCe----eE--EEE--eCCCCCCC---cceEEEcCCCCEEE-EEeC-CC--cEEEEEcCCc
Q 001176 616 NMN----ML--TTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-DN--GIKILANSDG 661 (1132)
Q Consensus 616 ~~~----~~--~~~--~~~~~~~~---v~~~~~s~~~~~l~-~~~~-dg--~i~iw~~~~~ 661 (1132)
+++ +. ..+ ..+..... ....+|+|||+.++ ..+. +| .|.+|+..++
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 886 11 111 22222111 23789999999877 6654 33 5677776654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-18 Score=192.88 Aligned_cols=240 Identities=13% Similarity=0.087 Sum_probs=178.7
Q ss_pred EEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeE-EEEeCCCcEEEEEcccceeeeeec
Q 001176 842 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 842 ~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~ 918 (1132)
.+++++++.++++++ +++|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356778888888887 8999999999999988887543 2578999999 77654 555678999999999998877765
Q ss_pred ccc------CCeeEEEEcCCCCEEEEEcCC------------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEEC
Q 001176 919 GHQ------NRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 980 (1132)
Q Consensus 919 ~h~------~~V~~l~~spdg~~l~s~~~D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 980 (1132)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++........ ... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCC----CcccceeEC
Confidence 332 337899999999999998865 89999999886533221111 111 246789999
Q ss_pred CCCcEEEEEeCCeEEEEeC-CCCceeecCCCC------------------------------------------------
Q 001176 981 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD------------------------------------------------ 1011 (1132)
Q Consensus 981 ~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~------------------------------------------------ 1011 (1132)
|||+ ++++ ++.|.+||. +++....+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 445999999 555544432221
Q ss_pred -----------------CCCCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEE
Q 001176 1012 -----------------ALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1073 (1132)
Q Consensus 1012 -----------------~h~~~i~~i~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1073 (1132)
.+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..+.. + ..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----------~--~~~~~~ 300 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----------D--HTYYCV 300 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----------S--SCCCEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----------C--CCccce
Confidence 0012456778889 99999988 89999999999988766531 1 235689
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCccccc
Q 001176 1074 APHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1105 (1132)
Q Consensus 1074 ~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~ 1105 (1132)
+|+| ++++|++++.++.|.+||+.+++....
T Consensus 301 ~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 301 AFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred EECC-CCCEEEEecCCCeEEEEeccccceeee
Confidence 9999 777788888999999999999884433
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-18 Score=189.91 Aligned_cols=281 Identities=9% Similarity=0.070 Sum_probs=191.1
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccC-CCCcCeEEEEEcCCCCeEE-EEeC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLMLG-VAFS 425 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~la-s~~~ 425 (1132)
+++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||++++ ++..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457888886 788889999999999998876542 11 1222577899999998665 4556
Q ss_pred CCeEEEEEecCCCceeeeeeee-cc-----cCCEEEEEEecCCCcEEEEEEcCC------------CcEEEEECCCCeE-
Q 001176 426 KHIVHLYTYNPTGELRQHLEID-AH-----VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRK- 486 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~-~h-----~~~v~~v~~s~d~~~~~l~s~~~d------------g~v~vwd~~~~~~- 486 (1132)
++.|.+||+.+++.... +. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 89999999998765542 22 12 23478999999999 67777654 8999999988543
Q ss_pred --EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------------------C---e
Q 001176 487 --QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------------N---W 540 (1132)
Q Consensus 487 --~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~ 540 (1132)
+..+. +...+.+++|+|++ . +++++ +.|.+||+.+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 33468888898755 5 44443 449999998887666554332 0 3
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee-eeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCe
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
...+++++++........ ....+..+|..+++... .+... ...+..++|+| ++++++++ ++.|++||+.+++
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL-TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC-CCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 445667665532211000 01112234555444221 11122 22678899999 99998888 8899999999999
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 619 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
.+..+.... .+.+++|+|+|++|++++.++.|.+||..++ +....+.
T Consensus 287 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~ 333 (349)
T 1jmx_B 287 LIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIK 333 (349)
T ss_dssp EEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEE
T ss_pred EEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeee
Confidence 888876432 4689999999999998888999999999988 5555544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-17 Score=182.61 Aligned_cols=298 Identities=10% Similarity=0.085 Sum_probs=185.8
Q ss_pred CCCEEEEEecCCCCCCeEEEEeC--CCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCC--CeeE
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNML 620 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~~ 620 (1132)
+..+++.++....+++.|++|++ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++.. ++..
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~-~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV-ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC-SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC-CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 34456666654445667888866 4565443322233 356779999999999998875 7999998865 4432
Q ss_pred --EEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCc
Q 001176 621 --TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 697 (1132)
Q Consensus 621 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 697 (1132)
.....+. .....+++ ++++|++++ .++.|.+|++.....+ ..+...... .+
T Consensus 91 ~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~------------------~g--- 144 (361)
T 3scy_A 91 LLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL-LPASDVIEF------------------KG--- 144 (361)
T ss_dssp EEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB-CSCSEEEEC------------------CC---
T ss_pred EeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC-cccceeEEc------------------cC---
Confidence 3333222 24566777 888777776 5789999998754221 111000000 00
Q ss_pred cccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEE
Q 001176 698 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 777 (1132)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 777 (1132)
. + . .+...+...+.+++|
T Consensus 145 ----------~---------------------------------~------------~-------~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 145 ----------S---------------------------------G------------P-------DKERQTMPHLHCVRI 162 (361)
T ss_dssp ----------C---------------------------------C------------S-------CTTTCSSCCEEEEEE
T ss_pred ----------C---------------------------------C------------C-------CccccCCCcceEEEE
Confidence 0 0 0 000012345688999
Q ss_pred ecCCceEEeec-ccceeEEEeeccccCCCCCc-cccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe
Q 001176 778 TNSGLSLLALA-SNAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 855 (1132)
Q Consensus 778 s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~ 855 (1132)
+|+|+++++++ .++.+.+|++.........+ .... +........ + ......++|+|||++++++
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~v~ 228 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAYLI 228 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEEEE
Confidence 99999776655 47899999875321000000 0000 000011111 2 4457889999999988777
Q ss_pred e--CCeEEEEECCCCeE--EEEee---CCCCCeEEEEEeCCCCCeEEEEeC--CCcEEEEEcc--cce--eeeeeccccC
Q 001176 856 S--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVR--VDE--VKTKLKGHQN 922 (1132)
Q Consensus 856 s--dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~--~~~--~~~~l~~h~~ 922 (1132)
+ ++.|.+||+.+++. +..+. .+......++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. ..
T Consensus 229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~ 306 (361)
T 3scy_A 229 NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GI 306 (361)
T ss_dssp ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SS
T ss_pred cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC
Confidence 6 78999999987754 33332 2335578999999 8888866665 4899999996 444 4444544 55
Q ss_pred CeeEEEEcCCCCEEEEEc-CCCcEEEEECC
Q 001176 923 RITGLAFSPTLNALVSSG-ADAQLCMWSID 951 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~-~D~~i~iwd~~ 951 (1132)
.+.+++|+|||++|++++ .++.|.+|+++
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 788999999999888877 67899997654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-17 Score=181.85 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=185.0
Q ss_pred EEEEEc----CCCcEEEEecC--CCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----C
Q 001176 358 ILLVGT----NVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----H 427 (1132)
Q Consensus 358 lla~g~----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g 427 (1132)
.+++|+ .++.|.+|.+. +++.... . .. +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~---------------~---~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL---------------S---DA-EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE---------------E---EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe---------------e---cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 456664 45689999774 3433211 0 11 56678889999999999999875 7
Q ss_pred eEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE------ecC--------
Q 001176 428 IVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT------FEG-------- 492 (1132)
Q Consensus 428 ~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~------~~~-------- 492 (1132)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|++.....+.. ..+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999874 334433344445566778888 7773 444445789999999975433221 111
Q ss_pred CCCCeEEEEeeccCCccEEEE-EecCCeEEEEEcCCCCc------e-------EEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 493 HEAPVYSVCPHHKESIQFIFS-TAIDGKIKAWLYDYLGS------R-------VDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s-~s~dg~i~~wd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
+...+.+++|+|++ +++++ ...++.|++|+++.... . .........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 12345789998754 65544 44589999999886542 1 222334556789999999998887763
Q ss_pred CCCCCCeEEEEeCCCCce--eeeecccc--CCceEEEEEeCCCCEEEEEEc--CCeEEEEECC--CCe--eEEEEeCCCC
Q 001176 559 SKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMD--NMN--MLTTVDADGG 628 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 628 (1132)
.++.|.+||+.+++. +..+.... ......++|+|+|++|+++.. ++.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 467899999987754 22232211 124678999999999977765 4899999986 444 3444443 2
Q ss_pred CCCcceEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 001176 629 LPASPRLRFNKEGSLLAVTT-SDNGIKILANS 659 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~ 659 (1132)
..+..++|+|||++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999988887 57899997554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-17 Score=187.61 Aligned_cols=254 Identities=10% Similarity=0.007 Sum_probs=175.0
Q ss_pred cCCCCcCeEE-----EEEcCCCCeEEEEeC-CC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC
Q 001176 401 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472 (1132)
Q Consensus 401 ~~~h~~~V~~-----v~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 472 (1132)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4455555555 889999999999887 66 48888888875443 2345555566789999999 7888888
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001176 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 530 (1132)
Q Consensus 473 dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s----------------------~dg~i~~wd~~~~~~ 530 (1132)
++.|++||+.+++....+..+...+....+..+.++..++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999999998877776666666556554455667776432 347899999988754
Q ss_pred eEEecCCCCeEEEEEEcC-CCCEEEEEecCCC--CCCeEEEEeCCCCceeeeeccccC-CceEEEEEeCCCCEEEEEEc-
Q 001176 531 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 605 (1132)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~- 605 (1132)
. .+..+...+..++|+| ||+.|+.+..... ....|+++|...+.... +..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecC
Confidence 4 3444556789999999 9999988764221 14478899987655433 333332 24777899999998766442
Q ss_pred CC----eEEEEECCCCeeEEEEeCCCCC---CCcceEEEcCCCCEEEEE---------eCCCcEEEEEcCCc
Q 001176 606 EF----QIKFWDMDNMNMLTTVDADGGL---PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 661 (1132)
Q Consensus 606 dg----~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~---------~~dg~i~iw~~~~~ 661 (1132)
++ .|++||+.+++........... .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754332222100 012335799999988754 44668999998876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=187.08 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=170.1
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECC-CCeEEEEeeC-CCCCeEEEEEeCCCCC--eEEEEe-------------C
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMS-PPPAATFLAFHPQDNN--IIAIGM-------------E 899 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~sp~~~~--~lasg~-------------~ 899 (1132)
...+..++|+|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ +++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346788999999999998884499999997 7776543321 113466799999 788 455553 6
Q ss_pred CCcEEEEEcc-cceeeeeec----cccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECC-CcccccceeeeCCCCCCCCCC
Q 001176 900 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 972 (1132)
Q Consensus 900 dg~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 972 (1132)
+|.+.+|++. +++....+. .+...+.+++|+|||++|+++. .++.|++|++. +++......+.... + ..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CC
Confidence 8999999997 466544443 2456799999999999888765 46799999998 65532211121111 0 13
Q ss_pred CceeEEECCCCcEEEEEe--CCeEEEEeCC---CCce---eecCCC----CCCCC------CeEEEE-EccCCCEEEEEe
Q 001176 973 GETKVQFHNDQTHLLVVH--ESQISVYDSK---LECS---RSWSPK----DALPA------PISSAI-YSCDGLLVYAGF 1033 (1132)
Q Consensus 973 ~v~~~~~s~dg~~l~~~~--d~~v~vwd~~---~~~~---~~~~~~----~~h~~------~i~~i~-~s~dg~~las~~ 1033 (1132)
.+..++|+|||++++++. ++.|.+|+++ ++.. ..+... .+|.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998853 6789999762 3321 111111 12222 588999 999999988776
Q ss_pred cCC------cEEEEeCC-CcceecccCCCccccccccCCCCCCcEEEEeCCC--CCCeEEEEeCC-CcEEEEecCCC
Q 001176 1034 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1100 (1132)
Q Consensus 1034 ~dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~D-g~i~vW~~~~~ 1100 (1132)
.+. +|.+|++. +|+...... ....+...+..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~--------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLF--------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE--------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeee--------eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 533 89999996 565432110 00112233456788885 57888888865 89999999765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=179.20 Aligned_cols=247 Identities=10% Similarity=0.072 Sum_probs=172.7
Q ss_pred CcCeEEEEEcCCCCeEEEEeCCCeEEEEEec-CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc------------
Q 001176 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 471 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~------------ 471 (1132)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467899999999999998888 99999997 664332 1111111 236679999999843345553
Q ss_pred -CCCcEEEEECC-CCeEEEEec----CCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCCC
Q 001176 472 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 539 (1132)
Q Consensus 472 -~dg~v~vwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~--~~~--~~~~ 539 (1132)
.++.+.+|++. +++....+. .+...+.+++|+|++ ++++++. .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 566554443 255679999998754 6777665 47899999998 554322 232 2356
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC--CCceee---eec---ccc-C-C-------ceEEEE-EeCCCCEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIKR---TYS---GFR-K-R-------SLGVVQ-FDTTRNRFL 601 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~---~~~---~~~-~-~-------~v~~~~-~~~~~~~l~ 601 (1132)
.+..++|+|||++++++.. .++.|.+|++. +++... .+. ... . . .+..++ |+|+|++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 35679998764 565421 222 110 1 1 377899 999999988
Q ss_pred EEEcC-C-----eEEEEECC-CCeeEEE---EeCCCCCCCcceEEEcC---CCCEEEEEeCC-CcEEEEEcCCc
Q 001176 602 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTSD-NGIKILANSDG 661 (1132)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 661 (1132)
+++.+ . .|.+|++. +++.... ...+. ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76533 2 89999996 5665432 22222 2467899999 89999998864 89999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-16 Score=172.47 Aligned_cols=312 Identities=9% Similarity=0.082 Sum_probs=206.3
Q ss_pred CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec------CCCCCCeEEEEeCCCC
Q 001176 507 SIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEG 574 (1132)
Q Consensus 507 ~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~ 574 (1132)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 335555543 4789999999888877666655444 8999999999998852 1123567999999999
Q ss_pred ceeeeecccc-----CCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCeeEEE-EeCCCCCCCcceEEEcCCC-CEEE
Q 001176 575 AIKRTYSGFR-----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLA 645 (1132)
Q Consensus 575 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~ 645 (1132)
+.+.++.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888776431 124566999999999999874 68999999999998887 65432 2335677765 6778
Q ss_pred EEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcC
Q 001176 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 725 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1132)
+.+.||.+.+|++....+...... ..
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~--~~---------------------------------------------------- 193 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR--SK---------------------------------------------------- 193 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--CC----------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--cc----------------------------------------------------
Confidence 889999999998865212221110 00
Q ss_pred CcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCC
Q 001176 726 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 805 (1132)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 805 (1132)
.+|+... ....+.+++++..++..+.++.+.++|+.......
T Consensus 194 -------------------~~~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~ 235 (361)
T 2oiz_A 194 -------------------QMFSVKD-------------------DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV 235 (361)
T ss_dssp -------------------CCSCTTT-------------------SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE
T ss_pred -------------------ceEcCCC-------------------CceEEEecccCCEEEEEeCCCeEEEEEecCCCcee
Confidence 0011000 00011123444445555556666666653211100
Q ss_pred CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee------------CCeEEEEECCCCeEEEE
Q 001176 806 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTM 873 (1132)
Q Consensus 806 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~ 873 (1132)
...|............ . ......++|+||++.++++. .++|.+||+.+++.+.+
T Consensus 236 ---------~~~~~~~~~~~~~~~~----~-p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 236 ---------DGPWSLLNDEDKAKNW----V-PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp ---------EEEEESCCHHHHHTTC----E-ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred ---------cccccccCcccccccc----c-cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 0001110000000000 0 11122378999988877653 24799999999999999
Q ss_pred eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc--eeeeeeccccCCeeEEEEcCCCC
Q 001176 874 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 874 ~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
+..+. +.+++|+| ++++|+++.. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 302 i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 302 IPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99877 99999999 8888888876 99999999999 99998877788889999999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-16 Score=172.20 Aligned_cols=220 Identities=11% Similarity=0.047 Sum_probs=154.7
Q ss_pred CeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEE-eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-cee
Q 001176 839 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEV 913 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~ 913 (1132)
....++++|||++|+++. +++|.+||+.+++.+.+ +... ....+.+.|.+...+++.+.||.+.+|++.. ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 356789999999998875 47899999999988877 5532 2233667784457788889999999999865 554
Q ss_pred ee------eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC------CCCCCCCCceeEEECC
Q 001176 914 KT------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA------GRQSPLVGETKVQFHN 981 (1132)
Q Consensus 914 ~~------~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~ 981 (1132)
.. .+..+..++ .+.+++++..++..+.++.|.++|+............... +.. ......++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--p~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV--PGGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE--ECCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc--cCCeeEEEEec
Confidence 41 223333332 3445788888888888999999999765422111111100 000 01223479999
Q ss_pred CCcEEEEE-e-----------CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc--
Q 001176 982 DQTHLLVV-H-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL-- 1046 (1132)
Q Consensus 982 dg~~l~~~-~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~-- 1046 (1132)
|+++++++ . .+.|.+||+ +.+.+..+..+ . ..+++|+|||++|++++. +.|.+||..++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 99888874 3 247999999 66666666432 3 899999999999998886 99999999999
Q ss_pred ceecccCCCccccccccCCCCCCcEEEEeCCCCCC
Q 001176 1047 RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 1081 (1132)
+.+..+. .+...+..++++| +|+
T Consensus 338 ~~~~~i~-----------~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 338 KLLRTIE-----------GAAEASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEEET-----------TSCSSEEEEEECC-CSC
T ss_pred eeeEEec-----------cCCCCcEEEEecC-CCC
Confidence 8887753 3456788899999 543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=181.38 Aligned_cols=297 Identities=9% Similarity=-0.036 Sum_probs=191.0
Q ss_pred cccceEEeec-CCCC-----eeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 332 LTKTVVRTLN-QGSN-----VMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~-----V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.++..+..+. +... +.+++|||||++++++...+ ..|.+||+.+++.... ..+
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~ 78 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEG 78 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCS
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecC
Confidence 3444555554 3233 78899999999766665443 3688889888764321 122
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEE-------------------EEEecCCCc
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQ 464 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------v~~s~d~~~ 464 (1132)
+......+.|||||++|+.++.++.|++||+.+++... ....+...... +.|+|+++.
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 22223347899999999999999999999999876433 12223332222 356777773
Q ss_pred EEEEEE-----cCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEE
Q 001176 465 LCIVTC-----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVD 533 (1132)
Q Consensus 465 ~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~ 533 (1132)
++.+ ..+..|.+||+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+........
T Consensus 156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 3332 45678999999988765444 46778899999872 22556555543 3688888865543332
Q ss_pred ecCC-CCeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC-CCCEEEEEE------
Q 001176 534 YDAP-GNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG------ 604 (1132)
Q Consensus 534 ~~~~-~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------ 604 (1132)
.... ...+..++|+|||++|+..+... ...+.|++||+.+++........ ... +.|+| +|+.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC---
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCccee
Confidence 2221 23688899999999887765421 11244999999988754433221 233 88999 999888754
Q ss_pred ----------cCCeEEEEECCCCeeEEEEeCCCCC--------CCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 605 ----------DEFQIKFWDMDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 605 ----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+|.+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999999887754332222110 02567899999998887765 455555543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=177.36 Aligned_cols=318 Identities=13% Similarity=0.038 Sum_probs=193.0
Q ss_pred EEcCCCCceEEecCCCCe-----EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 523 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
.|..++.....+..+... +..++|+|||++|+..... +++..|++||+.+++......+... ....+.|+|+|
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-ccccceECCCC
Confidence 355555555555444332 5678999999998877642 3456799999988876544333221 23337799999
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccccccc
Q 001176 598 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 677 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1132)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+....++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999998876655553321 6667776666555444333321
Q ss_pred CCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCc
Q 001176 678 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 757 (1132)
Q Consensus 678 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 757 (1132)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEecCCcccccceEEEEEecCCceEEee-----cccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCC
Q 001176 758 IKALRLPDSIAASKVVRLIYTNSGLSLLAL-----ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 832 (1132)
Q Consensus 758 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 832 (1132)
...++|+++.++.. ..+..|.+||+. ++..... ..
T Consensus 146 ----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~-~~- 185 (396)
T 3c5m_A 146 ----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVI-HQ- 185 (396)
T ss_dssp ----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEE-EE-
T ss_pred ----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEee-cc-
Confidence 00123333333322 123344444432 2221111 01
Q ss_pred CCCCCCCeeEEEEee-CCCEEEEee-C------CeEEEEECCCCeEEEEeeCC-CCCeEEEEEeCCCCCeEEEEeCC---
Q 001176 833 SKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMED--- 900 (1132)
Q Consensus 833 ~~h~~~~v~~~~~s~-dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~d--- 900 (1132)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++........ ...+..++|+| +++.|+.++.+
T Consensus 186 --~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 186 --D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQ 261 (396)
T ss_dssp --E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTT
T ss_pred --C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCC
Confidence 2 45678899999 888777665 2 36899998766543333321 23578899999 88877776544
Q ss_pred --CcEEEEEcccceeeeeeccccCCeeEEEEcC-CCCEEEEEc----------------CCCcEEEEECCCcccccceee
Q 001176 901 --SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSRFI 961 (1132)
Q Consensus 901 --g~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~~----------------~D~~i~iwd~~~~~~~~~~~~ 961 (1132)
+.|++||+.+++...... .. ... +.|+| ||+++++++ .+..|++||+.+++.. .+
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l 335 (396)
T 3c5m_A 262 TDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KL 335 (396)
T ss_dssp CCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---EE
T ss_pred ccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---Ec
Confidence 459999998886543322 11 233 89999 999888765 3478999999887632 12
Q ss_pred eCCCCCC-----CCCCCceeEEECCCCcEEEEEe--CCeEEEEeC
Q 001176 962 QAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDS 999 (1132)
Q Consensus 962 ~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~ 999 (1132)
....... .....+..++|+|||++|+... ++...+|.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 2111100 0001245678999999988843 344444443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=163.33 Aligned_cols=264 Identities=8% Similarity=0.101 Sum_probs=179.8
Q ss_pred CCCeeEEEEccCCCeEEEEE--------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 343 GSNVMSMDFHPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
-..+..++| ||++++++. +.++.|.+||+.+++... + ..+.+++||
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~S 67 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRIS 67 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEEC
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEEC
Confidence 346778888 888655543 226789999998875421 2 468899999
Q ss_pred CCCCeEEEEeCC---C--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----------------
Q 001176 415 PDGLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----------------- 472 (1132)
Q Consensus 415 pdg~~las~~~d---g--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----------------- 472 (1132)
|||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEccccee
Confidence 999999988654 3 37777887765332 222334 99999999999 5555542
Q ss_pred ----------CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC-------eEEEEEcCCCCceEEec
Q 001176 473 ----------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 473 ----------dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~~ 535 (1132)
...|.+||+.+++.+..+.. . .+..++|+| +| +++++..++ ...+|.++ .+....+.
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~ 214 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMF 214 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEE
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEec
Confidence 25799999999887555554 3 788889986 45 777776542 44555555 33334333
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCC----CCCeEEEEeCCCCceeeeeccccCCceEE-EEEeCCCCEEEEEEcCCeEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIK 610 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~ 610 (1132)
.+ ..+..+ +|||++|+..+.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEE
Confidence 33 444444 999999987764321 245788998 5655444444433 6775 8899 88 888889999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE-EEEEcC
Q 001176 611 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 659 (1132)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iw~~~ 659 (1132)
+| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444332 23688999999 677777777665 777776
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-13 Score=158.10 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=144.0
Q ss_pred cEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCeE
Q 001176 464 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWC 541 (1132)
Q Consensus 464 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v 541 (1132)
.+++++...+++|.++|..+++.+.++... ..+..+.++|+ |.++++++.|+.|.+||+. +.+....+.. +...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 337888899999999999999999888643 35668888774 4899999999999999995 6665555554 4456
Q ss_pred EEEEEc----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc----------cCCceEEEEEeCCCCEEEE-EEcC
Q 001176 542 TMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFLA-AGDE 606 (1132)
Q Consensus 542 ~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~-~~~d 606 (1132)
..++|+ |||++++++.. ..+.+.++|..+.+.+..+... ....+..+.+++++..++. ...+
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred ceeEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 799999 69999998875 4678999999999988876532 1225677888988766555 4577
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCc
Q 001176 607 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 661 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 661 (1132)
|.|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|+.++
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CeEEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 9999999987643332222111 2456889999999887766 4789999998877
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-13 Score=158.87 Aligned_cols=274 Identities=15% Similarity=0.092 Sum_probs=196.9
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec-
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN- 435 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~- 435 (1132)
.++++...++.|.++|..+++.+.+ +. ....+..++|||||+++++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4778888899999999999887653 11 23356789999999999999999999999996
Q ss_pred -CCCceeeeeeeecccCCEEEEEEe----cCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-----------CCCeEE
Q 001176 436 -PTGELRQHLEIDAHVGGVNDIAFA----HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-----------EAPVYS 499 (1132)
Q Consensus 436 -~~~~~~~~~~l~~h~~~v~~v~~s----~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-----------~~~v~~ 499 (1132)
+++.+. ++.... ....++|+ |||+. ++++...+++|.++|..+.+.+.++... ...+..
T Consensus 228 ~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 665444 333322 35789999 69995 4445556799999999999988876521 125777
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+..++.. ..++++...+|.|.++|.......... .........+.|+|+|++++++.. ..+.|.++|..+++.+.
T Consensus 303 i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 303 ILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEE
T ss_pred EEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEE
Confidence 7776653 356777778899999998765433221 123445678899999999988764 36679999999999877
Q ss_pred eecc-ccCC-ceEEE-EEeCCCCEEEEEE--cCCeEEEEECCC-------CeeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 579 TYSG-FRKR-SLGVV-QFDTTRNRFLAAG--DEFQIKFWDMDN-------MNMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 579 ~~~~-~~~~-~v~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
.+.. .... +-... .++|++..+++.+ .++.|.++|..+ .+.+.++...+. .-..+..+|+++++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEE
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEE
Confidence 7654 2110 11112 2688865555444 468999999987 677888876532 2356789999999998
Q ss_pred EeC-------CCcEEEEEcCCc
Q 001176 647 TTS-------DNGIKILANSDG 661 (1132)
Q Consensus 647 ~~~-------dg~i~iw~~~~~ 661 (1132)
... .+.|.++|+.+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCcccCceEEEEECCcc
Confidence 763 358999998654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-14 Score=155.53 Aligned_cols=243 Identities=10% Similarity=0.109 Sum_probs=178.4
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC------CCCCeEEEEEeCCCCCeEEEEeC-CCcEEEEEc
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV 908 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~sp~~~~~lasg~~-dg~v~iwd~ 908 (1132)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.+++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 45688999999999888766 8999999987 666666542 34568999995327777766643 88999999
Q ss_pred ccceeeeeec-cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEE
Q 001176 909 RVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 987 (1132)
Q Consensus 909 ~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 987 (1132)
.+++.+..+. .+...+.+++++|+|+++++...++.|.+|+... +... .+.. .++. ..+..++++++|++++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~~---~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKHL---EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTTC---SSEEEEEECSSSEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCcc---CCcEEEEECCCCCEEE
Confidence 5677666664 3446789999999999998888889999999754 2211 1111 1111 3578999999999776
Q ss_pred EE-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCcceecccCCCccccccccCC
Q 001176 988 VV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVSS 1065 (1132)
Q Consensus 988 ~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1132)
+. .++.|.+||.+++.+..+.. .++...+..++++++|+++++...++ .|.+||.. ++.+..+.. +.
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~---------~~ 248 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES---------KV 248 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE---------SS
T ss_pred EECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc---------cC
Confidence 64 57899999997776665532 23346789999999999888888776 99999964 666555431 12
Q ss_pred CCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1066 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1066 ~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
....+..++++| +++++++ +.|++|++|++....
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 234577899999 7776666 679999999986643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-15 Score=179.72 Aligned_cols=285 Identities=9% Similarity=-0.017 Sum_probs=188.5
Q ss_pred CCCCeeEEEEccCCCeEEEEE--cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE---------E
Q 001176 342 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 410 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 410 (1132)
|...|..++|++++- +++.+ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 778999999998864 45565 5688999999644332221 333444444 5
Q ss_pred EEEc--CCCCe-EEEEeC-CCeEEEEEec--C-CCceeeeeeeec-----ccCCEEEEEEecCCCcEEEEEEcCC-----
Q 001176 411 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 473 (1132)
Q Consensus 411 v~~s--pdg~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~v~~s~d~~~~~l~s~~~d----- 473 (1132)
..|+ |||++ |+.++. +..|.+|++. + +. .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5565 99998 877654 4556666655 2 33 22 2344 667889999999999 67777766
Q ss_pred -----CcEEEEECCC------CeEEEEec-CCCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEcC-CC---C
Q 001176 474 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 529 (1132)
Q Consensus 474 -----g~v~vwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~---~ 529 (1132)
..|++||+.+ ++ ...+. .+...+..++|+|+ |+.|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpD--G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPD--GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTT--SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCC--CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 54 45565 66677888888775 4888877755 379999998 44 2
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC-------ceEEEEEeCCCCEEEE
Q 001176 530 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 602 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 602 (1132)
.......+...+..++|+|||++++++.. ++...|++||+.+++.......+... .+..++|+|++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444678999999999996555532 33447888888777765444433221 1456889999999988
Q ss_pred EEcCCeEEEE--ECCCCeeEEEEeCCCCCCCcceE-EEcCCCCEEEEEeCCC--cEEEEEcCCc
Q 001176 603 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTSDN--GIKILANSDG 661 (1132)
Q Consensus 603 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg--~i~iw~~~~~ 661 (1132)
++. +.+++| |..+++ +..+..+. ..+..+ +++.+.-.+++++.+. .|.++++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 888 999999 655555 55565443 245555 4433333334445554 4555566566
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=178.00 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=178.3
Q ss_pred cccCCCCcCeEEEEEcCCCCeEEEE--eCCCeEEEEEecCCCceeeeeeeecccCCEE---------EEEEe--cCCCcE
Q 001176 399 ALLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQL 465 (1132)
Q Consensus 399 ~~~~~h~~~V~~v~~spdg~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~v~~s--~d~~~~ 465 (1132)
..+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-- 91 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG-- 91 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--
Confidence 3466789999999999887777777 568899999975544433 4556666666 66676 9998
Q ss_pred E-EEEEc-CCCcEEEEECC--CCeEEEEecC-----CCCCeEEEEeeccCCccEEEEEecC----------CeEEEEEcC
Q 001176 466 C-IVTCG-DDKMIKVWDVV--AGRKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYD 526 (1132)
Q Consensus 466 ~-l~s~~-~dg~v~vwd~~--~~~~~~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d----------g~i~~wd~~ 526 (1132)
. |+..+ .+..|.+|++. .......+.. |...+.+++|+|++ +.|++++.+ ..|++||+.
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECC
Confidence 5 55444 35677777765 2034456665 66788899998855 788888877 589999998
Q ss_pred CC-----CceEEec-CCCCeEEEEEEcCCCCEEEEEecCCC----CCCeEEEEeCC-CC---ceeeeeccccCCceEEEE
Q 001176 527 YL-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EG---AIKRTYSGFRKRSLGVVQ 592 (1132)
Q Consensus 527 ~~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~ 592 (1132)
+. +....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+.
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAE 248 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceE
Confidence 72 3344555 55668888999999999998775331 13579999998 56 33333333333 788999
Q ss_pred EeCCCCEEEEEEcCC--eEEEEECCCCeeEEEEeCCCCC------CCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 593 FDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 593 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
|+|||+.+++++.++ .|++||..+++.......+... ..+..++|++++.++++++. +.+++|.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777777 6777787677655443332211 01567899999999999998 99999944
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=160.48 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=183.6
Q ss_pred CCCeeEEEEeeCCCEEEEee-C------------------------CeEEEEECCCCeEEEEee-CCCCCeEEEEEeCCC
Q 001176 837 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 890 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~~ 890 (1132)
-..+.+++++|+|+++++.. + ++|.+||..+++.+..+. ++......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998877 4 379999999898877665 3446789999999 8
Q ss_pred CCeEEEEeCCCcEEEEEcccce-eeeee---------ccccCCeeEEEEcC-CCCEEEEEc-CCCcEEEEECCCcccccc
Q 001176 891 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 891 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~l~s~~-~D~~i~iwd~~~~~~~~~ 958 (1132)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.. ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999976442 44444 34555789999999 888888886 79999999954 332221
Q ss_pred eeeeCCCC--CCCCCCCceeEEECCC-CcEEEE-EeCCeEEEEeCC-CCceeecCCCCCCCCCeEEEEEcc------CCC
Q 001176 959 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1027 (1132)
Q Consensus 959 ~~~~~~~~--~~~~~~~v~~~~~s~d-g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~i~~s~------dg~ 1027 (1132)
........ ..........++++|+ |.++++ ..++.|++|+.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11110000 0001134689999999 555555 357899999995 777766643 34467889999999 333
Q ss_pred EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1028 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
..++...+..|++||+.+++.+..+... .++...+..++++| ++.++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV--------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS--------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC--------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333344568999999999988776421 25567789999999 778999999999999999864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-14 Score=157.35 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=181.4
Q ss_pred CCeeEEEEccCCCeEEEEEcCC------------------------CcEEEEecCCCccccccceeeeeccccccccccc
Q 001176 344 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 399 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1132)
+.|.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4788899999987 66776665 4688888887765431
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC-ceeeeeee---------ecccCCEEEEEEec-CCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 468 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~v~~s~-d~~~~~l~ 468 (1132)
.-.++-..+..++++|+|+++++...++.|++||.++.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012345578999999999998888889999999987542 222 22 23445789999999 676 677
Q ss_pred EEc-CCCcEEEEECCCCeEEEEecC----------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001176 469 TCG-DDKMIKVWDVVAGRKQYTFEG----------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 535 (1132)
Q Consensus 469 s~~-~dg~v~vwd~~~~~~~~~~~~----------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 535 (1132)
+.+ .++.|++|| .+|+.+..+.. +-.....++++++. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 67887777742 22348899998752 4788888899999999998777766663
Q ss_pred CCCCeEEEEEEcCCCCEEEEEec---CCCCCCeEEEEeCCCCceeeeec---cccCCceEEEEEeCCCCEEEEEEcCCeE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 609 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1132)
.....+..++++| +..+.+.+. .......|++||..+++.+..+. ++.. .+..++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 444443321 11235579999999999988874 3333 68899999999777777789999
Q ss_pred EEEECCC
Q 001176 610 KFWDMDN 616 (1132)
Q Consensus 610 ~iwd~~~ 616 (1132)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-10 Score=141.19 Aligned_cols=535 Identities=9% Similarity=0.054 Sum_probs=318.7
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..|.++...++|. +.+ |+. +.+..||..+++... +... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~-lWi-gT~-~Gl~~yd~~~~~f~~------~~~~----------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGR-VWI-GTR-DGLSRYDEEKDIFQN------FFYE----------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSC-EEE-EES-SCEEEEETTTTEEEE------ECCE----------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCC-EEE-EeC-CchheeCCCCCeEEe------cccc----------ccCCCceEEEEEECCCCCEEEEE
Confidence 5799999999998 343 444 458999987654321 1000 00000128889888888766544
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecc-cCC-EEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cCCCCCeEEE
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 500 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~i 500 (1132)
. +-|..||..+++... . ..++ ... |.++...+++. +..++.++-|..||..+++..... ......|.++
T Consensus 149 -~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 4 448899977653211 0 0011 123 88898888886 444665556899998777654321 1234568888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
..... ..|..++.++.+..||..+......... ....|.++...++|...+.. . . -|.+||..+
T Consensus 221 ~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~----~-Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-F----N-DLNIYHEGT 291 (795)
T ss_dssp EEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-S----S-CEEEEETTT
T ss_pred EEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-C----C-hhheEcCCC
Confidence 76543 2455566555688898776543322111 23579999999988866644 2 2 389999887
Q ss_pred Cceeeeecc------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC----CCCCCcceEEEcCCCCE
Q 001176 574 GAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----GGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 574 ~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~ 643 (1132)
++....... .....|.++...++|. +..|+.++-|..|+..+.......... -....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 664432211 1223689999998876 455667777889987665433221111 0123588888888886
Q ss_pred EEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccC
Q 001176 644 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 723 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1132)
|..|+.++.|..|+..++ ... .+......
T Consensus 370 lWiGt~~~Gl~~~~~~~~-~~~-~~~~~~~~------------------------------------------------- 398 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQ-RFT-SYTLQEDE------------------------------------------------- 398 (795)
T ss_dssp EEEEESSSCEEEECTTTC-CEE-EECCC----------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCC-cEE-EEecCCCC-------------------------------------------------
Confidence 455788878888887655 111 11000000
Q ss_pred cCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccC
Q 001176 724 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 803 (1132)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 803 (1132)
.. . ......|.++...++|..|-+++.++.+..|+....+.
T Consensus 399 -------------------------------~~----~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 399 -------------------------------SA----R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp ------------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred -------------------------------cc----c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 00 0 00224578888888887455556655677776432211
Q ss_pred CCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeC------C
Q 001176 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS------P 877 (1132)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~------~ 877 (1132)
..+..... . -+ ...|.++...++|.+.+... +.+.+||..+++....... +
T Consensus 440 ------------~~~~~~~~--------~-l~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 440 ------------ENFNQRNS--------Q-LV-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVV 496 (795)
T ss_dssp ------------EEECTTTS--------C-CS-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred ------------EEeecCCC--------C-cC-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccC
Confidence 00000000 0 02 45789999998888766655 5688999887655332211 2
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec-------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
...|.++...+ ++.+.+ |+. +-|..||..+++. .+. .....|.++...++|.+.++.. . -|..||.
T Consensus 497 ~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~ 569 (795)
T 4a2l_A 497 SKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE 569 (795)
T ss_dssp CCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred CceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence 35689999988 676665 444 5588999887765 221 2345799999999998776554 3 4888998
Q ss_pred CCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCC-CCe--EEEEEccCCC
Q 001176 951 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSCDGL 1027 (1132)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~i--~~i~~s~dg~ 1027 (1132)
.+++... .....+-. ...+.++...++|.+.+.+ ++.+..|+........+....+.. ..+ .++...++|.
T Consensus 570 ~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~ 643 (795)
T 4a2l_A 570 KDKQIKR---YNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQ 643 (795)
T ss_dssp TTTEEEE---ECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSC
T ss_pred CCCcEEE---eCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCe
Confidence 7654221 11112211 1457888889999876665 567888888655555554333322 233 5677788888
Q ss_pred EEEEEecCCcEEEEeCC
Q 001176 1028 LVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~ 1044 (1132)
+++ |+.+| +..++.+
T Consensus 644 l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 644 MYF-GGING-ITTFRPE 658 (795)
T ss_dssp EEE-EETTE-EEEECGG
T ss_pred EEE-ecCCc-eEEEcHH
Confidence 655 55566 4445543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-13 Score=148.14 Aligned_cols=245 Identities=11% Similarity=0.076 Sum_probs=178.5
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeee---ecccCCEEEEEEe-cCCCcEEEEEEcC-CCcEE
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCGD-DKMIK 477 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~v~~v~~s-~d~~~~~l~s~~~-dg~v~ 477 (1132)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+.+++++ +++. ++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4433321110 1344678999995 6665 5555533 88999
Q ss_pred EEECCCCeEEEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 554 (1132)
+|| .+++.+..+.. +...+.+++++++ +.++++...++.|.+||.. +.....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67877777643 4467889999774 4788888888999999965 33333433 3345789999999998776
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
+... ++.|++||. .++.+..+.... ...+..++++++|+.+++...++ .|.+||. +++.+..+..+.....+
T Consensus 180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 6543 677999997 456666665432 12678899999998888777775 9999995 56666666654433346
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987666 67999999987543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-09 Score=136.83 Aligned_cols=587 Identities=10% Similarity=0.066 Sum_probs=338.7
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...|+++.-.++|.. =.|+.+| +..||-.. |+.|...... . ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNM--WFATYDG-VNKYDGYA--------FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSCE--EEEETTE-EEEECSSC--------EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCCE--EEeecCc-CcccCCCc--------eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence 357999999999973 3455555 55666321 2222211000 0 001245799999999887654
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccC----CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-CCC-
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 496 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~- 496 (1132)
|+.+| +..||..+++. . .+..... .|.++...++|. +.+ ++. +-|..||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44566 89999876532 2 1211111 288999888886 344 444 45899998776543211111 112
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
|.++..... + .+..++.++.+..|+..+....... ......|.++...+++.+.+... ..-+.+||..+++
T Consensus 175 i~~i~~d~~--g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQG--D-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEET--T-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCC--C-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 777776543 2 4555666666888987765433221 12345788888888887665442 2228999988765
Q ss_pred eeeeecc------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-----CCCCCcceEEEcCCCCEE
Q 001176 576 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 576 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l 644 (1132)
....... .....|.++...++|...+ |+.+ -|.+||..+++........ -....|.++...++|. |
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-l 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-M 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-E
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-E
Confidence 4332211 1123688998888887554 4444 5889998877654432211 1123688898888887 4
Q ss_pred EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 645 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
..|+.++.|..|+..++ . +..+.....
T Consensus 324 Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp EEEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred EEEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 55777778888876544 1 111110000
Q ss_pred CCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCC
Q 001176 725 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 804 (1132)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 804 (1132)
+.......|.++...++|. |-+++.++-+..|+.....+.
T Consensus 351 ---------------------------------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp ---------------------------------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE
T ss_pred ---------------------------------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE
Confidence 0000234577888888877 444566656777754321110
Q ss_pred CCCccccccccccccCCCcCcccccCC-CCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEee----CCC
Q 001176 805 PSGKATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM----SPP 878 (1132)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~----~~~ 878 (1132)
.+...... .. + -. ...|.+++..++|+.|..|. ++.|..||..+++...... .+.
T Consensus 391 ------------~~~~~~~~-----~~~~-l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 391 ------------SYTLQEDE-----SARG-IG-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp ------------EECCC-----------C-CS-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred ------------EEecCCCC-----cccC-CC-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 00000000 00 0 01 45789999999998444455 6789999998876533321 134
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
..|.++...+ ++.+.+ |+.+ -+.+||..+++...... .....|.++...++|.+.+... + -|..|+..+
T Consensus 452 ~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~ 526 (795)
T 4a2l_A 452 ENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEG 526 (795)
T ss_dssp SCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEET
T ss_pred CeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCC
Confidence 5789999888 676554 4454 58899988776433221 1235799999999998777555 4 488899876
Q ss_pred cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCC-CCCeEEEEEccCCCEEEE
Q 001176 953 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYA 1031 (1132)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~i~~s~dg~~las 1031 (1132)
+.. . ..........+...+.++...++|...+.+.+ .+..||........+....+. ...|.++...++|.+.++
T Consensus 527 ~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~ 602 (795)
T 4a2l_A 527 LDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLS 602 (795)
T ss_dssp TEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred CeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEE
Confidence 543 1 11000000011146788999999987666554 788899855555444332222 346899999999987665
Q ss_pred EecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1032 GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1032 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
+ ++-|..|+..+++.. .+.....++. .....-++...+ +|. |..|+.+| +..++...
T Consensus 603 t--~~Gl~~~~~~~~~~~-~~~~~dGl~~-----~~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 603 T--NRGISCFNPETEKFR-NFTESDGLQS-----NQFNTASYCRTS-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp E--TTEEEEEETTTTEEE-EECGGGTCSC-----SCEEEEEEEECT-TSC-EEEEETTE-EEEECGGG
T ss_pred c--CCceEEEcCCCCcEE-EcCCcCCCcc-----ccCccCceeECC-CCe-EEEecCCc-eEEEcHHH
Confidence 4 356888998876543 3332222221 111113455555 554 55566666 44556543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-13 Score=167.71 Aligned_cols=250 Identities=8% Similarity=0.008 Sum_probs=177.2
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCCC-----eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc-
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 475 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~dg-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~- 475 (1132)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 34556789999999999999876543 899999999875542 222 22367899999999 6777776665
Q ss_pred ---------------EEEEECCCCeE----EEEecCCCCCeEEEEeeccCCccEEEEEec-----CCeEEEEEcCC----
Q 001176 476 ---------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY---- 527 (1132)
Q Consensus 476 ---------------v~vwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~~wd~~~---- 527 (1132)
|++|++.+++. +.....|...+..+.|+|++ .+|+.++. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988762 22333356667888887754 77777664 57899999986
Q ss_pred --CC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--eeeeccccC-CceEEEEEeCCCCEEE
Q 001176 528 --LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFL 601 (1132)
Q Consensus 528 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 601 (1132)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 42 34455555444444 58899998887764333366899999987642 244444433 2577888987777777
Q ss_pred EEEcCCe--EEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCcc
Q 001176 602 AAGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 662 (1132)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1132)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+.|..||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888874 667787778777777765 336788899999876664432 4789999998873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-13 Score=151.26 Aligned_cols=271 Identities=11% Similarity=0.075 Sum_probs=187.5
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..|.++.|+|++.. ++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 45788899998874 55556788888882 222211 33466678999999999988888
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeEEEEec--CCCCCe
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 497 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~--~h~~~v 497 (1132)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876433 1224567899999999998 67776666 689999988877653443 245678
Q ss_pred EEEEeeccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 498 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.+++++++ |.++++... .+.|..||....... .+......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCC--CCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 89999774 466666553 245555655443332 22222345788999999997766542 2567999998
Q ss_pred CC-Cceeee--------eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC----CCCcceEEEc
Q 001176 572 SE-GAIKRT--------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFN 638 (1132)
Q Consensus 572 ~~-~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s 638 (1132)
.+ +..+.. +.++ ..+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred cCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC
Confidence 63 333221 1121 25778999999998887778899999998 5666666654321 1147899999
Q ss_pred CCCCEEEEEeCCC
Q 001176 639 KEGSLLAVTTSDN 651 (1132)
Q Consensus 639 ~~~~~l~~~~~dg 651 (1132)
+|+..|++++.++
T Consensus 289 ~dg~~L~v~~~~g 301 (333)
T 2dg1_A 289 PGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEEECG
T ss_pred CCCCEEEEEeCcc
Confidence 9988777666653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-13 Score=149.64 Aligned_cols=273 Identities=13% Similarity=0.079 Sum_probs=185.3
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..|.+++|++++..++..+.++.++.|.-. .... +.. + ...+.+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g 56 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQG 56 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTS
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCC
Confidence 456778899998888877778888877211 0000 111 2 4557899999999
Q ss_pred CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC----CcEEEEEcccceeeeeec--cccC
Q 001176 850 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQN 922 (1132)
Q Consensus 850 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~ 922 (1132)
++++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9877776 78999999998877665545677899999999 78888777666 689999988776543332 3455
Q ss_pred CeeEEEEcCCCCEEEEEcC------CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeE
Q 001176 923 RITGLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQI 994 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v 994 (1132)
.+.+++++|+|+++++... .+.|..|+..+++... ..... ..+..++|+|||++++++ .++.|
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeE
Confidence 7899999999998887764 2456666655443211 11110 235789999999977664 36899
Q ss_pred EEEeC--CCCceeec-----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCC
Q 001176 995 SVYDS--KLECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1067 (1132)
Q Consensus 995 ~vwd~--~~~~~~~~-----~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1132)
.+||. .+.....+ ....+ ...+..++++++|+++++...++.|.+||.. ++.+..+.... ...+|.
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~-----~~~g~~ 279 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPG-----RDEGHM 279 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTT-----GGGTCS
T ss_pred EEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCC-----Cccccc
Confidence 99998 33333211 11111 1467889999999988888778999999984 66655543110 001333
Q ss_pred CCcEEEEeCCCCCCeEEEEeCC
Q 001176 1068 AHPLVIAPHPSEPNQIALGMSD 1089 (1132)
Q Consensus 1068 ~~v~~~~~~p~~~~~l~s~~~D 1089 (1132)
..+.+++|+| +++.|+.++.+
T Consensus 280 ~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 280 LRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CBCCEEEECT-TSCEEEEEEEC
T ss_pred cCcceEEECC-CCCEEEEEeCc
Confidence 3678899998 66666655555
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=165.88 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=171.2
Q ss_pred CCeeEEEEccCCCeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. . + ....+..++|||||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeCCCE
Confidence 46889999999996554444333 899999999876531 0 1 1123668999999999
Q ss_pred EEEEeCCCe----------------EEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----CCcEE
Q 001176 420 LGVAFSKHI----------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIK 477 (1132)
Q Consensus 420 las~~~dg~----------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----dg~v~ 477 (1132)
|+.++.++. |++|++.++... ........|...+..+.|+|||+ +|+.++. +..|+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEEE
Confidence 999988765 999999886532 11112223556688999999999 4554432 67899
Q ss_pred EEECCC------Ce-EEEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEcCCCCc--eEEecCCCC--eEE
Q 001176 478 VWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLGS--RVDYDAPGN--WCT 542 (1132)
Q Consensus 478 vwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~~--~~~~~~~~~--~v~ 542 (1132)
+||+.+ +. ....+..+...+.. .|++++ ..|+..+. .+.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999986 53 35666667666655 366644 55554443 23699999987652 233333433 788
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCe
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN 618 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~ 618 (1132)
.++|++++.++++... ++...|++||+.+|+.+..+..+.. .+..++++|+++.++... ..+.|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8999877766666654 3345688899878887777777643 788899999987766542 45789999998877
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-12 Score=144.68 Aligned_cols=256 Identities=10% Similarity=0.126 Sum_probs=167.4
Q ss_pred CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 517 DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
++.|.+||+.++.... + ..+..++|||||++|+..+... ++...|++||+.+++......... +..++|+|
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence 6779999998765433 3 4578899999999999876422 134468999998887655444322 88899999
Q ss_pred CCCEEEEEEcC---------------------------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 596 TRNRFLAAGDE---------------------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 596 ~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
+|+.|+.++.+ ..|++||+.+++.+..+.. . .+..++|+||| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEe
Confidence 99999887642 5799999999887455543 1 57899999999 777776
Q ss_pred CCC-------cEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCc
Q 001176 649 SDN-------GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 721 (1132)
Q Consensus 649 ~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1132)
.++ ...+|.+.++ +.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~~--------------------------------------------------------- 210 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-KE--------------------------------------------------------- 210 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-EE---------------------------------------------------------
T ss_pred cccccccccccccEEEeCCC-ce---------------------------------------------------------
Confidence 542 2233332222 10
Q ss_pred cCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc--------ee
Q 001176 722 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA--------VH 793 (1132)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg--------~i 793 (1132)
..+. . + ..+..+ +|||+.|+..+.++ .|
T Consensus 211 -------------------------------------~~l~--~--~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 211 -------------------------------------EKMF--E--K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp -------------------------------------EEEE--E--E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred -------------------------------------EEec--c--C-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence 0000 0 1 122333 89999887776543 33
Q ss_pred EEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE-EEEeeCCCEEEEee-CCeEEEEECCCCeEE
Q 001176 794 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IALSKNDSYVMSAS-GGKVSLFNMMTFKVM 871 (1132)
Q Consensus 794 ~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~-~~~s~dg~~la~~s-dg~i~vwd~~~~~~~ 871 (1132)
.+| + ++.... ...+ + ...+.. ++|+ |+ ++++++ ++.++|| +.+++..
T Consensus 247 ~~~----------------------d--~~~~~~-l~~~--~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 247 YIY----------------------D--GKEVMG-ILDE--V-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp EEE----------------------C--SSCEEE-SSTT--C-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE
T ss_pred EEE----------------------C--CCceEe-cccc--C-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE
Confidence 333 2 222111 1122 3 556775 8999 88 777777 8999999 8766654
Q ss_pred EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcE-EEEEcccceeeeeeccccCCe
Q 001176 872 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV-QIYNVRVDEVKTKLKGHQNRI 924 (1132)
Q Consensus 872 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v-~iwd~~~~~~~~~l~~h~~~V 924 (1132)
. +..+...|.+++|+| .++++++.++.. .||.+. ++ ...+..|...+
T Consensus 296 ~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~ 343 (347)
T 2gop_A 296 P-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI 343 (347)
T ss_dssp E-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred E-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence 4 444577899999987 577777777765 777776 54 45566665543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-13 Score=167.73 Aligned_cols=247 Identities=11% Similarity=-0.034 Sum_probs=168.0
Q ss_pred CCCCcCeEEEEEcCCCCeEEE-----EeCCCeEEEEEecCCCceeeeeeeecccCCE--EEEEEecCCCcEEEEEEcCCC
Q 001176 402 NDAAISVNRCVWGPDGLMLGV-----AFSKHIVHLYTYNPTGELRQHLEIDAHVGGV--NDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las-----~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v--~~v~~s~d~~~~~l~s~~~dg 474 (1132)
.+|...+..++|||||++||. |+.+.+|++||+.+++.+. ..+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccCcccccceEEecCCC--EEEEEEecC
Confidence 356778999999999999994 3445789999999987541 1122222 6899999999 678887776
Q ss_pred c-------------EEEEECCCCe----EEEEecCCCCCeEEEEeeccCCccEEEEEecCC----eEEEEEcCCCCceEE
Q 001176 475 M-------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVD 533 (1132)
Q Consensus 475 ~-------------v~vwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~~~~ 533 (1132)
. |++|++.++. .+.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 6 9999998876 344444566788899998755 7777776665 56666654443 334
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEE
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 610 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 610 (1132)
+..+...+....+ ++|+ ++..+.....++.|++||+.++.. ...+..+....+..++|+ ++..+++...|+..+
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444445555556 6677 555443222468899999987753 333333323357788888 566777788899888
Q ss_pred EEECC-CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCcc
Q 001176 611 FWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 662 (1132)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1132)
+|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.++.
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88654 455555555432 235778889999987774433 4789999998873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-13 Score=143.87 Aligned_cols=241 Identities=7% Similarity=-0.019 Sum_probs=172.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.....+++|+|+|+.+++++..++.|..|+..++ . .. +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-------------------EECCCCCcceeeECCCCcEEE
Confidence 55678899999999877889999999999999876 2 21 233567799999999999888
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEE----c-------------CCCcEEEEECCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTC----G-------------DDKMIKVWDVVA 483 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~----~-------------~dg~v~vwd~~~ 483 (1132)
+...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 877788999999987764322111111 123567899999998 67763 2 13456666654
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCc---eEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
++ ...+..+......++|+|++ ..+++.+.++.|.+|++.. +.. ...+......+..++++++|++.++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 34455667778999997754 6678888889999999973 332 12333344566789999999876665
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 3459999986 777777776554 788889 5888888888765 455666665543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-13 Score=145.76 Aligned_cols=278 Identities=12% Similarity=-0.001 Sum_probs=189.9
Q ss_pred CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeee
Q 001176 364 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 443 (1132)
Q Consensus 364 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~ 443 (1132)
.+++|.+||..+++..... +.. .. -.........+++. +++++++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~--------~n-~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYR--------AN-GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHH--------HH-SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhh--------hc-CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 4789999999998765320 000 00 01122446677774 455566666789999999999887653
Q ss_pred eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC-----CCeEEEEeeccCCccEEEEEe-cC
Q 001176 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA-ID 517 (1132)
Q Consensus 444 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s-~d 517 (1132)
+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 345788999999985 56666579999999999999887776433 14556666 2 224444443 48
Q ss_pred CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC------CCeEEEEeCCCCceeeeeccccCCceEEE
Q 001176 518 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGVV 591 (1132)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 591 (1132)
+.|.+||..+.+....+... .....++++|+|++++++..+.+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988766665543 345688999999977766421100 26899999999988877764333357889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEE----eCCCcEEEEEcCCcceeee
Q 001176 592 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~~~ 666 (1132)
+|+|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +...
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988754 89999998877532111111123578899999 55555555 568899999987 6 4555
Q ss_pred ecc
Q 001176 667 MLE 669 (1132)
Q Consensus 667 ~~~ 669 (1132)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-11 Score=132.88 Aligned_cols=282 Identities=9% Similarity=-0.040 Sum_probs=194.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...+.+++++++|+ ++++...++.|.+||.. ++.... . ...+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------~------------~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------P------------LPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------E------------CSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------c------------CCcccCceeeEEECCCCCEEE
Confidence 446899999999998 56666667899999987 543210 0 112446799999999999888
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-EecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~i 500 (1132)
+...++.|..||.. ++ .... .+......+.++++.++|. ++++...++.|.+||. +++... .+..+...+.++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999976 33 2211 2223455789999999998 7777777889999998 665443 233345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
++.++ +.+.++...++.|..||. ++..... .......+..+++.++|+..++.. ..+.|.+||. +++....
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEF 218 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEE
Confidence 88654 467777777889999998 4443322 333445788999999998666543 2567999998 6664332
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
........+..++++++|+.+++...++.|..||. +++ +..+........+.++++ ++|.+.++.. .+.+..++..
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 11112236889999999986665557889999998 454 334433333346889999 8887666554 5677777766
Q ss_pred Cc
Q 001176 660 DG 661 (1132)
Q Consensus 660 ~~ 661 (1132)
++
T Consensus 295 ~~ 296 (299)
T 2z2n_A 295 KD 296 (299)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-08 Score=124.25 Aligned_cols=595 Identities=12% Similarity=0.098 Sum_probs=337.2
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...|+++.-.++|.. =.|+.+| +..||-.. |+.+..... +... ..-....|.++...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~~--~~~~--~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFL--WFATEEG-LNKFDGTR--------FITYYKEEQ--SSSV--QSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCE--EEEESSC-EEEECSSS--------EEEECCCSS--CSSS--CCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCE--EEccCCc-CccccCCc--------eEEEEcCCC--CCcc--ccccccccceEEEcCCCCEEEE
Confidence 357999999999973 3445555 66676332 222221000 0000 0012346999999888884556
Q ss_pred EeCCCeEEEEEecCCCceeeeee-eec---ccCCEEEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeEEEEecC----
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLE-IDA---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG---- 492 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~-l~~---h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---- 492 (1132)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++-|..+|..+++... +..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCccc
Confidence 77774599999887542211000 000 123688888877 665 4556545568899987776543 321
Q ss_pred --CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 493 --HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 493 --h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
....|.++..... ..|..++.++.+..||..+....... ......|.++...++|.+.+... .
T Consensus 159 ~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~ 230 (781)
T 3v9f_A 159 ALPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K 230 (781)
T ss_dssp TCSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T
T ss_pred CCCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C
Confidence 1345777776443 34555777767888987764332211 11235789999988888766542 2
Q ss_pred CeEEEEeCCCCceeeeecc------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-------CC----
Q 001176 564 SHLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD---- 626 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~---- 626 (1132)
-+.+||..+++....... .....|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 231 -Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 -GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp -EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred -cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 489999877654322111 1223688888887775 5556664668889987765432211 00
Q ss_pred -CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccC
Q 001176 627 -GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705 (1132)
Q Consensus 627 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 705 (1132)
-....|.++...++|. |..|+.++.|..++..++ . +..+......
T Consensus 309 ~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~------------------------------- 354 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPP-T-FHTWSYSPTQ------------------------------- 354 (781)
T ss_dssp SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC-S-CEEEC----C-------------------------------
T ss_pred CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC-c-ceeeccCccc-------------------------------
Confidence 1123578888888886 556777777888876544 1 1111000000
Q ss_pred CCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEE
Q 001176 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 785 (1132)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 785 (1132)
. .+.......|.++...++|. |-
T Consensus 355 ---------------------------------------------~-----------~~~~l~~~~v~~i~~d~~g~-lW 377 (781)
T 3v9f_A 355 ---------------------------------------------M-----------NESSLSNKVVSSVCDDGQGK-LW 377 (781)
T ss_dssp ---------------------------------------------C-----------CSSCCSSSCEEEEEECTTSC-EE
T ss_pred ---------------------------------------------c-----------ccCCCCCcceEEEEEcCCCC-EE
Confidence 0 00000234577888888777 44
Q ss_pred eecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEEC
Q 001176 786 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 865 (1132)
Q Consensus 786 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~ 865 (1132)
.++.++-+..|+...... ..+. . ..... ...|.+++..++|.+.+...++.+..+|.
T Consensus 378 igt~~~Gl~~~~~~~~~~------------~~~~-~---------~~~~~-~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVA------------IYNK-E---------NRELL-SNSVLCSLKDSEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp EEEBSSCEEEEETTEEEE------------ECC---------------CC-CSBEEEEEECTTSCEEEEETTEEEEEECS
T ss_pred EEeCCCcEEEEECCCCeE------------EEcc-C---------CCCCC-CcceEEEEECCCCCEEEEeccCCEEEEcC
Confidence 455455566665432111 0000 0 00002 56789999888888777544678999998
Q ss_pred CCCeEEEEee--CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccc-----cCCeeEEEEcCCCCEEEE
Q 001176 866 MTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVS 938 (1132)
Q Consensus 866 ~~~~~~~~~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s 938 (1132)
.+++...... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 7766433221 1346789999887 666554 555 45889998876543322212 457999999999987775
Q ss_pred EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCC-CCCe
Q 001176 939 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPI 1017 (1132)
Q Consensus 939 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i 1017 (1132)
...+| |..|+..+++... .....+ .+...|.++...++|...+.+.+|-+..||........+....+. ...|
T Consensus 512 t~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i 585 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHI 585 (781)
T ss_dssp ESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCC
T ss_pred EcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceE
Confidence 54455 7788887654211 111111 112567889999999877776655448898854444444322221 3468
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1018 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1018 ~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
.++...++|.+.++ +..| |..++..+++. ..+.....++. ..-..-++...+ +|. |..|+.+| +..++.
T Consensus 586 ~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~-----~~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p 654 (781)
T 3v9f_A 586 RAISEDKNGNIWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQ-----GSFISGCVTKDH-NGL-IYFGSING-LCFFNP 654 (781)
T ss_dssp CEEEECSSSCEEEE-CSSC-EEEEETTTTEE-EEECGGGTCCS-----SCEEEEEEEECT-TSC-EEEEETTE-EEEECS
T ss_pred EEEEECCCCCEEEE-cCCc-eEEEECCCCce-EEecccCCccc-----cccccCceEECC-CCE-EEEECCCc-eEEECh
Confidence 89999999986654 4444 78888886654 23332221221 111122455555 554 55566677 555676
Q ss_pred CCC
Q 001176 1098 SDA 1100 (1132)
Q Consensus 1098 ~~~ 1100 (1132)
..-
T Consensus 655 ~~~ 657 (781)
T 3v9f_A 655 DIA 657 (781)
T ss_dssp CCG
T ss_pred hhc
Confidence 543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-13 Score=142.23 Aligned_cols=252 Identities=12% Similarity=0.054 Sum_probs=186.8
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecccc-CCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V 924 (1132)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +++.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999998776 5789999999 899888 45778999998 899999888653 478
Q ss_pred eEEEEcCCCCEEEEEcC-CCcEEEEECCCcccccceeeeCC-CCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCC
Q 001176 925 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1001 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~ 1001 (1132)
.++.+.++|+++++.+. ++.|..++. +++.+....+... .++. .....+++.++|+++++. .++.|..||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777777776 4443332222111 1111 234567889999999885 689999999988
Q ss_pred CceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC
Q 001176 1002 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1002 ~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 1081 (1132)
+.+..+... ....++.+.++|.++++++.++.|..+|..+|+.+.++.... .+ ......+..++..+ +++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~----~~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE----GVQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB----SCCCSEEEEEEECT-TSC
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC----CccccccccceEcC-CCC
Confidence 777666432 345667888999999999888899999999999988775211 00 01234577888888 778
Q ss_pred eEEEEeCC--------CcEEEEec-CCCcccccCCCCCCCCCCCC
Q 001176 1082 QIALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLPS 1117 (1132)
Q Consensus 1082 ~l~s~~~D--------g~i~vW~~-~~~~~~~~~~~~~~~~~~~~ 1117 (1132)
++++.... +..++.++ .+++-.|......+-|.++.
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 88877421 23355666 57778888877777777664
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-12 Score=141.71 Aligned_cols=237 Identities=13% Similarity=0.051 Sum_probs=169.1
Q ss_pred CCCCcCeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 402 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++|+++|+ ++++...++.|.+||
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQR 96 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEEC
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEEc
Confidence 34556778999999998 7788888999999999886 33 3445677899999999998 777777778999999
Q ss_pred CCCCeEEEEecCC----CCCeEEEEeeccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCCC
Q 001176 481 VVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPGN 539 (1132)
Q Consensus 481 ~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~~~ 539 (1132)
..+++........ ...+..+++++ +|.++++.+. .+.|..++.. .....+.....
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~ 172 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRV 172 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCC
Confidence 9888765433221 23456788876 4577777321 2345555444 44445555566
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCce---eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
....++|+|+|+.+++.+ .++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+||..
T Consensus 173 ~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 778999999999984443 36789999986 5554 3344 2223356779999999866655 8899999986
Q ss_pred CCeeEEEEeCCCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 616 NMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++.+..+..+.. +.+++| .++++.|++++.+ .+.-++..+.
T Consensus 246 -g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 246 -GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 777777765532 789999 5899999988876 3444455443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-12 Score=143.37 Aligned_cols=240 Identities=11% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 345677774 344444444 7999999999999988886 356789999998 676555554899999999999988777
Q ss_pred ecccc-----CCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe
Q 001176 917 LKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 917 l~~h~-----~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 990 (1132)
+.... .....+++ .+++.+++.. .++.|.+||..+++...... . + .....++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT--I--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE--C--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE--c--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567787 4455555544 48899999999877543221 1 1 2346789999999777743
Q ss_pred -C----------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccc
Q 001176 991 -E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058 (1132)
Q Consensus 991 -d----------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1058 (1132)
+ +.|.++|. +++....+.... ......++|+||+++|+++.. .|.+||..+++...... .
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~ 262 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----L 262 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----B
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----e
Confidence 3 68999999 455444443321 246889999999999988765 89999999887642110 1
Q ss_pred cccccCCCCCCcEEEEeCCCCCCeEEEE----eCCCcEEEEecCCCcccc
Q 001176 1059 PTYAVSSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1059 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~----~~Dg~i~vW~~~~~~~~~ 1104 (1132)
+ .....+..++++|+++++.++. ..+++|.+||.. ++..+
T Consensus 263 ~-----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 263 E-----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp C-----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred c-----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 1 1246788999999777777777 678999999998 77444
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=138.37 Aligned_cols=240 Identities=10% Similarity=0.027 Sum_probs=168.0
Q ss_pred CeeEEEEeeCCCEEE-Eee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 839 SAACIALSKNDSYVM-SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999776 434 78999999866543322223345688999999 777666555 88999999876543322
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 995 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~ 995 (1132)
.......+.+++++++|+++++...++.|.+|+..+..... ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 22233568999999999988888888999999765533211 11111 1346789999999866664 468999
Q ss_pred EEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEe
Q 001176 996 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1075 (1132)
Q Consensus 996 vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1075 (1132)
+||..+......... +...+..++++++|.++++...++.|.+|+..+..... +. ..+...+..+++
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP----------FTGLNTPLAVAV 241 (270)
T ss_dssp EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC----------CCSCSCEEEEEE
T ss_pred EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec----------cCCCCCceeEEE
Confidence 999955544333221 13678999999999888877778999999997654322 11 122256889999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCcc
Q 001176 1076 HPSEPNQIALGMSDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1076 ~p~~~~~l~s~~~Dg~i~vW~~~~~~~ 1102 (1132)
+| +++++++...+++|+++++...++
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 99 678999999999999999987663
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.5e-09 Score=128.51 Aligned_cols=541 Identities=10% Similarity=0.064 Sum_probs=311.8
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCeEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 421 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la 421 (1132)
..|.++...++|+. |-+|+.++.+..||..+++... +.... ... ..-....|.++.... +|.+.
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~------~~~~~----~~~--~~l~~~~i~~i~~d~~~~g~lw- 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSV------YQYNP----EDP--QSLITNDVTHITSSVQAGKGLW- 131 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEE------ECCCT----TCS--SSCSCSCEEEEEECSSTTSEEE-
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEe------ecccc----CCC--CCcccCcceEEEecCccCCCEE-
Confidence 46999999998872 3345556579999988764321 10000 000 001234688888887 66644
Q ss_pred EEeCCCeEEEEEecCCCceeeeee--ee-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC------
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLE--ID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG------ 492 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~--l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------ 492 (1132)
.++.++-|..||..+++. ..... .. -....|.++...++|. |..|+.++-|..||..+++...-...
T Consensus 132 i~t~~~gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKF-THYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEE-EEESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeE-EeeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 455344488899876532 21100 00 1134688888888876 45566665688999887764321110
Q ss_pred -CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 493 -HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 493 -h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
....|.++.... ++. |..++.+ -+.+||..+....... ......|.++...++|.+.+... .+
T Consensus 208 l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 135688877644 334 4445555 6888987654332211 12345789999988887655432 12
Q ss_pred eEEEEeCCCCceeeeec-------------cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-------
Q 001176 565 HLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------- 624 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 624 (1132)
-|.++|..++....... +.....|.++...++|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 38889987665322111 11233688898888876 5556667778899887654332211
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccccccc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 704 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 704 (1132)
..-....|.++...++|. |..|+.++.|..|+..++ . +..+....
T Consensus 358 ~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~-------------------------------- 402 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKR-V-AIYNKENR-------------------------------- 402 (781)
T ss_dssp SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEE-E-EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCC-e-EEEccCCC--------------------------------
Confidence 111123578888888776 456776777888887544 1 11110000
Q ss_pred CCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE
Q 001176 705 PTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL 784 (1132)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 784 (1132)
......|.++...++|...
T Consensus 403 -------------------------------------------------------------~~~~~~v~~i~~d~~g~lW 421 (781)
T 3v9f_A 403 -------------------------------------------------------------ELLSNSVLCSLKDSEGNLW 421 (781)
T ss_dssp --------------------------------------------------------------CCCSBEEEEEECTTSCEE
T ss_pred -------------------------------------------------------------CCCCcceEEEEECCCCCEE
Confidence 0023457778777777744
Q ss_pred EeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEE
Q 001176 785 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFN 864 (1132)
Q Consensus 785 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd 864 (1132)
+ ++.++.+..++.. ++......... .. ...|.++...++|.+.+... +.|..||
T Consensus 422 i-gt~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 422 F-GTYLGNISYYNTR----------------------LKKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp E-EETTEEEEEECSS----------------------SCEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred E-EeccCCEEEEcCC----------------------CCcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 4 5554456666432 22111110000 02 56789999888887665544 6799999
Q ss_pred CCCCeEEEEeeCC-----CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc---ccCCeeEEEEcCCCCEE
Q 001176 865 MMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNAL 936 (1132)
Q Consensus 865 ~~~~~~~~~~~~~-----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l 936 (1132)
..+++........ ...|.++...+ ++.+.+ |+.++-|..||..+++....... ....|.++...++|.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred CCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence 8876543332222 35789999988 676654 55544588888776653332111 23568999999999877
Q ss_pred EEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCC-
Q 001176 937 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA- 1015 (1132)
Q Consensus 937 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~- 1015 (1132)
++.. +|.|..||..+++.. ......+-. ...+.++...++|.+.+.+. +.+..++........+....+...
T Consensus 554 i~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~~~~~dGl~~~ 626 (781)
T 3v9f_A 554 LATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYTYDHSNNIPQG 626 (781)
T ss_dssp EEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEEECGGGTCCSS
T ss_pred EEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEcC-CceEEEECCCCceEEecccCCcccc
Confidence 7655 665488888765421 111112211 13577888899998766654 447778886555555543332222
Q ss_pred --CeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 1016 --PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1016 --~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
...++...+||++++ |+.+| +..++.+.
T Consensus 627 ~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred ccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 235677788888655 56577 55566553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-11 Score=131.06 Aligned_cols=281 Identities=9% Similarity=0.064 Sum_probs=191.8
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
+...+.++++.++|...++...++.|.+|+.. +......... + ...+.++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECC
Confidence 44678999999999977776667888888642 2211111111 2 45688999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEE-EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-eccccCCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V 924 (1132)
+|.++++.. ++.|..||.. ++.. ..+......+.++++++ +++++++...++.|.+||. +++.... ...+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888776 7889999986 3331 22223456789999999 7888887777889999998 5554332 33345678
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
.++++.++|+.+++...++.|..||. +++... ..... . ...+..++++++|++.++. .++.|.+||.++.
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPT-P---ASGPVGITKGNDDALWFVEIIGNKIGRITTSGE- 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSS-T---TCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCC-C---CCcceeEEECCCCCEEEEccCCceEEEECCCCc-
Confidence 99999999998888887889999998 544321 11111 1 1356789999999976664 4788999999443
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
...+.. ..+...+.+++++++|+++++...++.|..||. +++. ..+.. ..+...+.++++ + ++++.
T Consensus 215 ~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~---------~~~~~~~~~i~~-~-~g~l~ 280 (299)
T 2z2n_A 215 ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPI---------QIKSAEPHGICF-D-GETIW 280 (299)
T ss_dssp EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEEC---------SSSSCCEEEEEE-C-SSCEE
T ss_pred EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeC---------CCCCCccceEEe-c-CCCEE
Confidence 333311 123567899999999997776667899999998 4543 22211 123356788888 6 77766
Q ss_pred EEEeCCCcEEEEecCCCc
Q 001176 1084 ALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++.+ .+.|..++..+.+
T Consensus 281 v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 281 FAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEET-TTEEEEEEEC---
T ss_pred EEec-CCcEEEEEcCccc
Confidence 6654 6778778876643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-13 Score=162.75 Aligned_cols=248 Identities=8% Similarity=-0.088 Sum_probs=163.3
Q ss_pred CCCCeeEEEEccCCCeEEEEE----cCCCcEEEEecCCCccc-cccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g----~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
|...+.+++|||||++++++. +.+..|++||+.+++.+ .. . +.+. ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEecC
Confidence 344799999999999655443 33468999999998764 21 0 1111 1267899999
Q ss_pred CCeEEEEeCCCe-------------EEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC----cEEE
Q 001176 417 GLMLGVAFSKHI-------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKV 478 (1132)
Q Consensus 417 g~~las~~~dg~-------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg----~v~v 478 (1132)
|+.|+.++.|.. |++|++.++... ........|...+..+.|+|||+. |+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999887532 122233345668899999999994 55554444 6777
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCeEEEEEEcCCCC
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGT 551 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~ 551 (1132)
||..+++ ...+..+...+....+ ++ +.+++.+. .++.|.+||+.++.. ...+..+ ...+..++++ ++.
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~--g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WK--DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ET--TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cC--CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 7765554 3445555556666655 33 34444444 358899999987653 3333333 4568888888 566
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCee
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 619 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1132)
++++... ++...|+++++ +++....+..+....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 332 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLK--DATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEE--TTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6666654 22334444554 35556666655344677788899998776433 457899999998774
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-12 Score=135.40 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=176.7
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC-cCeEEEEEcCCCCeEEEEeCCCeEEEEEecC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~las~~~dg~i~iwd~~~ 436 (1132)
+|++++.++.|.+||.++|+.+-+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 799999999999999999986542 22233 4688999999999888 35778999999 6
Q ss_pred CCceeeeeeeecc-cCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeEEEEecC------CCCCeEEEEeeccCCc
Q 001176 437 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 508 (1132)
Q Consensus 437 ~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~ 508 (1132)
++.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++ ..+|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 776553 3333 34688999999999 7777776 778888884 8888776642 2123334444 3466
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC---
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 585 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 585 (1132)
.++++...++.|..||.+ ++.+..+... ..+.++...++|+.++++.. +++|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999998 7777777654 34556788899999988753 56799999999999988864321
Q ss_pred --CceEEEEEeCCCCEEEEEEcC--------CeEEEEEC-CCCeeEEEEeCCCCCCCcceEE
Q 001176 586 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 586 --~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136778888999888776421 23345555 4677777776665555565543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-12 Score=136.16 Aligned_cols=240 Identities=8% Similarity=-0.062 Sum_probs=168.1
Q ss_pred CeeEEEEccCCCeEEE-EEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 345 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
...+++++|+|+ +++ +.+.++.|.+|+..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 666 556789999999765542210 11233567889999999966666
Q ss_pred eCCCeEEEEEecCCCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
. ++.|.+||..+..... +. .....+.+++++++|+ ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654321 21 2335789999999998 7777777889999986655443322233346788888
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
+++ +.++++...++.|.+||................+..++++++|..+++.. .++.|.+||............
T Consensus 158 ~~~--g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eCC--CCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 764 46777777789999999876554433333336788999999996666553 366799999876544332222
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+. ..+..++++++|+.+++...++.|++++....+
T Consensus 232 ~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 GL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 22 268889999999877777889999999987654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-11 Score=132.73 Aligned_cols=279 Identities=9% Similarity=-0.018 Sum_probs=183.7
Q ss_pred EEccCCCeEEEEEc-CCC---cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe-
Q 001176 350 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 424 (1132)
Q Consensus 350 ~~spdg~~lla~g~-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~- 424 (1132)
...|++++++++-. ... .|.++|..+++.+.. +.....+ .+++||||++++++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577765444332 222 889999998876532 1112223 899999999998886
Q ss_pred ---------CCCeEEEEEecCCCceeeeeeee--cc---cCCEEEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeEEE
Q 001176 425 ---------SKHIVHLYTYNPTGELRQHLEID--AH---VGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 425 ---------~dg~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~v~~s~d~~~~~l~s~~~--dg~v~vwd~~~~~~~~ 488 (1132)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.++. ++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876554321 11 00 12345899999999 5665553 57899999 9999887
Q ss_pred E-ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCe-EEEEEEcCCCCEEEEEecCCC
Q 001176 489 T-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 489 ~-~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
+ +... .. +.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 6422 21 33444443 46677888999999999 665542221 11111 233456676665544432
Q ss_pred CCCeEEEEeCCCCc--eeeeeccc---------cCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeeE
Q 001176 562 GESHLVEWNESEGA--IKRTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNML 620 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 620 (1132)
.+.+.+.|...+. .+..+... .......+.++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4579999987543 22222211 0112344789999998888653 358999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeee
Q 001176 621 TTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRM 667 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 667 (1132)
..+.... ...+++|+|||+ +++++. .++.|.+||..++ +..+.
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 9987543 468999999999 777776 5899999999998 44444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-11 Score=134.49 Aligned_cols=286 Identities=13% Similarity=0.116 Sum_probs=184.6
Q ss_pred EEEcCCCCEEEEEecC-CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----------cCCeEEEE
Q 001176 544 MAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFW 612 (1132)
Q Consensus 544 ~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 612 (1132)
....|+++.+++.... ...++.|.++|..+++.+.++..... + . ++++|||++++++. .++.|.+|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456899998887541 11256899999999999998876554 3 4 99999999888865 36789999
Q ss_pred ECCCCeeEEEEeCCCC-----CCCcceEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeeeeccccccccccCCCCCCCC
Q 001176 613 DMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 685 (1132)
Q Consensus 613 d~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1132)
|..+++.+..+....+ ......++|+|||++++++.. ++.|.++|+.++ +....+....
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v~g------------- 180 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPD------------- 180 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS-------------
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEECCC-------------
Confidence 9999999998865321 114578999999999998864 689999999988 5444432100
Q ss_pred CcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCC
Q 001176 686 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 765 (1132)
Q Consensus 686 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 765 (1132)
...++..
T Consensus 181 ---------------------------------------------------------~~~~~P~---------------- 187 (386)
T 3sjl_D 181 ---------------------------------------------------------CYHIFPT---------------- 187 (386)
T ss_dssp ---------------------------------------------------------EEEEEEE----------------
T ss_pred ---------------------------------------------------------cceeecC----------------
Confidence 0000000
Q ss_pred cccccceEEEEEecCCceEEeeccc-ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCee-EE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CI 843 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~-~~ 843 (1132)
+.-.-++.++||+.++....+ +.+.. .. . ...++. ...+. ..
T Consensus 188 ----g~~~~~~~~~DG~~~~v~~~~~g~v~~--~~--------------~-~~~~~~---------------~~~~~~~~ 231 (386)
T 3sjl_D 188 ----APDTFFMHCRDGSLAKVAFGTEGTPEI--TH--------------T-EVFHPE---------------DEFLINHP 231 (386)
T ss_dssp ----ETTEEEEEETTSCEEEEECCSSSCCEE--EE--------------C-CCCSCT---------------TSCBCSCC
T ss_pred ----CCceeEEECCCCCEEEEECCCCCeEEE--ee--------------c-ceeccc---------------cccccccc
Confidence 000112444555544433322 32210 00 0 011111 11121 23
Q ss_pred EEe-eCCCEEEEeeCCeEEEEECCCCe--EEEEee---------C-CCCCeEEEEEeCCCCCeEEEEeC----------C
Q 001176 844 ALS-KNDSYVMSASGGKVSLFNMMTFK--VMTMFM---------S-PPPAATFLAFHPQDNNIIAIGME----------D 900 (1132)
Q Consensus 844 ~~s-~dg~~la~~sdg~i~vwd~~~~~--~~~~~~---------~-~~~~i~~l~~sp~~~~~lasg~~----------d 900 (1132)
+|. ++|+++.+..+|+|.+.|+.+.. ....+. + ..+....+++++ +++.+.+... .
T Consensus 232 ~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 232 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCE
T ss_pred eeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCC
Confidence 554 68877776668999999997654 333332 0 123445688899 6666665532 2
Q ss_pred CcEEEEEcccceeeeeeccccCCeeEEEEcCCCC-EEEE-EcCCCcEEEEECCCccccc
Q 001176 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVS-SGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 901 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s-~~~D~~i~iwd~~~~~~~~ 957 (1132)
..|.++|+.+++.+.++..- .++++|++++|++ +|++ ...++.|.++|..+++.+.
T Consensus 311 ~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 57999999999999887632 3688999999997 6555 5568999999999987544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-12 Score=137.41 Aligned_cols=283 Identities=12% Similarity=0.135 Sum_probs=189.7
Q ss_pred EEEccCCCeEEEEEcC----CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 349 MDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
....|++++++++-.. ++.|.+.|..+++.+.+ +.....+ . +++||||+++++++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEc
Confidence 4557888865555443 68999999999887653 1112223 3 99999999888775
Q ss_pred ----------CCCeEEEEEecCCCceeeeeeeec-----ccCCEEEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeEE
Q 001176 425 ----------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 425 ----------~dg~i~iwd~~~~~~~~~~~~l~~-----h~~~v~~v~~s~d~~~~~l~s~~--~dg~v~vwd~~~~~~~ 487 (1132)
.++.|.+||..+.+.+.... +.. ....-..++|+|||+ +++.+. .++.|.++|+.+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEE
Confidence 36789999999987665432 211 012456799999999 455554 3789999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEe----cCCCCeE-EEEEE-cCCCCEEEEEecCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDY----DAPGNWC-TMMAY-SADGTRLFSCGTSK 560 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~----~~~~~~v-~~~~~-s~~~~~l~~~~~~~ 560 (1132)
.++.-.. ... +.|.+. ..+++.+.||.+.+.++...... ... ......+ ....| .++|++++...
T Consensus 174 ~tI~v~g--~~~--~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPD--CYH--IFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCS--EEE--EEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCC--cce--eecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 8885321 111 223332 56778889999999998763332 211 1111222 12355 46786655432
Q ss_pred CCCCeEEEEeCCCCc--eeeeec---------cccCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCee
Q 001176 561 EGESHLVEWNESEGA--IKRTYS---------GFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNM 619 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~ 619 (1132)
++.+++.|..++. ....+. +........+++++++++++.... .+.|.+.|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 5679999987654 333332 111112334778999998888643 25799999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeeecc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
+..+.... .+..+++++|++ +|+++. .++.|.++|..++ +..+.+.
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~ 371 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 371 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEec
Confidence 99987542 578999999997 666654 4899999999998 5665554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-12 Score=158.06 Aligned_cols=247 Identities=10% Similarity=0.032 Sum_probs=163.5
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCC-----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 475 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~-- 475 (1132)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999987654 4699999999876542 112222467899999 7 5666655543
Q ss_pred ------------EEEEECCCCe----EEEEecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001176 476 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 532 (1132)
Q Consensus 476 ------------v~vwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~--~~~~ 532 (1132)
|++|++.++. .+.....+...+.++.|+|+ |++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD--GRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC--CCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 8999998765 23333334446888888764 47777777544 8999999876 3134
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 533 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 533 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
.+..+...+.... +|+|+.|+..+.....+..|++||+.++. ....+..+....+..++++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 4444444444443 48999988877543346789999998752 3333333333356677777 4556677788888777
Q ss_pred EECC-CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe----CCCcEEEEEcCCc
Q 001176 612 WDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 661 (1132)
Q Consensus 612 wd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~ 661 (1132)
|.+. +++....+..+. ...+..+.++|+++.++... ..++|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455566665432 23678889999988666432 2478999999887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-10 Score=125.14 Aligned_cols=278 Identities=9% Similarity=-0.016 Sum_probs=191.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....+.+++++++|+ +.++...++.|.+||.. ++... +. +..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~------~~------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE------FE------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE------EE------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE------EE------------CCCCCCcceeEEECCCCCEEE
Confidence 346899999999998 67766678999999987 54321 00 122346789999999999888
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-EecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~i 500 (1132)
+...++.|..||.. ++... ..+......+.++++.++|. ++++...++.|..+|.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 44321 12333446789999999998 67777778899999987 65542 333345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
++.++ +.+.++...++.|..||. ++.... ........+..+++.++|+..++.. ..+.|.+||. +++....
T Consensus 152 ~~d~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSD--NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCC--CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 88764 466776666889999988 333322 2223445788999999997766553 2567999998 5554332
Q ss_pred -eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 580 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 580 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..... ..+.+++++++|+.+++...++.|..|+. +++.. .+........+.++++.++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPN-ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCC-CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222 26788999999986666556789999998 44433 333332234688999999998665544 4 6666664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-11 Score=133.78 Aligned_cols=239 Identities=12% Similarity=0.025 Sum_probs=162.9
Q ss_pred EEEEeeCCCEEEEee-----------CCeEEEEECCCCeEEEEeeCC-------CCCeEEEEEeCCCCCeEEEEeC--CC
Q 001176 842 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 901 (1132)
Q Consensus 842 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~~~~~lasg~~--dg 901 (1132)
.+++||||++++++. ++.|.+||..+++.+.++... ......++|+| +|++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998884 467999999998888776532 12355899999 8888888764 57
Q ss_pred cEEEEEcccceeeee-eccccCCeeEEEEcCCC-CEEEEEcCCCcEEEEECCCcccccceee-eCCCCCCCCCCCceeEE
Q 001176 902 SVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFI-QAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 902 ~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 978 (1132)
.|.++| .+++.+.. +.... ++.+.|++ +.+++.+.||.+.+++. +++....... ....+.. .-.....
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99988877 65321 24555665 45667788999999999 7654321110 0001110 0112345
Q ss_pred ECCCCcE-EEEEeCCeEEEEeCCCCc---eeecCCCC-------CCCCCeEEEEEccCCCEEEEEec----------CCc
Q 001176 979 FHNDQTH-LLVVHESQISVYDSKLEC---SRSWSPKD-------ALPAPISSAIYSCDGLLVYAGFC----------DGA 1037 (1132)
Q Consensus 979 ~s~dg~~-l~~~~d~~v~vwd~~~~~---~~~~~~~~-------~h~~~i~~i~~s~dg~~las~~~----------dg~ 1037 (1132)
+.+++.. ++++.++.+.+.|+.... +..+.... ........++++||++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6666554 444667889999983321 12221100 01223445889999998887653 357
Q ss_pred EEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC-eEEEEe-CCCcEEEEecCCCccc
Q 001176 1038 IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAELK 1103 (1132)
Q Consensus 1038 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~-~Dg~i~vW~~~~~~~~ 1103 (1132)
|.++|+.+++.+.++... ..+..++|+| |++ +++++. .++.|.+||+.+++..
T Consensus 300 V~VID~~t~~vv~~i~~g------------~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG------------HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCEEEEEEECC------------CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999999999998887422 2467899999 667 777777 5999999999998843
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-10 Score=121.40 Aligned_cols=278 Identities=8% Similarity=0.037 Sum_probs=188.7
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
....+.++++.++|...++...++.|.+|+.. +......+.. + ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECC
Confidence 34578899999999977777777888888642 1111111111 2 35688999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEE-EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee-eeccccCCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V 924 (1132)
+|.+.++.. ++.|..||.. ++... ........+.++++++ +++++++...++.|..||.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999877766 6889999988 55432 2222446789999999 78888777668899999987 55442 233345678
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
.++++.++|+.+++...++.|..|+. +++... ... ... ...+..++++++|.+.++. ..+.|.+|+.++..
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~-~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 220 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL-PTN---AAAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC-SST---TCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC-CCC---CCCcceEEECCCCCEEEEccCCCEEEEEcCCCcE
Confidence 99999999998887777888999998 443221 111 111 1356899999999877765 45689999985544
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
...... .+...+.+++++++|++.++...++.|..||. +++.. .+. .+ .....+.+++.++ ++++.
T Consensus 221 ~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~-----~~~~~~~~i~~~~-~g~l~ 286 (300)
T 2qc5_A 221 SEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQ-----TENAEPHGITFGK-DGSVW 286 (300)
T ss_dssp EEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CC-----STTCCCCCEEECT-TSCEE
T ss_pred EEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CC-----ccCCccceeEeCC-CCCEE
Confidence 332222 22567899999999997777666799999998 45433 221 11 1234567788888 66666
Q ss_pred EEEeCCCcEEEEecC
Q 001176 1084 ALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~ 1098 (1132)
++.. . .|..++..
T Consensus 287 v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 287 FALK-C-KIGKLNLN 299 (300)
T ss_dssp EECS-S-EEEEEEEC
T ss_pred EEcc-C-ceEEeCCC
Confidence 6554 4 77766653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-11 Score=131.99 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=139.9
Q ss_pred eEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK- 916 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~- 916 (1132)
..++|+|||++++++. +++|.+.|+.+++.+.++..... ....|.+.+.+++.+.||.+.+.+..+++...+
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578899999988875 47899999999999888874321 334442446666777888888888866654422
Q ss_pred ---eccccCCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC----CCCCCceeEEECCCCcEEEE
Q 001176 917 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ----SPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 917 ---l~~h~~~V-~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~ 988 (1132)
+.....++ ..+.|++++..++..+..+.|.+.|+.+................ ........++++||++++++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112221 23578999988887788899999999764421111111100000 00012234789999998888
Q ss_pred Ee-----------CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCcceeccc
Q 001176 989 VH-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 989 ~~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~-~las~~-~dg~i~vwd~~~~~~~~~~ 1052 (1132)
.. ++.|.++|. +.+.+..+.. ......++|+|||+ ++++.. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999 7777777654 23588999999999 888888 5999999999999999886
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-11 Score=149.67 Aligned_cols=246 Identities=8% Similarity=-0.034 Sum_probs=158.6
Q ss_pred CCeeEEEEccCCCeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|||| +.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence 36889999999996555544333 599999999876431 001112357899999 99
Q ss_pred EEEEeCCCe--------------EEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----CCcEEEE
Q 001176 420 LGVAFSKHI--------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVW 479 (1132)
Q Consensus 420 las~~~dg~--------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----dg~v~vw 479 (1132)
|+.++.++. |++|++.++... ........|...+..+.|+|||+ +|+..+. ...|++|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEE
Confidence 998876554 889998776532 11112223334688999999999 4554443 3489999
Q ss_pred ECCCC--eEEEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEcCCC--CceEEecCCCCeEEEEEEcCCCC
Q 001176 480 DVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT 551 (1132)
Q Consensus 480 d~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 551 (1132)
|+.++ +....+..+...+.... .++ |..|+..+. ++.|.+||+.+. .....+..+...+..++++ ++.
T Consensus 300 d~~~~~~~~~~~l~~~~~~~~~~~-~~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~ 375 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPDLKAQWDFV-DGV--GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR 375 (741)
T ss_dssp EEETTEECCCEEEECSSSSCEEEE-EEE--TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred ECCCCCCcccEEecCCCCceEEEE-ecc--CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence 99887 31455655655555553 344 366666655 345999998874 2233444445567777877 445
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE-E---cCCeEEEEECCCCee
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNMNM 619 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~ 619 (1132)
.+++... ++...|+++++ +++....+.......+..++++|+++.++.. + ..+.|++||+.+++.
T Consensus 376 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 376 LFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5555543 23344555565 3555666655434468889999998766643 2 457899999998873
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-11 Score=131.78 Aligned_cols=279 Identities=10% Similarity=0.088 Sum_probs=188.7
Q ss_pred cCCCeEEEEEcCC----CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe----
Q 001176 353 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 424 (1132)
Q Consensus 353 pdg~~lla~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~---- 424 (1132)
|++++++++...+ +.|.+.|..+++.+.+ + .--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~--I-----------------~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM--T-----------------DGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE--E-----------------EECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE--E-----------------ECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666555555444 7999999999887653 1 111224 799999999888876
Q ss_pred ------CCCeEEEEEecCCCceeeeeeee--c---ccCCEEEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeEEEEec
Q 001176 425 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 425 ------~dg~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~v~~s~d~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~ 491 (1132)
.++.|.++|..+++.+.... +. . .......++|+|||+ +++.+.. ++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665432 21 0 112346789999999 5555543 6899999999999988876
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCe-EEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
--. . ....|.+. ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334333 5667778889888888844433321 1111111 123567899888777653 5679
Q ss_pred EEEeCCCCcee--eeeccc---------cCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeeEEEEeC
Q 001176 567 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 567 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (1132)
.+.|...+... ..+... .......++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998654421 111100 0001223689999988877642 35799999999999999875
Q ss_pred CCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeeec
Q 001176 626 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 626 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1132)
.. ....++|+|||+ ++++.. .++.|.++|..++ +..+.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 43 368999999999 888888 5899999999998 555543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-10 Score=126.48 Aligned_cols=243 Identities=12% Similarity=0.051 Sum_probs=164.9
Q ss_pred CcCeEEEEEcCCCCeEEE-------EeCCCeEEEEEecCCCceeeee-eeecccCCEEEEEEecC-CCcEEEEEEcCCCc
Q 001176 405 AISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKM 475 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las-------~~~dg~i~iwd~~~~~~~~~~~-~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~ 475 (1132)
-....+++|+++|.++++ +..++.|.+||..+++...... ...++...+.+++++++ ++ ++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCC
Confidence 345679999999988887 5678899999988776432110 01125567999999999 65 444444 447
Q ss_pred EEEEECCCCeEEEE-ecC----CCCCeEEEEeeccCCccEEEEEecC---------------CeEEEEEcCCCCceEEec
Q 001176 476 IKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 476 v~vwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------------g~i~~wd~~~~~~~~~~~ 535 (1132)
|.+||.. ++.... ... ....+.+++++++ |.++++...+ +.|..||.. + ....+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEEEec
Confidence 9999988 765433 221 1235788888764 4677766655 567777655 3 333222
Q ss_pred CCCCeEEEEEEc----CCCCEEEEEecCCCCCCeEEEEeCC-CCce-----eeeeccccCCceEEEEEeCCCCEEEEEEc
Q 001176 536 APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGAI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605 (1132)
Q Consensus 536 ~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1132)
........++++ ++++.++.+.. .++.|.+||.. +++. ...+..+....+..++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 233456789999 99987766542 35779999976 4442 22333322025778999999988888778
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 001176 606 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 660 (1132)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~ 660 (1132)
++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|+...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999998777776666543 368899999999955554 4568899998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-10 Score=126.60 Aligned_cols=246 Identities=10% Similarity=0.053 Sum_probs=163.2
Q ss_pred CCeeEEEEccCCCeEEEE-------EcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 344 SNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~-------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.+++++++
T Consensus 18 ~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~---------~~~~~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK---------PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC---------CEETTEECCEEEEEECSS
T ss_pred CCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee---------cccCCCCCCCceEEEecC
Confidence 4678999999997 6766 56789999999887764321 00 001224567899999999
Q ss_pred -CCeEEEEeCCCeEEEEEecCCCceee-eeeeec-ccCCEEEEEEecCCCcEEEEEEcCC---------------CcEEE
Q 001176 417 -GLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIKV 478 (1132)
Q Consensus 417 -g~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d---------------g~v~v 478 (1132)
|+++++.. .+.|.+||.+ ++.... .....+ ....+.+++++++|+ ++++...+ +.|..
T Consensus 82 ~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEE
Confidence 76555544 4479999988 553221 100011 124588999999998 56665544 56777
Q ss_pred EECCCCeEEEEecCCCCCeEEEEee--ccCCccEE-EEEecCCeEEEEEcCC-CCc-----eEEecCCC-CeEEEEEEcC
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPH--HKESIQFI-FSTAIDGKIKAWLYDY-LGS-----RVDYDAPG-NWCTMMAYSA 548 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~--~~~~~~~l-~s~s~dg~i~~wd~~~-~~~-----~~~~~~~~-~~v~~~~~s~ 548 (1132)
||.. ++..... .+......++++ .++++..+ ++...++.|.+||++. +.. ...+..+. ..+..+++++
T Consensus 158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 7765 5543322 333456788887 11344554 4445789999999863 221 11223333 5678999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN 616 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1132)
+|+..++... ++.|.+||..+++.+..+..+.. .+.+++|+++++.|++++ .++.|..|++..
T Consensus 236 ~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9988777643 56799999987877776665544 788999999999666554 567899998864
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-10 Score=126.03 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=164.2
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
...++++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4789999999998 788888889999999987765321 111 12233 9999999999988
Q ss_pred eCCC--eEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE----ecCCCCC
Q 001176 424 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 496 (1132)
Q Consensus 424 ~~dg--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~----~~~h~~~ 496 (1132)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999887654332212222 446688999999555 344467788999999887764322 2222222
Q ss_pred e--EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---------------CCeEEEEEEcCCCCEEEEEecC
Q 001176 497 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---------------GNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 497 v--~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
- ..++|+|.. +.++++-..++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998753 367777778899999987643 2222222 13478999999999666543
Q ss_pred CCCCCeEEEEeCCCCceeeeecccc--------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1132)
.++++|+.|++.++.. .++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0367899999877764 3333320 124778999999777676667788887765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-10 Score=126.51 Aligned_cols=252 Identities=13% Similarity=0.049 Sum_probs=166.4
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEEcccceee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 914 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 914 (1132)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578999999999666665 689999999988776655543 3334 99999 888888887766 7889988766543
Q ss_pred eee----ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCce-eEEECCCCcEEEEE
Q 001176 915 TKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET-KVQFHNDQTHLLVV 989 (1132)
Q Consensus 915 ~~l----~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~ 989 (1132)
..+ ..+...+.+++++|++..|..+..++.|+.||..++........ ...+... .... .++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-ELSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CCCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 22456788999999555555577788999999987652111000 0111110 1113 99999965555553
Q ss_pred --eCCeEEEEeCCCCceeecCCCC---C---------CCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceecccCC
Q 001176 990 --HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 990 --~d~~v~vwd~~~~~~~~~~~~~---~---------h~~~i~~i~~s~dg~~las~~-~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
.++.|+.|+.++... .+.... + .-.....++++++|+++++-+ .+++|+.|++.+|........
T Consensus 285 d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp ETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred eCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 468899999865422 221110 0 123478999999999777777 789999999888865432211
Q ss_pred C---ccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1055 S---AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1055 ~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
. .+.........-..+..+++++ ++.++++-..+++|+.+.+
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 0 0000000011235688999999 6888888888899988776
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-10 Score=137.53 Aligned_cols=251 Identities=11% Similarity=0.057 Sum_probs=164.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEc----CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
|...+..++|||||++++.+.+ ....|++||+.+|+.+.. . + +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CC
Confidence 3457889999999996555433 335799999999985431 0 0 11113568899 99
Q ss_pred CeEEEEeCCC-------------eEEEEEecCCCce-eeeeeeec-ccCCEEEEEEecCCCcEEEEEEc---CCCcEEEE
Q 001176 418 LMLGVAFSKH-------------IVHLYTYNPTGEL-RQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVW 479 (1132)
Q Consensus 418 ~~las~~~dg-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~---~dg~v~vw 479 (1132)
+.|+.++.+. .|++|++.++... ........ |...+..+.|+|||+.+ +++.+ .+..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999988774 3999998876532 11222233 45567899999999953 33333 23589999
Q ss_pred ECCCCe-EEEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCCEE
Q 001176 480 DVVAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 480 d~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
|+.++. ....+..+....... +++.++ .+++....+ +.|..+|+.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 998764 345666666666554 444432 455555443 6799999987654 234444555444 899999998
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeeE
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 620 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (1132)
+..... ++...|++||+..+ ....+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 877642 23457999998744 4444443333356677788888777765544 89999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.28 E-value=9.7e-10 Score=119.28 Aligned_cols=229 Identities=9% Similarity=0.081 Sum_probs=154.8
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
.-..+..|+|++..++++...++.|..||..+++... + .....+.+++++++|+++++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~~~~i~~~~dG~l~v~~ 71 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR------V---------------TMDAPVSSVALRQSGGYVATI 71 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE------E---------------ECSSCEEEEEEBTTSSEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------eCCCceEEEEECCCCCEEEEE
Confidence 3566899999776688888889999999998775421 1 134579999999999965543
Q ss_pred eCCCeEEEEEecCCCceeeeeeeec--ccCCEEEEEEecCCCcEEEEEE-cC--------CCcEEEEECCC-CeEEEEec
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVVA-GRKQYTFE 491 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~-~~--------dg~v~vwd~~~-~~~~~~~~ 491 (1132)
++.|.+||.++++.. ....... ....+.+++++|+|+ ++++. .. ...-.||.+.. ++.. .+.
T Consensus 72 --~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~ 145 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYF 145 (297)
T ss_dssp --TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEE
T ss_pred --CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEe
Confidence 567999999876532 2212111 123588999999998 45543 21 12334554442 4332 233
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC--CCCce-----EEecCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
.+....+.++|+|++. .++++.+.++.|.+|+++ ++... ..+.........+++.++|++.++... .+
T Consensus 146 ~~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~ 220 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GG 220 (297)
T ss_dssp EEESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TT
T ss_pred eccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CC
Confidence 3344568899987542 344666778999999984 33211 122223457789999999987766642 56
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEEc
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 605 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1132)
.|..||..+++.+..+..... .+++++|. |+++.|++++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 799999999999888877654 68999998 88887777653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-05 Score=95.79 Aligned_cols=532 Identities=10% Similarity=-0.014 Sum_probs=290.2
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeE
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 498 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 498 (1132)
+|+.+ ....|+..++++..... ...+. .-..+..++|++++.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45678999998754322 11222 2346789999997764 555666788999999765544333433334577
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
.+++.+.. +.+.++-...+.|.+.+++.................+++.|....|+..-. ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 88887543 356677777889999998765544444444556789999996666665532 125678888876544333
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.... . .....++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~-~-~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN-V-GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS-C-SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC-C-CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3322 2 2678899999888887775 567899999876544 233222 22346777764 44444444578898888
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
..++. ....+........ .+... .+... . ..+.+...++.
T Consensus 235 k~tg~-~~~~l~~~~~~p~------------~i~v~------------~~~~q-~-----------~~n~C~~~ng~--- 274 (628)
T 4a0p_A 235 KTSGQ-NRTIIQGHLDYVM------------DILVF------------HSSRQ-S-----------GWNECASSNGH--- 274 (628)
T ss_dssp TTTCC-SCEEEECSCCSCC------------EEEEE------------CGGGS-C-----------CCCTTTTTGGG---
T ss_pred CCCCC-ceEEEecCCCCcc------------eeeee------------eeccc-c-----------cceEeccCCCC---
Confidence 77773 2222222111000 01000 00000 0 00000000000
Q ss_pred ccccCceeeeecCCCCCCCcceEEecCC--cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccc
Q 001176 738 AEDVDKIKSWRIPDISDPSQIKALRLPD--SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 815 (1132)
Q Consensus 738 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 815 (1132)
-..+.+-.... . .....+. .......+|.. + ...|+.+. ...|+-..+..
T Consensus 275 ---C~~~C~~~~~~---~---~~C~C~~g~~l~~d~~~C~~--~-~~~Ll~s~-~~~i~~i~l~~--------------- 326 (628)
T 4a0p_A 275 ---CSHLCLAVPVG---G---FVCGCPAHYSLNADNRTCSA--P-TTFLLFSQ-KSAINRMVIDE--------------- 326 (628)
T ss_dssp ---CSSEEEEETTT---E---EEEECSTTCEECTTSSCEEC--C-SSEEEEEE-TTEEEEECCCT---------------
T ss_pred ---cchhhhcCCCC---C---eeEEcCCCcEecccCCcCcc--c-cceeeeec-cceEEEEeccc---------------
Confidence 00011100000 0 0000000 00001111111 1 12233222 23333222210
Q ss_pred ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeC------CCCCeEEEEEe
Q 001176 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFH 887 (1132)
Q Consensus 816 ~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s 887 (1132)
...........+ -..+.+++|.+.+..|..+. .+.|+.++.........+.. ....+..+++.
T Consensus 327 -----~~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 327 -----QQSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp -----TCCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred -----ccCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 000000111112 35578999999888887776 57899998875433233322 23468899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeee-ccccCCeeEEEEcC-CCCEEEEEcCCC--cEEEEECCCcccccceeeeC
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRFIQA 963 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~l~s~~~D~--~i~iwd~~~~~~~~~~~~~~ 963 (1132)
..++++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++.|-.... .|...+++..... .....
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~--~l~~~ 474 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE--VLFFS 474 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE--EEECS
T ss_pred ccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE--EEEec
Confidence 8445566666677889999985 4444333 33446689999999 555555533332 5666667654321 11111
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEEe--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 964 PAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 964 ~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
. ......+++++++..|..++ .+.|..+++++.....+... ......++++.. +.+..+=...+.|...
T Consensus 475 ~------l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~ 545 (628)
T 4a0p_A 475 G------LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKI 545 (628)
T ss_dssp S------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred c------CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence 1 13468999999988888764 47899999966655554321 133456777654 4555555566778888
Q ss_pred eCCCcceeccc
Q 001176 1042 DAETLRFRCRI 1052 (1132)
Q Consensus 1042 d~~~~~~~~~~ 1052 (1132)
|..+|+....+
T Consensus 546 ~k~~G~~~~~i 556 (628)
T 4a0p_A 546 DMTGREGRTKV 556 (628)
T ss_dssp ETTSSSCCEEE
T ss_pred ECcCCCCcEEE
Confidence 88877755443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-09 Score=115.93 Aligned_cols=227 Identities=11% Similarity=-0.001 Sum_probs=155.9
Q ss_pred CeEEEEEcCCC-CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 407 SVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 407 ~V~~v~~spdg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
-.-+..|+|++ .++++...++.|..||..++... .+ .....+.+++++++|+ ++++. ++.|.+||..+++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETTTTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECCCCc
Confidence 45578999964 45666667889999999886532 12 2456799999999998 45543 5689999998887
Q ss_pred EEEEecC----CCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 486 KQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 486 ~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
....... ....++.++++++ |.++++...+ ..-.+|.++.......+.........++|+||++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 5433221 1234778888764 4666654322 33456655544444333333445688999999998
Q ss_pred EEEEecCCCCCCeEEEEeC--CCCcee-----eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 553 LFSCGTSKEGESHLVEWNE--SEGAIK-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~--~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
|+.+.. ..+.|.+|++ .++... ..+.... .....++++++|+..++....+.|.+||..+++.+..+..
T Consensus 163 lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 163 FYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 876643 3567999987 455432 2222222 2577899999998877777788999999999999988876
Q ss_pred CCCCCCcceEEEc-CCCCEEEEEeCC
Q 001176 626 DGGLPASPRLRFN-KEGSLLAVTTSD 650 (1132)
Q Consensus 626 ~~~~~~v~~~~~s-~~~~~l~~~~~d 650 (1132)
+. ..+++++|. |+++.|++++..
T Consensus 239 p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 239 PV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CC--CCceEEEEeCCCCCEEEEEcCC
Confidence 63 368999998 888887776653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-10 Score=125.81 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=173.4
Q ss_pred CCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 344 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 566643 2343667776544322 111111 01224667899999999998777
Q ss_pred EEeC-----CCeEEEEEecCCCceeeeeeee----cccCCEEEEEEecCCCcEEEEEEc---CCCcEEEEECCCCeEEEE
Q 001176 422 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 422 s~~~-----dg~i~iwd~~~~~~~~~~~~l~----~h~~~v~~v~~s~d~~~~~l~s~~---~dg~v~vwd~~~~~~~~~ 489 (1132)
+... ++.|.+||+.+++.+... .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999987654422 221 12345689999987653 455555 678999999999988777
Q ss_pred ecCCCCCeE-EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 490 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 490 ~~~h~~~v~-~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 766532211 122222 345666777788876663 135789999999998887541 335666
Q ss_pred EeCC---CCc-----eee--eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 569 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 6532 111 000 1112222 3456899999988888888999999998566644333322 12357899999
Q ss_pred CCCCEEEEEeCCCc
Q 001176 639 KEGSLLAVTTSDNG 652 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~ 652 (1132)
+++.++++.+..+.
T Consensus 300 ~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 300 SDGYLYFDCNQLHH 313 (343)
T ss_dssp TTSCEEEEECCGGG
T ss_pred CCCcEEEEeCcccc
Confidence 99887777665433
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-10 Score=137.41 Aligned_cols=244 Identities=11% Similarity=0.125 Sum_probs=161.4
Q ss_pred CCCcCeEEEEEcCCCCeEEEEe-----CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC---
Q 001176 403 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 474 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--- 474 (1132)
+|...+..++|||||++||.+. .+.+|++||+.+++.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666889999999999998543 235799999999875432 1211 113578999 999 566666553
Q ss_pred ----------cEEEEECCCCe----EEEEecC-CCCCeEEEEeeccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001176 475 ----------MIKVWDVVAGR----KQYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 534 (1132)
Q Consensus 475 ----------~v~vwd~~~~~----~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~-~~~~~ 534 (1132)
.|++|++.++. .+..... |...+.++.++|++ .+|+.... ++.|+++|+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 49999998764 3333333 45567788887754 66644332 2589999998764 34445
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--eeeeccccCCceEEEEEeCCCCEEEEEEc-CC--eE
Q 001176 535 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 609 (1132)
Q Consensus 535 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 609 (1132)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555444444 6777877776654322357899999987654 344555544 333 88999998887664 44 68
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC----CcEEEEEcCCc
Q 001176 610 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 661 (1132)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~ 661 (1132)
++|++.++ ....+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998754 444454332 2245667778888877766554 78999998776
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-09 Score=117.88 Aligned_cols=234 Identities=11% Similarity=0.037 Sum_probs=157.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
......+..|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 55678899999999988889988999999988 443211 223556789999999999777
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecc-cCCEEEEEEecCCCcEEEEE----EcC-------------CCcEEEEECCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 483 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s----~~~-------------dg~v~vwd~~~ 483 (1132)
+...++.|.+|+.+ ++.........+. ...+.+++++++|+ +.+| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 66666889999986 4422111111111 23577899999998 6665 332 25688888777
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++..... .......++|+|++ ..|+.+... +.|.+|++..... .............+++.++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654333 34556789997754 666666554 7899999875431 111122233455788999999554
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1132)
+. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 255 ~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 255 SS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 43 1 2 3999998 577777776544 477899999998888887654 44333
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.7e-06 Score=97.12 Aligned_cols=527 Identities=9% Similarity=0.000 Sum_probs=269.8
Q ss_pred CCCeEEEEEecCCC-ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecCCCCCeEEEEe
Q 001176 425 SKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~i~~ 502 (1132)
....|+..++.+.. ... .+...-.....++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567888877542 111 11223345789999997764 445555678899999765432 2233333356889998
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
.+.. +.++++-...+.|.+.+++.................+++.|.+.+|+.... ...+.|...++..... ..+..
T Consensus 92 D~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~~-~~l~~ 167 (619)
T 3s94_A 92 DWLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSSR-FIIIN 167 (619)
T ss_dssp ETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCSC-EEEEC
T ss_pred EecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCce-EEEEe
Confidence 7643 356677777899999999866554444444556778999997666665532 1245677777653322 22222
Q ss_pred ccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..-.....++++++++.|+.+. ..+.|...|+............ ......+++..+ .+.++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 1222578899999887777765 5678999998765443333211 123467787655 34444445778999998777
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccc-ccc-cccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL-VDV-KPRVAE 739 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 739 (1132)
.. ...+........ .+. .+.+..+..........--.....+.. +.. .+....
T Consensus 245 ~~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C 299 (619)
T 3s94_A 245 EG-LREIHSDIFSPM------------DIH------------AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 299 (619)
T ss_dssp CC-CEECCSCCCCCS------------EEE------------ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEEC
T ss_pred cc-cEEEecCCCCCc------------EEE------------EEccccCCCccccccCCCCcccceEECCCCCCCceEeC
Confidence 33 222221111000 000 000100000000000000000000000 000 000000
Q ss_pred ccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccccc
Q 001176 740 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 819 (1132)
Q Consensus 740 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~ 819 (1132)
..|.. + . ....+|.. ....+|+. +..+.|+..++....
T Consensus 300 ~~g~~----l--------------~----~d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~----------------- 337 (619)
T 3s94_A 300 PTGVK----L--------------L----ENGKTCKD--GATELLLL-ARRTDLRRISLDTPD----------------- 337 (619)
T ss_dssp CTTCC----B--------------C----TTSSCBCS--SCSEEEEE-EESSCEEEEESSSTT-----------------
T ss_pred Cchhe----e--------------c----ccCcccCC--CCceEEEE-EcccceEEEecCCCc-----------------
Confidence 00000 0 0 00000000 01112222 223344444332110
Q ss_pred CCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEE
Q 001176 820 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 897 (1132)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg 897 (1132)
.......+.+ -..+.+++|++.+..|..++ .+.|+.++.........+.........+++.+.++++..+-
T Consensus 338 ---~~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 338 ---FTDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp ---CCCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred ---cceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 0111111222 34578899999777777665 68899999876444333443445678999987455666665
Q ss_pred eCCCcEEEEEcccceeeeeeccccCCeeEEEEcCC-CCEEEEEc-CCCcEEEEECCCcccccceeeeCCCCCCCCCCCce
Q 001176 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT-LNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 975 (1132)
Q Consensus 898 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 975 (1132)
+..+.|.+.++........+...-....+|++.|. |.+..|-. ....|...+++..... ..... . .....
T Consensus 411 ~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~~---~---l~~P~ 482 (619)
T 3s94_A 411 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVNT---S---LGWPN 482 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEECS---S---CSCEE
T ss_pred CCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEeC---C---CCCCe
Confidence 66788999998754322222333456789999997 44444432 2366777777654321 11111 1 13467
Q ss_pred eEEECCCCcEEEEEe--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 976 KVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 976 ~~~~s~dg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
.+++++++..|..++ .+.|..+++++...+.+.... .....++++..+ .+..+-...+.|...|..+|.
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--IPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC--CCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC--CCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 899999888877754 577999998655444332111 112234555433 333333445667777777763
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-09 Score=126.75 Aligned_cols=380 Identities=11% Similarity=0.047 Sum_probs=215.3
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCC----------e-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
.++.++.++.|+-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5777788899999999999998887643221 0 11122 2257888999999999999999988766
Q ss_pred cCC-C-CeEEEEEEcC---CCCEEEEEecCC--CCCCeEEEEeCCCCceeeeecccc-----------------------
Q 001176 535 DAP-G-NWCTMMAYSA---DGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFR----------------------- 584 (1132)
Q Consensus 535 ~~~-~-~~v~~~~~s~---~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 584 (1132)
... . .....+..+| ++ .++++.... ..++.|+.||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1111111112 44 444443211 136789999999999887765210
Q ss_pred -------CCceEEEEEeCCCCEEEEEEcCCe-------------------EEEEECCCCeeEEEEeCCCCC-------CC
Q 001176 585 -------KRSLGVVQFDTTRNRFLAAGDEFQ-------------------IKFWDMDNMNMLTTVDADGGL-------PA 631 (1132)
Q Consensus 585 -------~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 631 (1132)
......++++|+.+.++.+..++. |..||..+|+.+..+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 001125788998899999877763 999999999999887643221 11
Q ss_pred cceEEEcCCCC---EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCC
Q 001176 632 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 708 (1132)
Q Consensus 632 v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 708 (1132)
+.......+|+ .++.++.+|.++++|..+|+.+.+.-.......... .+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~---------------------------~~- 358 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM---------------------------DM- 358 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE---------------------------ET-
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc---------------------------Cc-
Confidence 11112223565 788899999999999999943322111100000000 00
Q ss_pred CCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeec
Q 001176 709 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 788 (1132)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 788 (1132)
..+..+.... ..|... .....+..|.......-..++|+|+...+++..
T Consensus 359 ----------------------~~~~pi~~~~----~~~~~~-----~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~ 407 (689)
T 1yiq_A 359 ----------------------KTGRPILDEE----NAAYWK-----NGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPA 407 (689)
T ss_dssp ----------------------TTTEEEECHH----HHCTTT-----SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEE
T ss_pred ----------------------cCCCcccchh----hccccC-----CCCeeEeCCCcccccCCCcceECCCCCEEEEec
Confidence 0000000000 000000 001122233322233445689999988888877
Q ss_pred ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC---CCEEEEee-CCeEEEEE
Q 001176 789 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS-GGKVSLFN 864 (1132)
Q Consensus 789 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d---g~~la~~s-dg~i~vwd 864 (1132)
.+....++...... .|....+... ... . +...|. +....... +|.|+.||
T Consensus 408 ~~~~~~~~~~~~~~--------------~~~~~~~~~~----------~g~-~-~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 408 HIMSAYYEHIPEAP--------------KRNPFKSMYQ----------LGL-R-TGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp EECCEEEECCSSCC--------------CCCSCTTSCC----------CSS-E-ECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred cccceeeeeccccc--------------cccccccccc----------cCc-c-ccccCcccccCCCCCCCcceeEEEEE
Confidence 76555444221000 0110000000 000 0 000000 00000011 47899999
Q ss_pred CCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCCCEEE
Q 001176 865 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALV 937 (1132)
Q Consensus 865 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~ 937 (1132)
+.+++.+..+..+.. +..-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|+.+|+..+
T Consensus 462 ~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 999999888775543 33335555 6678899999999999999999999888754332 24467778887544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-10 Score=125.20 Aligned_cols=184 Identities=9% Similarity=0.069 Sum_probs=135.5
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
.++.+++++... ++++|+.+ .+.+|++.......... ... ........+.. |++++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~------~~~---~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD------STP---LTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS------SCC---CCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc------ccc---ccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 799999999998 67888776 55669976543110000 000 00101223556 999999 99999999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 504 (1132)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998866433 45567788988887754 27788899999999999887653 456899999988
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc--eEEe------c---CCCCeEEEEEEcCCCCEEEEEec
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.+ ++.|..||++++|+.+.... ...+ . .+...|.+++|.+++.++++-..
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 64 78899999999998887664 4444 2 35789999999999999886543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.5e-09 Score=114.30 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=150.7
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
-..+..|+|+++.+++++..++.|.+||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------ECCCcceEEEEeCCCeEEEEE-
Confidence 456889999877788888888999999998765321 1 123579999999999987765
Q ss_pred CCCeEEEEEecCCCceeeeeeeec--ccCCEEEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeEEEEecCCCCC
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
.+ .|.+||..+++... ...... ....+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999988876322 111111 123688999999998 4544332 24555556 56543 33233345
Q ss_pred eEEEEeeccCCccEE-EEEecCCeEEEEEcC--CC-Cc-----eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 497 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
...++|++++ +.+ ++.+.++.|.+||++ ++ .. ...+.........+++.++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6788887754 554 555567899999986 43 21 112222345678899999998776654 256799
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEEc
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 605 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1132)
+||. +++.+..+..... .+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 9998 5777777765544 68999998 88887766553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-09 Score=117.11 Aligned_cols=267 Identities=9% Similarity=0.038 Sum_probs=162.9
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc------cCCceEEEEEeCCCCEEEEEEc-----CC
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAGD-----EF 607 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-----dg 607 (1132)
..+..++++++|+.+++..... ++.+.+|.+.+++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--QPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--CCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCC--CCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 5678999999999988864211 12134444435543 322211 1126888999999875555433 57
Q ss_pred eEEEEECCCCeeEEEEeCCCC----CCCcceEEEcCCCCEE-EEEe---CCCcEEEEEcCCcceeeeeccccccccccCC
Q 001176 608 QIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLL-AVTT---SDNGIKILANSDGVRLLRMLEGRAMDKNRCP 679 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l-~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1132)
.|.+||+.+++.+..+..... ...+..+++++++..+ ++.. .++.|.+||..++ +..+.+.+|.....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~--- 169 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAP--- 169 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSC---
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccc---
Confidence 999999999998877764321 1246899999865555 4444 5789999999877 44444433211000
Q ss_pred CCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcce
Q 001176 680 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 759 (1132)
Q Consensus 680 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 759 (1132)
T Consensus 170 -------------------------------------------------------------------------------- 169 (343)
T 2qe8_A 170 -------------------------------------------------------------------------------- 169 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCC
Q 001176 760 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 839 (1132)
Q Consensus 760 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~ 839 (1132)
.. ..+..+|..+.+...++.+..| ...
T Consensus 170 ----------~~---~~~~~~g~~~~~~~~~g~~~~~----------------------------------------~~~ 196 (343)
T 2qe8_A 170 ----------ED---IDLVIDGVPVQIGQPDGTVIRP----------------------------------------HLG 196 (343)
T ss_dssp ----------CS---CCCEETTEECBEECTTSCEECC----------------------------------------CCC
T ss_pred ----------cc---cceeECCEEEEeccCCCceece----------------------------------------ecc
Confidence 00 1122344444444445544433 223
Q ss_pred eeEEEEeeCCCEEEEee-C-CeEEEEECC---CCe-----EEE--EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 840 AACIALSKNDSYVMSAS-G-GKVSLFNMM---TFK-----VMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s-d-g~i~vwd~~---~~~-----~~~--~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
+..++++|||+.|+++. + ..+..++.. .+. ... ...++.+....+++++ +|.++++...++.|.+||
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEE
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEE
Confidence 56788888888887776 3 355555532 110 000 1112334567799999 889998888899999999
Q ss_pred cccceeeeeecc-ccCCeeEEEEcCCCCEEEEEcCCCcEE
Q 001176 908 VRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLC 946 (1132)
Q Consensus 908 ~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~~~D~~i~ 946 (1132)
..+++....... +...+.+++|.++++++++.+..+.+.
T Consensus 276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 856664333322 245688999999999888887655443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.1e-10 Score=121.46 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=123.8
Q ss_pred eEEEEeeCCCEEEEee---CCeEEE--EECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-----
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSL--FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----- 910 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~----- 910 (1132)
..++++|||++++++. +..|.+ +|..+ +.++.... . +.+.|++.+.+++.+.||.+.+.|+.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3588889998888875 356888 88876 34443211 1 223453445566677888888889886
Q ss_pred ceeeee----eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCC------CCCCCCCCCceeEEEC
Q 001176 911 DEVKTK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP------AGRQSPLVGETKVQFH 980 (1132)
Q Consensus 911 ~~~~~~----l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s 980 (1132)
++.... +.--..+. + ++++..++..+. +.|.+.|+.+........+... .+.. ......++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~--p~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR--SAGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE--ECSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc--cCcceeeEEc
Confidence 543321 11112233 3 666776666666 8999999875331110011100 0000 0122337899
Q ss_pred CCCcEEEEE-e-C--------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCE-EEEEe-cCCcEEEEeCCCcc
Q 001176 981 NDQTHLLVV-H-E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLL-VYAGF-CDGAIGVFDAETLR 1047 (1132)
Q Consensus 981 ~dg~~l~~~-~-d--------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~-las~~-~dg~i~vwd~~~~~ 1047 (1132)
||+++++++ . . +.+.++|. +.+.+..+..+ .....|+|+|||++ +++.. .++.|.++|+.+++
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 999998874 3 2 36779999 66666666442 35889999999984 55555 49999999999999
Q ss_pred eecccC
Q 001176 1048 FRCRIG 1053 (1132)
Q Consensus 1048 ~~~~~~ 1053 (1132)
.+.++.
T Consensus 349 vv~~I~ 354 (368)
T 1mda_H 349 DQSSVE 354 (368)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 998885
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=9e-09 Score=124.47 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=129.3
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCC-----------eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-----------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-----------v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
.++.++.++.|.-+|..+|+.+.++...... ...+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4777777899999999999999877643211 112222 2367888899999999999999988877
Q ss_pred cCC-C----CeEEEEEEcCCCCEEEEEecCCC--CCCeEEEEeCCCCceeeeeccccCC---------------------
Q 001176 535 DAP-G----NWCTMMAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR--------------------- 586 (1132)
Q Consensus 535 ~~~-~----~~v~~~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~--------------------- 586 (1132)
... . ..+.+.-.. .+..+++++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 111110011 2345555442111 2678999999999998777542210
Q ss_pred ----------ceEEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeeEEEEeCCCCC-------C
Q 001176 587 ----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL-------P 630 (1132)
Q Consensus 587 ----------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 630 (1132)
....++++|++..++.+..++ .|..+|..+|+.+..+....+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 113478899999998877654 5999999999999887643221 1
Q ss_pred CcceEEEcCCC---CEEEEEeCCCcEEEEEcCCcc
Q 001176 631 ASPRLRFNKEG---SLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 631 ~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
....+....+| ..++.++.+|.++++|..+|+
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 12222333467 688999999999999999993
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-10 Score=122.38 Aligned_cols=187 Identities=11% Similarity=0.046 Sum_probs=134.4
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..+..+++++....+++++.++ +.+|++........... . +.. .... .. + .. |+.++| |+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~---~-----~~~--~~~~--~~---l-p~-V~~l~f--d~ 97 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS---T-----PLT--FKWE--KE---I-PD-VIFVCF--HG 97 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS---C-----CCC--CSEE--EE---C-TT-EEEEEE--ET
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc---c-----ccc--ceEE--ee---C-CC-eeEEEE--CC
Confidence 3688999999999998888875 55598753220000000 0 000 0011 11 3 45 999999 99
Q ss_pred CEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEE
Q 001176 850 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 929 (1132)
Q Consensus 850 ~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 929 (1132)
++|+++.++.|++||+.+.........|...+.++.+.+ . -+|+++.||.|.+||+.++.... +...|+|++|
T Consensus 98 ~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 98 DQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp TEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred CEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 999999899999999988776666777788888888776 3 38889999999999999877543 4568999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCcccccceeeeC------CCCCCCCCCCceeEEECCCCcEEEE
Q 001176 930 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA------PAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 930 spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
||+| ++.+..||++++|+...++......+.. ..++. ..|.++.|.+++.++++
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 9999 6789999999999888766311111211 01222 67899999999999988
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-08 Score=111.17 Aligned_cols=224 Identities=15% Similarity=0.066 Sum_probs=147.1
Q ss_pred eEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 408 VNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 408 V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
..+.+|+|++. ++++...++.|..||..+++.. .+ .+...+.+++|+++|+ ++++. .+ .|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VH-ALPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EE-ECSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EE-ECCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcE
Confidence 35678999754 5566667889999999876422 12 1346799999999997 55544 34 499999988875
Q ss_pred EEEecC----CCCCeEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 487 QYTFEG----HEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 487 ~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
...... ....+.++++++++ .++++...+ +...+|.+++ .....+.........++|+||++.++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 432221 12357888887744 666554322 2234444433 333333222335678999999998876642
Q ss_pred CCCCCCeEEEEeCC--CC-ce-----eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 559 SKEGESHLVEWNES--EG-AI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
.++.|.+||.. ++ .. ...+.... .....++++++|..+++...++.|.+||. +++.+..+..+. .
T Consensus 199 ---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~ 271 (326)
T 2ghs_A 199 ---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--K 271 (326)
T ss_dssp ---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--S
T ss_pred ---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC--C
Confidence 35679999986 55 32 22222222 25678999999987777767789999998 577777776553 2
Q ss_pred CcceEEEc-CCCCEEEEEeCC
Q 001176 631 ASPRLRFN-KEGSLLAVTTSD 650 (1132)
Q Consensus 631 ~v~~~~~s-~~~~~l~~~~~d 650 (1132)
.+.+++|+ ++++.|++++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEBC
T ss_pred CcEEEEEecCCCCEEEEEecC
Confidence 68899998 888877666554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-09 Score=119.26 Aligned_cols=269 Identities=9% Similarity=-0.029 Sum_probs=172.2
Q ss_pred CeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe-------
Q 001176 356 QTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF------- 424 (1132)
Q Consensus 356 ~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~------- 424 (1132)
.+++++...++ .|.+.|..+++.+.+ + -.+. .+ .+++||||+++.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~--i----------------~vG~-~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGH--S----------------LGAF-LS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEE--E----------------EECT-TC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEE--E----------------eCCC-CC--ceEECCCCCEEEEEcccccccc
Confidence 34555555455 888999999987754 1 1122 24 799999999998886
Q ss_pred ---CCCeEEEEEecCCCceeeeeeeecc-----cCCEEEEEEecCCCcEEEEEEcC--CCcEEE--EECCCCeEEEEecC
Q 001176 425 ---SKHIVHLYTYNPTGELRQHLEIDAH-----VGGVNDIAFAHPNKQLCIVTCGD--DKMIKV--WDVVAGRKQYTFEG 492 (1132)
Q Consensus 425 ---~dg~i~iwd~~~~~~~~~~~~l~~h-----~~~v~~v~~s~d~~~~~l~s~~~--dg~v~v--wd~~~~~~~~~~~~ 492 (1132)
.++.|.+||..+++.+.... +.+. ......++|+|||+. ++.+.. +..|.+ +|+.+ +.++.-
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999988766432 2100 123568999999994 555543 467888 99877 444432
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC----CCceE-----EecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
- +. ..+.|.+. ..+++.+.||.+.+.|+.+ ..... .+.....+. . ++++..++..+.
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~----- 230 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA----- 230 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence 1 11 12334433 4556677888888888876 22211 111112233 3 566666665542
Q ss_pred CeEEEEeCCCCc--eeeeeccc---------cCCceEEEEEeCCCCEEEEEEc-C--------CeEEEEECCCCeeEEEE
Q 001176 564 SHLVEWNESEGA--IKRTYSGF---------RKRSLGVVQFDTTRNRFLAAGD-E--------FQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 564 ~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~ 623 (1132)
+.+.+.|..++. .+..+... .......++++|++++++++.. . +.+.++|+.+.+.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 568889986532 23322211 0001222689999998887543 2 35669999999999888
Q ss_pred eCCCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeeecc
Q 001176 624 DADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
.... ....++|+|||+ ++++.. .++.|.++|+.++ +..+.+.
T Consensus 311 ~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 311 SNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred ECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 7543 468999999998 455566 5899999999998 6666654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-08 Score=123.71 Aligned_cols=238 Identities=10% Similarity=0.055 Sum_probs=147.3
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc-------CCE-EEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-------GGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-------~~v-~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
+..|++++.++.|.-+|..+|+.+-....-.... ..+ ..++. ++. .|+.++.|+.|..+|..+|+.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCCEee
Confidence 5667777788899999999988654321100000 001 11222 244 58888899999999999999987
Q ss_pred EecCC--CCCeEEEEeecc-CCccEEEEEe------cCCeEEEEEcCCCCceEEecCCC---------------------
Q 001176 489 TFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG--------------------- 538 (1132)
Q Consensus 489 ~~~~h--~~~v~~i~~~~~-~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~--------------------- 538 (1132)
++... ......+...|. .+ ..++.++ .++.|+.||..+++.+..+....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 76542 111111111110 02 3444443 37899999999999877654210
Q ss_pred ----------CeEEEEEEcCCCCEEEEEecCCC-----------CC----CeEEEEeCCCCceeeeeccccC--------
Q 001176 539 ----------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK-------- 585 (1132)
Q Consensus 539 ----------~~v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~-------- 585 (1132)
.....++++|++..++.+..++. ++ +.|..+|..+|+.+..++....
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 01125788898888888764210 01 2499999999999988764211
Q ss_pred CceEEEEEeCCCC---EEEEEEcCCeEEEEECCCCeeEEEEeCCC-----------------------------------
Q 001176 586 RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDADG----------------------------------- 627 (1132)
Q Consensus 586 ~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------------- 627 (1132)
..........+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 1122222333554 68888899999999999999885443211
Q ss_pred --CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 628 --GLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 628 --~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+...-..++++|+..++++...+....++...
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence 00011237889988899888887776666543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-08 Score=108.60 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=99.4
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCC---------CCCeEE-EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h---------~~~v~~-i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 535 (1132)
.++.++.++.|..+|..+|+.+..+... ...+.+ +.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 5778888999999999999988766542 122222 222 23678889999999999999988877665
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCc----eEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
............ +..++.++. ++.|+.+|..+|+.+..+....... ....... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221111221 345666543 6789999999999887776532200 0112222 457788888999999
Q ss_pred EECCCCeeEEEEeC
Q 001176 612 WDMDNMNMLTTVDA 625 (1132)
Q Consensus 612 wd~~~~~~~~~~~~ 625 (1132)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999998877654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-08 Score=110.01 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=153.0
Q ss_pred CCcCeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 404 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
........+|+|+|+ +++++..++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 444677899999998 56667778899999874 43 22 3444567789999999998 66666666889999975
Q ss_pred CCeEEEEec---C-CCCCeEEEEeeccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCeE
Q 001176 483 AGRKQYTFE---G-HEAPVYSVCPHHKESIQFIFS----TAI-------------DGKIKAWLYDYLGSRVDYDAPGNWC 541 (1132)
Q Consensus 483 ~~~~~~~~~---~-h~~~v~~i~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~~~v 541 (1132)
++...... + ....+..+++.+ +|.+.++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 65432211 1 123466788866 4477775 322 245777776555544332 33456
Q ss_pred EEEEEcCCCCEEEEEecCC--CCCCeEEEEeCCCCcee--eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 542 TMMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
..++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+..++ ..+ .|.+|+. ++
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence 7899999999887765310 01367999998755411 1121111224556889999985444 444 5999998 57
Q ss_pred eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 618 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
+.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 7777776543 478999999999898888764333
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-08 Score=117.54 Aligned_cols=284 Identities=9% Similarity=0.052 Sum_probs=179.5
Q ss_pred EEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC
Q 001176 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 438 (1132)
Q Consensus 359 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~ 438 (1132)
+++++.++.|.-+|..+|+.+ |................+ .....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTGFKGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGGGGSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEE-------EEEcCCCCcccccccccc-CCCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 556666899999999999864 433221110000000000 00012222 56788888999999999999998
Q ss_pred ceeeeeeeecc-c----CCEEEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeEEEEecCCCCC-----------
Q 001176 439 ELRQHLEIDAH-V----GGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP----------- 496 (1132)
Q Consensus 439 ~~~~~~~l~~h-~----~~v~~v~~s~d~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~h~~~----------- 496 (1132)
.+-.. ..+ . ..+.+.-...++. ++.++. ++.|+.+|..+|+.+.++......
T Consensus 150 ~~W~~---~~~~~~~~~~~~~~~p~v~~~~---v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 150 EVWHQ---NTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp EEEEE---ETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred EEeee---cCCcCcCcCcccccCcEEECCE---EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 76532 222 1 1122111112343 444442 799999999999998877543211
Q ss_pred ---------------------eEEEEeeccCCccEEEEEecCC-------------------eEEEEEcCCCCceEEecC
Q 001176 497 ---------------------VYSVCPHHKESIQFIFSTAIDG-------------------KIKAWLYDYLGSRVDYDA 536 (1132)
Q Consensus 497 ---------------------v~~i~~~~~~~~~~l~s~s~dg-------------------~i~~wd~~~~~~~~~~~~ 536 (1132)
...+++++.. .+++.++.++ .|..+|.++++.+..+..
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~--~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAEL--NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccCceeEeCCCcccccceeEcCCC--CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 1234555543 6777776654 599999999988876554
Q ss_pred CCC---------eEEEEEEcCCC---CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC----------ce------
Q 001176 537 PGN---------WCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----------SL------ 588 (1132)
Q Consensus 537 ~~~---------~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----------~v------ 588 (1132)
..+ ....+....+| +.++.+. .++.++++|..+|+.+..+...... .+
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAP----KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEEC----CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 211 12223333467 4566654 4889999999999988765422110 01
Q ss_pred ------------------EEEEEeCCCCEEEEEEcC-------------------------------------------C
Q 001176 589 ------------------GVVQFDTTRNRFLAAGDE-------------------------------------------F 607 (1132)
Q Consensus 589 ------------------~~~~~~~~~~~l~~~~~d-------------------------------------------g 607 (1132)
..++++|++..+++...+ |
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 146889998888875432 7
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
.|..||+.+++.+....... .+....+..++.++++++.||.+++||..++ +.+..+
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~ 514 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEA 514 (677)
T ss_dssp EEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred EEEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeee
Confidence 89999999999988876532 3455667778889999999999999999999 444433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-09 Score=121.86 Aligned_cols=342 Identities=15% Similarity=0.095 Sum_probs=202.1
Q ss_pred EEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe----------cCCeEEEEEcCCCCceEEe
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------IDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s----------~dg~i~~wd~~~~~~~~~~ 534 (1132)
+.+.||+..|.|+|+-+.+++.++.+.-....-. .-|-..+....++..+ .+|. ... .
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~~~-~ 83 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------RIH-D 83 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------SSC-C
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------eec-c
Confidence 4788999999999999999999887752110000 0000000000011000 0010 000 0
Q ss_pred cCCCCeEEEEEE---cCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEE-e-CCCCEEEEEE-----
Q 001176 535 DAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG----- 604 (1132)
Q Consensus 535 ~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~----- 604 (1132)
.+..+. ..+++ .+||++++.+.. .+.+|.+.|+.+.++...+.-........+++ + |+++++++++
T Consensus 84 ~gd~hh-~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p 159 (595)
T 1fwx_A 84 NGDLHH-VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETP 159 (595)
T ss_dssp CCCBCC-EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEE
T ss_pred cCCCCc-cccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccc
Confidence 001111 23333 248899988753 46789999999999888554433335778887 5 9999999985
Q ss_pred -------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE-EEEEcCCcceeeeeccc
Q 001176 605 -------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANSDGVRLLRMLEG 670 (1132)
Q Consensus 605 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~ 670 (1132)
.++.+.++|..+.+.+..+...+. ...++++|+|+++++.+.+..- ...+..+.
T Consensus 160 ~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~--------- 227 (595)
T 1fwx_A 160 LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTA--------- 227 (595)
T ss_dssp SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTC---------
T ss_pred cCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccc---------
Confidence 345799999999999988876432 3678899999999998865321 00000000
Q ss_pred cccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecC
Q 001176 671 RAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIP 750 (1132)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 750 (1132)
.....+.+++..
T Consensus 228 --------------------------------------------------------------------~~~d~v~V~~~~ 239 (595)
T 1fwx_A 228 --------------------------------------------------------------------AEMDHIVVFNIA 239 (595)
T ss_dssp --------------------------------------------------------------------CSEEEEEEEEHH
T ss_pred --------------------------------------------------------------------cccceEEEeecc
Confidence 000222233322
Q ss_pred CCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccC
Q 001176 751 DISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 830 (1132)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 830 (1132)
... .+.++|+.... +.|.|.|....+ +......+
T Consensus 240 ~~~----------------------~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~I 273 (595)
T 1fwx_A 240 EIE----------------------KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYI 273 (595)
T ss_dssp HHH----------------------HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEE
T ss_pred cee----------------------EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEE
Confidence 100 02233333222 335555543210 11111111
Q ss_pred CCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCe------------EEEEeeCCCCCeEEEEEeCCCCCeEEE
Q 001176 831 NESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAI 896 (1132)
Q Consensus 831 ~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~sp~~~~~las 896 (1132)
+. .....++.++|||+++++++ +++|.++|+.+.+ ...... -......++|+| +|...++
T Consensus 274 pv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t 347 (595)
T 1fwx_A 274 PI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTS 347 (595)
T ss_dssp EE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEE
T ss_pred ec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEE
Confidence 11 23456899999999999887 7899999998653 223332 335678999999 7766667
Q ss_pred EeCCCcEEEEEccc----------ceeeeeeccccCCe-----eEEEEcCCCCEEEEEcC---CCc----------EEEE
Q 001176 897 GMEDSSVQIYNVRV----------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSGA---DAQ----------LCMW 948 (1132)
Q Consensus 897 g~~dg~v~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~spdg~~l~s~~~---D~~----------i~iw 948 (1132)
...|+.|.+||+.+ .+.+.++..|..+- .++.++|||++|+++.. |+. -.++
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~ 427 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLI 427 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence 78899999999987 45667776654421 23456899999998753 442 2789
Q ss_pred ECCCcc
Q 001176 949 SIDKWE 954 (1132)
Q Consensus 949 d~~~~~ 954 (1132)
|+.+++
T Consensus 428 dis~~~ 433 (595)
T 1fwx_A 428 DISGDK 433 (595)
T ss_dssp ECSSSS
T ss_pred EcCCCc
Confidence 996544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-07 Score=106.58 Aligned_cols=271 Identities=10% Similarity=0.030 Sum_probs=167.3
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 437 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~ 437 (1132)
.+.+++.++.|..+|..+|+.+ |.......... .......+.+ ....++..+.+++.++.|..+|..++
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~-------W~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEI-------WSVSLAEKDGW---FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEE-------EEEECCC---C---CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCeEEEEEccCCcee-------eeecCcccccc---ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCC
Confidence 3666777899999999998864 32211000000 0000122222 22225667888889999999999998
Q ss_pred CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe-----EEEEeeccCCccEEE
Q 001176 438 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV-----YSVCPHHKESIQFIF 512 (1132)
Q Consensus 438 ~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-----~~i~~~~~~~~~~l~ 512 (1132)
+.+-.. ............ .++ .++.++.++.|..+|..+|+.+..+....... ...... +..++
T Consensus 124 ~~~W~~---~~~~~~~~~p~~-~~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~~v~ 192 (376)
T 3q7m_A 124 TVAWQT---KVAGEALSRPVV-SDG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA----FGAAV 192 (376)
T ss_dssp CEEEEE---ECSSCCCSCCEE-ETT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE----TTEEE
T ss_pred CEEEEE---eCCCceEcCCEE-ECC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE----CCEEE
Confidence 865422 212111111222 233 57778889999999999999887765432211 111221 25688
Q ss_pred EEecCCeEEEEEcCCCCceEEecCCCCe----EEE---EEEcC--CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 513 STAIDGKIKAWLYDYLGSRVDYDAPGNW----CTM---MAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~~~~~~~~~~~----v~~---~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
.++.++.+..+|..+++........... +.. +...| .+..++.++. ++.+..+|..+|+.+......
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~~ 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKRELG 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECCC
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccCC
Confidence 8888999999999988877665432210 000 11111 2455666543 667999999999987765532
Q ss_pred cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 584 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
....+.. ++..++.++.++.|..+|..+++.+........ ..+..... .+..|++++.+|.|.++|..+++
T Consensus 269 ---~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 269 ---SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 2333433 367888888999999999999998877652211 12223333 25688889999999999999983
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-09 Score=115.97 Aligned_cols=294 Identities=10% Similarity=-0.007 Sum_probs=180.4
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
..+..++.++.|..|| .+++...........+.++...++|...+ ++ .. |..+|. +++.+..+..... ..
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-----~~-l~~~d~-~g~~~~~~~~~~~-~~ 100 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GS-----DK-VYAINP-DGTEKWRFDTKKA-IV 100 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SS-----CE-EEEECC-CGGGGGGSCC------
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ec-----Cc-EEEECC-CCcEEEEEECCCC-cc
Confidence 4567777888899999 66666555444444567777777776444 33 23 888886 6665544443222 22
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
....+. +..++.++.++.|..+|.. ++.......... .+.++...+++. +..++.++.|..+|.. + +....+
T Consensus 101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g-~~~~~~ 172 (330)
T 3hxj_A 101 SDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-G-TEKWRF 172 (330)
T ss_dssp CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-S-CEEEEE
T ss_pred cCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-C-CEeEEE
Confidence 223333 5667888889999999998 777766654432 466777777776 5567788899999987 5 222221
Q ss_pred cccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeee
Q 001176 669 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 748 (1132)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 748 (1132)
...
T Consensus 173 ~~~----------------------------------------------------------------------------- 175 (330)
T 3hxj_A 173 KTN----------------------------------------------------------------------------- 175 (330)
T ss_dssp ECS-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccc
Q 001176 749 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 828 (1132)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 828 (1132)
...+.++.+.+++... +++ +.+..+| . ++.....
T Consensus 176 --------------------~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~----------------------~g~~~~~ 209 (330)
T 3hxj_A 176 --------------------DAITSAASIGKDGTIY-FGS--DKVYAIN-P----------------------DGTEKWN 209 (330)
T ss_dssp --------------------SCCCSCCEECTTCCEE-EES--SSEEEEC-T----------------------TSCEEEE
T ss_pred --------------------CCceeeeEEcCCCEEE-EEe--CEEEEEC-C----------------------CCcEEEE
Confidence 0112223333444433 333 4455543 1 1111111
Q ss_pred cCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc
Q 001176 829 DINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 829 ~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 908 (1132)
... . ...+.+++.+++|...+...++.|..+|. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|.
T Consensus 210 ~~~---~-~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 210 FYA---G-YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp ECC---S-SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT
T ss_pred Ecc---C-CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC
Confidence 111 1 34567788888887666655788888884 5666666665555455666765 45 5556888889999995
Q ss_pred ccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 909 RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 909 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
+++.+..+......+.++...++|.+. .++.+|.+++...+.
T Consensus 283 -~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 283 -DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred -CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 677777666556667888887887654 488899998887654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-08 Score=106.34 Aligned_cols=238 Identities=12% Similarity=0.074 Sum_probs=146.8
Q ss_pred cCCceEEee-cccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-
Q 001176 779 NSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 856 (1132)
Q Consensus 779 ~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s- 856 (1132)
.++++|++. ..++.|.++|+.+....+.-.... +..++... .+ ...-..+..+||| .++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i---------e~~~~~~~--~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI---------EPEEVKKV--SG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE---------CHHHHHHH--HC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee---------chhhcccc--cC----CCcccceeECCCe-EEEEcCC
Confidence 778877664 456889999975432221111000 00000000 00 1123457788999 555543
Q ss_pred C------CeEEEEECCCCeEEEEeeCCCC---CeEEEEEeCCCCCeEEEEe-------------------CCCcEEEEEc
Q 001176 857 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 908 (1132)
Q Consensus 857 d------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~ 908 (1132)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999873322 234588899 888887774 3679999999
Q ss_pred ccceeeeeeccc--cCCeeEEEE--cCCCCEEEEEc------CCCcEEEEECCCcccccceeeeCCC----CCCC--C--
Q 001176 909 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPA----GRQS--P-- 970 (1132)
Q Consensus 909 ~~~~~~~~l~~h--~~~V~~l~~--spdg~~l~s~~------~D~~i~iwd~~~~~~~~~~~~~~~~----~~~~--~-- 970 (1132)
.+++.+.++..- ......+.| +|+++++..++ .+++|.+|..+.++-.....+.... +..+ +
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888877642 123445656 99999877766 4668888776654321111111111 0000 0
Q ss_pred ----CCCceeEEECCCCcEEEEEe--CCeEEEEeCC-C---CceeecCCCCC-----C------CCCeEEEEEccCCCEE
Q 001176 971 ----LVGETKVQFHNDQTHLLVVH--ESQISVYDSK-L---ECSRSWSPKDA-----L------PAPISSAIYSCDGLLV 1029 (1132)
Q Consensus 971 ----~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~~-~---~~~~~~~~~~~-----h------~~~i~~i~~s~dg~~l 1029 (1132)
......+.+|+||++|.++. .+.|.+||+. . +.+..+..+-. | ...-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 13468899999999999974 6789999982 2 33333322100 0 1134779999999999
Q ss_pred EEEe
Q 001176 1030 YAGF 1033 (1132)
Q Consensus 1030 as~~ 1033 (1132)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9988
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.3e-08 Score=106.19 Aligned_cols=238 Identities=15% Similarity=0.144 Sum_probs=151.3
Q ss_pred Ec--cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC-CcCeEEEEEcCCCCeEEEEeCC-
Q 001176 351 FH--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGPDGLMLGVAFSK- 426 (1132)
Q Consensus 351 ~s--pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~las~~~d- 426 (1132)
++ ++++++++.|..++.|.|.|+.+..... +..+..+ ...+.... ...-..+..+||| .++++..+
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCCc
Confidence 37 8999888899999999999997542110 0011110 00001011 1134567888999 66666554
Q ss_pred -----CeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEc-------------------CCCcEEEEEC
Q 001176 427 -----HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWDV 481 (1132)
Q Consensus 427 -----g~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~-------------------~dg~v~vwd~ 481 (1132)
|.|.+.|.++.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||+
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 789999999988665332 12222 2234688999999 677764 4689999999
Q ss_pred CCCeEEEEecCC-C-CCeEEEEeeccCCccEEEEEe------cCCeEEEEEcCCCCceE--E--ecCC------------
Q 001176 482 VAGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRV--D--YDAP------------ 537 (1132)
Q Consensus 482 ~~~~~~~~~~~h-~-~~v~~i~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~--~--~~~~------------ 537 (1132)
.+++.+.++.-- . .....+.|..++++.++..++ .+++|.+|..+.+.... . +...
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 1 234456564444556666655 56788887665422111 1 1110
Q ss_pred ----CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC---CceeeeeccccC-------------CceEEEEEeCCC
Q 001176 538 ----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRK-------------RSLGVVQFDTTR 597 (1132)
Q Consensus 538 ----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~ 597 (1132)
......+.+|+||++|.++.. +.+.|.+||+.. .+.+..+..... .....+.++|||
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG 392 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG 392 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred cccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence 245678999999999998875 567899999853 344444433210 024668999999
Q ss_pred CEEEEEE
Q 001176 598 NRFLAAG 604 (1132)
Q Consensus 598 ~~l~~~~ 604 (1132)
++|+++.
T Consensus 393 k~LyVaN 399 (462)
T 2ece_A 393 RRVYVTN 399 (462)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 9999875
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=0.00028 Score=83.69 Aligned_cols=457 Identities=7% Similarity=-0.043 Sum_probs=242.7
Q ss_pred CcCeEEEEEcCCCCeEEEEe-CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 405 AISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
-..+..++|++.+..|..+. ..+.|..+++++...... .+.........+++.+.+.. ++++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 34578999999777666554 467899999876532111 22222356889999997664 556666788999999765
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
......+...-....+|++.|.. |.++++- +..+.|...+++.................+++++++..|+.+-. +
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~ 191 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---K 191 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---T
T ss_pred CCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---C
Confidence 43322332444557788888754 2344443 22456777777655444444445567889999998888877743 3
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc-CC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-KE 640 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~ 640 (1132)
...|...|+..........+... ....+++..+ .++.+. ..+.|...|..+++....+.... .....+++. +.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~ 266 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQ 266 (619)
T ss_dssp TCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGG
T ss_pred CCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccc
Confidence 56799999875433322221222 2345666544 455543 66788888888777655554321 122333332 21
Q ss_pred CCEEEEEeCC--------CcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCC
Q 001176 641 GSLLAVTTSD--------NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 712 (1132)
Q Consensus 641 ~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 712 (1132)
.+-. +... ..+.+-....+ .+.+.-.. + +.+.+
T Consensus 267 ~qp~--~~n~C~~~ng~Cs~lCl~~~~~~---------------------------~~~C~C~~-g----~~l~~----- 307 (619)
T 3s94_A 267 RQPN--ATNPCGIDNGGCSHLCLMSPVKP---------------------------FYQCACPT-G----VKLLE----- 307 (619)
T ss_dssp GSCC--CCCTTTTTGGGCSSEEEECSSTT---------------------------SEEEECCT-T----CCBCT-----
T ss_pred cCCC--ccccccCCCCcccceEECCCCCC---------------------------CceEeCCc-h----heecc-----
Confidence 1000 0000 00111000000 00000000 0 00000
Q ss_pred CCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEee-cccc
Q 001176 713 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL-ASNA 791 (1132)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg 791 (1132)
....+......+++.+..+.|+..++....... ..++.. .-..+..++|.+.+..|..+ ...+
T Consensus 308 -----------d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~----~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 308 -----------NGKTCKDGATELLLLARRTDLRRISLDTPDFTD----IVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp -----------TSSCBCSSCSEEEEEEESSCEEEEESSSTTCCC----EECCCS-CCSSEEEEEEETTTTEEEEEETTTT
T ss_pred -----------cCcccCCCCceEEEEEcccceEEEecCCCccce----eEEecc-ccCccEEEEEEcCCCeEEEEeCCCC
Confidence 111111122345555556677777776432211 112211 22457789999865555544 4456
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCe
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK 869 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~ 869 (1132)
.|..++.... ........+ -.....+++...+..|..+. .+.|.+.++....
T Consensus 372 ~I~r~~~~g~----------------------~~~~v~~~~----~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 372 AIRRSFIDGS----------------------GSQFVVTAQ----IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EEEEEETTSC----------------------SCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEEcCCC----------------------ccEEEEECC----CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 6766654321 000000111 23467899998777666665 5889999987553
Q ss_pred EEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEc-CCCcEEE
Q 001176 870 VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCM 947 (1132)
Q Consensus 870 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D~~i~i 947 (1132)
....+...-.....|++.|..|.+..+-. ..+.|...++............-...++|++++++..|..+. ..+.|..
T Consensus 426 ~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~ 505 (619)
T 3s94_A 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEV 505 (619)
T ss_dssp CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEE
Confidence 32223334466899999994455544432 235666666653332222233345678999998776666554 5577888
Q ss_pred EECCCcc
Q 001176 948 WSIDKWE 954 (1132)
Q Consensus 948 wd~~~~~ 954 (1132)
.+++...
T Consensus 506 ~~~dG~~ 512 (619)
T 3s94_A 506 MNTDGTG 512 (619)
T ss_dssp EESSSCC
T ss_pred EecCCCc
Confidence 8887644
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.7e-10 Score=123.31 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=112.3
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
++..+++++.||.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678899999999999999999987653 333 4555666667777 677788999999999999988777654321
Q ss_pred CeEEEEeeccC-CccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 496 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 496 ~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
... ..+|.- .+..+++++.|+.++.||..+++.+..+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 011111 23578888999999999999988877665443 2345678888888764 678999999999
Q ss_pred ceeeeeccccCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
+.+..+.... ....++..+. ..+++++.+|.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876654321 1222333332 5677888999999999999998887764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=0.0006 Score=86.48 Aligned_cols=283 Identities=6% Similarity=0.028 Sum_probs=146.2
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC----CCeEEE
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 422 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~las 422 (1132)
.|+.+-.+| +++.|+..|.=.+|.+.....-....+.+-+ --..-++|.+++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 556666566 5888888888888887654321000011100 0124467888777532 234554
Q ss_pred Ee---CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeEEEEec--CCC
Q 001176 423 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHE 494 (1132)
Q Consensus 423 ~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~h~ 494 (1132)
++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+.+..+.+ .|+.+.. ..+..+. +-.
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNG-EEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEET-TEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeC-Cccccccccccc
Confidence 43 468888876443222222223332 24566665432 223 5565555555 4555422 2222221 221
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+.++++..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1122222211111 2222222 2346666665544454555433 3566666543 4555553 24577777766
Q ss_pred CceeeeeccccCCceEEEEEeCC------CCEEEEEEc-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC--CCCEE
Q 001176 574 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLL 644 (1132)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 644 (1132)
++........-...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54332222122337999998763 368888885 99999999998777765544321 1233443332 34578
Q ss_pred EEEeCCCcEEEEEc
Q 001176 645 AVTTSDNGIKILAN 658 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~ 658 (1132)
.+|-.||.+.-+.+
T Consensus 621 ~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 621 LCALGDGALFYFGL 634 (1158)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 88888888766654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-08 Score=105.57 Aligned_cols=266 Identities=11% Similarity=0.019 Sum_probs=171.4
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...+.++.+.++|. +..|+.+ |..+|. +++.+... ...........+. +..|..
T Consensus 59 ~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~-------------------~~~~~~~~~~~~~--~~~l~v 112 (330)
T 3hxj_A 59 EIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRF-------------------DTKKAIVSDFTIF--EDILYV 112 (330)
T ss_dssp GEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGS-------------------CC-----CCEEEE--TTEEEE
T ss_pred CCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEE-------------------ECCCCcccCceEE--CCEEEE
Confidence 34567788888886 3444444 888886 55543221 0111112222333 556777
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
++.++.|..+|.. ++... ....+...+.++...+++. ++.++.++.|..+|.. ++.+..+......+.++..
T Consensus 113 ~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp ECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred EecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 8888999999988 55433 2333444567777777776 6667888999999988 8877776655555666665
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
.. ++. +..++ +.|..+| .++............+.++...++|...+... ++.+..+|. +++.+..+..
T Consensus 185 d~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 185 GK--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp CT--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEEC
T ss_pred cC--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeC
Confidence 33 334 44444 8899999 66666666665556778888888887665442 456888874 5666665554
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
... .+..+.+.+++ .+..++.+|.|..+|. +++.+..+.... ..+.++...++|. |..++.+|.+++.....
T Consensus 253 ~~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 253 GKR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SSC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 332 33445555555 5677778889999996 677777666543 2567788877776 56688999999876543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=0.0005 Score=81.59 Aligned_cols=491 Identities=8% Similarity=-0.008 Sum_probs=259.6
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE-eCCCeEEEEEecC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNP 436 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~dg~i~iwd~~~ 436 (1132)
|+++ ..+.|+.-++.+...... + .+. .-..+..++|++++..|..+ ..++.|..+++++
T Consensus 9 Ll~s--~~~~I~~i~l~~~~~~~~--~---------------~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 9 LLFS--RRADIRRISLETNNNNVA--I---------------PLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp EEEE--ETTEEEEEESSCTTCEEE--C---------------CCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE--eCCcEEEEECCCCCcceE--E---------------EcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 4444 357888888876532110 0 011 23467899999976665544 5578899999876
Q ss_pred CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-e
Q 001176 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-A 515 (1132)
Q Consensus 437 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s 515 (1132)
..... .+.........+++.+.+.+ +.++-...+.|.+.++........+...-....+|++.|.. |.++++- +
T Consensus 69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g 143 (628)
T 4a0p_A 69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE-GFMYWTEWG 143 (628)
T ss_dssp CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT-TEEEEEECS
T ss_pred CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC-CeEEEeCCC
Confidence 53221 12222245678999887765 45566667899999976543322232344567899998754 2444443 2
Q ss_pred cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 516 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
..+.|...+++......... .......+++++++..|+.+-. +.+.|..+|+..... ..+..... ....+++..
T Consensus 144 ~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~ 217 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ 217 (628)
T ss_dssp SSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET
T ss_pred CCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC
Confidence 35678888877655444333 4557889999999888887753 467899999875443 33333222 345677764
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccc
Q 001176 596 TRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAM 673 (1132)
Q Consensus 596 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (1132)
..++.+. ..+.|...|..+++....+..... ....+.. ++..+. +..... ..++ .+.........
T Consensus 218 --~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~~n~C~-----~~ng-~C~~~C~~~~~ 284 (628)
T 4a0p_A 218 --DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---GWNECA-----SSNG-HCSHLCLAVPV 284 (628)
T ss_dssp --TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---CCCTTT-----TTGG-GCSSEEEEETT
T ss_pred --CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---cceEec-----cCCC-CcchhhhcCCC
Confidence 3555544 578899999877776666543211 2333332 221110 000000 0000 00000000000
Q ss_pred ccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCC
Q 001176 674 DKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDIS 753 (1132)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 753 (1132)
. .+.+.-.. | +.+.++ ...+.. ...+++.+....|+-..+....
T Consensus 285 ~--------------~~~C~C~~---g--~~l~~d----------------~~~C~~-~~~~Ll~s~~~~i~~i~l~~~~ 328 (628)
T 4a0p_A 285 G--------------GFVCGCPA---H--YSLNAD----------------NRTCSA-PTTFLLFSQKSAINRMVIDEQQ 328 (628)
T ss_dssp T--------------EEEEECST---T--CEECTT----------------SSCEEC-CSSEEEEEETTEEEEECCCTTC
T ss_pred C--------------CeeEEcCC---C--cEeccc----------------CCcCcc-ccceeeeeccceEEEEeccccc
Confidence 0 00000000 0 000000 001111 1234444445555555444221
Q ss_pred CCCcceEEecCCcccccceEEEEEecCCceEEeec-ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCC
Q 001176 754 DPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 832 (1132)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 832 (1132)
.. ...++.. .-..+..++|.+....|..+. ..+.|..++...... ..++.....+
T Consensus 329 ~~----~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~~~~~ 384 (628)
T 4a0p_A 329 SP----DIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVSSVPS 384 (628)
T ss_dssp CC----CEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC-----
T ss_pred Cc----eEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEccccc
Confidence 11 1112211 234577899988666565443 356666654321100 0011000000
Q ss_pred CCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEe-eCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEE
Q 001176 833 SKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYN 907 (1132)
Q Consensus 833 ~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd 907 (1132)
... ...+..+|+...++.|..++ .+.|.+.+++. +....+ ........+|++.|..|.++.+-.... .|...+
T Consensus 385 ~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~ 462 (628)
T 4a0p_A 385 QNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAA 462 (628)
T ss_dssp ----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred ccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEe
Confidence 001 34578999999888776665 58899999864 444343 344567899999995555555433222 466666
Q ss_pred cccceeeeeeccccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCcc
Q 001176 908 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWE 954 (1132)
Q Consensus 908 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~~~ 954 (1132)
+............-...+.|++.+++..|..+. ..+.|...+++...
T Consensus 463 ~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 543332222332334578999999877666554 45789999987644
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-08 Score=110.94 Aligned_cols=234 Identities=11% Similarity=0.046 Sum_probs=158.7
Q ss_pred eCCCEEEEee--CCeEEEEECCCCeEEEEeeCCC-CCeEEEEE-e-CCCCCeEEEEe------------------CCCcE
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPP-PAATFLAF-H-PQDNNIIAIGM------------------EDSSV 903 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~-s-p~~~~~lasg~------------------~dg~v 903 (1132)
+||+++.+.. ++.|.+.|+.+.++...+.-.. ..+..+++ + | ++.++.+++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999999887 5779999999999888665332 45788888 5 8 778887774 34679
Q ss_pred EEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCC--------------------------------------cE
Q 001176 904 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA--------------------------------------QL 945 (1132)
Q Consensus 904 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~--------------------------------------~i 945 (1132)
.+.|..+.+...++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888876322 346788999999999887553 35
Q ss_pred EEEECCC--cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCC-------------ceeecC
Q 001176 946 CMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE-------------CSRSWS 1008 (1132)
Q Consensus 946 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~-------------~~~~~~ 1008 (1132)
.+.|..+ +... ...+.. + ....++.++|||++++++ .+.+|.++|+... ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5666655 2210 001111 1 235689999999999996 4688999999422 122222
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------cceecccCCCccccccccCCCCCCcEEEEeCCC
Q 001176 1009 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1078 (1132)
Q Consensus 1009 ~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 1078 (1132)
. ...-..++|+|||...++.-.|+.|.+||+++ ...+.++.. +|.| +|......+..+|
T Consensus 329 v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqp-----Gh~~~~~g~t~~~- 397 (595)
T 1fwx_A 329 L----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQP-----GHLKTVMGETLDA- 397 (595)
T ss_dssp C----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCE-----EEEEETTTTSTTC-
T ss_pred C----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccc-----ccceeccceEeCC-
Confidence 2 45688999999994445567899999999987 334444432 1222 2222222345577
Q ss_pred CCCeEEEEeCCC--cE-----------EEEecCCCc
Q 001176 1079 EPNQIALGMSDG--AV-----------HVVEPSDAE 1101 (1132)
Q Consensus 1079 ~~~~l~s~~~Dg--~i-----------~vW~~~~~~ 1101 (1132)
||++|+++..-. ++ .+.|++.++
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 889999876533 33 789997666
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-05 Score=84.56 Aligned_cols=224 Identities=10% Similarity=0.021 Sum_probs=145.2
Q ss_pred cCeEEEEEcCCCCeEEEE-eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 406 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
..+..++|++++..|..+ ..++.|..++.+++.... .+.........+++++++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 357799999976655554 457899999998754321 12222246789999998664 4556666789999997643
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
...............+++++.. +.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 3222222222457889998743 234444433 468888888754433333333456789999999888877653 4
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
.+.|..+|.........+.+. . ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 678999998765443333322 2 34556654 45666655 56899999999999988886432 1236788888876
Q ss_pred C
Q 001176 642 S 642 (1132)
Q Consensus 642 ~ 642 (1132)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-06 Score=103.83 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=86.1
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCe----------E-EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW----------C-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~----------v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
..++.++.++.|.-+|..+++.+..+...... + ..+++ ++..++.++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 56777788889999999888888776543221 0 11222 2456666653 788999999999998
Q ss_pred eeeccccCC---ceEE-EEEeCCCCEEEEEEc------CCeEEEEECCCCeeEEEEeCCCCC------------------
Q 001176 578 RTYSGFRKR---SLGV-VQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDADGGL------------------ 629 (1132)
Q Consensus 578 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 629 (1132)
..+...... .+.+ ..+ .+..++++.. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 877653110 1111 111 1345565543 589999999999999887632110
Q ss_pred -----------CCcceEEEcCCCCEEEEEeCCCc
Q 001176 630 -----------PASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 630 -----------~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
.....+++.++..+++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124678887788888876653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-09 Score=120.86 Aligned_cols=183 Identities=11% Similarity=0.054 Sum_probs=104.6
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-
Q 001176 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN- 539 (1132)
Q Consensus 461 d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~- 539 (1132)
++. .+++++.|+.|+.||..+|+.+.++.. +.+.+..+.. ++..+++++.||.|+.||..+++.+..+..+..
T Consensus 8 ~~~--~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PET--LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTT--EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCC--EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 355 688999999999999999999988876 4444433332 335777788999999999988877665543321
Q ss_pred eEE-EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 540 WCT-MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 540 ~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
.+. +..+. ++..+++++. ++.++.||..+|+.+..+..+.. ..++|++..+++++.++.|+.||..+++
T Consensus 82 ~~~~sp~~~-~~~~v~~g~~----dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMGKK----QDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp HHTTCSCC------CCCCEE----EEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ccccCceEe-cCCEEEEEeC----CCEEEEEECCCCcEEEEecCCCc-----ccccccCCEEEEEecCCEEEEEECCCCC
Confidence 110 00111 3445555543 67899999999999887765432 3456788899999999999999999998
Q ss_pred eEEEEeCCCCCCCcceEEEcCCC---CEEEEEeCCCcEEEEEcCCcce
Q 001176 619 MLTTVDADGGLPASPRLRFNKEG---SLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
.+..+.... ....++..+. ..+++++.+|.|..||..+++.
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 766554221 1223333332 5677889999999999999843
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-05 Score=82.46 Aligned_cols=240 Identities=9% Similarity=-0.015 Sum_probs=149.1
Q ss_pred CeEEEEeCCCeEEEEEecCCCcee--eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++-...+.|..+|+..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 34555543 478889988754210 01112222345789999997764 555666788999999876554333333335
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
....+++++.+ +.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++...
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC-
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCC-
Confidence 67889987753 2566666677899999987554433333333567899999977776665421 11467888887633
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGI 653 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 653 (1132)
....+..........+++++++..|+.+. ..+.|.++|.........+... .....++.. +..|+.+. ..+.|
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~~v 231 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTNSV 231 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCCeE
Confidence 22322211122577899999887777665 5689999999865544444321 133566654 44555444 56899
Q ss_pred EEEEcCCcceeeeec
Q 001176 654 KILANSDGVRLLRML 668 (1132)
Q Consensus 654 ~iw~~~~~~~~~~~~ 668 (1132)
..++..++ +....+
T Consensus 232 ~~~d~~~g-~~~~~i 245 (267)
T 1npe_A 232 IAMDLAIS-KEMDTF 245 (267)
T ss_dssp EEEETTTT-EEEEEE
T ss_pred EEEeCCCC-CceEEE
Confidence 99999888 444444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-06 Score=91.03 Aligned_cols=212 Identities=11% Similarity=0.006 Sum_probs=141.2
Q ss_pred CeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCC-CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 839 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
....++|++|+.+.++.+ +++|+++|+.+++.+..+.-... ....+++.. +++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999875555543 47899999999999988763222 233566653 455555667889999999999998
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeE
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 994 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v 994 (1132)
.++..-... ...+++||+.|+.+..++.|.++|..+.+......+... +
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~------------------~----------- 148 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN------------------G----------- 148 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET------------------T-----------
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC------------------C-----------
Confidence 888532122 234566888777777788999999988653221111100 0
Q ss_pred EEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccc--cccCCCCCCcEE
Q 001176 995 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT--YAVSSNTAHPLV 1072 (1132)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~ 1072 (1132)
.. -...+.+.|. ||+..+....++.|.+.|..+++.+..+......+. .........+..
T Consensus 149 -------~p----------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 149 -------HR----------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp -------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred -------cc----------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 00 2245677777 776555555688999999999999988864311000 000111246679
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1073 IAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1073 ~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++|+|++.++++++...+++.+-++...+
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999666678888889999999987654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-06 Score=96.77 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=68.1
Q ss_pred cEEEEEec-CCeEEEEEc-CCCCceEEecCCCCe-----------EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 509 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 509 ~~l~s~s~-dg~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
..++.++. ++.|.-+|. .+++.+......... ...+++ ++..++.++. ++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 45666666 788888888 777777665443210 011222 3456666643 7789999999999
Q ss_pred eeeeeccccC---CceE-EEEEeCCCCEEEEEEc------CCeEEEEECCCCeeEEEEeC
Q 001176 576 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 576 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 625 (1132)
.+..+..... ..+. ..... +..+++++. ++.|+.+|..+++.+..+..
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 8877653220 0111 11111 345666654 79999999999999887764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00011 Score=86.76 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=120.2
Q ss_pred EEEEcCCCcEEEEECCCCeEEEEecCCCCCe---------EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001176 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537 (1132)
Q Consensus 467 l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v---------~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 537 (1132)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4555554449999999999987775432210 11222 1257888899999999999999988765543
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEecCC--CCCCeEEEEeCCCCceeeeeccccC---------------------
Q 001176 538 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 585 (1132)
Q Consensus 538 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 585 (1132)
.. .+. ...... +|+ .+++++... ..++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 455543211 1267899999999998776543110
Q ss_pred -------------------CceEEEEEeCCCCEEEEEEc--------------------C----CeEEEEECCCCeeEEE
Q 001176 586 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 586 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 622 (1132)
..-...+++|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123567777788887663 2 6899999999999988
Q ss_pred EeCCCCC----CCcce-EEEc---CCCC---EEEEEeCCCcEEEEEcCCccee
Q 001176 623 VDADGGL----PASPR-LRFN---KEGS---LLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 623 ~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+|+.+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 7643211 01111 2222 4674 7888999999999999999443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.8e-06 Score=85.37 Aligned_cols=209 Identities=8% Similarity=-0.027 Sum_probs=140.1
Q ss_pred cccceEEeecCCCC--eeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 332 LTKTVVRTLNQGSN--VMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~--V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.+.+.+.++.|... ...++|+|||. +.++.+ .++.|.+.|+.+++.+.... +..+ ..
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~f 67 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YF 67 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CC
T ss_pred cCceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cc
Confidence 34567888887644 68999999975 555544 36899999999998765311 1111 11
Q ss_pred eEEEEEcCCCCeEEEE-eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 408 VNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 408 V~~v~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
...+++. |+.|..+ -.++.+.++|..+.+.+.. +..-.. ....+++||+. ++.+..++.|.++|..+.+.
T Consensus 68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~---i~~g~~--~g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN---FTHQMK--DGWGLATDGKI--LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE---EECCSS--SCCEEEECSSS--EEEECSSSEEEEECTTTCCE
T ss_pred eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE---EECCCC--CeEEEEECCCE--EEEECCCCeEEEEECCCCcE
Confidence 2234454 5555444 4578999999998876653 321111 12446678885 44445688999999999998
Q ss_pred EEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------------CCeEEEEEEcC
Q 001176 487 QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSA 548 (1132)
Q Consensus 487 ~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~ 548 (1132)
+.++.-.. ...+.+.+. ++...+....++.|.+.|..+++....+... ......++|+|
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 88775321 236677775 3456666667899999999998877766542 13568999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
+++.+++++. ..+.++..++...
T Consensus 216 ~~~~lfVTgk---~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 216 ENKRIFVTGK---LWPKLFEIKLHLV 238 (266)
T ss_dssp TTTEEEEEET---TCSEEEEEEEEEC
T ss_pred CCCEEEEECC---CCCeEEEEEEecc
Confidence 9988887763 3566777776543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-05 Score=93.23 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=124.2
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeEEEEecCCCCC-----------eEEEEeeccCC--ccEEEEEecCCeEEEEEcCCCCc
Q 001176 466 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEAP-----------VYSVCPHHKES--IQFIFSTAIDGKIKAWLYDYLGS 530 (1132)
Q Consensus 466 ~l~s~~~-dg~v~vwd~-~~~~~~~~~~~h~~~-----------v~~i~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 530 (1132)
.++.++. ++.|.-+|. .+|+.+-++...... ...+++.|..+ ...++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666777 889999999 899998777533211 11233322221 12388888999999999999988
Q ss_pred eEEecCCCC----eEEE-EEEcCCCCEEEEEecCC--CCCCeEEEEeCCCCceeeeeccccCC-----------------
Q 001176 531 RVDYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR----------------- 586 (1132)
Q Consensus 531 ~~~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~----------------- 586 (1132)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|.++|+.+..+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776544321 1111 111 134 444443111 12678999999999988776543210
Q ss_pred --------------------ceEEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeeEEEEeCCCCCC
Q 001176 587 --------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 587 --------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
.-...++.++...++.+..+ +.|..+|..+|+.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00135667777888887655 389999999999998876543210
Q ss_pred ----Ccce---EEEc-CCC---CEEEEEeCCCcEEEEEcCCccee
Q 001176 631 ----ASPR---LRFN-KEG---SLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 631 ----~v~~---~~~s-~~~---~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.... +... .+| ..++.++.+|.+.++|..+++.+
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 1111 1222 467 56777889999999999999443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-05 Score=97.29 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=172.1
Q ss_pred EEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCe-EEEEEcCCCCeEEEEeCCCeEEEEEecCC
Q 001176 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPT 437 (1132)
Q Consensus 359 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~spdg~~las~~~dg~i~iwd~~~~ 437 (1132)
+++++.++.|.-+|..+|+.+ |.............. ....+ ..+++ ++..|++++.|+.|..+|..+|
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG 137 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVKARTS--CCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTG 137 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGGGGGC--TTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTC
T ss_pred EEEECCCCeEEEEECCCChhc-------eEECCCCCccccccc--cccCCccceEE--ECCEEEEEcCCCEEEEEECCCC
Confidence 555667899999999999864 433221110000000 00000 11222 3567888889999999999999
Q ss_pred Cceeeeeeeecc--cCCEEEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeEEEEecCCC---C-----------
Q 001176 438 GELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHE---A----------- 495 (1132)
Q Consensus 438 ~~~~~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~h~---~----------- 495 (1132)
+.+-.... ... ...+.+--...++. ++.+.. ++.|..+|..+|+.+.++.... .
T Consensus 138 ~~~W~~~~-~~~~~~~~~~~~P~v~~~~---v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 213 (668)
T 1kv9_A 138 KAIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA 213 (668)
T ss_dssp CEEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred CEeeeecc-CCCCCcceecCCCEEECCE---EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence 87653321 111 01111110112443 444432 5899999999999988775210 0
Q ss_pred -----------------CeEEEEeeccCCccEEEEEecCC-------------------eEEEEEcCCCCceEEecCC--
Q 001176 496 -----------------PVYSVCPHHKESIQFIFSTAIDG-------------------KIKAWLYDYLGSRVDYDAP-- 537 (1132)
Q Consensus 496 -----------------~v~~i~~~~~~~~~~l~s~s~dg-------------------~i~~wd~~~~~~~~~~~~~-- 537 (1132)
....+++.+.. .+++.++.++ .|..+|.++++.+..+...
T Consensus 214 ~~~~~g~~~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~ 291 (668)
T 1kv9_A 214 AKTWQGDQYWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG 291 (668)
T ss_dssp HTTCCSSCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred cccCCccceeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCC
Confidence 01124554433 6777777666 4999999999988776542
Q ss_pred C-------CeEEEEEEcCCCC---EEEEEecCCCCCCeEEEEeCCCCceeeeeccccC-----------C----------
Q 001176 538 G-------NWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-----------R---------- 586 (1132)
Q Consensus 538 ~-------~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~---------- 586 (1132)
. .+.....+..+|+ .++.+. .++.++++|..+|+.+........ .
T Consensus 292 ~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 292 DSWDFTATQQITLAELNIDGKPRKVLMQAP----KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred ccccccCCCCcEEEEeccCCcEEEEEEEEC----CCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 1 2222223334665 455553 488999999999998743321110 0
Q ss_pred --------------ceEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCC
Q 001176 587 --------------SLGVVQFDTTRNRFLAAG------------------------------------DEFQIKFWDMDN 616 (1132)
Q Consensus 587 --------------~v~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~~ 616 (1132)
....++++|+...+++.. .+|.|..||+.+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 011267888777766521 237899999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
++.+....... ......+...+.++++++.||.+++||..++ +.+..+
T Consensus 448 G~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~ 495 (668)
T 1kv9_A 448 QKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQF 495 (668)
T ss_dssp TEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred CcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC-hhheEe
Confidence 99988776542 2344455567889999999999999999999 444444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-06 Score=85.97 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=128.0
Q ss_pred CeeEEEEeeCCCEEEEee-CC--eEEEEECCCCeEEEEeeCCCCCeE--EEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 839 SAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
....+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.... ... .+++. ++++.+..-.++.+.+||..+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 34678898 676555555 55 79999999999998887533 333 35554 345555555688999999999999
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCe
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 993 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 993 (1132)
+.++.... .-..++ +|++.|+.+..++.|.++|..+.+......+.. +|+
T Consensus 120 ~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~------------------~g~--------- 169 (262)
T 3nol_A 120 VRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA------------------HGE--------- 169 (262)
T ss_dssp EEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEE------------------TTE---------
T ss_pred EEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc------------------CCc---------
Confidence 99887432 223444 577777766667889999998865322211100 000
Q ss_pred EEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccc-cCCCCCCcEE
Q 001176 994 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA-VSSNTAHPLV 1072 (1132)
Q Consensus 994 v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ 1072 (1132)
. -..++.+.|. +|++.|..-.++.|.+.|.++|+.+..+......+... ......-.-.
T Consensus 170 ---------~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNG 229 (262)
T 3nol_A 170 ---------E----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNG 229 (262)
T ss_dssp ---------E----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEE
T ss_pred ---------c----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEE
Confidence 0 1334556665 77766666578899999999999998887553222210 1122245568
Q ss_pred EEeCCCCCCeEEEEeCCCcE
Q 001176 1073 IAPHPSEPNQIALGMSDGAV 1092 (1132)
Q Consensus 1073 ~~~~p~~~~~l~s~~~Dg~i 1092 (1132)
++|+|+..+++++|-.=-.+
T Consensus 230 IA~dp~~~~lfVTGK~Wp~~ 249 (262)
T 3nol_A 230 IAWDKEHHRLFVTGKLWPKV 249 (262)
T ss_dssp EEEETTTTEEEEEETTCSEE
T ss_pred EEEcCCCCEEEEECCCCCce
Confidence 99999555555555443433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-06 Score=86.20 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=128.7
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeE--EEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
.....+.|+ ++.+..+.+ +|.|+++|+.+++.+..+ - ..... .+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 334678887 344444444 789999999999988887 2 23333 35554 3455555667889999999999999
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeE
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 994 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v 994 (1132)
.++..- ..-+.++ +|++.|+.+..++.|.++|..+.+......+.. ++
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~g----------- 177 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------RG----------- 177 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT-----------
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------CC-----------
Confidence 988743 3334555 578888877778899999998866432211110 00
Q ss_pred EEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccc--cCCCCCCcEE
Q 001176 995 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA--VSSNTAHPLV 1072 (1132)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ 1072 (1132)
.. -..++.+.|. +|++.|..-.++.|.+.|.++|+.+..+......+... ......-.-.
T Consensus 178 -------~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNG 239 (268)
T 3nok_A 178 -------QP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNG 239 (268)
T ss_dssp -------EE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEE
T ss_pred -------cc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEE
Confidence 00 2245566766 77666655568899999999999998887542221110 1122245668
Q ss_pred EEeCCCCCCeEEEEeCCC
Q 001176 1073 IAPHPSEPNQIALGMSDG 1090 (1132)
Q Consensus 1073 ~~~~p~~~~~l~s~~~Dg 1090 (1132)
++|+|...++++||-.=-
T Consensus 240 IA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 240 IAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp EEECTTTCCEEEEETTCS
T ss_pred EEEcCCCCEEEEeCCCCC
Confidence 999996667777765433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-05 Score=90.29 Aligned_cols=374 Identities=10% Similarity=0.007 Sum_probs=202.3
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeEEEEecCCCC-C---------e-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001176 466 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-P---------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 532 (1132)
Q Consensus 466 ~l~s~~~-dg~v~vwd~-~~~~~~~~~~~h~~-~---------v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 532 (1132)
.++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666776 889999999 89999877653221 0 0 11222 22578888899999999999998887
Q ss_pred EecCCCC----eEEE-EEEcCCCCEEEEEecCC--CCCCeEEEEeCCCCceeeeeccccCC-------------------
Q 001176 533 DYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 586 (1132)
Q Consensus 533 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 586 (1132)
....... .+.+ ... .++ .+++++... ..++.|+.+|..+|+.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 134 455543210 01678999999999988776542210
Q ss_pred ------------------ceEEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeeEEEEeCCCCC---
Q 001176 587 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGL--- 629 (1132)
Q Consensus 587 ------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 629 (1132)
....+++.++...++.+..+ +.|..+|..+++.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00235677777777776532 36999999999998887643211
Q ss_pred -CCcce---EEEcCCCC---EEEEEeCCCcEEEEEcCCcceeeeeccccc--cccccCCCCCCCCCcccccccCCCcccc
Q 001176 630 -PASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRA--MDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 630 -~~v~~---~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
..+.. +....+|+ .++.++.+|.+.++|..+++. +....... .....+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~~~~~w~~~~---------------------- 354 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL-IVAEKVDPAVNVFKKV---------------------- 354 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEE----------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE-EeeecccCCccccccc----------------------
Confidence 01112 22224674 677888899999999999943 33322110 000000
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
.. ..++.+.... .. ........+..|.......-..++++|+
T Consensus 355 ---d~-------------------------~~g~p~~~~~--------~~--~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 355 ---DL-------------------------KTGTPVRDPE--------FA--TRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp ---CT-------------------------TTCSEEECGG--------GC--CCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred ---cc-------------------------cCCceecccc--------cC--CCCCCCceEECCCCccccCCCCceECCC
Confidence 00 0000000000 00 0000001111221111111245788998
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeE
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKV 860 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i 860 (1132)
...+.+...+....++.... ....+... -..-..+..+|.+. ....+|.|
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~------------------~~~~g~~~----------~g~~~~~~~~~~~~--~~~~~g~l 446 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFML------------------PYRAGQFF----------VGATLAMYPGPNGP--TKKEMGQI 446 (571)
T ss_dssp TTEEEEEEECEEEEEEECCC------------------CCCTTSCC----------CCEEEEEEECTTST--TSCCCEEE
T ss_pred CCEEEEEchhcccccccccc------------------ccccCCcc----------ccccceeccCcccc--CCCCCCeE
Confidence 88888877765544443210 00001000 00011122233322 00125789
Q ss_pred EEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCCCEEEE
Q 001176 861 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVS 938 (1132)
Q Consensus 861 ~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 938 (1132)
..||..+++.+.++.... .+....+.. .+.++++++.||.|+.||..+|+.+.+++..... -.-+.+..+|+.++.
T Consensus 447 ~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 999999999887776332 222233333 3456777999999999999999999887643321 122345567765443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-06 Score=84.18 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=128.3
Q ss_pred EEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCCCeE--EEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 453 VNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 453 v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~--~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
...+.|+ ++. ++.+.+.+| .|+++|+++++.+.++.-.. ... .+++ .++ .+.+..-.++.+.+||..+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCC-EEEEEEeeCCEEEEEECccC
Confidence 4788998 554 666666666 99999999999988876432 333 3444 332 45555567999999999999
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC----CceEEEEEeCCCCEEEEEE
Q 001176 529 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 529 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 604 (1132)
+.+..+..... ...+++|++.|+... +.+.|.++|..+.+.+.++..... ..++.+.|. +|..++..-
T Consensus 118 ~~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 118 RQVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CEEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 88887765432 223446777777652 467799999999998888765321 134556776 565443344
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCC----------CCCcceEEEcCCCCEEEEEeC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGG----------LPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.+..|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999999999999875321 124578999998888777765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-05 Score=87.22 Aligned_cols=236 Identities=13% Similarity=0.039 Sum_probs=146.8
Q ss_pred eeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC--------------------CCCCeEEEEEeCCCCCeEEEEe
Q 001176 840 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS--------------------PPPAATFLAFHPQDNNIIAIGM 898 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~~~~~lasg~ 898 (1132)
..+++++++|+++.++. ++.|..||..+++.. .+.. ....+..+++.+++++ |.++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 46788999998666665 789999998765443 2211 0135788999973454 44455
Q ss_pred CCCcEEEEEcccceeeeeec----c-ccCCeeEEEEcC-CCCEEEEEcC-----------------CCcEEEEECCCccc
Q 001176 899 EDSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWEK 955 (1132)
Q Consensus 899 ~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~sp-dg~~l~s~~~-----------------D~~i~iwd~~~~~~ 955 (1132)
..+.|..+|..+++. ..+. + .......+++.+ +|+..++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555588888776542 2221 1 123467899999 9988877543 36788888876542
Q ss_pred ccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCCc---eeecCCCCCCCCCeEEEEEccCCCEEE
Q 001176 956 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLEC---SRSWSPKDALPAPISSAIYSCDGLLVY 1030 (1132)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~---~~~~~~~~~h~~~i~~i~~s~dg~~la 1030 (1132)
.. ..... .....++++++|++|.++ ..+.|.+|++.+.. ...+... .+ ...+++.++|.+.+
T Consensus 178 ~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEE
T ss_pred EE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEE
Confidence 21 11111 234679999999977775 45789999985321 1222111 23 67899999999776
Q ss_pred EEec----------CCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCC
Q 001176 1031 AGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1100 (1132)
Q Consensus 1031 s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~ 1100 (1132)
+... .+.|..+|.. |+.+..+......+ -..+..+++. ++++.+++...+.|..+++...
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~-------~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA-------GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT-------TSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc-------cccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 6554 4678888875 77666554221100 1234455552 5667777777889999998654
Q ss_pred c
Q 001176 1101 E 1101 (1132)
Q Consensus 1101 ~ 1101 (1132)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-05 Score=90.31 Aligned_cols=166 Identities=12% Similarity=0.145 Sum_probs=100.4
Q ss_pred EEEEeCCCCCeEEEEeCC----------------CcEEEEEcccceeeeeeccccC----------CeeEEEEc-CCC--
Q 001176 883 FLAFHPQDNNIIAIGMED----------------SSVQIYNVRVDEVKTKLKGHQN----------RITGLAFS-PTL-- 933 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~h~~----------~V~~l~~s-pdg-- 933 (1132)
.+++.+ ...++..++.+ +.|.-+|..+|+.+..++.... ++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55666666655 3799999999998877653221 121 2222 567
Q ss_pred -CEEEEEcCCCcEEEEECCCcccccceeeeC----------CCCC---------------------CCCCCCceeEEECC
Q 001176 934 -NALVSSGADAQLCMWSIDKWEKLKSRFIQA----------PAGR---------------------QSPLVGETKVQFHN 981 (1132)
Q Consensus 934 -~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~----------~~~~---------------------~~~~~~v~~~~~s~ 981 (1132)
+.++.++.+|.+.+.|..+++.+-...... ..+. ......-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 467778899999999999988654322111 0000 00001123567788
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEeC-CCCceeecCCCCCCCCCeEEE
Q 001176 982 DQTHLLVV----------------------------------------HESQISVYDS-KLECSRSWSPKDALPAPISSA 1020 (1132)
Q Consensus 982 dg~~l~~~----------------------------------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i 1020 (1132)
+..++++. ..+.+..||+ +++.+-..... .++.+-
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g 478 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGG 478 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSB
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCc
Confidence 77766552 1246777777 45443332211 111111
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCcceecccCC
Q 001176 1021 IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 1021 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
.+.-.+.+++.++.||.++.||.++|+.+-++..
T Consensus 479 ~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 479 TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 1233567888899999999999999999988753
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.51 E-value=0.0072 Score=74.53 Aligned_cols=528 Identities=10% Similarity=0.042 Sum_probs=270.9
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..|.++....+|. |-.|+.+ -+..||..+...... .......|.++.. .+| .|..|
T Consensus 63 ~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 4688988888886 3344444 478899876532110 0012235777654 355 45556
Q ss_pred eCCCeEEEEEecCCCceeeeeee-e-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE-ecCC----CCC
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEI-D-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH----EAP 496 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l-~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h----~~~ 496 (1132)
+.+ -+..+|..+++... .... . -....|.++....+|. |..|+.. -|..+|..+++.... .... ...
T Consensus 119 t~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (758)
T 3ott_A 119 ALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLF 192 (758)
T ss_dssp ETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCC
T ss_pred cCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccce
Confidence 666 48888887654221 1000 0 1134688888887776 3335544 477888777664321 1111 124
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
|.++.... ++..|..|+. +-+..+|..+.............|.++....+|.+.+.. . . -+.+++..+++.
T Consensus 193 i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 193 VNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTPL 263 (758)
T ss_dssp EEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSCC
T ss_pred eEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCcE
Confidence 77776543 3344445553 467778876543322111223468888888888766543 2 2 288888876554
Q ss_pred eeeec------cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----CCCCCCCcceEEEcCCCCEEE
Q 001176 577 KRTYS------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----ADGGLPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 577 ~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~ 645 (1132)
..... ......|.++....+|...+ |+..| +.++.... ....+. .......|.++.-..+|.+.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi 339 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF 339 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE
Confidence 32111 11223588888887776544 54556 54443322 111111 011123577777777776544
Q ss_pred EEeCCCcEEEEEcCCcce-eeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 646 VTTSDNGIKILANSDGVR-LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
|+.+| +..++..++.. .+..+.
T Consensus 340 -Gt~~G-l~~~~~~~~~~~~~~~~~------------------------------------------------------- 362 (758)
T 3ott_A 340 -GGANG-LIRFTDPAGERHDAIWYR------------------------------------------------------- 362 (758)
T ss_dssp -EETTE-EEEESCTTSSCCCCEEEC-------------------------------------------------------
T ss_pred -eeCCc-ceeecccccccceeEEec-------------------------------------------------------
Confidence 55544 55555443210 000000
Q ss_pred CCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCC
Q 001176 725 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 804 (1132)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 804 (1132)
.... . .......|.++.-..+|..-+. +. +-+..|+.....+.
T Consensus 363 ------------------------~~~~--~---------~~l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 363 ------------------------MGDK--T---------YPLSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQFI 405 (758)
T ss_dssp ------------------------TTCS--S---------SCCSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEEE
T ss_pred ------------------------cCCc--C---------CCCCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcEE
Confidence 0000 0 0001234677777777764443 33 45666654321110
Q ss_pred CCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCC-----eEE---EEee-
Q 001176 805 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TMFM- 875 (1132)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~-----~~~---~~~~- 875 (1132)
.+... ....... ...|.++...++|.+.+....+-+.++|..+. ... ..+.
T Consensus 406 ------------~~~~~-------~~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 406 ------------HYNIV-------DNTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp ------------EEEEE-------CCC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred ------------EeecC-------CCcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccc
Confidence 00000 0000001 34688888877777666444667888885431 111 1111
Q ss_pred --C-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc---ccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 876 --S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 876 --~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
+ ....|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..++
T Consensus 466 ~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~ 542 (758)
T 3ott_A 466 HNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRIN 542 (758)
T ss_dssp GGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEEC
T ss_pred ccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEe
Confidence 1 223588999888 777765333345588889877764432211 13457888888888877654 444 88888
Q ss_pred CCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEc-cCCCE
Q 001176 950 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDGLL 1028 (1132)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s-~dg~~ 1028 (1132)
..+...... . ..+- +...+.++... +|.+.+.+ +..+..+|........+... ...+....+. +||.
T Consensus 543 ~~~~~~~~~---~-~~gl--~~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~- 610 (758)
T 3ott_A 543 PKDESQQSI---S-FGSF--SNNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKEDC- 610 (758)
T ss_dssp C--CCCCBC---C-CCC-----CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C---CCCCSEEEEETTTTE-
T ss_pred cCCCceEEe---c-ccCC--CccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC---CCceeeeEEECCCCc-
Confidence 776542211 1 1111 11346677653 66544444 55688888854444433211 2233444444 4665
Q ss_pred EEEEecCCcEEEEeCC
Q 001176 1029 VYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1029 las~~~dg~i~vwd~~ 1044 (1132)
|..|+.+|.+ .++.+
T Consensus 611 l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 611 VYLGGADGFG-ISHSN 625 (758)
T ss_dssp EEEECBSEEE-EEEC-
T ss_pred EEEecCCceE-EEChh
Confidence 5667777754 44543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.51 E-value=0.0074 Score=74.43 Aligned_cols=537 Identities=12% Similarity=0.092 Sum_probs=283.3
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...|.|+.-..+|... .|+.+| +..||-..-+ .+... -......|.++.-..+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~--------~~~~~----------~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQ--------QHFTY----------GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEE--------ECSCT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceE--------EEEcc----------CCCCCceEEEEEEcCCCc-EEE
Confidence 4579999999999733 344555 5566632111 00000 001235688888777764 555
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec----C-CCCCe
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE----G-HEAPV 497 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~-h~~~v 497 (1132)
|+.+| +..||..+.. ... ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. + ....|
T Consensus 79 gT~~G-l~~yd~~~~~-f~~--~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADR-YEQ--PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTE-ECC--CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCE-EEC--cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 7899987643 211 11112335777654 4554 4445555 6888998776543 331 1 23457
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC----CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.++.... ++.+. .++.+ -+..++..+...... ... ....|.++....++..|..++. +-+..+|..
T Consensus 149 ~~i~~d~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEEcC--CCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 7776543 33444 45544 567777665432211 111 1224888888877775555542 138889987
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC-----CCCCcceEEEcCCCCEEEEE
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 647 (1132)
+++... +.......|.++....+|...+ |+. +-+.+++..+++......... ....|.++....+|.+ -.|
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiG 295 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLG 295 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEE
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEE
Confidence 765432 2211222578888887776555 444 458888887665432221110 1124677777777764 445
Q ss_pred eCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCc
Q 001176 648 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 727 (1132)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1132)
+..| +.++... . .+..+....
T Consensus 296 T~~G-l~~~~~~-~--~~~~~~~~~------------------------------------------------------- 316 (758)
T 3ott_A 296 TDYG-ISLSRYN-S--ALQFIPISQ------------------------------------------------------- 316 (758)
T ss_dssp ESSS-EEEECCC-C---CEEEEHHH-------------------------------------------------------
T ss_pred eCCc-ccccccC-C--ceeEEeccc-------------------------------------------------------
Confidence 5555 4433221 1 111000000
Q ss_pred ccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 728 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 728 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
. ........|.++....+|..-+. +.+| +..++.......
T Consensus 317 ---------------------~--------------~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--- 356 (758)
T 3ott_A 317 ---------------------I--------------TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--- 356 (758)
T ss_dssp ---------------------H--------------SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---
T ss_pred ---------------------C--------------CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---
Confidence 0 00001234667777777764444 3444 333432210000
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEee-C-----CCCCe
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-S-----PPPAA 881 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~-~-----~~~~i 881 (1132)
....+...... ..+ . ...|.++.-.++|.+.+.. ++.+..||..+++...... . ....|
T Consensus 357 ------~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v 421 (758)
T 3ott_A 357 ------DAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWT 421 (758)
T ss_dssp ------CCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSE
T ss_pred ------eeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceE
Confidence 00000000000 000 1 3468888888888766544 6689999988776533221 1 12457
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEEcccc------eee--eeec---c-ccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 882 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVD------EVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 882 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------~~~--~~l~---~-h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
.++...+ ++.+. .|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|
T Consensus 422 ~~i~~d~-~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d 499 (758)
T 3ott_A 422 YYIFEDT-AGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKIN 499 (758)
T ss_dssp EEEEECT-TSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEE
T ss_pred EEEEEcC-CCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEe
Confidence 8888776 55544 4777667888986531 111 1111 1 123588999999998877444445588899
Q ss_pred CCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEE
Q 001176 950 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLV 1029 (1132)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l 1029 (1132)
..+++... .. ..+ ......+.++....+|.+.+.+. +.+..|+........+....--...|.++... +|. |
T Consensus 500 ~~~~~~~~---~~-~~~-~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-l 571 (758)
T 3ott_A 500 PRTREVTK---LF-ADE-LTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-I 571 (758)
T ss_dssp TTTTEEEE---EC-TTT-SCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-E
T ss_pred CCCCceEE---ec-CCC-cCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-E
Confidence 87754221 11 011 00013467788888888776654 56888888444333332110013568888763 554 5
Q ss_pred EEEecCCcEEEEeCCCccee
Q 001176 1030 YAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 1030 as~~~dg~i~vwd~~~~~~~ 1049 (1132)
..++..| |..+|..+.+..
T Consensus 572 Wi~t~~G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 572 WVSTTNG-LWIIDRKTMDAR 590 (758)
T ss_dssp EEEESSC-EEEEETTTCCEE
T ss_pred EEECCCC-eEEEcCCCceeE
Confidence 5555555 888898876643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00019 Score=84.63 Aligned_cols=204 Identities=10% Similarity=-0.025 Sum_probs=121.6
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCC-------EEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~-------v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+..+++++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|.-+|..+|+.+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 3345455554448888998888654321 1111000 012233 234 577788899999999999999876
Q ss_pred ecCCCC----CeE-EEEeecc-CCcc-EEEEEe------cCCeEEEEEcCCCCceEEecCCCCeE---------------
Q 001176 490 FEGHEA----PVY-SVCPHHK-ESIQ-FIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWC--------------- 541 (1132)
Q Consensus 490 ~~~h~~----~v~-~i~~~~~-~~~~-~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v--------------- 541 (1132)
...... .+. +..+... .++. .+++++ .++.|.-+|..+++.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 653221 111 1111111 1222 566655 37899999999988776543321000
Q ss_pred --------------------------EEEEEcCCCCEEEEEecCC----------CC----------CCeEEEEeCCCCc
Q 001176 542 --------------------------TMMAYSADGTRLFSCGTSK----------EG----------ESHLVEWNESEGA 575 (1132)
Q Consensus 542 --------------------------~~~~~s~~~~~l~~~~~~~----------~~----------~~~i~~wd~~~~~ 575 (1132)
..+++.|+...++.+..+. .+ .+.|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 1345667777777665310 11 2689999999999
Q ss_pred eeeeeccc-cC--------CceEEEEEe-CCCC---EEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 576 IKRTYSGF-RK--------RSLGVVQFD-TTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 576 ~~~~~~~~-~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
.+..++.. ++ .++. +... .+|+ .++.++.+|.++++|..+|+.+......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 99887542 11 1111 2222 4664 6777889999999999999998776543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-05 Score=98.73 Aligned_cols=248 Identities=13% Similarity=0.070 Sum_probs=134.5
Q ss_pred CeeEEEEc-cCCCeEEEEEcCCC----cEEEEecCCC-ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 345 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 345 ~V~~~~~s-pdg~~lla~g~~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
.+...+|| |||++++++.+.+| +|+++|+.++ +.+.. . + ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 67889999 99996555554443 4999999988 63221 0 1 11234688999999
Q ss_pred eEEEEeCC-----CeEEEEEecCCCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCCCe-EE--E
Q 001176 419 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 488 (1132)
Q Consensus 419 ~las~~~d-----g~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~~~-~~--~ 488 (1132)
.|+....+ ..|.++++.++..... ..+. .+......+.|+|||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88877665 2577888877542211 1122 223456788999999953332222 24478889988752 12 3
Q ss_pred Eec-CCCCCeEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCceEE-ecCCCC--eEEEEEEcCCCCEEEEEecCC
Q 001176 489 TFE-GHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 489 ~~~-~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
.+. .......++.|+. ++.+++....+ ..|..+|+.+...... +..+.. .+..+.+. ++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE-e
Confidence 343 3445556655432 22444444443 3566677664222122 222322 44555554 556554442 2
Q ss_pred CCCCeEEEEeC-------CCCceeeeeccccCCceEEEEE----eCCCCEE-EEEEc---CCeEEEEECCCCee
Q 001176 561 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRNRF-LAAGD---EFQIKFWDMDNMNM 619 (1132)
Q Consensus 561 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~~~---dg~i~iwd~~~~~~ 619 (1132)
++...|+++|+ .+++....+.......+..+.+ ++++..+ ++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34456788886 3444133332211111222322 3455444 44332 24678888877654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.7e-05 Score=80.69 Aligned_cols=241 Identities=9% Similarity=-0.003 Sum_probs=146.0
Q ss_pred CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 330 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 330 d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+..+.+.+..+.......+++|+|+|+ ++++-..++.|..||..++. .. .+. ....+.
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCce
Confidence 334566677776557889999999998 77777678999999877532 11 111 123588
Q ss_pred EEEEcCCCCeEEEEeCC-C-eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-
Q 001176 410 RCVWGPDGLMLGVAFSK-H-IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 486 (1132)
Q Consensus 410 ~v~~spdg~~las~~~d-g-~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~- 486 (1132)
.++++++|+++++.... + .|..++..+++.. ....+. .......++..+++. .+++-..++.|.++|..+++.
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976665433 2 4666777776532 222221 122334555555554 556665688999999776532
Q ss_pred EEEec---------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 487 QYTFE---------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 487 ~~~~~---------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+.... +.-...+.+ ++++ +.++++-...+.|..++++.... ...+. .......+++.++|++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEE
Confidence 21111 111234455 4443 24556666788999999875211 11111 112345688999998765
Q ss_pred EEecCCCCCCeEEEEeCCCCceee--eeccccCCceEEEEEe---CCCCEEEEEEcC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDE 606 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 606 (1132)
+.. +.+.|.++|.. ++... .+.... ....+++|. |+++.|++++..
T Consensus 228 a~~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 228 ATH----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECB----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred EeC----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 543 35679999975 65532 233222 257889998 888887776643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.9e-05 Score=82.25 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=138.9
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCC-cEEEEECCC
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 483 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg-~v~vwd~~~ 483 (1132)
.....++|+++|+++++...++.|..||.++. ... . + ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45778999999997777768899999987753 221 1 1 1234688999999998 455443 333 477778778
Q ss_pred CeEEEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCeEEEEEEcCCCCE
Q 001176 484 GRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 552 (1132)
Q Consensus 484 ~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 552 (1132)
++....... .......++..+ ++..+++...++.|..+|......... . . ........+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 775432221 122334454432 224455555688888888765321111 0 0 111234455 788888
Q ss_pred EEEEecCCCCCCeEEEEeCCC-Cce--eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 629 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1132)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999874 332 1111111 134558899999877766677899999975 5543321222222
Q ss_pred CCcceEEEc---CCCCEEEEEeCC
Q 001176 630 PASPRLRFN---KEGSLLAVTTSD 650 (1132)
Q Consensus 630 ~~v~~~~~s---~~~~~l~~~~~d 650 (1132)
....+++|. ++++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888888777654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-05 Score=83.97 Aligned_cols=249 Identities=9% Similarity=0.033 Sum_probs=146.1
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCC---------cCcccccCCCCCCCCCCee
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS---------GTLMTNDINESKPTEESAA 841 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~h~~~~v~ 841 (1132)
...++++.++|..+.+...++.|..|+....... .|.... +........ . ...+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~p~ 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV------------DFAYASPYWNKAFCENSTDAEKRP---L-CGRTY 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE------------EEEESCTTCCHHHHTTCCCGGGHH---H-HCCEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE------------EEecccccccccccccccchhccc---c-CCCCc
Confidence 3567889999887888878888888865321110 000000 000000000 0 13468
Q ss_pred EEEEee-CCCEEEEeeCCeEEEEECCCCeEEEEeeC-----CCCCeEEEEEeCCCCCeEEEEeC----------------
Q 001176 842 CIALSK-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME---------------- 899 (1132)
Q Consensus 842 ~~~~s~-dg~~la~~sdg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~---------------- 899 (1132)
.+++++ +|+++++...+.|..+|..+++. ..+.. .......+++.+.+|++.++-..
T Consensus 84 gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred eEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 899998 56544443456688898776542 22221 11346789998833555554322
Q ss_pred -CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEE-EEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeE
Q 001176 900 -DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 900 -dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
+|.|..||..+++...... .......|+|+|+|++|. +-...+.|..+++..........+.... . ...+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi 234 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNI 234 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEE
T ss_pred CCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCe
Confidence 3678889887665433222 223456799999998554 4466788999998853211111111111 2 5778
Q ss_pred EECCCCcEEEEE-e----------CCeEEEEeCCCCceeecCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 978 QFHNDQTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 978 ~~s~dg~~l~~~-~----------d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
++.++|++.++. . .+.|..+|.+++.+..+....+. ...++++++ .++++.++....+.|.++++..
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999999877764 3 36688888877766665433221 245677776 4666666666788899998864
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-05 Score=80.39 Aligned_cols=181 Identities=8% Similarity=0.026 Sum_probs=128.0
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeE--EEEeeccCCccEEEEEecCCeEEEEEcCCCC
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 529 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~--~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 529 (1132)
....+.|+. +. ++++.+.+|.|+++|+++++.+.++ -..... .+++ .++ .+.+..-.++.+.+||..+.+
T Consensus 56 ftqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~-~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGE-RLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSS-CEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCC-EEEEEEccCCEEEEEECCcCc
Confidence 347888873 33 7788888999999999999998877 223333 3544 333 556666679999999999988
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC----ceEEEEEeCCCCEEEEEE-
Q 001176 530 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG- 604 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~- 604 (1132)
.+..+...... .. +++|++.|+.+. +.+.|+++|..+.+.+.++.....+ .++.+.|. +|. +++..
T Consensus 128 ~~~ti~~~~eG-wG--Lt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw 198 (268)
T 3nok_A 128 RERTTRYSGEG-WG--LCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW 198 (268)
T ss_dssp EEEEEECSSCC-CC--EEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEeCCCce-eE--EecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC
Confidence 88877654332 23 336788887763 4778999999999988887653321 34556776 664 55544
Q ss_pred cCCeEEEEECCCCeeEEEEeCC-----------CCCCCcceEEEcCCCCEEEEEeC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.+..|.+.|..+++.+..+... ......+.||++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6889999999999999888743 11234588999997766665553
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-05 Score=79.60 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=130.7
Q ss_pred CCCeeEEEEeeCCCEEEEee-C--CeEEEEECCCCeEEEEeeCCCCC-eEEEEEeCCCCCeEEEEeCCCcEEEEEcccce
Q 001176 837 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 912 (1132)
......+.|+. +.+..+.+ + ..|+.+|+.+++.+....-.... --.+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34556888986 44444444 3 48999999999999888644332 1345554 34566666678999999999999
Q ss_pred eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCC
Q 001176 913 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 992 (1132)
Q Consensus 913 ~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 992 (1132)
.+.++..-. .-+.++ +|++.|+.+..++.|.++|..+.+......+.. ++
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~------------------~g--------- 146 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA------------------GG--------- 146 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT---------
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc------------------CC---------
Confidence 999887433 234554 567766666678889999998865332211110 00
Q ss_pred eEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc--CCCCCCc
Q 001176 993 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV--SSNTAHP 1070 (1132)
Q Consensus 993 ~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v 1070 (1132)
.. -..++.+.+. +|+..|..-.+..|.+.|..+|+.+..+......+.... .....-.
T Consensus 147 ---------~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 147 ---------RP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp ---------EE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred ---------cc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 00 1234556654 677666555688999999999999988875533222110 1122456
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEE
Q 001176 1071 LVIAPHPSEPNQIALGMSDGAVH 1093 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg~i~ 1093 (1132)
-.++|+|..+++++||-.=-.+.
T Consensus 207 NGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp EEEEEETTTTEEEEEETTCSEEE
T ss_pred EEEEEcCCCCEEEEECCCCCcEE
Confidence 68999996666666665444443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-05 Score=93.48 Aligned_cols=279 Identities=9% Similarity=0.037 Sum_probs=156.1
Q ss_pred eEEEEcc-CCCeEEEEEcCCC-----------cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 347 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 347 ~~~~~sp-dg~~lla~g~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
.++++.| +|+ +++.|+.++ .+.+||..+++...... +...+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence 3667777 776 777776432 58889988876432100 011233334467888
Q ss_pred CCCCeEEEEeC-CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CC-----CcEEEEECCCCeEE
Q 001176 415 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRKQ 487 (1132)
Q Consensus 415 pdg~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d-----g~v~vwd~~~~~~~ 487 (1132)
.+|+++++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 4589999988753221 11221111 123455667888 778887 44 57999999887754
Q ss_pred EEecCCC-CCe----EEEEeeccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCeEEEE
Q 001176 488 YTFEGHE-APV----YSVCPHHKESIQFIFSTAIDG---------KIKAWLYDYLGSRVDYDAP---------GNWCTMM 544 (1132)
Q Consensus 488 ~~~~~h~-~~v----~~i~~~~~~~~~~l~s~s~dg---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~ 544 (1132)
.. .... .+. ....+ ..++..++.++.+| .+..||..+.......... ...-.++
T Consensus 328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 32 1000 000 00001 11224445555443 5677888766533222111 1122344
Q ss_pred EEcC-CCCEEEEEecCCC----CCC---eEEEEeCCCCceeeee--ccccCCceEEEEEeCCCCEEEEEEcC--------
Q 001176 545 AYSA-DGTRLFSCGTSKE----GES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE-------- 606 (1132)
Q Consensus 545 ~~s~-~~~~l~~~~~~~~----~~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 606 (1132)
.+.. +++.++.++.+.. ... .+.+||..+....... .......-.+++..|+++.++.||.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4433 6677777664211 012 5888888876654432 11222123445667899999998754
Q ss_pred ---CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 607 ---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 607 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
..+.+||..+.+....-..........+..+.++|++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999988765432222111112234556789999999885
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.4e-05 Score=75.31 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=127.5
Q ss_pred CCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCC-CeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 451 GGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEA-PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 451 ~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
.-...+.|++ +. ++.+.+.+| .|+.+|+.+|+.+.++.-... .-..+++. ++ .+.+..-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~-~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RD-RLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CC-EEEEEEeeCCEEEEEECCc
Confidence 3467899986 44 566666654 999999999999887753322 12334443 32 5566667799999999999
Q ss_pred CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC----CceEEEEEeCCCCEEEEE
Q 001176 528 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~ 603 (1132)
.+.+..+...... ..+ .++++.|+.+ ++.+.|.++|..+.+.+.++..... ..++.+.+. +|..++..
T Consensus 95 l~~~~ti~~~~~G-wgl--t~dg~~L~vS----dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WAL--TSDDSHLYMS----DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TEEEEEEECSSCC-CEE--EECSSCEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCCc-eEE--eeCCCEEEEE----CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 8888877654432 233 3567777665 2477899999999998888765322 134556665 55444334
Q ss_pred EcCCeEEEEECCCCeeEEEEeCCC-----------CCCCcceEEEcCCCCEEEEEeC
Q 001176 604 GDEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
-.+..|.+.|..+++.+..+...+ .....+.++++|+++.|++.+.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 367899999999999999887431 1124578999998777776654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00095 Score=73.27 Aligned_cols=248 Identities=11% Similarity=-0.004 Sum_probs=151.2
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
+..+|.+..++.. ++++- .+.|+..++....... ++. ....+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~~-ll~~~--~~~I~~i~~~g~~~~~-------------------~~~-~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEPV-LLFAN--RIDIRQVLPHRSEYTL-------------------LLN-NLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCCE-EEEEC--BSCEEEECTTSCCEEE-------------------EEC-SCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCce-eEeec--ccceEEEeCCCCeeEE-------------------eec-CCCceEEEEEeccccEEEEE
Confidence 4566777777543 44432 4567777776543211 011 23357899999866655544
Q ss_pred -eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 424 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 424 -~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
...+.|..++.+++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 457889999988754322 12222234578999986664 4566666789999997654433333334456789999
Q ss_pred eccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 503 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+|.. +.++++-... +.|..++++.................++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 3555555555 78888888754444333334456789999998888777643 46789999987543322232
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45667773 33333444466778888766666555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0012 Score=71.33 Aligned_cols=232 Identities=9% Similarity=-0.000 Sum_probs=144.4
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeE-EEEecCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRK-QYTFEGHE 494 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---~~~-~~~~~~h~ 494 (1132)
+|+.+.. ..|+..|+.+..... .+ ........++|++++.. ++++-...+.|..+++.. +.. ...+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 458888988765433 12 23456789999987664 556666678999999875 122 22233233
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
.....+++.+.. +.+.++-...+.|.+.+++.................+++.|.+..|+.+.. ...+.|...++. |
T Consensus 77 ~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G 152 (316)
T 1ijq_A 77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-G 152 (316)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-S
T ss_pred CCcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-C
Confidence 456788886543 356666677899999998765444444434457789999997776665542 113678888875 3
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
.....+....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222222577899999888887765 5679999999754333333322222245677775 35555555667889
Q ss_pred EEEEcCCc
Q 001176 654 KILANSDG 661 (1132)
Q Consensus 654 ~iw~~~~~ 661 (1132)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 99988776
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00068 Score=75.67 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=152.0
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE-EE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VA 423 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-s~ 423 (1132)
.-.|.+..+.+ .++++ ..+.|+..++..+.... +......+..++|.+.+..|. +-
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 45566666644 34443 24678888877654321 111234578999998655555 44
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
...+.|..++.+++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++++
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 567889999988754222 12222234578899986664 45566667889888876544333333344567889998
Q ss_pred ccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 504 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 504 ~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
|.. +.++++-... +.|..++++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 754 3455555455 78888888765554444444556789999998888777643 467899999874433323332
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
... ....+++. .+..+++-...+.|..++..+++.+..+.
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 222 45667773 33444444467788888876776666554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0011 Score=72.79 Aligned_cols=241 Identities=10% Similarity=-0.015 Sum_probs=151.6
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
..+|.+..+++ +|+.+. ...|+..++.+..... .+ .....+..++|++.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~---~~-~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTL---LL-NNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEE---EE-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCCCeeEE---ee-cCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 34566655633 444443 3457777876643222 12 23345789999987664 455666778999999876654
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
...+.........+++.+.. +.++++-...+.|.+.+++.................+++.|.+..|+.... ...+.|
T Consensus 108 ~~~~~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCEE
T ss_pred eEEEeCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc--CCCCEE
Confidence 44333333456778887543 356677777889999998866555444444567789999997777766542 113779
Q ss_pred EEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001176 567 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1132)
..+++..... ..+....-.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+.+
T Consensus 185 ~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 260 (349)
T 3v64_C 185 EASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 260 (349)
T ss_dssp EEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEE
Confidence 9888764332 333222222578899999887777765 5678999998764433333322 224567777 3455555
Q ss_pred EEeCCCcEEEEEcCCc
Q 001176 646 VTTSDNGIKILANSDG 661 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~ 661 (1132)
+-...+.|..++..++
T Consensus 261 td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 261 TDWHTKSINSANKFTG 276 (349)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred ecCCCCeEEEEEccCC
Confidence 5556778888886666
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.001 Score=74.19 Aligned_cols=239 Identities=9% Similarity=-0.028 Sum_probs=151.7
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
.|.+..+ ..+|+.+. ...|+..++.+..... +.........++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3555555 33444443 3568888887654322 2223346789999987664 55566677899999987665444
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+.........+++.+.. +.++++-...+.|.+.+++.......+.........+++.|.+..|+..-. ...+.|..
T Consensus 153 ~~~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEEE
T ss_pred EEeCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEEE
Confidence 443333455677876543 356667777888999888765544445444567789999998777776542 12377988
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
+++............ -.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.++++-
T Consensus 230 ~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 230 SSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp EETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEE
T ss_pred EeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEee
Confidence 887643332222222 22577899998887777765 5678999998754443333322 234567888 445555666
Q ss_pred eCCCcEEEEEcCCc
Q 001176 648 TSDNGIKILANSDG 661 (1132)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (1132)
...+.|..++..++
T Consensus 306 ~~~~~V~~~~~~~G 319 (386)
T 3v65_B 306 WHTKSINSANKFTG 319 (386)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCeEEEEECCCC
Confidence 66788888886666
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0024 Score=69.48 Aligned_cols=280 Identities=9% Similarity=-0.009 Sum_probs=150.2
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...+.+|.|.+++. .+++| ..|.| ++..+.|+.-..... ........+.+|+|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-
Confidence 35799999988876 56655 45654 333444432111000 0111344688999986 44444
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEecCCCCCeEEEE
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSVC 501 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~~i~ 501 (1132)
++.++.|.. ..+.++..........+.+.+..+.+.+++. .++.+. ++.|.. ....|+.- .....+...+..++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEE
Confidence 455664433 4444554432211112345678888887776 555554 554432 11234332 22334566788888
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+.+. +.+++.+...+..+-+|-....-...-......+..+++.++++.++.+. ++.+++.+...++.-..+.
T Consensus 170 ~~~~--~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 170 RSPS--GEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp ECTT--SCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred EcCC--CcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence 8764 35665554433333333211111111223445788899999988776552 4567666433233322222
Q ss_pred cc---cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 582 GF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 582 ~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.. ....+..+.+.+++..+++ +.++.| ++..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 11 1124788889887665555 457766 4555666655554421 112357889887555 466677888776654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0002 Score=73.42 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=132.2
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
...+..++++|++..|++.. ++.|...|.. ++.++.+.- -....-.|++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 45799999999877666654 6789999998 888877742 225678899988 777777666778899998865432
Q ss_pred ---eeeec------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccc-cceeeeC--CCCCCCCCCCceeEEECC
Q 001176 914 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQA--PAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 914 ---~~~l~------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~-~~~~~~~--~~~~~~~~~~v~~~~~s~ 981 (1132)
+.... .......+|+|+|+++.|.++.......+|.++..... ....... ..+ .........+++.|
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~-~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR-QFTLDDVSGAEFNQ 182 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH-TCCSSCCCEEEEET
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc-ccccCCceeEEEcC
Confidence 22221 23445789999999987777776655666666421000 0011110 000 00114578999999
Q ss_pred CCcEEEE-E-eCCeEEEEeCCCCceeecCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 982 DQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 982 dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
....+.+ + ..+.+..+|.+++.+..+....+. -..--.|+|.++|+ |+..++.+.++++.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 8766666 5 357788999987765554333221 13567899999998 5555888877777544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00076 Score=69.14 Aligned_cols=201 Identities=10% Similarity=0.098 Sum_probs=130.7
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999887778878888999999987 66544211 122 246778899999987777
Q ss_pred EeCCCeEEEEEecCCCcee--eeeeee----cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC---CCeEEEEec--
Q 001176 423 AFSKHIVHLYTYNPTGELR--QHLEID----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFE-- 491 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~--~~~~l~----~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~---~~~~~~~~~-- 491 (1132)
.-.++.+.++++.....+. ....+. ........++|+|+++. |+++.......+|.+. ....+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999987765422 111111 23446789999999985 4444443344444432 111122221
Q ss_pred -----CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CeEEEEEEcCCCCEEEEEe
Q 001176 492 -----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 492 -----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~ 557 (1132)
.+...+.+++++|.. +.+++.....+.+..+|.... .+..+.... .....++|.++|+..+++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-
Confidence 133467899999874 478888888889999987643 444333332 266899999999866664
Q ss_pred cCCCCCCeEEEEeC
Q 001176 558 TSKEGESHLVEWNE 571 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~ 571 (1132)
. .+.++.+..
T Consensus 242 E----~n~~y~f~~ 251 (255)
T 3qqz_A 242 E----PNRFYRFTP 251 (255)
T ss_dssp T----TTEEEEEEC
T ss_pred C----CceEEEEEe
Confidence 2 445666653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0033 Score=70.34 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=148.3
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eEEEEecCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 494 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~ 494 (1132)
+|+.+ ....|+..++.+..... +......+..++|++.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888888754332 2234557889999987664 4555566788999997652 2233333344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+..-. ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567888887643 366677777889999998866555555545556889999997777766532 12367888888643
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
.........-. ....+++++++..|+.+. ..+.|..+|+........+...........+++. .+.++++-...+.|
T Consensus 236 ~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33322222222 678899999888888775 5678999998765544444432222344567763 34455555667889
Q ss_pred EEEEcCCc
Q 001176 654 KILANSDG 661 (1132)
Q Consensus 654 ~iw~~~~~ 661 (1132)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887777
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0074 Score=65.10 Aligned_cols=231 Identities=9% Similarity=-0.037 Sum_probs=138.5
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE-eCCCeEEEEEecCC---Cce
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPT---GEL 440 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~dg~i~iwd~~~~---~~~ 440 (1132)
.+.|+..|+.+++.... + .....+..++|++++..|..+ ..++.|..+++++. ...
T Consensus 9 ~~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 36788888887653221 1 123467899999876655544 45689999998862 222
Q ss_pred eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC-Ce
Q 001176 441 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GK 519 (1132)
Q Consensus 441 ~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~ 519 (1132)
.. .+...-.....+++.+.+.. +.++-...+.|.+.|+........+.........++++|.. +.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCe
Confidence 11 12222235678999876654 45566678899999976543333333334567889988754 2444444333 68
Q ss_pred EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee-ccc-cCCceEEEEEeCCC
Q 001176 520 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-SGF-RKRSLGVVQFDTTR 597 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~-~~~~v~~~~~~~~~ 597 (1132)
|...+++.................+++++++..|+.+-. ..+.|..+|+.... .+.+ ... .......+++. .+
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TT
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CC
Confidence 888887654433333334457889999998888877643 36689999987433 2222 211 11135567775 34
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 598 NRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
..+++-...+.|..++..+++.+..+.
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444444467788888877766555443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.007 Score=65.69 Aligned_cols=194 Identities=12% Similarity=0.064 Sum_probs=112.3
Q ss_pred CCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEE-eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE-EEc--cccee
Q 001176 838 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDEV 913 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~~ 913 (1132)
..+..+++.+++..++++.+|.|.. ..+.++.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788888888777776665422 1222322222 234456789999999 788887664 455444 332 22233
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCe
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 993 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 993 (1132)
+. ......+..++++++++.++ ++.+|.+++++.+.++.-. .+... .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 23456788999999987665 4557878777533232111 11111 000013478889999998888888887
Q ss_pred EEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 994 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 994 v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
+. +.. .+..-........+...+.++.|.+++. +++++.+|.|.-++-
T Consensus 272 i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 73 333 3333222221111245678899986665 555667898777664
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00025 Score=85.75 Aligned_cols=137 Identities=7% Similarity=-0.046 Sum_probs=79.0
Q ss_pred CCCEEEEeeCCeEEEEECCCCeEEEEeeCCC---------CCeEEEEEeCCCCCeEEEEeCCC-----------cEEEEE
Q 001176 848 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPP---------PAATFLAFHPQDNNIIAIGMEDS-----------SVQIYN 907 (1132)
Q Consensus 848 dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~---------~~i~~l~~sp~~~~~lasg~~dg-----------~v~iwd 907 (1132)
+|+.+..+....+..||..+..-......+. ..-.++.|...++++++.|+.++ .|.+||
T Consensus 359 ~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd 438 (656)
T 1k3i_A 359 KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGE 438 (656)
T ss_dssp GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCS
T ss_pred CCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCC
Confidence 3333333334568899988765433322111 12345556544788999988543 678888
Q ss_pred cccceeeeee--ccccCCe-eEEEEcCCCCEEEEEcCC-----------CcEEEEECCCcccccceeeeCCCCCCCCCCC
Q 001176 908 VRVDEVKTKL--KGHQNRI-TGLAFSPTLNALVSSGAD-----------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 973 (1132)
Q Consensus 908 ~~~~~~~~~l--~~h~~~V-~~l~~spdg~~l~s~~~D-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1132)
..+.+-.... ..+..+. .+++..|+++.++.||.+ ..+.+||..+.+-.. +.... .+...
T Consensus 439 ~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~---~~~~~---~~R~~ 512 (656)
T 1k3i_A 439 PGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNS---IVRVY 512 (656)
T ss_dssp TTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCS---SCCCT
T ss_pred CCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee---cCCCC---Ccccc
Confidence 8766533322 2233333 344667899999999854 468999997754211 11111 11122
Q ss_pred ceeEEECCCCcEEEEEe
Q 001176 974 ETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 974 v~~~~~s~dg~~l~~~~ 990 (1132)
.....+.+||+.+++++
T Consensus 513 hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 513 HSISLLLPDGRVFNGGG 529 (656)
T ss_dssp TEEEEECTTSCEEEEEC
T ss_pred ccHhhcCCCcEEEecCC
Confidence 34566789999988864
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00076 Score=76.31 Aligned_cols=250 Identities=8% Similarity=0.025 Sum_probs=148.0
Q ss_pred CeeEEEEeeC--CCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC---C-cEEEEEcccc
Q 001176 839 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 911 (1132)
Q Consensus 839 ~v~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 911 (1132)
....++++|+ +..|..+. .+.|+.+|..+++.... .........++|++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 45566665 58899999987776544 33556689999999 77755443321 1 2333333222
Q ss_pred ee-eeeeccccCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 912 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 912 ~~-~~~l~~h~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
.. ...+. .......++++| +|.+.++-..++.|+.++..++..... ....... .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01121 234456789999 777777777788899999886653111 1111111 123469999999977775
Q ss_pred --eCCeEEEEeCC--CCce---eecCC---CCC---------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEE
Q 001176 990 --HESQISVYDSK--LECS---RSWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 990 --~d~~v~vwd~~--~~~~---~~~~~---~~~---------h~~~i~~i~~---------s~dg~~las~~~dg~i~vw 1041 (1132)
..+.|..++.. ...+ ..+.. ..+ ....-..+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789887763 2211 11110 000 1223567899 6777777776677889999
Q ss_pred eCCCcceecccCCCc-----cccc-cccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1042 DAETLRFRCRIGPSA-----YIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1042 d~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
+. +|.......... +... ......-..+..++++|.++.++++-...++|+..+++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 464432222110 0000 00012234688999995577788877778899988764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00046 Score=78.21 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=144.9
Q ss_pred CeeEEEEee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeC-CC----cEEEEEcccc
Q 001176 839 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 911 (1132)
Q Consensus 839 ~v~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 911 (1132)
....++++| ++..|.++. .+.|+.+|..+++... +.........|+|++ ++++|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 457889998 466666666 5789999998766543 333556688999999 7875555544 22 344444 333
Q ss_pred eee--eeeccccCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 912 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 912 ~~~--~~l~~h~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
... ..+. ......+++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 322 2222 223467789999 77777777788899999998754311 1111111 23578999999997766
Q ss_pred E--eCCeEEEEeCCCC--ce---eecCC---CCCC---------CCCeE-EEEEc--------cCCCEEEEEecCCcEEE
Q 001176 989 V--HESQISVYDSKLE--CS---RSWSP---KDAL---------PAPIS-SAIYS--------CDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 989 ~--~d~~v~vwd~~~~--~~---~~~~~---~~~h---------~~~i~-~i~~s--------~dg~~las~~~dg~i~v 1040 (1132)
+ ..+.|..++.++. .+ ..+.. ..+. -..-. .++.. ++|.+.++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 5 4678998877331 11 11110 0000 01122 44443 34555555556678888
Q ss_pred EeCCCcceecccCCC-----ccccc-cccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1041 FDAETLRFRCRIGPS-----AYIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
++ .+|......... .+... ....+.-..+..++++|+++.++++-...++|+..+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 445443222110 00000 00011224688999998556677777777888887764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00033 Score=86.01 Aligned_cols=200 Identities=6% Similarity=-0.049 Sum_probs=113.1
Q ss_pred CCCc-CeEEEEEc-CCCCeEEEEeC-C----CeEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-
Q 001176 403 DAAI-SVNRCVWG-PDGLMLGVAFS-K----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD- 473 (1132)
Q Consensus 403 ~h~~-~V~~v~~s-pdg~~las~~~-d----g~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d- 473 (1132)
+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4543 68889999 99999986543 2 35999999998 63321 1211 2357899999985 4433333
Q ss_pred ----CcEEEEECCCCeE--EEEecC-CCCCeEEEEeeccCCccEEEEEec---CCeEEEEEcCCCC-ce--EEe-cCCCC
Q 001176 474 ----KMIKVWDVVAGRK--QYTFEG-HEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDY-DAPGN 539 (1132)
Q Consensus 474 ----g~v~vwd~~~~~~--~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~-~~--~~~-~~~~~ 539 (1132)
..|+++++.++.. ...+.. .......+.|+|+ |.+|+..+. ...|.++|+.++. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889887642 223322 2344567778765 466665552 3468888887753 22 323 22334
Q ss_pred eEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCC-ceee-eeccccCCceEEEEEeCCCCEEE-EEEcCCe--EEEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQ--IKFWD 613 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd 613 (1132)
...++.|+. |+.|+..+... .+...|..+|+.++ .... .+.......+..+.+. ++.|+ +...++. |++++
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEE
T ss_pred ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEe
Confidence 445555433 66665554321 24567888888753 2222 2222222134444444 55554 4556775 45556
Q ss_pred C
Q 001176 614 M 614 (1132)
Q Consensus 614 ~ 614 (1132)
+
T Consensus 398 l 398 (751)
T 2xe4_A 398 A 398 (751)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0013 Score=73.79 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=134.8
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCC----eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
...+..++|++.+..|...+ .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999888777776 688999998752 222333334456789999984555666666678999999876
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEc-C-CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-A-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
......+........+|++.|.+..|..+. . .+.|...+++...... .+.. + ......+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C----CCceEEEEEEeCCCEEEE
Confidence 544444443445578999999766555444 2 3678888887643211 1111 1 134689999998888887
Q ss_pred Ee--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 989 VH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 989 ~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
++ .+.|..+|+++.....+...........++++ ..+.++.+-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 54 57899999966555444332222334556776 334455566667889999988887765554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.96 E-value=0.014 Score=62.85 Aligned_cols=208 Identities=9% Similarity=0.007 Sum_probs=129.6
Q ss_pred CeEEEEEcCCCCeE-EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 407 SVNRCVWGPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 407 ~V~~v~~spdg~~l-as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
.+..++|.+.+..| .+-...+.|..++.+++..... .+...-.....+++.+.+.. ++++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCc
Confidence 56789999865544 4545678899999887632211 12222245678999976654 55566667899999976543
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
....+.........+++.|.. ..|+.+. ..+.|...+++...........-.....+++++++..|+.+-. ..
T Consensus 113 ~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~ 187 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KL 187 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TT
T ss_pred EEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CC
Confidence 332333445567899998754 3444443 3578888887754444333334456789999998888877643 46
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
+.|..+|+..........+... ....+++.. +..+++-...+.|..++..+++....+.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 7899999874333222222222 455677653 3344444467788888887776655554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0011 Score=74.92 Aligned_cols=240 Identities=8% Similarity=0.114 Sum_probs=137.3
Q ss_pred CeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CC----cEEEEE
Q 001176 407 SVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK----MIKVWD 480 (1132)
Q Consensus 407 ~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg----~v~vwd 480 (1132)
....++++| ++..|.++...+.|+.+|.+++.... +.........++|+++++. |+.+.. .+ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 567899998 45556666555889999988754222 2234456889999999984 444433 22 233344
Q ss_pred CCCCeEE--EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEe
Q 001176 481 VVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 481 ~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
..+... ..+.. ......++++|. ++.++++-..++.|..++........... ........++|+|+|++|+.+.
T Consensus 212 -~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 -RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 333221 22221 233566777663 34667777778899999987654422222 2234567899999999776664
Q ss_pred cCCCCCCeEEEEeCCC--Cce--eeeeccc------cC--------CceE-EEEEe--------CCCCEEEEEEcCCeEE
Q 001176 558 TSKEGESHLVEWNESE--GAI--KRTYSGF------RK--------RSLG-VVQFD--------TTRNRFLAAGDEFQIK 610 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~~~dg~i~ 610 (1132)
. ..+.|..++... +.. +..+.+. .. .... .++.. +++..+++=...+.|+
T Consensus 289 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 289 V---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp T---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred C---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 3 367788887653 221 1222211 00 0122 45553 3344444444677899
Q ss_pred EEECCCCeeEEEEeC---------CC------CCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 001176 611 FWDMDNMNMLTTVDA---------DG------GLPASPRLRFNKE-GSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 611 iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~ 659 (1132)
.++. ++........ .+ .......++++++ +.++++-...+.|+.++++
T Consensus 366 ~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9884 4544433321 00 0123568899984 5555555556778777653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00013 Score=88.18 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=127.8
Q ss_pred CCeeEEEEeeCCCEEEEee--CCeEEEEECCC----CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 838 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3467899999888888776 57899999875 22222222222345678888635666666566788999998755
Q ss_pred eeeeeeccccCCeeEEEEcCCCCEEEEEc-CC-CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 912 EVKTKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
.....+.........|++.|++.+|..+. .. +.|...++...... ..+.. . ......++|+|++.+|.++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~~--~----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTE--N----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESCS--S----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEeC--C----CCCccEEEEeccCCEEEEE
Confidence 43333333334567899998765554443 22 67877777653211 11111 0 1345789999987777765
Q ss_pred --eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC
Q 001176 990 --HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 990 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
..+.|.++++.+.....+............|++..+ .++++....+.|..++..+|+.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 457899999966544444322111223344555443 4455555678999999999988777653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0027 Score=71.75 Aligned_cols=241 Identities=9% Similarity=0.093 Sum_probs=137.9
Q ss_pred cCeEEEEEcCC--CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC---Cc-EEEE
Q 001176 406 ISVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD---KM-IKVW 479 (1132)
Q Consensus 406 ~~V~~v~~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d---g~-v~vw 479 (1132)
.....++|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 4445555444889999987764332 333445688999999998 55555421 12 3333
Q ss_pred ECCCCeE-EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-Eec-CCCCeEEEEEEcCCCCEEEEE
Q 001176 480 DVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYD-APGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 480 d~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~-~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+...+.. ...+. .-.....+++++. ++.+.++-..++.|+.+|..++.... ... ........++++|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 3222111 01111 1233455677653 33566666677889999887655412 211 222234579999999977766
Q ss_pred ecCCCCCCeEEEEeCC--CCce--eeeeccc------c--------CCceEEEEE---------eCCCCEEEEEEcCCeE
Q 001176 557 GTSKEGESHLVEWNES--EGAI--KRTYSGF------R--------KRSLGVVQF---------DTTRNRFLAAGDEFQI 609 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~--------~~~v~~~~~---------~~~~~~l~~~~~dg~i 609 (1132)
-. ..+.|+.++.. ++.. ...+.+. . -.....+++ .+++..+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 46789998765 3322 1122211 0 013556888 6666665555577889
Q ss_pred EEEECCCCeeEEEEeCCCC----------------CCCcceEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 001176 610 KFWDMDNMNMLTTVDADGG----------------LPASPRLRFN-KEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+.++. ++... ++.+... ......++++ ++|.++++-...+.|+.++++
T Consensus 368 ~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 45433 3322111 1234578888 566655555556777777653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.003 Score=71.35 Aligned_cols=254 Identities=6% Similarity=-0.019 Sum_probs=148.6
Q ss_pred CeeEEEEee-CCCEEEEee--CCeEEEEECCCCeEEEEeeCC---CCCeEEEEE-------eCCCCCeEEEEeCCC----
Q 001176 839 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 901 (1132)
Q Consensus 839 ~v~~~~~s~-dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~~~~~lasg~~dg---- 901 (1132)
....|+|+| +...|.++. .+.|++.|+.++......... ......|+| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455565555 367999999887765544332 235889999 99 777565555543
Q ss_pred ---cEEEEEccc-ceee-----eeeccccCCeeEEEEcCC-CCEEEEEcCCCcEEEEECC-------Cccc------c--
Q 001176 902 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 956 (1132)
Q Consensus 902 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~spd-g~~l~s~~~D~~i~iwd~~-------~~~~------~-- 956 (1132)
.|.+++... +... ..+.. .....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12221 123467889994 5666677788889999997 4442 0
Q ss_pred --cceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCC--Cce---eecC---CCCCC---------CC
Q 001176 957 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKL--ECS---RSWS---PKDAL---------PA 1015 (1132)
Q Consensus 957 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~---~~~~---~~~~h---------~~ 1015 (1132)
.........+ .....++|+|+|++|.++ ..+.|+.++..+ ..+ ..+. ...++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011222111 235789999999976665 467888866522 211 1111 01111 11
Q ss_pred CeE-EEEEc-------cCCCEEEEEecCCcEEEEeCCCcceecccCCCc------------cccc-cccCCCCCCcEEEE
Q 001176 1016 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA------------YIPT-YAVSSNTAHPLVIA 1074 (1132)
Q Consensus 1016 ~i~-~i~~s-------~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~v~~~~ 1074 (1132)
.-. .++.. ++|.++++=...++|+.++ .+|.. ..+.... +... ....+.-..+..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 233 34444 4566666666778899998 45643 3332110 0000 01122335688999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1075 PHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1075 ~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++++++.+.++-....+|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998447777777778899999987654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.86 E-value=0.014 Score=62.67 Aligned_cols=226 Identities=10% Similarity=-0.001 Sum_probs=141.6
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecCCCCCeEEEEeec
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~i~~~~ 504 (1132)
...|+..++++...... ..+. .......++|.+.+.. ++++-...+.|..+++..+.. ...+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~-~~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT-IVVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE-EEEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE-EEec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 45789999887641111 1122 2235678999986654 556666778999999876532 122222234466788765
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
.. +.++++-...+.|.+++++.................+++.|.+..|+.+.. ...+.|...++.... ...+....
T Consensus 89 ~~-g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~--~~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 89 LG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp TT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC--SSSCEEEEEETTSCS-CEEEECSS
T ss_pred CC-CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec--CCCCEEEEEEcCCCC-eEEEEECC
Confidence 43 356677777889999998765544444445567789999997766666532 125678888876332 22222111
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 585 KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
-...+.+++++++..|+.+. ..+.|..+|+............ ......+++.. +.++.+-...+.|..++..++
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 22567899999887777765 5688999998754433333211 23456777753 345555556788999988777
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.015 Score=70.43 Aligned_cols=231 Identities=9% Similarity=-0.005 Sum_probs=145.1
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eEEEEecCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 494 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~ 494 (1132)
+|+.+ ....|+..++....... +......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 33457777877654332 2234456789999986664 5556666788999998653 2233343344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
.....|++.+.+ +.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-. .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 567788887653 256677777899999999866554455445557889999998777766532 11367888888744
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCc
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNG 652 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~ 652 (1132)
.....+.... .....|++++.+..|+.+. ..+.|...++........+..........+|++. +..|+.+ ...+.
T Consensus 548 ~~~~lv~~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 624 (791)
T ss_dssp CEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceEEEEeCCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence 4333333222 2678899998888887775 5678999999765555544433222234466653 3344444 45677
Q ss_pred EEEEEcCCc
Q 001176 653 IKILANSDG 661 (1132)
Q Consensus 653 i~iw~~~~~ 661 (1132)
|...+..++
T Consensus 625 I~~~dk~tG 633 (791)
T 3m0c_C 625 IFSANRLTG 633 (791)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 888887776
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.019 Score=69.73 Aligned_cols=212 Identities=8% Similarity=-0.056 Sum_probs=129.1
Q ss_pred CcCeEEEEEcCCCCeE-EEEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 405 AISVNRCVWGPDGLML-GVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
...+..++|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.+.. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4467899999865554 45455678999998763210 011122223456778999988865 55666778899999976
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
.......+...-....+|++.|.. +.++++-... +.|...+++.......+.........|++.+.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 544333333344568899998754 2444443333 78888888765555555545567899999988888877642
Q ss_pred CCCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEE
Q 001176 562 GESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 623 (1132)
+...|...++........+.... -.....+++. +.+|+.+. ..+.|...|..+++.+..+
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 35679999986544333333211 1123445553 34555544 5577777777666555544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0073 Score=64.12 Aligned_cols=194 Identities=12% Similarity=0.141 Sum_probs=122.7
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC--Ccc---EEEEEec---CCeEEEEEcCC-CCceEEecC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTAI---DGKIKAWLYDY-LGSRVDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~--~~~---~l~s~s~---dg~i~~wd~~~-~~~~~~~~~ 536 (1132)
+++.....+-+.++|+ +|+.++.+.. +.++.+..-|.- .|. ++++... +++|++|+++. ...+..+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666789999998 9999988864 567777665521 111 2333333 57899997742 223333311
Q ss_pred ------CC-CeEEEEEE--cCC-CC-EEEEEecCCCCCCeEEEEeCC-------CCceeeeeccccCCceEEEEEeCCCC
Q 001176 537 ------PG-NWCTMMAY--SAD-GT-RLFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 537 ------~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1132)
.. ..+..+|+ +|. ++ ++++.. +++.+..|++. +.+.+++|.... .+..|...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 45667777 774 44 344443 36789888882 346677777644 578889999999
Q ss_pred EEEEEEcCCeEEEEECC-----CCeeEEEEeCCCCCCCcceEEE--cCCCC-EEEEEe-CCCcEEEEEcCCcceeeeec
Q 001176 599 RFLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 599 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1132)
+|+.+-++.-|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .+.++.+||.....+.+..+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999998777777754 3455555532222225677877 45555 555555 57799999986332444444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.013 Score=66.22 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=139.1
Q ss_pred CeEEEEEcC-CCCeEEEE-eCCCeEEEEEecCCCceeeeeeee-cccCCEEEEEE-------ecCCCcEEEEEEcCCC--
Q 001176 407 SVNRCVWGP-DGLMLGVA-FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAF-------AHPNKQLCIVTCGDDK-- 474 (1132)
Q Consensus 407 ~V~~v~~sp-dg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~-------s~d~~~~~l~s~~~dg-- 474 (1132)
....|+|+| +...|..+ ...+.|++.|.+++.... ..... ........++| ++++.. |+.....+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 567899999 45545444 444678888888754332 11111 11235889999 999984 44443332
Q ss_pred -----cEEEEECCC-CeEE-----EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001176 475 -----MIKVWDVVA-GRKQ-----YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-------YLGS------ 530 (1132)
Q Consensus 475 -----~v~vwd~~~-~~~~-----~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~-------~~~~------ 530 (1132)
.|.+.+... |... ..+... .....++++|. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666333 2221 122111 13346677664 34677777788899999987 4432
Q ss_pred -----e-EEe-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC--CCce--eeeeccc------cC--------
Q 001176 531 -----R-VDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF------RK-------- 585 (1132)
Q Consensus 531 -----~-~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~~-------- 585 (1132)
. ..+ .......+.++|+|+|++|+.+-. ...+|+.++.. ++.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 112 223345689999999997666532 46778886653 3322 1222221 10
Q ss_pred CceE-EEEEe-------CCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC----------------------CCCCcceE
Q 001176 586 RSLG-VVQFD-------TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG----------------------GLPASPRL 635 (1132)
Q Consensus 586 ~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~~ 635 (1132)
.... .++.. +++..+++=..+..|+.++. ++. +.++.+.+ .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0233 34554 44555555557889999984 553 44443221 01234578
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEEcCCc
Q 001176 636 RFNKE-GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 636 ~~s~~-~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++++ |.++++=.....||.+++...
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 665555556778888887654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0096 Score=62.65 Aligned_cols=203 Identities=11% Similarity=0.072 Sum_probs=125.1
Q ss_pred CeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEE-eeC----CC--CCeEEEEE---eCCCCCeEEEEeC-------
Q 001176 839 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMS----PP--PAATFLAF---HPQDNNIIAIGME------- 899 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~~~~~lasg~~------- 899 (1132)
.-.+++|.+....+..++ .++|..||...+..... +.+ .. ..+..|.| .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788988667776666 89999999986644333 222 11 13578999 68 6888876442
Q ss_pred ------CCcEEEEEcc---cceeeeeec--ccc-----------CCeeEEEEcCCCCEEEEEcCC-CcEEEEECCCcccc
Q 001176 900 ------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWEKL 956 (1132)
Q Consensus 900 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~l~s~~~D-~~i~iwd~~~~~~~ 956 (1132)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+... .
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 6789999999 777665432 111 247899999999999998887 877777666532 2
Q ss_pred cceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCceeecC----CCCCCCCCeEEE-EEccCCCE-E
Q 001176 957 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS----PKDALPAPISSA-IYSCDGLL-V 1029 (1132)
Q Consensus 957 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~----~~~~h~~~i~~i-~~s~dg~~-l 1029 (1132)
....+....... ....+.++++|+|+.|++. ..+.+..+|+.......+. ...+.......| .--.+|+. |
T Consensus 172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 211222211111 1456799999999988884 4888999998421110011 100112233443 33357887 4
Q ss_pred EEEecCCcEEEEeCCC
Q 001176 1030 YAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1030 as~~~dg~i~vwd~~~ 1045 (1132)
++....+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566666655543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00065 Score=82.07 Aligned_cols=232 Identities=8% Similarity=0.006 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC----CeEEEEecCCCCCeEEEE
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA----GRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~h~~~v~~i~ 501 (1132)
.+.|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++.. ......+.........|+
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3567778877654332 1122345678999987763 344445567899999875 222222211222345677
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+.+.. +.++++-...+.|.++++........+.........+++.|.+.+|+.... ...+.|..+++.... ...+.
T Consensus 460 vD~~~-g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCSS-SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCC-CCEES
T ss_pred EEeeC-CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCC-eeEEE
Confidence 75433 356666667788999998765444333333345678899997666665432 113678887765322 22222
Q ss_pred cccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
...-...+.++|+|++..|+.+. ..+.|..+++........+...........+++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11112456799999877666654 667899999975444433332222223456666544 4455555678999999887
Q ss_pred cceeeeec
Q 001176 661 GVRLLRML 668 (1132)
Q Consensus 661 ~~~~~~~~ 668 (1132)
+ +..+.+
T Consensus 615 G-~~~~~i 621 (699)
T 1n7d_A 615 G-SDVNLL 621 (699)
T ss_dssp E-EEEECC
T ss_pred C-CceEEe
Confidence 7 444444
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=67.77 Aligned_cols=96 Identities=14% Similarity=0.288 Sum_probs=78.5
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+|+.|.||||+.+|+.++|..||++.-..+...+.+++++|+.+..+.++.+++....++. ++.+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s 126 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 126 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence 4455 9999999999999999999999999998877777778899999999999999988888877766 3666
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~ 179 (1132)
-..|+..|++.= ..-|..+|++.+
T Consensus 127 ~~lL~~fL~~~~----------------~~~ll~Iin~~i 150 (156)
T 2nxp_A 127 YQLLKRHLQEKQ----------------NNQIWNIVQEHL 150 (156)
T ss_dssp HHHHHHHHTTST----------------TCHHHHHHHHTC
T ss_pred HHHHHHHHHHcC----------------ChHHHHHHHHhe
Confidence 678888887731 226777887754
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.55 E-value=0.42 Score=60.68 Aligned_cols=598 Identities=11% Similarity=0.102 Sum_probs=283.8
Q ss_pred cccceEEeecCCCCeeEE---EE-ccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 332 LTKTVVRTLNQGSNVMSM---DF-HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~---~~-spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
++.....+++....|+.. .| +|+.+.++++. ...+.||.+...+......+. --+.
T Consensus 19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~~Lvvak--~~~Lel~~~~~~~L~~v~~~~------------------l~G~ 78 (1158)
T 3ei3_A 19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAK--NTRLEIYVVTAEGLRPVKEVG------------------MYGK 78 (1158)
T ss_dssp CCCEEEEEEECCCSCCEEEEECSSCSSCCEEEEEE--TTEEEEEEEETTEEEEEEEEE------------------CSSC
T ss_pred ccEEEEEEeeCCChhhEEEEEEcCCCCccEEEEec--CCEEEEEEEcccceEEEEEEE------------------cccE
Confidence 444445566655566544 33 34555544433 368999998765432211111 2345
Q ss_pred eEEEEE-cCC---CCeEEEEeCCCeEEEEEecCCCc-eeee-eee---ecccC----CEEEEEEecCCCcEEEEEEcCCC
Q 001176 408 VNRCVW-GPD---GLMLGVAFSKHIVHLYTYNPTGE-LRQH-LEI---DAHVG----GVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 408 V~~v~~-spd---g~~las~~~dg~i~iwd~~~~~~-~~~~-~~l---~~h~~----~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
|.+++- -+. .++|+.++.++.+.+..++.... .... ... ....+ +-..++..|.|+ .++....++
T Consensus 79 I~~l~~~r~~g~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR--~~~l~~~e~ 156 (1158)
T 3ei3_A 79 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECR--MIGLRLYDG 156 (1158)
T ss_dssp EEEEEEECCTTCSSCEEEEEETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSS--EEEEECBTT
T ss_pred EEEEEEEcCCCCCceEEEEEeCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCC--EEEEEeccC
Confidence 666653 333 36999999999887755543211 1110 011 10011 123678899998 777787889
Q ss_pred cEEEEECCCC-e--EEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEe-cCC----CCeEEE
Q 001176 475 MIKVWDVVAG-R--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDY-DAP----GNWCTM 543 (1132)
Q Consensus 475 ~v~vwd~~~~-~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~-~~~----~~~v~~ 543 (1132)
.+.++-+... . ....+.-....|.+++|-...+...++.-..|. .+..|.++-+...... ... ......
T Consensus 157 ~~~v~pl~~~~~~l~~~~~~l~~~~v~d~~fL~g~~~P~~A~Ly~d~~~~~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~ 236 (1158)
T 3ei3_A 157 LFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASM 236 (1158)
T ss_dssp EEEEEECCTTCTTCCCEEEECSCCCEEEEEECSSCSSCEEEEEEEETTEEEEEEEEEETTTTEEEECSSCCEEECTTCCE
T ss_pred EEEEEEecCCcccccccccccccceEEEEEEecCCCCcEEEEEEECCCCCEEEEEEEEcCCCeeeecccccccCCCCCCE
Confidence 9988877531 1 112222234567888875443345565554433 3555655443321111 000 001111
Q ss_pred EEEcC--CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCC-e-
Q 001176 544 MAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNM-N- 618 (1132)
Q Consensus 544 ~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-~- 618 (1132)
+.--| -|-.|+.| ...|...|... .............+.+.+. ..++.+++.+.++|.++...+... .
T Consensus 237 LipVP~~~gGvlv~g------~n~i~y~~~~~-~~~~~~p~~~~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~ 309 (1158)
T 3ei3_A 237 VIAVPEPFGGAIIIG------QESITYHNGDK-YLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQM 309 (1158)
T ss_dssp EEECCTTTCCEEEEC------SSCEEEEETTE-EEEECCGGGGGSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC--
T ss_pred EEECCCCCceEEEEE------CCEEEEEcCCC-ceEEeccccCCceEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCc
Confidence 22222 24455544 23355555332 1111111111113433332 335567888889999887655321 1
Q ss_pred ----eEEEEeCC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcce----eeeeccccccccccCCCCCCCCCcc
Q 001176 619 ----MLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR----LLRMLEGRAMDKNRCPSEPISSKPL 688 (1132)
Q Consensus 619 ----~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1132)
.+..+... +......++++-.+| +|+.|+..|.=.+|.+..... .+..+.
T Consensus 310 ~~~~~V~~l~i~~~~~~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------------- 369 (1158)
T 3ei3_A 310 DGTVTLKDLRVELLGETSIAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------------- 369 (1158)
T ss_dssp ---CEEEEEEEEEEEECSCCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-------------------
T ss_pred cCceeEEEEEEEEcCCccCccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEe-------------------
Confidence 22222211 112233677776655 788899988877777754311 000000
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccc---cCceeeeecCCCCCCCcceEEecCC
Q 001176 689 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPD 765 (1132)
Q Consensus 689 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~w~~~~~~~~~~~~~~~~~~ 765 (1132)
.+...|+...+ . ..+.......+.+++++ +|.+++..-.- .........+++
T Consensus 370 ~~~N~~PI~D~--------------------~---v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi--~~~~~~~~~l~g 424 (1158)
T 3ei3_A 370 TFTNLGPIVDM--------------------C---VVDLERQGQGQLVTCSGAFKEGSLRIIRNGI--GIHEHASIDLPG 424 (1158)
T ss_dssp EECCCCSEEEE--------------------E---EECTTSSSCCEEEEEECCGGGCEEEEEEESB--CEEEEEEECCCS
T ss_pred eecCcCCceeE--------------------E---EEccCCCCCCeEEEEECcCCCCeEEEEecCC--CEEEEEeecCCC
Confidence 00000000000 0 00000000112222222 26666665331 111112222222
Q ss_pred cccccceEEEEEe---cCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 766 SIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 766 ~~~~~~i~~~~~s---~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
...+..+... ....+|+.+..+.+ .|+.+.... +-.....+.......+.+
T Consensus 425 ---v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~----------------------veev~~~gf~~~~~TL~~ 478 (1158)
T 3ei3_A 425 ---IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEE----------------------VEETELMGFVDDQQTFFC 478 (1158)
T ss_dssp ---CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTE----------------------EEEECCTTCCSSSCEEEE
T ss_pred ---ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCc----------------------ccccccccccCCCCcEEE
Confidence 1233333322 12345555555544 344332100 000001110000122222
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceee--eeecc
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKG 919 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--~~l~~ 919 (1132)
-.+ .+..++-.....|++.+......+..+.... ..|.+.+... ..++.++ ++.+.++++..+++. ....
T Consensus 479 ~~l--~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~~~~- 551 (1158)
T 3ei3_A 479 GNV--AHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQISHTE- 551 (1158)
T ss_dssp EEE--TTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEEEEE-
T ss_pred EEc--CCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeecccC-
Confidence 222 2346666667788999987766777776544 3577777653 3566665 678888888765422 2222
Q ss_pred ccCCeeEEEEcCC------CCEEEEEcC-CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eC
Q 001176 920 HQNRITGLAFSPT------LNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 991 (1132)
Q Consensus 920 h~~~V~~l~~spd------g~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 991 (1132)
-...|.|+++.|. ++++|.|.. |++|+|+++.+.+......+ .+.. .+..+.-+.+ ....+|.++ .|
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L---~~~~-~p~si~l~~~-~~~~~L~igl~d 626 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML---GGEI-IPRSILMTTF-ESSHYLLCALGD 626 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC---CSSC-CEEEEEEEEE-TTEEEEEEEETT
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC---CCCC-CCcEEEEEEe-CCCcEEEEEeCC
Confidence 3567999999763 368898886 99999999987554332222 1111 1122333344 233456665 67
Q ss_pred CeEEEEeC---CCCceee--cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 992 SQISVYDS---KLECSRS--WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 992 ~~v~vwd~---~~~~~~~--~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
|.+.-+.+ ++..... ...+ ..++.=..|...|..-+.+..+.-..++...
T Consensus 627 G~l~~~~~d~~tg~l~d~r~~~LG---~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~ 681 (1158)
T 3ei3_A 627 GALFYFGLNIETGLLSDRKKVTLG---TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN 681 (1158)
T ss_dssp SEEEEEEECTTTCCEEEEEEEECC---SSCCEEEEEESSSCEEEEEESSSCEEEEESS
T ss_pred CeEEEEEEcCCCCccccceeEEcC---CCceEEEEEeeCCceeEEEECCCCEEEEEcC
Confidence 87655544 3322211 1111 3455555555445433333335555555443
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=6.6e-05 Score=68.05 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=76.7
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.+ ++|+|+.|.||||+.+|..++|..||.+.-..+... .+.+++|+.+..+.++.+++....++. ++.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4555 999999999999999999999999999887777777 999999999999999888877766654 4667
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1132)
-..|+..|++.= ..-|..+|++.+.
T Consensus 107 ~~lL~~fL~~~~----------------~~~ll~Iin~~i~ 131 (138)
T 2j4b_A 107 FDLLINFLEERN----------------LTYILKILNQHLD 131 (138)
T ss_dssp HHHHHHHHHHTT----------------CHHHHHHHHHHEE
T ss_pred HHHHHHHHHHCC----------------ChHHHHHHHHhee
Confidence 788888887742 1267778877654
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.53 E-value=5.6e-05 Score=60.78 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=32.8
Q ss_pred CCcchHHHHHHHHHhhhhccHHHHHHHHHHHcCCC
Q 001176 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1132)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1132)
|+....||+.||..||.|.||..||.+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999983
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.026 Score=59.90 Aligned_cols=197 Identities=11% Similarity=0.189 Sum_probs=125.6
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC----CCc--EEEEEEcC--CCcEEEEEC--CCCe
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP----NKQ--LCIVTCGD--DKMIKVWDV--VAGR 485 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d----~~~--~~l~s~~~--dg~v~vwd~--~~~~ 485 (1132)
...+++....++-+.+||+ .|+.+.. +.. +.++.+..-|+ |+. +.+++.-. +++|.+|++ .++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS---YNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE---ECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE---ccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3445666667788999999 6666552 322 56677766652 222 23455555 689999976 3443
Q ss_pred EEEEecC------CC-CCeEEEEe--eccCCccEEEEEecCCeEEEEEcCCC-------CceEEecCCCCeEEEEEEcCC
Q 001176 486 KQYTFEG------HE-APVYSVCP--HHKESIQFIFSTAIDGKIKAWLYDYL-------GSRVDYDAPGNWCTMMAYSAD 549 (1132)
Q Consensus 486 ~~~~~~~------h~-~~v~~i~~--~~~~~~~~l~s~s~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~s~~ 549 (1132)
+..+.. .. ..+..+|+ ++.....+++....+|.+..|++... +.+..+.. .+.+..++..+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 555522 11 56677887 44433347888899999999998432 22334443 457888888888
Q ss_pred CCEEEEEecCCCCCCeEEEEeCC-----CCceeeeec-cccCCceEEEEE--eCCCC-EEEEEE-cCCeEEEEECC-CCe
Q 001176 550 GTRLFSCGTSKEGESHLVEWNES-----EGAIKRTYS-GFRKRSLGVVQF--DTTRN-RFLAAG-DEFQIKFWDMD-NMN 618 (1132)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~-----~~~~~~~~~-~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~ 618 (1132)
..+|+.+-. +.-|..++.+ +++.+..+. ++-...+..+++ .++++ +|++.+ .+..+.+||.. +.+
T Consensus 191 ~g~Lyv~eE----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 191 YGRLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp TTEEEEEET----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCeEEEecc----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence 888888853 4447777855 345555543 222235777877 45555 677766 67899999996 666
Q ss_pred eEEEEe
Q 001176 619 MLTTVD 624 (1132)
Q Consensus 619 ~~~~~~ 624 (1132)
.+..+.
T Consensus 267 ~vg~f~ 272 (355)
T 3amr_A 267 YVADFR 272 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666665
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.22 Score=53.86 Aligned_cols=259 Identities=9% Similarity=0.102 Sum_probs=156.5
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..+|.+.|+..+..+..-.-. ..+.-.+|..+.++.-. ...+.|+|+++...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCCC-
Confidence 457999999886654332221 22355789888777654 7899999999999998887653 45556665443
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCcc
Q 001176 643 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 722 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1132)
.|+..+ +..|+-|++.......+.+..|..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 455554 4489999986543444444433211
Q ss_pred CcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc-------cceeEE
Q 001176 723 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 795 (1132)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~v 795 (1132)
....|.....+++.++++..+- .|.+.+
T Consensus 149 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 149 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 1234555666666666554332 366677
Q ss_pred EeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC-----CEEEEee----CCeEEEEECC
Q 001176 796 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMSAS----GGKVSLFNMM 866 (1132)
Q Consensus 796 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg-----~~la~~s----dg~i~vwd~~ 866 (1132)
|..+.... ..+.| | .... ..+-.+| ..++.+. .++++|.++.
T Consensus 184 YS~er~~s------------------------Q~ieG--h-aa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~ 234 (494)
T 1bpo_A 184 YSVDRKVS------------------------QPIEG--H-AASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (494)
T ss_dssp EESTTCCE------------------------EEECC--S-EEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred eecccccc------------------------chhee--e-eeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 76543111 11222 3 1111 1111122 1333333 3789999985
Q ss_pred CC--------e-EEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 867 TF--------K-VMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 867 ~~--------~-~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
.. + ....+-. ..+-..++..++ .-.++..-+.-|.|++||+.++.++..-+--.+.|..-+......
T Consensus 235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~ 313 (494)
T 1bpo_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA 313 (494)
T ss_dssp CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTT
T ss_pred CCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCC
Confidence 42 1 1111111 234467888998 667888899999999999999998877665566666555555555
Q ss_pred EEEEEcCCCcEEEEECCCcc
Q 001176 935 ALVSSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 935 ~l~s~~~D~~i~iwd~~~~~ 954 (1132)
=++.....|.|.--.++...
T Consensus 314 Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 314 GIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEETTCEEEEEEECTTT
T ss_pred cEEEEccCceEEEEEEcccc
Confidence 56666688888777776654
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=67.03 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=79.1
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+||.|.||||+.+| .++|..||.+.-..+...+.+.+++|+.+..+.++.+++....++. ++.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 5555 99999999999999999 9999999998777776667889999999999998888887776655 4666
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q 182 (1132)
-..|+..|++.-. .-.+-|..+|++.+..+
T Consensus 109 ~~lL~~fL~~~~~-------------~gg~~ll~Iin~~i~i~ 138 (148)
T 2j49_A 109 LNLLLYFLNENES-------------IGGSLIISVINQHLDPN 138 (148)
T ss_dssp HHHHHHHHHHTGG-------------GTHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHcCc-------------ccHHHHHHHHHHheeEe
Confidence 7788888876322 11336888888875543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.059 Score=58.88 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=125.5
Q ss_pred CCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe-EEEEee---CCCCCeEEEEEeCC---CCCeEEEEeC---C----CcE
Q 001176 838 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SSV 903 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~---d----g~v 903 (1132)
.....++|.|||+++++-.+|.|+++|. +++ .+..+. ........|+|+|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3468899999998666655899999974 454 222221 12345789999993 3555554432 3 567
Q ss_pred EEEEcccc-------eee-eeecc-ccCCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCccccc----
Q 001176 904 QIYNVRVD-------EVK-TKLKG-HQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLK---- 957 (1132)
Q Consensus 904 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~l~s~~~D-------------~~i~iwd~~~~~~~~---- 957 (1132)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. +.|.-++.+.. ...
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 77776543 111 11221 11124679999999988875532 34444444321 000
Q ss_pred --ceeeeCCCCCCCCCCCceeEEECC-CCcEEEEE--eCC--eEEEEeCCCC-----------------ceeecCCCCCC
Q 001176 958 --SRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HES--QISVYDSKLE-----------------CSRSWSPKDAL 1013 (1132)
Q Consensus 958 --~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~--~v~vwd~~~~-----------------~~~~~~~~~~h 1013 (1132)
.... ..++ .....++|+| +|.++++- .+. .|.+...... .+..+. ..
T Consensus 187 ~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~- 257 (354)
T 3a9g_A 187 PNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SE- 257 (354)
T ss_dssp TTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TC-
T ss_pred CCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CC-
Confidence 0000 0111 2457899999 67766652 222 2333222110 011110 11
Q ss_pred CCCeEEEEEc-------cCCCEEEEEecCCcEEEEeCCCc-cee--cccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1014 PAPISSAIYS-------CDGLLVYAGFCDGAIGVFDAETL-RFR--CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1014 ~~~i~~i~~s-------~dg~~las~~~dg~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
......++|. .+|.++++....+.|...+++.. +.. ..+. .+....+..+++.| |+.+.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~----------~~~~~rp~~v~~~p-DG~ly 326 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF----------KNVFGRLRDVVIDD-DGGIL 326 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC----------TTTSCCEEEEEECT-TSCEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec----------cCCCCCeeEEEECC-CCcEE
Confidence 3457788883 57777777666778888888753 221 1111 12235688999999 67766
Q ss_pred EEEe
Q 001176 1084 ALGM 1087 (1132)
Q Consensus 1084 ~s~~ 1087 (1132)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.025 Score=61.06 Aligned_cols=207 Identities=12% Similarity=0.080 Sum_probs=117.9
Q ss_pred CeEEEEEcCCCCeEEEEe------------CCCeEEEEEecCCC-ceeeeeeeec-----ccCCEEEEEEec--CCCcEE
Q 001176 407 SVNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTG-ELRQHLEIDA-----HVGGVNDIAFAH--PNKQLC 466 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~------------~dg~i~iwd~~~~~-~~~~~~~l~~-----h~~~v~~v~~s~--d~~~~~ 466 (1132)
..-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345677788886666652 68999999987432 12221 2332 234567777766 454323
Q ss_pred EEEEcC--CCcEEEEECCCC--e--EEEEecCC-CCCeEEEEeeccCCccEEEEEec-----------------CCeEEE
Q 001176 467 IVTCGD--DKMIKVWDVVAG--R--KQYTFEGH-EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKA 522 (1132)
Q Consensus 467 l~s~~~--dg~v~vwd~~~~--~--~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~-----------------dg~i~~ 522 (1132)
++.-.. +.+|.+|++..+ . .+.++.+. -...+.+.+.++ |.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~--G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP--EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET--TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC--CCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333333 567888876643 2 23344432 245788888764 466666541 244444
Q ss_pred EEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-Cce--eeeeccccCCceEEEEEeC-CCC
Q 001176 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRN 598 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 598 (1132)
+|. ++. ..+...-...+.++|+||++.|+.+.. ..++|+.|++.. ++. .+.+. .......+++.+ +|+
T Consensus 208 ~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YSP--NDV-RVVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGD 279 (355)
T ss_dssp ECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCC
T ss_pred EEC--CeE-EEeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCc
Confidence 443 322 222222345688999999999888753 356799999863 332 22332 123567789999 588
Q ss_pred EEEEEEcC-CeEEEEECC--CCeeEEEEe
Q 001176 599 RFLAAGDE-FQIKFWDMD--NMNMLTTVD 624 (1132)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 624 (1132)
+.+++..+ +.|..|+.. .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 87766533 345555544 244455444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.05 Score=59.51 Aligned_cols=230 Identities=14% Similarity=0.113 Sum_probs=120.5
Q ss_pred CeeEEEEeeCCCEEEEeeCCeEEEEECCCCeE--EEEee---CCCCCeEEEEEeCC---CCCeEEEEeCC-----CcEEE
Q 001176 839 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQ---DNNIIAIGMED-----SSVQI 905 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~d-----g~v~i 905 (1132)
....++|.|||+++++-.+|.|++++ +++. +..+. ........|+|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999966665589999998 3432 22221 12346789999993 25555544432 67888
Q ss_pred EEcccce------eeeeec---cccCCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCcccccceee--
Q 001176 906 YNVRVDE------VKTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLKSRFI-- 961 (1132)
Q Consensus 906 wd~~~~~------~~~~l~---~h~~~V~~l~~spdg~~l~s~~~D-------------~~i~iwd~~~~~~~~~~~~-- 961 (1132)
|+...+. .+..+. +.......|+|.|||.+.++.+.. +.|.-++.+. ........
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence 8876431 112233 111123689999999877775432 4455555443 10000000
Q ss_pred -------eCCCCCCCCCCCceeEEECC-CCcEEEEE-eCCe--------EEEEeCCCC-----------------ceeec
Q 001176 962 -------QAPAGRQSPLVGETKVQFHN-DQTHLLVV-HESQ--------ISVYDSKLE-----------------CSRSW 1007 (1132)
Q Consensus 962 -------~~~~~~~~~~~~v~~~~~s~-dg~~l~~~-~d~~--------v~vwd~~~~-----------------~~~~~ 1007 (1132)
....++ .....++|+| +|.+.++- .... |.+...... ....+
T Consensus 189 ~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 189 RRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp CTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000011 2356789999 66666652 2222 333222110 00011
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC-CCccccccccCCCCCCcEEEEeCCCCCCeEEEE
Q 001176 1008 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG-PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1086 (1132)
Q Consensus 1008 ~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 1086 (1132)
.+......++| .+|.++++....+.|...+++......... ....+ .....+..+++.| |+.+.++.
T Consensus 265 ----~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~------~~~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 265 ----PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL------SGFGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp ----TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE------ESSCCEEEEEECT-TSCEEEEE
T ss_pred ----CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec------ccCCCeeEEEECC-CCcEEEEE
Confidence 11234567777 567766666666777777776443110000 00000 1124688999999 66666655
Q ss_pred e
Q 001176 1087 M 1087 (1132)
Q Consensus 1087 ~ 1087 (1132)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.056 Score=57.67 Aligned_cols=195 Identities=10% Similarity=-0.036 Sum_probs=98.4
Q ss_pred CCCeEEEEeCC-----CeEEEEEecCCCc--eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001176 416 DGLMLGVAFSK-----HIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 483 (1132)
Q Consensus 416 dg~~las~~~d-----g~i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~ 483 (1132)
+++.++.|+.+ ..+.+||..+++. ......+.........+. .+++ +++.|+.+ ..+.++|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67778888755 3588999887651 221112221111222222 2555 56666643 3688999888
Q ss_pred CeEEE--EecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 484 GRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 484 ~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.+... .+......-..+.+ ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++.+
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 76433 22211111122222 33677777655 457888887654333211111111111112256666676
Q ss_pred ecCCCC-CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCee
Q 001176 557 GTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 619 (1132)
Q Consensus 557 ~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (1132)
+.+... ...+.+||+.+.+....-.......-.+++ .-++..++.||.+ ..+.+||+.+.+.
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 653322 356999999877644322111110111122 2256666667654 4577888877654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.066 Score=56.33 Aligned_cols=164 Identities=10% Similarity=0.060 Sum_probs=106.1
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeeccccccccccccc--CCCCcCeEEEEE---cCCCCe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL--NDAAISVNRCVW---GPDGLM 419 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~---spdg~~ 419 (1132)
--.+++|.+....++++.-..++|..|+...+..... .+. .+. ......+..|.| .|++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-------------~~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-------------GASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-------------TTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-------------CccccCCCcceeeEEEEeccCCCCcE
Confidence 3457899886665666666889999999976543221 000 000 011224578999 688888
Q ss_pred EEEEe-------------CCCeEEEEEec---CCCceeeeeeeeccc-----------CCEEEEEEecCCCcEEEEEEcC
Q 001176 420 LGVAF-------------SKHIVHLYTYN---PTGELRQHLEIDAHV-----------GGVNDIAFAHPNKQLCIVTCGD 472 (1132)
Q Consensus 420 las~~-------------~dg~i~iwd~~---~~~~~~~~~~l~~h~-----------~~v~~v~~s~d~~~~~l~s~~~ 472 (1132)
+++.. .+..|..||+. +++.+... .|.... ....+++..++|+ ..++++.
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~ 156 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL 156 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCC
Confidence 77643 26779999999 66654322 232221 2488999999999 7788887
Q ss_pred C-CcEEEEECCCCeEEEEec------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 473 D-KMIKVWDVVAGRKQYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 473 d-g~v~vwd~~~~~~~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
- +.|...+.. |+.+..+. ......+.|+++|++ ..|++....|.+..+|+...
T Consensus 157 ~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg--~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 157 GMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHS--NKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTT--TEEEEESSSSSEEEEECSSS
T ss_pred CCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCC--CEEEEEcCCCeEEEEcCCCC
Confidence 7 877777743 44333321 112336789998855 67777766999999998853
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.037 Score=59.89 Aligned_cols=108 Identities=12% Similarity=0.150 Sum_probs=80.8
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCC----CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee-----
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV----- 913 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~----- 913 (1132)
...+.+|..++.+.++.||.-++......+.+... -..|..+..+| +|++||..+. ..|.|-.+..+..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCccc
Confidence 34567889999998999999998755455555543 23688999999 9999998754 4799988873310
Q ss_pred -------eeeecc------ccCCeeEEEEcCCC---CEEEEEcCCCcEEEEECCC
Q 001176 914 -------KTKLKG------HQNRITGLAFSPTL---NALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 914 -------~~~l~~------h~~~V~~l~~spdg---~~l~s~~~D~~i~iwd~~~ 952 (1132)
...+.- ...+|..+.|+|-+ ..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 111211 24679999999964 6899999999999999986
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.048 Score=59.59 Aligned_cols=229 Identities=12% Similarity=0.013 Sum_probs=117.1
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeee---cccCCEEEEEEecC---CCcEEEEEEcCC-----Cc
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID---AHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 475 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~---~h~~~v~~v~~s~d---~~~~~l~s~~~d-----g~ 475 (1132)
....++|.|||+++++ ..+|.|.+++ .+. ......+. ........|+|+|+ +.. +.++-... +.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCccE
Confidence 4678999999995555 5679999998 332 22111111 12346789999998 553 33333322 57
Q ss_pred EEEEECCCCe-----EE-EEec---CCCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEcCCC-----
Q 001176 476 IKVWDVVAGR-----KQ-YTFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 528 (1132)
Q Consensus 476 v~vwd~~~~~-----~~-~~~~---~h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~----- 528 (1132)
|..++...+. .+ ..+. +.......++|.|+ |.+.++.+. .|.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876432 11 2233 11122357888764 456555432 245555555420
Q ss_pred -------CceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCC-----CCeEEEEeCCC----------------Cceeee
Q 001176 529 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 579 (1132)
Q Consensus 529 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 579 (1132)
.....+.........++|+| ++++.++-.. .+. ...|.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 01111111123456789999 5665544321 111 11243332211 011222
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee------EEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
+..+ . ....++| .+|..+++.-..+.|...++..... ...+-. ....+..+++.|||.++++..
T Consensus 264 ~~~~-~-ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQG-F-PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTC-C-CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cCCC-C-CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 2111 1 3456777 3565555544667777777654321 112211 123678999999997766654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.24 Score=53.93 Aligned_cols=231 Identities=16% Similarity=0.070 Sum_probs=119.3
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC---CCe
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 419 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 419 (1132)
-...++++|.|||+ ++++- .+|.|.+++ .+++ .. +. ++ . +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~e-~~g~I~~~d-~~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTE-RPGRLVLIS-PSGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEE-TTTEEEEEC-SSCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEEe-CCCEEEEEe-CCCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35789999999997 55554 459999887 3443 11 10 00 0 11223456889999998 454
Q ss_pred EEEEeC----C----CeEEEEEecCCC-cee---ee-eeee-cccCCEEEEEEecCCCcEEEEEEcC-------------
Q 001176 420 LGVAFS----K----HIVHLYTYNPTG-ELR---QH-LEID-AHVGGVNDIAFAHPNKQLCIVTCGD------------- 472 (1132)
Q Consensus 420 las~~~----d----g~i~iwd~~~~~-~~~---~~-~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~------------- 472 (1132)
|.++.. + ..|..|+...+. .+. .. ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 544432 3 568888876541 111 11 1122 1111346799999997 4554332
Q ss_pred CCcEEEEECCCCe----------EEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCC----------
Q 001176 473 DKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLG---------- 529 (1132)
Q Consensus 473 dg~v~vwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~---------- 529 (1132)
.|.|.-.+.. |+ .+.. .++. ....++|++.. +.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 1345555533 22 1221 2333 34578887732 24444433222 13222 1111
Q ss_pred --------ceEEecCCCCeEEEEEEc-------CCCCEEEEEecCCCCCCeEEEEeCCCC-cee--eeeccccCCceEEE
Q 001176 530 --------SRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVV 591 (1132)
Q Consensus 530 --------~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~ 591 (1132)
....+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..+
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 112221223456788884 4665555543 3567888887743 322 22221112367889
Q ss_pred EEeCCCCEEEEE
Q 001176 592 QFDTTRNRFLAA 603 (1132)
Q Consensus 592 ~~~~~~~~l~~~ 603 (1132)
++.|||..+++.
T Consensus 318 ~~~pDG~lyv~~ 329 (354)
T 3a9g_A 318 VIDDDGGILIST 329 (354)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 999998765554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.16 Score=55.45 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=126.6
Q ss_pred CeeEEEEeeCCC-EEEEeeCCeEEEEECCCCeEEEEee-------CCCCCeEEEEEeCC---CCCeEEEEeC-------C
Q 001176 839 SAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME-------D 900 (1132)
Q Consensus 839 ~v~~~~~s~dg~-~la~~sdg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~sp~---~~~~lasg~~-------d 900 (1132)
....++|.|||+ ++++-..|.|++++.. ++....+. ........|+|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999999 6655558999999854 33221111 12345689999993 3555544332 2
Q ss_pred CcEEEEEcccc-------ee-eeeec-----cccCCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCcc
Q 001176 901 SSVQIYNVRVD-------EV-KTKLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWE 954 (1132)
Q Consensus 901 g~v~iwd~~~~-------~~-~~~l~-----~h~~~V~~l~~spdg~~l~s~~~D-------------~~i~iwd~~~~~ 954 (1132)
..|..|++..+ +. +..+. .|. -..|+|.|||.+.++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 11 11121 122 3579999999877776542 356666655320
Q ss_pred cc----------cceeeeCCCCCCCCCCCceeEEECC-CCcEEEEE--eCCeEEEEeC-CCCce----------------
Q 001176 955 KL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HESQISVYDS-KLECS---------------- 1004 (1132)
Q Consensus 955 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~v~vwd~-~~~~~---------------- 1004 (1132)
.. ..... ..++ .....++|.| +|.+.++- .++.=.|.-+ .+..-
T Consensus 176 p~~npf~~~~~~~~~i~--a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW--SYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEE--EECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEE--EEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 00000 0011 3467899999 66666552 2222233322 11100
Q ss_pred --------eecC-CC--CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCC
Q 001176 1005 --------RSWS-PK--DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN 1066 (1132)
Q Consensus 1005 --------~~~~-~~--~~h~~~i~~i~~s~-------dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1132)
..+. +. ..+......++|.. +|.++++....+.|...+++.++...... .+ ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~-----~~~ 321 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---IL-----TDR 321 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ES-----GGG
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cc-----cCC
Confidence 0000 00 01123566778763 57777777677888888887654332210 00 122
Q ss_pred CCCcEEEEeCCCCCCeEEEEe-CCCcEEEEec
Q 001176 1067 TAHPLVIAPHPSEPNQIALGM-SDGAVHVVEP 1097 (1132)
Q Consensus 1067 ~~~v~~~~~~p~~~~~l~s~~-~Dg~i~vW~~ 1097 (1132)
...+..+++.| |+.+.++.. .+| +||++
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 35788999999 777666443 344 45555
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.082 Score=56.40 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=115.8
Q ss_pred CCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCeE
Q 001176 416 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRK 486 (1132)
Q Consensus 416 dg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~~~~ 486 (1132)
++..++.|+.+ ..+..||..+.+ ......+......-..+. -++. +++.|+.+ ..+.+||..+.+.
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence 34455566543 357888887753 222111221111111222 2555 66666644 3688999888764
Q ss_pred EEE--ecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCe-EEEEEEcCCCCEEEEEec
Q 001176 487 QYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 487 ~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~ 558 (1132)
... +......-..+.+ ++.+++.|+.++ .+.+||+.+..-...-...... -.+++. -+++.++.++.
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCE
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCC
Confidence 332 1111111122222 336777777653 4777887765433321111111 111222 35666666664
Q ss_pred CCCC---CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCCCC
Q 001176 559 SKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 559 ~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+... ...+.+||+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3458999998775433211111101112222 256666667653 4689999988765543322211
Q ss_pred CcceEEEcCCCCEEEEEeCCC-----cEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~ 661 (1132)
.....+...++.+++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222233677777777653 4888888765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.17 Score=53.96 Aligned_cols=234 Identities=6% Similarity=-0.087 Sum_probs=117.6
Q ss_pred eEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----CeEE
Q 001176 357 TILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVH 430 (1132)
Q Consensus 357 ~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g~i~ 430 (1132)
.+++.|+. ...+.+||..+++...... .+ .....-.++. -+++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~----------~p-------~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC----------PF-------EKRRDAACVF--WDNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC----------CS-------CCCBSCEEEE--ETTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC----------CC-------cccceeEEEE--ECCEEEEEeCCCCCCcceEE
Confidence 46777765 3578888888765432100 00 0111112222 267778888755 5688
Q ss_pred EEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC------CcEEEEECCCCeEEEE--ecCCCCCeEEEEe
Q 001176 431 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQYT--FEGHEAPVYSVCP 502 (1132)
Q Consensus 431 iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~h~~~v~~i~~ 502 (1132)
+||..+++- .....+.........+. -+++ +++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSW-YSKLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEE-EEEECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeE-EECCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 899887642 22212221111122222 2555 66667655 4688999988765432 1111111112221
Q ss_pred eccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC-CCCeEEEEeCC
Q 001176 503 HHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE-GESHLVEWNES 572 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~ 572 (1132)
++.+++.|+. -..+.+||+.+..-...-..........+..-+++.++.++.+.. ....+.+||+.
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 3366666654 345788888766433321111111111111125666666654221 12458999998
Q ss_pred CCceeee--eccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEE
Q 001176 573 EGAIKRT--YSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLT 621 (1132)
Q Consensus 573 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 621 (1132)
+.+-... +..... ...++.+ ++..++.||.+ ..+.+||..+.+-..
T Consensus 225 ~~~W~~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 225 LNEWKMVSPMPWKGV-TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTEEEECCCCSCCBS-CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCcEEECCCCCCCcc-ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 7654332 111111 1222222 56677777743 568899998866443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.72 Score=50.00 Aligned_cols=239 Identities=7% Similarity=0.096 Sum_probs=145.2
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY 488 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~~ 488 (1132)
+.-.+|..+.||.=. ..++.|+|+++.+.++.. . ....|.-=.|-.+.. |+-.+ +..|+-|++.. ..+++
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~---~-~~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~k 140 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH---T-MTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVK 140 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE---E-CSSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce---e-cCCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchh
Confidence 345677777776654 678999999997655422 1 234676777766554 44333 56899999874 35666
Q ss_pred EecCCCC--CeEEEEeeccCCccEEEEEe-------cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC---CEEEEE
Q 001176 489 TFEGHEA--PVYSVCPHHKESIQFIFSTA-------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---TRLFSC 556 (1132)
Q Consensus 489 ~~~~h~~--~v~~i~~~~~~~~~~l~s~s-------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~ 556 (1132)
.|..|.. ...-+.+..+.+.++++..+ ..|.+.+|..+.. ....+.+|......+....+. +.+..+
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEE
Confidence 6665532 23333333444556665443 3477889987743 334455555444333332211 233333
Q ss_pred ecCCCCCCeEEEEeCCCC---c------eeeee-cc-ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 557 GTSKEGESHLVEWNESEG---A------IKRTY-SG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~---~------~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
.... ..+.+++.++... . .+..+ .. ....-..++..++....++....-|.|++||+.++.++..-..
T Consensus 220 ~r~~-~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 220 VRGQ-AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp ECST-TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EecC-CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 3222 2467999988542 1 11111 11 1111345688899889999999999999999999999988775
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
... .|...+-..+..=++.....|.|.--.++..
T Consensus 299 s~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 299 SGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp CSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred cCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 543 5655555555555666668888877777655
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.057 Score=57.64 Aligned_cols=234 Identities=12% Similarity=0.018 Sum_probs=117.4
Q ss_pred CCCeEEEEe-CC-----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001176 416 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 484 (1132)
Q Consensus 416 dg~~las~~-~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~~ 484 (1132)
++..++.|+ .+ ..+.+||..+++- .....+....... .+...++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~--~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYV--ASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSC--EEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccc--cEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 3588888877532 2111121111111 12223455 66667654 46899998877
Q ss_pred e---EEEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 485 R---KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 485 ~---~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+ .... +......-..+.+ ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111122222 33677777654 3578888876553332211111111111122666666
Q ss_pred EEecCCC-CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCC
Q 001176 555 SCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 555 ~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
.++.+.. ....+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+....-.....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 6664322 13568999998776443311111101112222 245666667653 5689999988775544322221
Q ss_pred CCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 629 LPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
.....+..-++++++.|+.+ ..+.+||..+.
T Consensus 244 --r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 244 --RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp --CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred --ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 12222233367777777765 35778887765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.11 Score=55.43 Aligned_cols=232 Identities=7% Similarity=-0.027 Sum_probs=116.7
Q ss_pred CeEEEEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeEEEE--
Q 001176 418 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYT-- 489 (1132)
Q Consensus 418 ~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~-- 489 (1132)
.+++.|+. ...+.+||..+++-. ....+.........+. -++. +++.|+.+ ..+.++|+.+++....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 356888888875422 1111211111122222 3555 66677654 6788999988765332
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC-
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG- 562 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~- 562 (1132)
+......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..........+..-+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 2111111122222 33677777765 458888887654333211111111111112366666666643322
Q ss_pred ----CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 563 ----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 563 ----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
...+.+||+.+.+....-.......-.+++.. ++..++.||.+ ..+.+||+.+.+-...-..... ...
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~ 240 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--GVT 240 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--BSC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--ccc
Confidence 35689999988754332211111011122222 55666666543 4688999988765443222211 111
Q ss_pred eEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 634 RLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
..+..-++.+++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 12222267788888754 46788888765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.57 Score=52.85 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=63.1
Q ss_pred CCeeEEEEeeCCCEEEEeeC-CeEEEEECCCCeE--EEEeeC------CCCCeEEEEEeCC---CCCeEEEEeC------
Q 001176 838 ESAACIALSKNDSYVMSASG-GKVSLFNMMTFKV--MTMFMS------PPPAATFLAFHPQ---DNNIIAIGME------ 899 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sd-g~i~vwd~~~~~~--~~~~~~------~~~~i~~l~~sp~---~~~~lasg~~------ 899 (1132)
...+.++|.|||+++++-.. +.|++++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34679999999998887665 4799888655543 222221 1345679999994 4444444332
Q ss_pred ------CCcEEEEEcccc-------eeee-eecc-ccCCeeEEEEcCCCCEEEEEcC
Q 001176 900 ------DSSVQIYNVRVD-------EVKT-KLKG-HQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 900 ------dg~v~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655421 1111 1221 1123678999999998888764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.49 Score=52.87 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=70.3
Q ss_pred CeeEEEEeeCCCEEEEee--CCeEEEEECCCC------eE-------EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 001176 839 SAACIALSKNDSYVMSAS--GGKVSLFNMMTF------KV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 903 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~------~~-------~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v 903 (1132)
....+.++|||+++++++ +.++.++|+.+. +. ..... -.-.....+|.+ +|....+..-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345789999999999998 789999998742 11 11122 334568899999 78666677799999
Q ss_pred EEEEcccc----------eeeeeeccccCCeeEEEE------cCCCCEEEEEc
Q 001176 904 QIYNVRVD----------EVKTKLKGHQNRITGLAF------SPTLNALVSSG 940 (1132)
Q Consensus 904 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~l~s~~ 940 (1132)
.-|++... ..+.++.-|..+ -.+.- .|||++|++..
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 99999864 456666655443 22333 57899999875
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.66 Score=49.72 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=121.6
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEE--EEe----eCCCCCeEEEEEeCC---CCCeEEEEe--CCCcEE
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TMF----MSPPPAATFLAFHPQ---DNNIIAIGM--EDSSVQ 904 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~i~~l~~sp~---~~~~lasg~--~dg~v~ 904 (1132)
-...+.++|.|||+++++-. .|.|++++..+++.. ..+ .........|+|+|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34568999999999888887 799999987655432 222 122455789999993 344444322 344566
Q ss_pred EEEcccc----------ee-eeeec---cccCCeeEEEEcCCCCEEEEEcC-------------CCcEEEEECCCccccc
Q 001176 905 IYNVRVD----------EV-KTKLK---GHQNRITGLAFSPTLNALVSSGA-------------DAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 905 iwd~~~~----------~~-~~~l~---~h~~~V~~l~~spdg~~l~s~~~-------------D~~i~iwd~~~~~~~~ 957 (1132)
-|.+..+ +. +..+. .|. ...|+|.|||.+.++.+. .|.|.-.+.+.. ...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~ 187 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAP 187 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccC
Confidence 5665441 11 11122 233 457999999998888663 234444444321 000
Q ss_pred ceee----eCCCCCCCCCCCceeEEECCCCcEEEE--EeCCeEEEEeC-CCCceeecCCC----------------CCCC
Q 001176 958 SRFI----QAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQISVYDS-KLECSRSWSPK----------------DALP 1014 (1132)
Q Consensus 958 ~~~~----~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~-~~~~~~~~~~~----------------~~h~ 1014 (1132)
.... ....|+ .....++|+|+|.+.++ +.++.-.+.-+ .+.. --|... ..+.
T Consensus 188 ~nPf~~~~i~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n-yGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 188 GNPFPGSPVYSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN-YGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp TCSSTTCCEEEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCB-CCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CCCCCCCeEEeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCE-ecCCcccCCCCCccccCCcEecCCCC
Confidence 0000 000121 34678999999887777 33433333332 1111 000000 0001
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEE
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1086 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 1086 (1132)
.....|+|. +|.++...-..+.|....++.+..+.. +.....+....+..++..| ||.++++.
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~-------~e~~l~~~~gR~~dv~~~p-DG~lyv~t 325 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD-------PQAFLEGEYGRLRTVAPAG-GDKLWLVT 325 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC-------CEEESTTTSSCEEEEEEEE-TTEEEEEE
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecc-------eEEeecCCCCCccEEEECC-CCcEEEEE
Confidence 244566765 455555555555666666654432110 0011112335677888888 65555543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.14 Score=54.52 Aligned_cols=193 Identities=8% Similarity=0.014 Sum_probs=95.5
Q ss_pred CCCeEEEEeCCC-----eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC-----cEEEEECCCCe
Q 001176 416 DGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGR 485 (1132)
Q Consensus 416 dg~~las~~~dg-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg-----~v~vwd~~~~~ 485 (1132)
+++.++.|+.++ .+.+||..+.+ ......+.........+. -+++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRDRRSTLGAAV--LNGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCccccceEEEE--ECCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 677778877543 58888887753 222112221111122222 2455 566666543 57788988876
Q ss_pred EEEE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCC--CeEEEEEEcCCCCEEE
Q 001176 486 KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLF 554 (1132)
Q Consensus 486 ~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~ 554 (1132)
.... +....... +++.. ++.+++.|+.+ ..+.+||+.+..-...-.... .....+. -+++.++
T Consensus 136 W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv 209 (302)
T 2xn4_A 136 WFHVAPMNTRRSSV-GVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYA 209 (302)
T ss_dssp EEEECCCSSCCBSC-EEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred EeecCCCCCcccCc-eEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEE
Confidence 5432 11111111 22221 33666766643 347888887654333211111 1112222 2566667
Q ss_pred EEecCCCC-CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeE
Q 001176 555 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNML 620 (1132)
Q Consensus 555 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 620 (1132)
.++.+... ...+.+||+.+.+....-.......-..++ ..++..++.||.++ .+.+||+.+.+-.
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 76653221 346999999876543322111110111122 22566666676543 4788888776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.62 Score=50.67 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=117.9
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeee----ecccCCEEEEEEecC---CCcEEEEEEcC-------
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHVGGVNDIAFAHP---NKQLCIVTCGD------- 472 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l----~~h~~~v~~v~~s~d---~~~~~l~s~~~------- 472 (1132)
....|+|.|||+.|.++...|.|++++.+. ........+ ....+....++|+|+ +.. +.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 467899999999444555789999998543 211111011 112346789999996 553 3333222
Q ss_pred CCcEEEEECCCC--e--EEEE-ecC------CCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEcCCC
Q 001176 473 DKMIKVWDVVAG--R--KQYT-FEG------HEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL 528 (1132)
Q Consensus 473 dg~v~vwd~~~~--~--~~~~-~~~------h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~ 528 (1132)
...|..|++..+ + .... +.. ....-..++|.|+ |.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK--GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS--SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC--CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666433 1 1111 111 1112356888774 455555443 245666665532
Q ss_pred C------------ceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeC--------CCC-------------
Q 001176 529 G------------SRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE--------SEG------------- 574 (1132)
Q Consensus 529 ~------------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~--------~~~------------- 574 (1132)
- ....+.........++|.| +|++.++- ...++...|.+... ..+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d-~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNE-HGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEE-ECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEe-cCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1112222234577899999 55544432 21111112222110 000
Q ss_pred --------ceeeeeccccCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEc
Q 001176 575 --------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFN 638 (1132)
Q Consensus 575 --------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s 638 (1132)
.++..+..+ . ....+.|.. ++.++++.-..+.|...++..++.+.....- .....+..+++.
T Consensus 254 ~~~~~~~~~P~~~~~~~-~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDS-P-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSC-C-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCC-c-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 011111111 1 455677764 3555555557788888888766544332211 112367899999
Q ss_pred CCCCEEEEE
Q 001176 639 KEGSLLAVT 647 (1132)
Q Consensus 639 ~~~~~l~~~ 647 (1132)
|||.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999866543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.19 Score=53.82 Aligned_cols=230 Identities=10% Similarity=-0.019 Sum_probs=113.3
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----C------CcEEEEECCCCeEE
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQ 487 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d------g~v~vwd~~~~~~~ 487 (1132)
+++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 344555 568899988765221 22322222233333345666 6666663 1 12778898887643
Q ss_pred EEecCCCCCe--EEEEeeccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 488 YTFEGHEAPV--YSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 488 ~~~~~h~~~v--~~i~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
. +.....+- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++
T Consensus 81 ~-~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 81 G-MPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp E-CCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred E-CCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence 2 22111111 112221 33666777643 3588888876543221111111111112224566666666
Q ss_pred cCC--CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeEEEEeCCCCCC
Q 001176 558 TSK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 558 ~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
.+. .....+.+||+.+.+-...-.......-.+++. -++..++.||.++ .+.+||+.+.+-...-.....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence 411 123468999998765433221111101112222 2566777777543 588999988765544332221
Q ss_pred CcceEEEcCCCCEEEEEeCCC--------------cEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDN--------------GIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg--------------~i~iw~~~~~ 661 (1132)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 234 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 122222233667777777532 3667787665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.18 Score=63.04 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=122.8
Q ss_pred EEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-ceeeeeeccc
Q 001176 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGH 920 (1132)
Q Consensus 842 ~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 920 (1132)
+.-++|..+.+|.-...++.|||+++.+.+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 455778888888877889999999988777766543 3455555543 34555554 44799999964 2444555545
Q ss_pred ----cCCeeEEEEcCCCCEEEEEc-------CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE---CCCCcEE
Q 001176 921 ----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHL 986 (1132)
Q Consensus 921 ----~~~V~~l~~spdg~~l~s~~-------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l 986 (1132)
...|..-..+++.++++..| ..|.+.+|..+.+. -+...||... -..+.+ .+..+.+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~---F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAAS---FAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhh---hheeccCCCCCCceEE
Confidence 45677778899999988655 34788899887643 2334444311 001111 1112233
Q ss_pred EEEe----CCeEEEEeC-CC---Cce------eecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 987 LVVH----ESQISVYDS-KL---ECS------RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 987 ~~~~----d~~v~vwd~-~~---~~~------~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
+.+. .+.+++-++ .. ... ..+.+..+-.+--.+|..|+.-..+...+.-|.|.++|++||.++..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3232 367888887 21 111 111111111233346777888888888899999999999999998654
Q ss_pred C
Q 001176 1053 G 1053 (1132)
Q Consensus 1053 ~ 1053 (1132)
.
T Consensus 297 r 297 (1630)
T 1xi4_A 297 R 297 (1630)
T ss_pred c
Confidence 3
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=1 Score=48.38 Aligned_cols=194 Identities=11% Similarity=0.116 Sum_probs=107.3
Q ss_pred CeeEEEEccCCCeEEEEE------------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 345 NVMSMDFHPQQQTILLVG------------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..-.++..|+|. +++++ ..+|.|.++|..+..... ..+.+ ... . +.........+.
T Consensus 51 G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~---~g~--~-----~~~~~f~PhGi~ 118 (355)
T 3sre_A 51 GSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEI---IGN--T-----LDISSFNPHGIS 118 (355)
T ss_dssp CCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCE-EECEE---ECS--S-----CCGGGCCEEEEE
T ss_pred CcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEc---cCC--C-----CCcCceeeeeeE
Confidence 345666778775 33332 168899999987432111 01111 000 0 001223455666
Q ss_pred EcC--CCC-eEEEE-eC--CCeEEEEEecCCCc-eeeeeeeecc-cCCEEEEEEecCCCcEEEEEEc-------------
Q 001176 413 WGP--DGL-MLGVA-FS--KHIVHLYTYNPTGE-LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG------------- 471 (1132)
Q Consensus 413 ~sp--dg~-~las~-~~--dg~i~iwd~~~~~~-~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~------------- 471 (1132)
+.+ +|+ +|.++ .. +.+|.+|+++.+.. ......+.+. -...+++++.++|. +.++..
T Consensus 119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e~ 196 (355)
T 3sre_A 119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEM 196 (355)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHHH
T ss_pred EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccchh
Confidence 655 454 44444 22 56899999876533 2222333332 23678999999998 566653
Q ss_pred ----CCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCeEEEE
Q 001176 472 ----DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMM 544 (1132)
Q Consensus 472 ----~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~ 544 (1132)
..|.|..+|. ++. ..+...-..-+.++|+|++. .+.++-+..+.|..|+++...... .+ ...+..-.+
T Consensus 197 ~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~-~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 197 HLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp HTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEE
T ss_pred hccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCC-EEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceE
Confidence 1244555554 332 22222334578899988652 344555678899999987543221 23 224567788
Q ss_pred EEcC-CCCEEEEEe
Q 001176 545 AYSA-DGTRLFSCG 557 (1132)
Q Consensus 545 ~~s~-~~~~l~~~~ 557 (1132)
++.+ +|++.+++.
T Consensus 272 ~vD~e~G~lwva~~ 285 (355)
T 3sre_A 272 SVDPVTGDLWVGCH 285 (355)
T ss_dssp EECTTTCCEEEEEE
T ss_pred EEeCCCCcEEEEec
Confidence 8988 588777664
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.28 Score=52.34 Aligned_cols=232 Identities=7% Similarity=-0.038 Sum_probs=115.3
Q ss_pred CCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----C-----CcEEEEECC
Q 001176 416 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWDVV 482 (1132)
Q Consensus 416 dg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d-----g~v~vwd~~ 482 (1132)
++..++.|+.+ ..+.+||..+++-.. ...+......- +++ .-++. +++.|+. + ..+.++|+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEECCC
Confidence 56677777642 358888887754221 11111111111 122 22454 5666665 2 468899988
Q ss_pred CCeEEEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCC--CCeEEEEEEcCCCCEE
Q 001176 483 AGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRL 553 (1132)
Q Consensus 483 ~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l 553 (1132)
+.+.... +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-... ......+.+ +++.+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLY 172 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred CCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEE
Confidence 8764321 1111111122222 33677776644 35778888765433221111 111122222 56666
Q ss_pred EEEecCCCC-CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCC
Q 001176 554 FSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 554 ~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+.++.+... ...+.+||+.+.+....-.......-.+++.. ++..++.||.+ ..+.+||+.+.+....-....
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 666653321 35689999987654332111111011122222 56666667654 569999998876544322221
Q ss_pred CCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 252 ~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 252 R--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp C--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred C--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1 11122222367777777653 35778887765
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.62 Score=49.78 Aligned_cols=235 Identities=8% Similarity=-0.053 Sum_probs=114.2
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC-----C------
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-----K------ 426 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-----d------ 426 (1132)
+++.|+ ..+.+||..+++.... + +..........+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~-------------~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCA-------------S-----LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEE-------------E-----CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEecC-------------C-----CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 566676 5799999988763210 0 1111112223334458888888873 1
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC--------CcEEEEECCCCeEEEE--ecCCCCC
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYT--FEGHEAP 496 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~--~~~h~~~ 496 (1132)
..+.+||..+++- .....+.........+.+ +++ +++.|+.+ ..+.++|+.+.+-... +......
T Consensus 67 ~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEW-LGMPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEE-EECCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeE-EECCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 1267788776532 211111111111112222 444 56666632 4688999988764321 1111111
Q ss_pred eEEEEeeccCCccEEEEEec-C-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC-CCeEEEE
Q 001176 497 VYSVCPHHKESIQFIFSTAI-D-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG-ESHLVEW 569 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~-d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~w 569 (1132)
-..+.+ ++.+++.|+. + ..+.+||..+..-...-..........+..-+++.++.++.+..+ ...+.+|
T Consensus 142 ~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 142 HTVLSH----MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp CEEEEE----TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEE
T ss_pred eeEEEE----CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEE
Confidence 112221 3367777766 2 458888887654332211111111111112266777777653221 2358899
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeeEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------FQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 622 (1132)
|+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+-...
T Consensus 218 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 218 SITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 998775433321111101112222 255666667653 2477888887765544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.47 Score=50.81 Aligned_cols=230 Identities=13% Similarity=0.043 Sum_probs=111.0
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----CC-------cEEEEECCCCeEE
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQ 487 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----dg-------~v~vwd~~~~~~~ 487 (1132)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37888888765322 12221111222233345566 6777773 12 2778898877653
Q ss_pred EE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 488 YT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 488 ~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.. +...... .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.
T Consensus 92 ~~~~~p~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCL-FGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCS-CEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccc-cceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 21 1111111 122221 33677777764 34777887765433321111111111122246666666654
Q ss_pred CCC--CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 559 SKE--GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 559 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
+.+ ....+.+||+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+-...-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 211 13459999998876433221111101112222 255666667633 3577899887765443222211 1
Q ss_pred cceEEEcCCCCEEEEEeCC--------------CcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~d--------------g~i~iw~~~~~ 661 (1132)
....+...++.+++.|+.+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1222223356777777653 35777887765
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.13 E-value=1.9 Score=46.23 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=119.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC---CC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GL 418 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~ 418 (1132)
.-...+.|+|.|||+ ++++-...|.|++++..+++... +. .+ ..+.....+....|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~---v~--~~--------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTE---LG--EV--------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE---EE--EC--------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEee---ec--cc--------CceeecCCCCceeeEeccccccCC
Confidence 456789999999998 67776558999999866554311 00 00 0112334567899999996 34
Q ss_pred eEEEE---eCCCeEEEEEecCCC----c---eeee-eeee-cccCCEEEEEEecCCCcEEEEEEcC-------------C
Q 001176 419 MLGVA---FSKHIVHLYTYNPTG----E---LRQH-LEID-AHVGGVNDIAFAHPNKQLCIVTCGD-------------D 473 (1132)
Q Consensus 419 ~las~---~~dg~i~iwd~~~~~----~---~~~~-~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~-------------d 473 (1132)
+|... ..+..|.-|.+..+. . .+.+ ..+. +....-..|+|.|||. +.++.+. .
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~Gd~~~~~~~qd~~~~~ 173 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTGESGDTGLSQDRKSLG 173 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECBCTTCGGGTTCTTCST
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEECCCCCCccccCCCCCC
Confidence 44332 234567777766521 1 1111 1121 1112346799999997 5555432 2
Q ss_pred CcEEEEECCCCe----------EEEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCC-------------
Q 001176 474 KMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLG------------- 529 (1132)
Q Consensus 474 g~v~vwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~------------- 529 (1132)
|.|.-.+.. |+ .+.. .+|. ....++|+|. |.+.++- +.|+.-.+--+..+.
T Consensus 174 G~IlRi~~d-G~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~--G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~ 248 (347)
T 3das_A 174 GKILRMTPD-GEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDK--QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGG 248 (347)
T ss_dssp TCEEEECTT-SSBCTTCSSTTCCEEE-BCCS-BCCEEEECTT--CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCC
T ss_pred CEEEEEeCC-CCccCCCCCCCCeEEe-eCCC-CcceEEECCC--CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCC
Confidence 344444432 22 1222 2443 3557888774 3444433 223322222222111
Q ss_pred -----ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce----eeeeccccCCceEEEEEeCCCCEE
Q 001176 530 -----SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRF 600 (1132)
Q Consensus 530 -----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l 600 (1132)
....+..+......++|. +|..++.... ...|....+..... ...+.+.. ..+..++..|||..+
T Consensus 249 ~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~----~~~l~~v~~~~~~~~~~~e~~l~~~~-gR~~dv~~~pDG~ly 322 (347)
T 3das_A 249 SGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR----GERLWRIPLKGTAAAADPQAFLEGEY-GRLRTVAPAGGDKLW 322 (347)
T ss_dssp TTCCCCSEEECTTTCCEEEEEEE-TTEEEEEEST----TCSEEEEEEETTEESSCCEEESTTTS-SCEEEEEEEETTEEE
T ss_pred ccccCCcEecCCCCCCCcceEEE-cCceeecccc----CCEEEEEEecCCceecceEEeecCCC-CCccEEEECCCCcEE
Confidence 111222122244566665 3444444332 34465556554322 22233322 267888888888666
Q ss_pred EEEE
Q 001176 601 LAAG 604 (1132)
Q Consensus 601 ~~~~ 604 (1132)
++.+
T Consensus 323 v~td 326 (347)
T 3das_A 323 LVTS 326 (347)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.9 Score=48.30 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=117.0
Q ss_pred eeCCCEEEEee-C----CeEEEEECCCCeEEEEeeCCCCCe-EEEEEeCCCCCeEEEEeC----C-----CcEEEEEccc
Q 001176 846 SKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME----D-----SSVQIYNVRV 910 (1132)
Q Consensus 846 s~dg~~la~~s-d----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~~ 910 (1132)
.-++..++.|+ + ..+.+||..+.+-...-..+.... .+++. - ++.+++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 33566667665 2 468999988765322211111111 12222 2 5678888776 3 3688899877
Q ss_pred cee--eeeeccccCCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 911 DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 911 ~~~--~~~l~~h~~~V~~l~~spdg~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
.+- +..+......-..+. -+++.++.||.+ ..+.+||..+.+=.. +..... +......+.+ ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~---~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLT---RRIGVGVAVL--NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSS---CCBSCEEEEE--TT
T ss_pred CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCc---cccceEEEEE--CC
Confidence 642 222221111122222 267777777643 358888987754211 111110 0012222333 56
Q ss_pred cEEEEE-eC-----CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCcceeccc
Q 001176 984 THLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 984 ~~l~~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-----g~i~vwd~~~~~~~~~~ 1052 (1132)
+.++.+ .+ ..+.+||.....-............-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666664 22 4588999854443333221110111222222 77788888765 46999999887643221
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-----CcEEEEecCCCc
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAE 1101 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-----g~i~vW~~~~~~ 1101 (1132)
. +|.. ...| ..+.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 248 ~----~p~~-r~~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 248 P----MKHR-RSAL----GITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C----CSSC-CBSC----EEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C----CCCC-ccce----EEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 1111 0122 12222 56788888755 467788887765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.85 Score=57.26 Aligned_cols=89 Identities=7% Similarity=0.052 Sum_probs=56.6
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..+|.+.|+..+..+..-.- ...+.-.+|..+.++.- ....+.|+|+.+...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 44788999887664422211 12234578887766664 37899999999988777766543 45555554443
Q ss_pred EEEEEeCCCcEEEEEcCCc
Q 001176 643 LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|+..+ +..|.-|++...
T Consensus 118 ~l~lVT-~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGE 135 (1630)
T ss_pred eeEEEc-CCeEEEeccCCC
Confidence 444444 348899998654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.14 Score=49.91 Aligned_cols=144 Identities=13% Similarity=-0.036 Sum_probs=83.2
Q ss_pred CeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEE------EEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 839 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVM------TMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~------~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
.+..++|+|+|.+.++ .+|.+.-.+..+.... ..+-. --..-.++.|.| +|.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 8888777776442110 11100 001147899999 8888877 5698887776432
Q ss_pred eeee-------eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc----ceeeeCCCCCCCCCCCceeEEEC
Q 001176 912 EVKT-------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----SRFIQAPAGRQSPLVGETKVQFH 980 (1132)
Q Consensus 912 ~~~~-------~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s 980 (1132)
..-. .-..-=..+..|.|.|+|.+.+.. |+.++-+...+..... ...+..... ..-..+.|.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~f~ 190 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLFFS 190 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEEEC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEEEC
Confidence 1111 111111357899999999888776 7765433332211000 011111111 123456799
Q ss_pred CCCcEEEEEeCCeE
Q 001176 981 NDQTHLLVVHESQI 994 (1132)
Q Consensus 981 ~dg~~l~~~~d~~v 994 (1132)
++|...++. ++.+
T Consensus 191 ~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ-GGKF 203 (236)
T ss_dssp TTSCEEEEE-TTEE
T ss_pred CCCcEEEEe-CCeE
Confidence 999888887 6643
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0094 Score=47.66 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc--HHHHHHHHhcccHHHHHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERY 56 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~ 56 (1132)
++|+.+-|++||..+||.+++.+|.+|.++..+ ...-..-.|+-+|..++++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHH
Confidence 568999999999999999999999999998875 2223455777888777654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.65 E-value=1 Score=48.10 Aligned_cols=234 Identities=11% Similarity=0.011 Sum_probs=109.8
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC----CC------
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS----KH------ 427 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~----dg------ 427 (1132)
+++.|+. .+.+||..+++.... + +......-...+...++..++.|+. ++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-------------~-----~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-------------A-----LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-------------E-----ECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred hhhcccc--ceEEECCCCCceecc-------------c-----CCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 5666663 488899887754220 0 0001111122334557888888873 12
Q ss_pred -eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-------CcEEEEECCCCeEEEEecCCCCCe--
Q 001176 428 -IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-------KMIKVWDVVAGRKQYTFEGHEAPV-- 497 (1132)
Q Consensus 428 -~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-------g~v~vwd~~~~~~~~~~~~h~~~v-- 497 (1132)
.+.+||..+++- .....+.........+.+ +++ +++.|+.+ ..+.++|+.+.+-... .....+.
T Consensus 78 ~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~ 151 (318)
T 2woz_A 78 SYFFQLDNVSSEW-VGLPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYG 151 (318)
T ss_dssp BEEEEEETTTTEE-EECSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEES
T ss_pred ccEEEEeCCCCcE-EECCCCCccccccceEEE--CCE--EEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccc
Confidence 167778776532 211111111111122222 454 56666643 3578889888765432 1111111
Q ss_pred EEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeE-EEEEEcCCCCEEEEEecCCCC-CCeEEEE
Q 001176 498 YSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWC-TMMAYSADGTRLFSCGTSKEG-ESHLVEW 569 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~-~~~i~~w 569 (1132)
.+++. . ++.+++.|+.+ ..+.+||+.+..-...-....... .+++. -+++.++.++.+.++ ...+.+|
T Consensus 152 ~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 152 HNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp CEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEE
Confidence 11111 1 33666776642 358888887654333211111111 12222 356677776643221 2457889
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeeEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------FQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 622 (1132)
|+.+.+....-.......-.+++ ..++..++.||.+ ..+.+||+.+.+-...
T Consensus 228 d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 228 DLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp ETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 98876543321111110111222 2245666666643 3467777777655443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.37 Score=52.67 Aligned_cols=234 Identities=9% Similarity=-0.020 Sum_probs=110.9
Q ss_pred CCCeEEEEeCC-CeEEEEEecC-CCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEcC-C---------CcEEEEECC
Q 001176 416 DGLMLGVAFSK-HIVHLYTYNP-TGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGD-D---------KMIKVWDVV 482 (1132)
Q Consensus 416 dg~~las~~~d-g~i~iwd~~~-~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~-d---------g~v~vwd~~ 482 (1132)
+++.++.|+.+ ..+.+||..+ .........+. .....-.++. -+++ +++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGN--LYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTE--EEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCE--EEEEcCCCCCCCccceeeccEEEEeCC
Confidence 67777777653 4688888864 22232222222 1111112222 2455 5666665 2 468899988
Q ss_pred CCeEEEEe--c-CCCCCeEEEEeeccCCccEEEEEecC---------------------------------------CeE
Q 001176 483 AGRKQYTF--E-GHEAPVYSVCPHHKESIQFIFSTAID---------------------------------------GKI 520 (1132)
Q Consensus 483 ~~~~~~~~--~-~h~~~v~~i~~~~~~~~~~l~s~s~d---------------------------------------g~i 520 (1132)
+.+-...- . .....-.++. . ++.+++.|+.+ ..+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--H--NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--E--TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCcEEECCCCCCcccccceEEE--E--CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 87643321 1 1111111222 2 33777888754 578
Q ss_pred EEEEcCCCCceEEecCCC-CeE-EEEEEcCCCCEEEEEecCCCC--CCeEEEEeC--CCCceee--eeccccCCceEEEE
Q 001176 521 KAWLYDYLGSRVDYDAPG-NWC-TMMAYSADGTRLFSCGTSKEG--ESHLVEWNE--SEGAIKR--TYSGFRKRSLGVVQ 592 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~-~~v-~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~--~~~~~~~--~~~~~~~~~v~~~~ 592 (1132)
.+||..+..-...-.... ... .+++. -+++.++.++.+..+ ...+..||+ .+.+... .+..... .....+
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~~~~ 248 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAGGFA 248 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBSCEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-cccceE
Confidence 888887755433222111 111 22222 255666666542211 345777876 4443222 1111111 111112
Q ss_pred EeCCCCEEEEEEcC----------------------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 593 FDTTRNRFLAAGDE----------------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 593 ~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
...++..++.||.+ ..+.+||+.+.+....-..... .....+...++++++.|+.+
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEEEEC
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEeeeC
Confidence 23355666666632 2578899887654443322222 22233344577888888864
Q ss_pred C------cEEEEEcCCc
Q 001176 651 N------GIKILANSDG 661 (1132)
Q Consensus 651 g------~i~iw~~~~~ 661 (1132)
+ .|.++++.++
T Consensus 327 ~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDN 343 (357)
T ss_dssp GGGCEEEEEEEEEC-CC
T ss_pred CCCCEeeeEEEEEEcCc
Confidence 3 3556677776
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.42 Score=51.79 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCceEEecCC----CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc------------eeeee
Q 001176 517 DGKIKAWLYDYLGSRVDYDAP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA------------IKRTY 580 (1132)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~------------~~~~~ 580 (1132)
++.||..++.....-..+... -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 356666666543333333332 23577899999999999986 5568888876321 11233
Q ss_pred ccc-----cCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCC--eeEEEEe-------CCCCCCCcceEEEcCCCCE
Q 001176 581 SGF-----RKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNM--NMLTTVD-------ADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 581 ~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~--~~~~~~~-------~~~~~~~v~~~~~s~~~~~ 643 (1132)
.-. ....|..+.|+|-+ ..|++-..|+.|++||+... ++. .+. .......|.+++|..++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 221 12369999999965 68999999999999999852 222 232 1122246788899888777
Q ss_pred EEEEe--CCCcEEEE
Q 001176 644 LAVTT--SDNGIKIL 656 (1132)
Q Consensus 644 l~~~~--~dg~i~iw 656 (1132)
|...+ ..|.|+..
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 77655 66776654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.26 E-value=3.8 Score=45.92 Aligned_cols=198 Identities=12% Similarity=0.121 Sum_probs=113.1
Q ss_pred eCCCEEEEee--CCeEEEEECCCCeEEEEeeCC-CCCeEEEEEe--CCCCCeEEEEeC-------CCcE---------EE
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFH--PQDNNIIAIGME-------DSSV---------QI 905 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--p~~~~~lasg~~-------dg~v---------~i 905 (1132)
.||++|...+ +..|-..+++..++-..+.-+ ...+..+.|- | +..+++.++. ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999987 577999999999887766644 3567888886 6 5666666652 2321 11
Q ss_pred E---EcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC---------------CcEEEEECCC-------cc--ccc-
Q 001176 906 Y---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---------------AQLCMWSIDK-------WE--KLK- 957 (1132)
Q Consensus 906 w---d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D---------------~~i~iwd~~~-------~~--~~~- 957 (1132)
| |..+.+...++.- .+..-.+...++|++.++.+-+ ..+.++++.. ++ .+.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 2222222222111 1222334557788887776532 1355666532 11 011
Q ss_pred --ceeeeCCC----CCC-----CCCCCceeEEECCCCcEEEEEe--CCeEEEEeCCC-------Cc---eeecCCCCCCC
Q 001176 958 --SRFIQAPA----GRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKL-------EC---SRSWSPKDALP 1014 (1132)
Q Consensus 958 --~~~~~~~~----~~~-----~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~~~-------~~---~~~~~~~~~h~ 1014 (1132)
...+.... +.. +.......+.++|||++++++. +.++.|+|.+. +. ...........
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 01111111 000 0113456889999999999964 78899999831 11 01111111114
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~ 1046 (1132)
..-...+|.++|.-..+-..|..|.-|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 55678899999955555668999999999764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.28 Score=47.90 Aligned_cols=183 Identities=8% Similarity=-0.013 Sum_probs=96.7
Q ss_pred CCCeEEEEeCCCcEEEEEccccee-----eeeeccc--cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc----c
Q 001176 890 DNNIIAIGMEDSSVQIYNVRVDEV-----KTKLKGH--QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----S 958 (1132)
Q Consensus 890 ~~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~ 958 (1132)
...+|.....| +|+.=....+.. ..+..++ =..++.++|+|+|.+.+. .+|.+.-.+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 665544443321 1111122 236789999999987666 67765555543311100 1
Q ss_pred eeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCC-----CCCCCCeEEEEEccCCCEEEEE
Q 001176 959 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPK-----DALPAPISSAIYSCDGLLVYAG 1032 (1132)
Q Consensus 959 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~-----~~h~~~i~~i~~s~dg~~las~ 1032 (1132)
..+... +- ..-..+.|.|+|.+.++ .||.|.-++. +... ..|... ..--..+..+.|.|+|.+.++.
T Consensus 80 t~IG~~-Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~-~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 80 KKIGNG-GW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDT-DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEEECS-CG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred cEeccc-cc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCC-CceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 111110 10 11368899999998888 7798887776 2111 122110 0002468999999999877766
Q ss_pred ecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCc
Q 001176 1033 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGA 1091 (1132)
Q Consensus 1033 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~ 1091 (1132)
|+.++-+...++....-+. ....+.+........+.|.| ++.+.++. ++.
T Consensus 153 --dg~lyr~~~P~~~~~~wl~----~~~~~g~~g~~~yr~l~f~~-~G~l~~v~--~g~ 202 (236)
T 1tl2_A 153 --GQQFYKALPPVSNQDNWLA----RATKIGQGGWDTFKFLFFSS-VGTLFGVQ--GGK 202 (236)
T ss_dssp --TTEEEEECCCSSTTCCHHH----HCEEEESSSGGGEEEEEECT-TSCEEEEE--TTE
T ss_pred --CCcEEecCCCCCCCccccc----ccceeccCCcceEEEEEECC-CCcEEEEe--CCe
Confidence 8886655444333221111 00111112223344566777 66555555 663
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.84 E-value=2.2 Score=46.28 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=49.5
Q ss_pred eCCCEEEEee--CCeEEEEECCC----CeEEEEee-CCCCCeEEEEEeCCCCCeEEEEeC-C---------CcEEEEEcc
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMT----FKVMTMFM-SPPPAATFLAFHPQDNNIIAIGME-D---------SSVQIYNVR 909 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~ 909 (1132)
-+++.++.|+ ...+.+||..+ .+.+..+. .....-.++.+ ++++++.|+. + ..+.+||..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3777777776 46799999864 22222222 11111222332 5678888776 2 468899988
Q ss_pred ccee--eeeeccccCCeeEEEEcCCCCEEEEEcCC
Q 001176 910 VDEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD 942 (1132)
Q Consensus 910 ~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~~~D 942 (1132)
+.+- +..+. ...+....+...++++++.||.+
T Consensus 95 ~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred CCcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 7642 22222 01111122222577888888865
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.81 E-value=4.7 Score=42.32 Aligned_cols=181 Identities=8% Similarity=0.039 Sum_probs=98.5
Q ss_pred EEEEccCCCeEEEEEcCC-------------CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 348 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+--++++|.++..+...+ ..|+..++..++... +... .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 445688998777666543 356666666554221 1111 123788
Q ss_pred CCCCeEEEEe--CCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 415 PDGLMLGVAF--SKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 415 pdg~~las~~--~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+++++|+-.. .++ .|..-++++.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999998776 334 45555555433 22 2333322 457888984 2334334678888898766654333
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+ ... ..+.|.+ .+|+-....+ .|..-+++..... .+.. ..+ ..++|++++|+.+... ....|..
T Consensus 184 ~~---~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCV 250 (302)
T ss_dssp CS---CEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECS--SSCEEEE
T ss_pred CC---Ccc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECC--CCcEEEE
Confidence 32 222 2344544 5665554433 4555555544432 2221 223 3478889998876421 2356777
Q ss_pred EeCCCC
Q 001176 569 WNESEG 574 (1132)
Q Consensus 569 wd~~~~ 574 (1132)
-++...
T Consensus 251 ~~~DG~ 256 (302)
T 3s25_A 251 VKNDGT 256 (302)
T ss_dssp EETTSC
T ss_pred EECCCC
Confidence 776643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.85 Score=51.39 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee--eeeecc------ccCCeeEEEEcCC----CCEEEEEcC----
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKG------HQNRITGLAFSPT----LNALVSSGA---- 941 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~l~s~~~---- 941 (1132)
-.....|+|.| +|+++++-...+.|++++..+++. +..+.. .......|+|+|| +.+.++-+.
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 888776544334788887655543 222221 2456779999995 444444332
Q ss_pred --------CCcEEEEECCCcc--ccc-ceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 942 --------DAQLCMWSIDKWE--KLK-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 942 --------D~~i~iwd~~~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
...|.-+++.... ... ...+...... .......++|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS--KDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC--SSCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC--CCCCCCeEeECCCCeEEEEE
Confidence 2346666554321 101 1122211110 01346899999999877773
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.94 Score=48.25 Aligned_cols=115 Identities=8% Similarity=-0.035 Sum_probs=68.4
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecc-cCCEEEEEE--ecCCCcEEEEEE-cCCCcEEEEECCCCeEEEEecC-
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAF--AHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG- 492 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~--s~d~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~- 492 (1132)
..+++++.||.|.-.|..+|+..-. +... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~---~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS---IEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE---ECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---ecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 3677888889888888888765442 2211 112211100 011222 33333 6899999999988866544321
Q ss_pred ---CCCCeEEEEeeccC-------CccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001176 493 ---HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537 (1132)
Q Consensus 493 ---h~~~v~~i~~~~~~-------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 537 (1132)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++.+..+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2222221 100111 3368899999999999999999998877654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.063 Score=57.33 Aligned_cols=201 Identities=7% Similarity=-0.000 Sum_probs=104.3
Q ss_pred CeEEEEeCCCcEEEEEcccceeeeeeccc-cCCeeEEEE--cC-CCCEEEEE-cCCCcEEEEECCCcccccceeeeCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--SP-TLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 966 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~ 966 (1132)
.++++++.||.|+-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|...-...+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888654 122222110 01 22333333 579999999988774322111111110
Q ss_pred CCCCCCCce---eEEE------CCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCC----CCeEEEEEc-----cCCC
Q 001176 967 RQSPLVGET---KVQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1027 (1132)
Q Consensus 967 ~~~~~~~v~---~~~~------s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~----~~i~~i~~s-----~dg~ 1027 (1132)
. .+.. .... +.+|..++.+.++.+...|. +++.+..+....... ....+.... ..+.
T Consensus 91 -~---SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 -T---SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp -T---CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred -c---cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 0011 0001 23444444478999999999 777777665432110 001111111 1245
Q ss_pred EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcE-EEEeCCCCCCeEEEEeCCCcEEEEecCCCcccc
Q 001176 1028 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL-VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~ 1104 (1132)
.|+.+..+..+.+.+ .+|+ +..+....+.+.. ....+. ....+. |+.+ +.++.||.|.-.|..+|+..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~----~~~~~~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV----LDVPLALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT----TTHHHHTTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc----ccccccccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677788888888777 5564 3222111111100 000000 000011 4555 457889999999999998888
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.22 E-value=6.4 Score=41.31 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=104.0
Q ss_pred EEEEeeCCCEEEEee--C-------------CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe--CC--Cc
Q 001176 842 CIALSKNDSYVMSAS--G-------------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--ED--SS 902 (1132)
Q Consensus 842 ~~~~s~dg~~la~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~--~d--g~ 902 (1132)
+--++++|.+|+... + ..|+..+++..+...... . .+.+|++ ++..|+... .+ ..
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~--~~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D--PCIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S--CEEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C--CccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999998876 2 257778877665322222 1 1236778 677777665 33 44
Q ss_pred EEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcC-CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC
Q 001176 903 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 903 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
|+.-++.. ....++..+.. .+|+++++.|.-.+. ..+|..-++.++... .+. .+. ....++|
T Consensus 131 Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l~--~~~-------~~~~~~P 193 (302)
T 3s25_A 131 LYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LFY--DCN-------CYKPVVL 193 (302)
T ss_dssp EEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EEE--CSC-------EEEEEEE
T ss_pred EEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EEe--CCC-------ccceeee
Confidence 55555543 33444444432 456788888886654 577888888775532 121 111 1234669
Q ss_pred CCcEEEEEe--C-CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCc
Q 001176 982 DQTHLLVVH--E-SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC--DGAIGVFDAETL 1046 (1132)
Q Consensus 982 dg~~l~~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~--dg~i~vwd~~~~ 1046 (1132)
++.+|+.+. + ..|..-++.+.....+. ...+ ..|+|++++|+-++. .+.|..-+++..
T Consensus 194 ~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 194 DDTNVYYMDVNRDNAIVHVNINNPNPVVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEECSSSCCCEECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCEEEEEEcCCCcEEEEEECCCCCeEEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 999998853 2 35767777655544443 2234 347889998876532 356777777643
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.31 E-value=6.9 Score=40.58 Aligned_cols=222 Identities=13% Similarity=0.096 Sum_probs=114.6
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
.|..++-... +.++. . ||.|..|-......+.. +. .....|..|+...+-.. +. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~------~~~~~i~~ia~G~~hs~-~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------PA------ATQSGVDAIAAGNYHSL-AL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------CG------GGGSCCCEEEECSSEEE-EE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------Cc------cCCCCEEEEEeCCCEEE-EE-E
Confidence 5666665544 33444 4 89999998765443321 00 01225666766544333 33 4
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 504 (1132)
||.|..|-.....++..... -...|..++...+- .+.-. ||.|+.|-....-.+..-......|..++...
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 89999998765443321111 13467777765443 23334 89999997554221111111234566666422
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
...++ -. ||.|..|-.......-.-......|..++...+...++ . ++.++.|-......+..-. ..
T Consensus 151 ---~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~-~~ 217 (282)
T 3qhy_B 151 ---YTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPT-EA 217 (282)
T ss_dssp ---SEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCG-GG
T ss_pred ---CEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCc-cc
Confidence 13333 33 79999997655433321111123566666544433332 2 5678888654322111111 11
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
...|..++..... .++-. ||.|+.|=...
T Consensus 218 ~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 LSGVSAIASGEWY--SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred CCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence 1246666665443 33333 99999996654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=6.3 Score=47.21 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=102.6
Q ss_pred eCCCEEEEee-C----CeEEEEECCCCeEEEEe-e-----CCC--CCeEEEEEeCCCCCeEEEEeCCC------cEEEEE
Q 001176 847 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-----SPP--PAATFLAFHPQDNNIIAIGMEDS------SVQIYN 907 (1132)
Q Consensus 847 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~-~-----~~~--~~i~~l~~sp~~~~~lasg~~dg------~v~iwd 907 (1132)
.++..++.|+ + ..+.+||..+.+-...- . .+. ..-.++.+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 35889998876433222 1 111 1233444433 567888887543 588899
Q ss_pred cccce--eeeeeccccCCeeEEEEcCCCCEEEEEcCCC--cEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-
Q 001176 908 VRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND- 982 (1132)
Q Consensus 908 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 982 (1132)
..+.+ .+..+......- +++...+++.++.||.++ .+.+||..+..= ..+........+......+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W---~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIF---KDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEE---EECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCce---EEccCCCCCCCcccceeEEEEeCCC
Confidence 88753 222222111111 222224788888888654 689999887541 111110000001122334565655
Q ss_pred CcEEEEE-e--C-----CeEEEEeCCCCc------eeecCCCCCCCCCeEEEEEccCCCEEEEEecC--------CcEEE
Q 001176 983 QTHLLVV-H--E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIGV 1040 (1132)
Q Consensus 983 g~~l~~~-~--d-----~~v~vwd~~~~~------~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d--------g~i~v 1040 (1132)
++.++.| . + ..+.+||+.... .............-.+++...++++++.|+.+ ..|.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 6666664 2 2 358899983333 11111100001111123333447888888743 45999
Q ss_pred EeCCCccee
Q 001176 1041 FDAETLRFR 1049 (1132)
Q Consensus 1041 wd~~~~~~~ 1049 (1132)
||..+++-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999987654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.72 E-value=15 Score=41.07 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=58.9
Q ss_pred CeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeee---------cccCCEEEEEEecC---CCcEEEEEEc-C
Q 001176 407 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP---NKQLCIVTCG-D 472 (1132)
Q Consensus 407 ~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d---~~~~~l~s~~-~ 472 (1132)
..+.|+|.|||+ .|+++...|.|++++.+..........+. +.......|+|+|+ ...++++-.. .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 56666789999999754321111111111 11456889999997 3332333221 1
Q ss_pred C----------CcEEEEECCC----------CeEEEEec--CCCCCeEEEEeeccCCccEEEEEecC
Q 001176 473 D----------KMIKVWDVVA----------GRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAID 517 (1132)
Q Consensus 473 d----------g~v~vwd~~~----------~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~d 517 (1132)
+ ..|.-|.+.. .+.+..+. .....-..|+|.|+ |.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD--G~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD--GFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT--SCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC--CcEEEEeCCC
Confidence 1 1344455532 22333332 22234678888774 4666666543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.61 E-value=14 Score=38.21 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=97.4
Q ss_pred CeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec
Q 001176 839 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 918 (1132)
.|..++...+- .++. .||.|..|-....-.+..-..-...|..|+... .+.+.-+ ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~h-s~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCE-EEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 45555543332 2233 377787777543211111111124677787764 3444455 9999999765432222222
Q ss_pred cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEe
Q 001176 919 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 998 (1132)
Q Consensus 919 ~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 998 (1132)
.....|..++...+.. ++ .. ||.|..|-......+.... . . ...+..++...+... +. .++.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~p~-~--~-----~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTVPA-E--A-----QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSCCG-G--G-----GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCCce-e--c-----CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2345677777654332 33 33 7999999876543322100 0 0 134566665554443 34 799999998
Q ss_pred C-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 999 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 999 ~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
. ....+..... ....|..++...+...+++ ||.|+.|-.....
T Consensus 205 ~n~~gqlg~p~~---~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~g 248 (282)
T 3qhy_B 205 DNRYKQTTVPTE---ALSGVSAIASGEWYSLALK---NGKVIAWGSSRTA 248 (282)
T ss_dssp CCTTSTTCCCGG---GGSSCCEEEECSSCEEEEE---TTEEEEESTTCCC
T ss_pred CCCCCCCCCCcc---cCCCceEEEcCCCEEEEEE---CCEEEEecCCCCc
Confidence 7 2222211111 1345777776555433333 9999999776543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.61 E-value=25 Score=39.31 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECC
Q 001176 587 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 587 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 615 (1132)
....++|.|++. .++++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456799999996 56667788999999754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=11 Score=44.99 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=100.9
Q ss_pred cCCCcEEEEEEcCC----CcEEEEECCCCeEEEEe-c-----CCCCC-eEEEEeeccCCccEEEEEecCC------eEEE
Q 001176 460 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-----GHEAP-VYSVCPHHKESIQFIFSTAIDG------KIKA 522 (1132)
Q Consensus 460 ~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~-~-----~h~~~-v~~i~~~~~~~~~~l~s~s~dg------~i~~ 522 (1132)
.++. +++.||.+ ..+.+||..+++....- . ..... -.+++.... ++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEE
Confidence 3455 56666643 46888898877644322 1 01111 112222210 336777776543 4777
Q ss_pred EEcCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-----cccCCceEEEEEeCC
Q 001176 523 WLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTT 596 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 596 (1132)
||..+..-...-..... .-.+++...+++.++.||.+..+ .+.+||..+.+....-. .... ...++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCC
Confidence 88776433222111111 11223333478888888764433 79999998876433221 1111 1233555655
Q ss_pred -CCEEEEEEc--C-----CeEEEEECCCCe------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC--------CCcEE
Q 001176 597 -RNRFLAAGD--E-----FQIKFWDMDNMN------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS--------DNGIK 654 (1132)
Q Consensus 597 -~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------dg~i~ 654 (1132)
+..++.||. + ..+.+||+.+.. .............-.+++...++.+++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556666664 2 468999998876 2222111100001123333333777777774 34688
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
+||..+.
T Consensus 630 ~yd~~t~ 636 (695)
T 2zwa_A 630 SLDPLSE 636 (695)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8888776
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=18 Score=38.96 Aligned_cols=172 Identities=10% Similarity=0.135 Sum_probs=93.5
Q ss_pred eEEEEECCCC--eEEEEeeCC------CCCeEEEEEe---CC--C-CCeEEEEe-CCCcEEEEEcccceeeeeec-----
Q 001176 859 KVSLFNMMTF--KVMTMFMSP------PPAATFLAFH---PQ--D-NNIIAIGM-EDSSVQIYNVRVDEVKTKLK----- 918 (1132)
Q Consensus 859 ~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~--~-~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 918 (1132)
+|.+||+.+. +.++++.-+ ......+++. |. . +.++..+. ..+.|.|||+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 777776532 3447788887 21 1 23433333 45689999999886554431
Q ss_pred ---------cc----cCCeeEEEEcCC----CCEEEEEcCCCcEEEEECCCcccccce---eeeCCCCCCCCCCCceeEE
Q 001176 919 ---------GH----QNRITGLAFSPT----LNALVSSGADAQLCMWSIDKWEKLKSR---FIQAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 919 ---------~h----~~~V~~l~~spd----g~~l~s~~~D~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~ 978 (1132)
|. ...|..|++||+ +++|.-..-.+ -++|.+.+.-..... .++. .|...+...-...+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEE
Confidence 10 136888999998 67776655444 345555432111100 0000 01110001223456
Q ss_pred EC-CCCcEEEE-EeCCeEEEEeCCC-C----ceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 979 FH-NDQTHLLV-VHESQISVYDSKL-E----CSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 979 ~s-~dg~~l~~-~~d~~v~vwd~~~-~----~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
+. .+|..+++ .....|..|+..+ . ....+.... .-.....+.+.++|.+.++.+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 75 56766666 4778999999855 2 222222111 234567777777776555543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.85 E-value=51 Score=39.16 Aligned_cols=250 Identities=8% Similarity=0.006 Sum_probs=124.2
Q ss_pred eeEEE-EccCCCeEEEEEcC----CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 346 VMSMD-FHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 346 V~~~~-~spdg~~lla~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
...+. ++||+++++++-|. -..++++|+.+++.+.. .|. ...+... + -......++|..++..+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~------~---~~~~~~~~~W~d~~~~~ 199 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK------L---LEGKFTYPTWINKDTII 199 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC------B---CCEETCCEEEEETTEEE
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc------c---cccccceeeEECCCEEE
Confidence 34455 88999876665443 34799999999986642 111 0000000 0 00011234676333333
Q ss_pred EEE----------eCCCeEEEEEecCCCceeeeeeeecccCCE-EEEEEecCCCc---EEEEEEcCC---CcEEEEECCC
Q 001176 421 GVA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQ---LCIVTCGDD---KMIKVWDVVA 483 (1132)
Q Consensus 421 as~----------~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v-~~v~~s~d~~~---~~l~s~~~d---g~v~vwd~~~ 483 (1132)
++. +....|+.|.+-+...-. ...+.+....+ .....+++++. ..+++.+.+ ..+.+.|...
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 321 123468888877643211 11233333332 34555677764 135554322 4556667553
Q ss_pred --CeEEEEecCCCCCeEEEEeeccCCccEEEEE----------ecCCeEEEEEcCCCC-------ceE-EecC-CCCeEE
Q 001176 484 --GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRV-DYDA-PGNWCT 542 (1132)
Q Consensus 484 --~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~i~~wd~~~~~-------~~~-~~~~-~~~~v~ 542 (1132)
++. ..+...... .+..+. ++.+++.. ...+.|...|+.... ... .+.. ....+.
T Consensus 279 ~~~~~-~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLKL-QKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCEE-EECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCcc-eEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 432 333222211 111122 22444422 246778889987631 222 2332 344778
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeee-eccccCCceEEEEEeCCCCEEEE-EE---cCCeEEEEECC
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFLA-AG---DEFQIKFWDMD 615 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~iwd~~ 615 (1132)
.+.+..+ ..+++... ++...+.++|+.+++ .... +.....+.+....+.+++..++. .+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 8888876 44444433 345678899887764 2233 22221225666666677654443 33 44678888887
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.98 E-value=63 Score=40.02 Aligned_cols=40 Identities=20% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
..+.+++..++..+|++-+.|+++|+|++.+++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4577788888999999999999999999999999877653
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.78 E-value=72 Score=37.88 Aligned_cols=243 Identities=9% Similarity=0.038 Sum_probs=118.9
Q ss_pred EEEE-EcCCCCeEEEE-e----CCCeEEEEEecCCCceeeeeeee-cccC------CEEEEEEecCCCcEEEEEE-----
Q 001176 409 NRCV-WGPDGLMLGVA-F----SKHIVHLYTYNPTGELRQHLEID-AHVG------GVNDIAFAHPNKQLCIVTC----- 470 (1132)
Q Consensus 409 ~~v~-~spdg~~las~-~----~dg~i~iwd~~~~~~~~~~~~l~-~h~~------~v~~v~~s~d~~~~~l~s~----- 470 (1132)
..+. ++||+++++.+ | .-..++++|+.+++.+... +. .-+. ....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~ 207 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKN 207 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCC
Confidence 3455 88999988765 2 2236999999998654311 11 0000 113458874444 34432
Q ss_pred -----cCCCcEEEEECCCCe--EEEEecCCCCCeE-EEEeeccCCcc---EEEEEecC---CeEEEEEcCCCCc-eEEec
Q 001176 471 -----GDDKMIKVWDVVAGR--KQYTFEGHEAPVY-SVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLGS-RVDYD 535 (1132)
Q Consensus 471 -----~~dg~v~vwd~~~~~--~~~~~~~h~~~v~-~i~~~~~~~~~---~l~s~s~d---g~i~~wd~~~~~~-~~~~~ 535 (1132)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.|...... ...+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 123578888876542 2233444333332 23333333222 34544422 3455555543222 23333
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecC------CCCCCeEEEEeCCCCc-------eeee-eccccCCceEEEEEeCCCCEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFL 601 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~ 601 (1132)
..... .+..+.++.+++....+ .-..+.|...|+.++. ..+. +.......+..+.+..+ ..++
T Consensus 288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 22221 12334555555533211 0136678899987642 1222 33333335777888865 4666
Q ss_pred EEEcCCe--EEEEECCCCe-eEEE-EeCCCCCCCcceEEEcCCCCEE-EEEeC---CCcEEEEEcC
Q 001176 602 AAGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGSLL-AVTTS---DNGIKILANS 659 (1132)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l-~~~~~---dg~i~iw~~~ 659 (1132)
+...++. ++++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..+|+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666664 6677776664 2223 333221 245555566665443 33332 2456666654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=82.66 E-value=59 Score=35.33 Aligned_cols=261 Identities=12% Similarity=0.000 Sum_probs=118.3
Q ss_pred CCCeeEEEEee--CCCEEEEeeCC----eEEEEECCCCeEEEEee------C--------CCCCeEEEEEeCCC-CCeEE
Q 001176 837 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFM------S--------PPPAATFLAFHPQD-NNIIA 895 (1132)
Q Consensus 837 ~~~v~~~~~s~--dg~~la~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~sp~~-~~~la 895 (1132)
...|.+++++| ++.+.+.+..| .|...+ +.++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 56666655554 343332 2232211111 1 11257789998733 44555
Q ss_pred EEeCCCcEEEEEcc--cceeeeeecc----------------ccCCeeEEEEcCC-CCEEEEEcCCCcEEEEECCCcccc
Q 001176 896 IGMEDSSVQIYNVR--VDEVKTKLKG----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKL 956 (1132)
Q Consensus 896 sg~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~V~~l~~spd-g~~l~s~~~D~~i~iwd~~~~~~~ 956 (1132)
.++..+.|...+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD- 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS-
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC-
Confidence 56556655554311 1122211110 1235788999873 33444443344344332 22211
Q ss_pred cceeeeC-CCC-CCC-----CCCCceeEEECCC-CcEEEEEeCCeEEEEeCCCCceeecCCCCCC--CCCeEEEEEcc-C
Q 001176 957 KSRFIQA-PAG-RQS-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSC-D 1025 (1132)
Q Consensus 957 ~~~~~~~-~~~-~~~-----~~~~v~~~~~s~d-g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h--~~~i~~i~~s~-d 1025 (1132)
...+.. ... ..+ ....+..+++.|+ ...|.++..+.|...+-.++....+...... ...+.+++++| +
T Consensus 211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCC
Confidence 001110 000 000 0124778899886 3556666566665555444433333211000 13467788876 3
Q ss_pred CCEEEEEec-----------CCcEEEEeCCC-cceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEE
Q 001176 1026 GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1093 (1132)
Q Consensus 1026 g~~las~~~-----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~ 1093 (1132)
...|.++.. ++...+|.... |+.-..+. ..+|....- .......++++|.++..|+.++.++.|
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~-~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAW-LTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCC-CCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCcccc-ceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 334444432 33345554443 33222221 111210000 001113577777666667777666654
Q ss_pred EEecCCCcccccC
Q 001176 1094 VVEPSDAELKWGG 1106 (1132)
Q Consensus 1094 vW~~~~~~~~~~~ 1106 (1132)
|.-..+...|..
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 555555555654
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.82 E-value=68 Score=34.81 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=126.9
Q ss_pred cccccccccccCceeeeecCCCCCCCc--ceEEecCC---cccccceEEEEEecCCceEEeecccceeEEEeeccccCCC
Q 001176 731 VDVKPRVAEDVDKIKSWRIPDISDPSQ--IKALRLPD---SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 805 (1132)
Q Consensus 731 ~~~~~~~~~~~~~v~~w~~~~~~~~~~--~~~~~~~~---~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 805 (1132)
....+++...+|++..|=.+..-+-.. ......|. ......+..++ -.....++...+|.|..|=.......-
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLI--GGEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEE--EETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEE--eCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 344556667778888887665322110 00111111 00112344443 334556667778888888543322111
Q ss_pred CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCC-----------eEEEE
Q 001176 806 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-----------KVMTM 873 (1132)
Q Consensus 806 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~-----------~~~~~ 873 (1132)
.+.......+ ..+.. + . ...+..++++......+.-. +|.|..|-.... .....
T Consensus 87 ~g~~~~~~~p--------~~v~~-~----~-~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 152 (389)
T 3kci_A 87 IGGTESVSTP--------TLLES-I----Q-HVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRV 152 (389)
T ss_dssp SSSSCCEEEE--------EECGG-G----T-TSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred CCCcCCccCC--------EEccc-c----c-CCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeE
Confidence 1110000000 00000 0 0 22344455554444443333 788888854321 11111
Q ss_pred eeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-e----------eeeeecc-ccCCeeEEEEcCCCCEEEEEc
Q 001176 874 FMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKG-HQNRITGLAFSPTLNALVSSG 940 (1132)
Q Consensus 874 ~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~-h~~~V~~l~~spdg~~l~s~~ 940 (1132)
+.. ....|..|+. +....+....||.|+.|-.... + ....+.. ....|..++......+.+...
T Consensus 153 v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~ 229 (389)
T 3kci_A 153 IESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT 229 (389)
T ss_dssp CGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE
T ss_pred ecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc
Confidence 111 1235666665 4456666788999999975431 1 0111111 223566777654345666677
Q ss_pred CCCcEEEEECCCccccc---------ceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC-CCce------
Q 001176 941 ADAQLCMWSIDKWEKLK---------SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS------ 1004 (1132)
Q Consensus 941 ~D~~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~-~~~~------ 1004 (1132)
.|+.|..|-......+. ...+..+.+ ..+..++... ...++...++.|..|-.. ...+
T Consensus 230 ~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-----~~v~~v~~G~-~hs~alt~~G~v~~wG~n~~GqLG~g~~~ 303 (389)
T 3kci_A 230 DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-----LGVVKVECGS-QFSVALTKSGAVYTWGKGDYHRLGHGSDD 303 (389)
T ss_dssp TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-----SCEEEEEEET-TEEEEEETTSCEEEEECCGGGTTCSSSCC
T ss_pred cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-----CcEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCCc
Confidence 89999999765422211 011111111 1233333222 223344678889999761 1111
Q ss_pred -----eecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001176 1005 -----RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 1005 -----~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~ 1046 (1132)
..+.... ...|..|+... .+.++...||.|+.|-....
T Consensus 304 ~~~~P~~v~~l~--~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 304 HVRRPRQVQGLQ--GKKVIAIATGS--LHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp CEEEEEECGGGT--TCCEEEEEECS--SEEEEEETTCCEEEEECCTT
T ss_pred cccCCeEeccCC--CCCEEEEEecc--CeEEEECCCCCEEEeeCCCC
Confidence 0111001 23566665533 34455578999999987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1132 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1jofa_ | 365 | b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.9 bits (198), Expect = 8e-17
Identities = 44/339 (12%), Positives = 100/339 (29%), Gaps = 32/339 (9%)
Query: 299 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQT 357
+++ L +IR + T N+ + RTL + + +M + +
Sbjct: 10 EAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL 69
Query: 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417
L+ + G + +W+ + ++ P + + + + + ++
Sbjct: 70 -LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI---------- 467
V S+ + Y +I G + Q
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 468 -----------VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 516
V+ D K+WDV G + TF GHE+ + ++C + +
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG--NAFATGSD 246
Query: 517 DGKIKAWLYDYLGSRVDYDAPGNWC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574
D + + + Y C T +++S G L + + + W+ +
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKA 302
Query: 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 613
+G R + + +K W+
Sbjct: 303 DRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.9 bits (190), Expect = 9e-16
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 789 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848
+ V L T SG A+ +LW G E I N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMC----RQTFTGHESDINAICFFPN 237
Query: 849 DSYVMSASGG---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 905
+ + S ++ + + T ++F ++ G +D + +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 906 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
++ + L GH NR++ L + A+ + D+ L +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 7e-12
Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 15/184 (8%)
Query: 863 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922
+ T + D + G D+S ++++VR + GH++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 982
I + F P NA + DA ++ + ++L + G T V F
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC------GITSVSFSKS 281
Query: 983 QTHLLVVHE-SQISVYDSKLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1038
LL ++ +V+D + L +S + DG+ V G D +
Sbjct: 282 GRLLLAGYDDFNCNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 1039 GVFD 1042
+++
Sbjct: 337 KIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 43/283 (15%)
Query: 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486
I + ++R + H+ + + + + +L +V+ D + +WD K
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRL-LVSASQDGKLIIWDSYTTNK 89
Query: 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 546
+ + V + + I RV + G+ +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 547 SADGTRLFSCGT---------------------------------------SKEGESHLV 567
+ S ++
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627
W+ EG ++T++G + + + F N F D+ + +D+ L T D
Sbjct: 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
+ + F+K G LL D + +L G
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 886 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 945
D + I V +R + L+GH +I + + LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 946 CMWSIDKWEKLKS 958
+W K+ +
Sbjct: 80 IIWDSYTTNKVHA 92
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.6 bits (192), Expect = 4e-16
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 8/192 (4%)
Query: 333 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISA 391
T V+T + M Q T++ +N + +W V ++E A + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 392 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 451
+ P + A G G L + ++ + TG L H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV--GHDN 248
Query: 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511
V + F K I++C DDK ++VWD R T HE V S+ H ++
Sbjct: 249 WVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYV 304
Query: 512 FSTAIDGKIKAW 523
+ ++D +K W
Sbjct: 305 VTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%)
Query: 433 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492
+ P + L H V + F HP + +V+ +D IKVWD G + T +G
Sbjct: 2 EWIPRPPEKYALS--GHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKG 57
Query: 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552
H V + H + S D IK W + + + ++ +G
Sbjct: 58 HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 612
+ S K + V+ +T++G R+ +V+ + + ++ ++ W
Sbjct: 116 IVSASRDKTIKMWEVQTGY----CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVW 170
Query: 613 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661
+ + + + + E S +++ + + G
Sbjct: 171 VVATKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 55/328 (16%), Positives = 104/328 (31%), Gaps = 46/328 (14%)
Query: 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403
S V + FHP +++ + I +W+ + + L
Sbjct: 18 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKG 57
Query: 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 463
SV + G + + + + + + PN
Sbjct: 58 HTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 464 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
IV+ DK IK+W+V G TF GH V V P+ I S + D ++ W
Sbjct: 114 D-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVW 170
Query: 524 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT----------------SKEGESHLV 567
+ + + + ++++ + + S + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627
W+ S G T G GV F + L+ D+ ++ WD N + T++A
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 628 GLPASPRLRFNKEGSLLAVTTSDNGIKI 655
S L F+K + + D +K+
Sbjct: 290 HFVTS--LDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 3e-12
Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 842 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 900
K +++S S + ++++ T + + + FH I +D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADD 268
Query: 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
++++++ + L H++ +T L F T +V+ D + +W
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 24/178 (13%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 842 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----------- 889
+ +++ + + S S V ++ + T + +++ P+
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207
Query: 890 --------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 941
+ G D ++++++V L GH N + G+ F ++S
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 942 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 998
D L +W +K+ + A T + FH +++ + + V++
Sbjct: 268 DKTLRVWDYKNKRCMKT--LNAHEHFV------TSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 312 SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW 371
D A ++ V TK L + +V+ + + + G +
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 372 EVGSRERL----AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427
L K K+WD+S M L L V ++ G +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVST-GMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 428 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480
+ ++ Y + ++AH V + F H +VT D+ +KVW+
Sbjct: 270 TLRVWDY-KNKRCMK--TLNAHEHFVTSLDF-HKTAPY-VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 31/290 (10%), Positives = 76/290 (26%), Gaps = 27/290 (9%)
Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 875
++W +G K +S I+ + + S S M
Sbjct: 42 KVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97
Query: 876 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 935
+ + I D +++++ V+ GH+ + + +
Sbjct: 98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 157
Query: 936 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 995
+ S D + +W + E E+ ++ T +
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217
Query: 996 VYDS--------KLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044
+ K+ + L + ++ G + + D + V+D +
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 1045 TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1094
R ++++ + H + + G D V V
Sbjct: 278 NKR-----------CMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 958
K L GH++ +T + F P + +VS+ DA + +W + + ++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 882 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 941
T + FHP +++ ED+++++++ + + LKGH + + ++F +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK------- 72
Query: 942 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1001
L S D KL +V ++ ++
Sbjct: 73 --LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 1002 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052
+ + + DG L+ + D + V+ T + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 6e-13
Identities = 41/349 (11%), Positives = 106/349 (30%), Gaps = 28/349 (8%)
Query: 325 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 384
N ++ + ++L+ S V + F + L G N ++ V S L +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRV-SDGSLVARLS 100
Query: 385 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 444
+ L + + + + + PDG L ++ ++ +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL- 159
Query: 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504
+ + + +V+ D+ +++WD+ G+ T +
Sbjct: 160 ----QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215
Query: 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-------NWCTMMAYSADGTRLFSCG 557
++I + ++D ++ W + D+ + + ++ DG + S
Sbjct: 216 DG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 558 TSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 610
+ + ++ + K + V L+ + +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 611 FWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTSDNGIKI 655
FWD + N L + + + E ++ A + D +I
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.7 bits (166), Expect = 1e-12
Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 27/215 (12%)
Query: 322 HTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 381
V D T TL+ V ++ P + G+ + +W+ + +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 382 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 441
+ + V V+ DG + V L+
Sbjct: 243 LDSENESGTGHKDS------------VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 442 QHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492
++ V +A ++ I++ D+ + WD +G +G
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 493 HEAPVYSVCPHHKESI----QFIFSTAIDGKIKAW 523
H V SV + S+ + + D K + W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 9e-11
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 842 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAA------------TFLAFHP 888
+ +++ V+S S V L+N+ + +P +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA------FSPTLNALVSSGAD 942
++ I G +D V ++ + L+GH+N + +A P N + D
Sbjct: 319 -NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 943 AQLCMWSIDK 952
+ +W K
Sbjct: 378 CKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 26/264 (9%)
Query: 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLF 863
+P GK A A + + E+ + + ++S SG +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 864 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTK 916
+ ++ +S T +A P D IA G D +V++++ R+D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE-- 974
GH++ + + F+ ++VS D + +W++ + +G
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 975 --TKVQFHNDQTHLLVVHE-SQISVYDSKLECSRSWSPKDALP---------APISSAIY 1022
V + ++L + + +D +S +P L A + +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWD-----KKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 1023 SCDGLLVYAGFCDGAIGVFDAETL 1046
+ + G D ++ + +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 2e-08
Identities = 38/322 (11%), Positives = 78/322 (24%), Gaps = 22/322 (6%)
Query: 165 SFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGP 224
K++++ + + SL + +P+ + S + P G
Sbjct: 81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140
Query: 225 IPKAGQFPPIGAHGPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHP 284
+ + I V+ + PS +G G
Sbjct: 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 200
Query: 285 RTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGS 344
+ S I G D V + + + L
Sbjct: 201 LSIEDGVTTVAVSPGDGK---YIAAGSLDRA--VRVWDSETGFLVERLDSENESGTGHKD 255
Query: 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 404
+V S+ F Q+ ++ G+ + LW + + + +
Sbjct: 256 SVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD----- 309
Query: 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA----- 459
V + + V + +G L+ H V +A A
Sbjct: 310 --FVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ--GHRNSVISVAVANGSSL 364
Query: 460 HPNKQLCIVTCGDDKMIKVWDV 481
P + T D ++W
Sbjct: 365 GPEYNV-FATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 38/356 (10%), Positives = 83/356 (23%), Gaps = 46/356 (12%)
Query: 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400
++ +D Q L L+ + D+ L +L
Sbjct: 13 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVE-----LHKSL 59
Query: 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIV--HLYTYNPTGELRQH------------LEI 446
+ + V + DG L +K + + L
Sbjct: 60 DHTSV--VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 506
+ + + F P+ + D + ++ +
Sbjct: 118 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFP 173
Query: 507 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566
S + S + D ++ W + T+ DG + + +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 567 VEWNESEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624
E + V V F ++ + +K W++ N N +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 625 ADGGLPASP----------RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
+ + + + D G+ G L ML+G
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 348
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 3e-04
Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 29/325 (8%)
Query: 799 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 858
Q + L+ P + ++++S C+ S + Y+ +
Sbjct: 26 QSVPDALKKQTNDYYI--LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83
Query: 859 KVSLFNMMTFKVMTMFMSPPPAA------------------TFLAFHPQDNNIIAIGMED 900
++ + ++ A + F P D +A G ED
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAED 142
Query: 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 960
++I+++ ++ L+GH+ I L + P+ + LVS D + +W + + +
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202
Query: 961 IQAPAGRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPIS 1018
I+ SP G+ D+ + E+ V E KD +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD----SVY 258
Query: 1019 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFR-CRIGPSAYIPTYAVSSNTAHPLVIAPHP 1077
S +++ DG V +G D ++ +++ + + P++ + L +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1078 SEPNQIALGMSDGAVHVVEPSDAEL 1102
++ I G D V +
Sbjct: 319 ND-EYILSGSKDRGVLFWDKKSGNP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 4e-12
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 882 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSS 939
+ A++ D IAI + V IY ++ +LK H ++TG+ ++P N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 940 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 999
G D +W++ + I + + + I ++
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQ 126
Query: 1000 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1057
+ + K + + + S + + +L+ AG CD +F A R P+ +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.7 bits (153), Expect = 4e-11
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 23/278 (8%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
++ W D + + + H VH+Y + + Q E+ H G V + +A + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
VTCG D+ VW + + T + C + + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 527 YLGSRV--------------DYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNE 571
D N + A S D R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 572 SEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 629
S+ V V F +R + + D D + T+ ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 630 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 667
+ F E SL+A D + L
Sbjct: 245 -PLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSF 280
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (91), Expect = 0.001
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901
+ S V + LF + F + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDK 306
Query: 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP----TLNALVSSGADAQLCMWSIDKWEKL 956
H+N ++ ++ + ++G D + +W + E
Sbjct: 307 KASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 15/152 (9%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Query: 920 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979
I+ A++ + + ++ ++ + ++ ++ G+ T V +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ------VTGVDW 59
Query: 980 HNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1038
D ++ + V+ K + + ++ + G I
Sbjct: 60 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 1039 GVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1070
+ E V S HP
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 447 DAHVGGVNDIAFAHPNKQLC--IVTCGDDKMIKVWDV 481
H V+ I+ K C T G D + +WDV
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 20/219 (9%)
Query: 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496
GEL+ + H V I IV+ DD +KVW V G+ T GH
Sbjct: 3 RGELKSPKVLKGHDDHV--ITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556
V+S D I + D + + T+ +++ +
Sbjct: 60 VWSSQMR-------------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106
Query: 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616
S + + V R ++ +F +K WD +
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166
Query: 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655
L T+ + +G + + D I++
Sbjct: 167 ETCLHTLQGH----TNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 9e-07
Identities = 48/393 (12%), Positives = 112/393 (28%), Gaps = 62/393 (15%)
Query: 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 628
W E + G + +QF NR ++ D+ +K W L T+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVG--- 55
Query: 629 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 688
G + + DN I + +++ G + + + L
Sbjct: 56 ----------HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105
Query: 689 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 748
VS + TL D +G + R V R +
Sbjct: 106 H-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160
Query: 749 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 808
+ D + + L+ G+ +++ + + ++W +
Sbjct: 161 VWDPETETCLHTLQ------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE--------- 205
Query: 809 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 868
N I+ + + + L ++ V + V ++++ T
Sbjct: 206 -----------------TGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTG 247
Query: 869 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GHQNR 923
+ + P + + + N + +D +V++++++ E L G
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 924 ITGLAFSPTLNALVSSGAD----AQLCMWSIDK 952
+ + S T + +L + D
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 15/157 (9%)
Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
+V+ D I+VWDV G +T GH++ + + S D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIK 245
Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 586
P + + S +G L W+ G R
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 587 SLGV----VQFDTTRNRFLAAGD----EFQIKFWDMD 615
G ++ T+ E ++ D D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 14/188 (7%)
Query: 852 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911
V A V +++ T + L F D + G D+S+++++V
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG 207
Query: 912 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 971
L GHQ+ +G+ + LVS AD+ + +W I + L++
Sbjct: 208 NCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKH------ 259
Query: 972 VGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKDALP--APISSAIYSCDGLL 1028
N + + + ++D E R+ ++ + S L+
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319
Query: 1029 VYAGFCDG 1036
G +G
Sbjct: 320 CAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 8e-05
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
+ DG+ + + ++ + H + + N
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMEL-KDN---I 229
Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--- 523
+V+ D +K+WD+ G+ T +G +V F+ +++ DG +K W
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLK 288
Query: 524 ----LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570
+ + + ++ G + S + E+ L+ +
Sbjct: 289 TGEFIRNLV--TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 25/210 (11%), Positives = 60/210 (28%), Gaps = 30/210 (14%)
Query: 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944
N I G +D+++++++ + L GH + +
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII---------- 70
Query: 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS 1004
S D+ K+ + + +++ + ++ + V+D E
Sbjct: 71 -ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI--ETG 127
Query: 1005 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1064
+ A + Y ++ A D + V+D ET +
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGA--YDFMVKVWDPETETCLHTL------------ 173
Query: 1065 SNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1094
H + + + G D ++ V
Sbjct: 174 --QGHTNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 8e-10
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKES 507
H ++ I + + I+ G + ++++ +G+ ++SV K
Sbjct: 280 HHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 508 IQFIFSTAIDGKIKAWLYDY 527
+ + DG+ + D+
Sbjct: 336 -TLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 7e-08
Identities = 46/376 (12%), Positives = 105/376 (27%), Gaps = 28/376 (7%)
Query: 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636
+ T G + +QF+ N + D+ I+ +D N L +
Sbjct: 5 RTTLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSG----------- 51
Query: 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 696
+G + A+ + GI + ++D + ++ +
Sbjct: 52 --HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 109
Query: 697 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756
V+ + TL P S+ G LV P + + + S
Sbjct: 110 YIVTGSRDNTLHVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
Query: 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 816
+ + S + +V + L +L+ ++ ++ +R S +
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228
Query: 817 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 876
+ + +S + F
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI---------RGWDANDYSRKFSY 279
Query: 877 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNA 935
+ + +NI+ G ++ IYN+R + V + ++I + F
Sbjct: 280 HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TL 337
Query: 936 LVSSGADAQLCMWSID 951
+ + D Q + +D
Sbjct: 338 VAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 1e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
Q + H+ V N ++T DDKMI+V+D + + GH+ V+++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561
H + S + D ++ W ++ + + + S++
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 562 GESHLVEWNESEGAIKRTYSGFRKRSL 588
H+ W + + + L
Sbjct: 118 NTLHV--WKLPKESSVPDHGEEHDYPL 142
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
++N + G +D +++Y+ + +L GH + L ++ LVS D + +W
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 950 IDKW 953
I K
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
SV C+ + + ++ +Y + L H GGV + +AH
Sbjct: 14 SVITCLQ-FEDNYVITGADDKMIRVYDSI-NKKFLLQLS--GHDGGVWALKYAHGG---I 66
Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
+V+ D+ ++VWD+ G + FEGH + V + ++I++I + + D + W
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 527 YLGSRVDYDAPGNWCTMM 544
S D+ ++ +
Sbjct: 127 KESSVPDHGEEHDYPLVF 144
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.002
Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 18/190 (9%)
Query: 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 973
+T L+GH + N +++ D + ++ + L + G G
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDG------G 55
Query: 974 ETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033
+++ + + + + V+D K C + + + G
Sbjct: 56 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115
Query: 1034 CDGAIGVFDAETLRFRCRIGPSAYIP---------TYAVSSNTAHPLVIAPHPSEPNQIA 1084
D + V+ G P Y V H + N +
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175
Query: 1085 LGMSDGAVHV 1094
G D + V
Sbjct: 176 SGSYDNTLIV 185
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 16/216 (7%)
Query: 441 RQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499
R L+ I + + Q IV+ D IK+WD + GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559
+ + I + + +A + ++ S
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV- 119
Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
W+ + V D ++A + IK W+
Sbjct: 120 ---------WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655
+ T++ L+ +SDN I++
Sbjct: 171 VRTLNGHK----RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 382 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 441
+ KVW+ S + ++ S + + L+ LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212
Query: 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---------TFEG 492
G ++ IV+ D IKVWD+VA T
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
H V+ + I S++ D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 858 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK- 916
+ L+++ + + + DN I G D ++++++
Sbjct: 198 NTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 917 --------LKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
L H R+ L F +VSS D + +W
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 26/205 (12%)
Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
D+ I G+ D++++I++ E K L GH + L + + SS + ++ +
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83
Query: 950 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1009
+ + N+ + + I+V+D +
Sbjct: 84 TGEMLNTLIHHCE-----------AVLHLRFNNGMMVTCSKDRSIAVWDMA-SPTDITLR 131
Query: 1010 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069
+ + + + D + + D I V++ T F V + H
Sbjct: 132 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--------------VRTLNGH 177
Query: 1070 PLVIAPHPSEPNQIALGMSDGAVHV 1094
IA + G SD + +
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.002
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 385 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 444
++WDI + L D + + ++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 445 E------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480
+ H G V + F + IV+ D I +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 7e-09
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 438 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAP 496
G + Q H + ++ + + + + + I WD+ G F + H
Sbjct: 2 GSIDQVRY--GHNKAITALSS-SADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATM 57
Query: 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 548
+ + +F+ + D +K G + A
Sbjct: 58 ITGIKTTS---KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 912 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 958
+ GH IT L+ S L S+ A+ + W I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 26/323 (8%), Positives = 73/323 (22%), Gaps = 33/323 (10%)
Query: 335 TVVRTLNQG--SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 392
++ + G + ++ +T L G I+ W++ +
Sbjct: 3 SIDQVR-YGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNR------------ 48
Query: 393 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 452
+ A + G + V++ H+ G + A+
Sbjct: 49 ------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKV---VPAGGSGVDSSKAVANKLS 99
Query: 453 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 512
+ A V + + + + ++ +
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQ 156
Query: 513 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572
+ + + + + A F T + + +
Sbjct: 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-----GAFLVATDQSRKVIPYSVANN 211
Query: 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632
F + V + R + + W+M+ + + +S
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271
Query: 633 PRLRFNKEGSLLAVTTSDNGIKI 655
+ + D+ IK
Sbjct: 272 VNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468
W PD + L + V ++ N + AH + + V
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLNETTI--V 284
Query: 469 TCGDDKMIKVWDV 481
+ G D IK W+V
Sbjct: 285 SAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 17/117 (14%), Positives = 25/117 (21%), Gaps = 5/117 (4%)
Query: 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468
V + VA + + H P+
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA- 240
Query: 469 TCGDDKMIKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
T D + VW++ H + E I S D IK W
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 8e-04
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 860 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKL 917
T + A DN +A G D+SV ++N+ D
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 918 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
H +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 6/109 (5%), Positives = 23/109 (21%), Gaps = 2/109 (1%)
Query: 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901
+ ++ + L F +D+
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDN 287
Query: 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
+ + + + + S +V+ D + ++ +
Sbjct: 288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 35/321 (10%), Positives = 81/321 (25%), Gaps = 35/321 (10%)
Query: 337 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-- 394
+ TLN G V ++ + + G + + KVWDIS
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVY-------------TGGKGCV-----KVWDISHPGNKS 86
Query: 395 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 454
P+ + + C PDG L V + ++ + +
Sbjct: 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146
Query: 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 514
+ G+ + + + + + C +++
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLH-----NQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574
+D +++W +D + Y G L S E V +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 634
++F F++ G + + W + + +
Sbjct: 261 LHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS--- 311
Query: 635 LRFNKEGSLLAVTTSDNGIKI 655
+ + + + D +
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
+ + P G L V V + N ++ H V + FA+ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
V+ G D ++ W G + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 8e-06
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 470
+ G ++++ + P G + V + + IVT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT-PYGASIFQSK---ESSSVLSCDI-SVDDKY-IVTG 324
Query: 471 GDDKMIKVWDVV 482
DK V++V+
Sbjct: 325 SGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 11/137 (8%)
Query: 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474
DG M V F + L H V + ++P + + T G
Sbjct: 19 ADGQMQPVPFPPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHV--YTGGKGC 73
Query: 475 MIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 529
+KVWD+ Q + + S + A I
Sbjct: 74 -VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 530 SRVDYDAPGNWCTMMAY 546
+ + + C +A
Sbjct: 133 IKAELTSSAPACYALAI 149
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901
CI +S + + + + + L + P + +S
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMES 245
Query: 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 961
S K +L H++ + L F+ VS+G D L W +
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--- 302
Query: 962 QAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 998
+ S + D +++ + + +VY+
Sbjct: 303 ---SKESSSV---LSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 9/244 (3%)
Query: 442 QHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPV 497
Q ++I A ++DI P+K L ++ D + V+ K ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKI-IPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557
+Q T +K L + + N +L +
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 558 TSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616
E + + K + DT +R + + Q++++ +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 617 MNMLTTVDADGGLPASPRLR--FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 674
+ GL R KE A ++ D + + D + A
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 675 KNRC 678
+R
Sbjct: 240 CHRL 243
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 26/325 (8%), Positives = 75/325 (23%), Gaps = 35/325 (10%)
Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405
+ + P + +L + S + V+ + +
Sbjct: 14 ISDIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYK 56
Query: 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
+ C + + + + L Q L + G+ I +K +
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 466 CIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524
G ++I + G + V + + + + +++ +
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 525 YDYLGSRVDYDAPGNWCTMM----AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580
+ + + + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 581 SGFRKRSLGV----------VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630
+ R ++F AG + I W++ +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFN 293
Query: 631 ASPRLRFNKEGSLLAVTTSDNGIKI 655
++ ++L + TSD+ K
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 9e-06
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL------------RQHLEIDAHVGGVND 455
+ + + + V + ++ G+ R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFST 514
I F+ +K L G D +I W++ +K F +E V + +
Sbjct: 257 IEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 515 AIDGKIKAW 523
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG 940
+ P +++ I D S+ +Y + L +++ + F + + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 941 ADAQLCMWSIDKW 953
+
Sbjct: 76 TVQGEILKVDLIG 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 23/265 (8%), Positives = 59/265 (22%), Gaps = 16/265 (6%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
++ P +L + + +Y ++ + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
V +++KV + + Q + + S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT---YSGF 583
G + N + S S + + SG
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 584 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR--------- 634
+ + V + + + + ++ D+
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 635 ----LRFNKEGSLLAVTTSDNGIKI 655
+ F+ L SD I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 976
+ ++ I+ + P+ + L+ + D L ++ D K + + PL
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--LLQSLRYKHPL---LC 61
Query: 977 VQFHNDQTHLLV 988
F ++ +
Sbjct: 62 CNFIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.002
Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 33/179 (18%)
Query: 862 LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------------- 908
L +A P++ A D V +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 909 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 966
R + K + + FSP L ++G+D + W++ +K+K+ F +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN-FAKFNED 295
Query: 967 RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD 1025
+ V+ L + + D+ ++ + D +S+IY
Sbjct: 296 --------SVVKIACSDNILCLA-----TSDDT----FKTNAAIDQTIELNASSIYIIF 337
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 863 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQ 921
+S PA + +++A G D+++ IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 922 NRITGLAFSPTLNALVSSGADAQLCMWSI 950
+ + L + + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 470
+ ++ + +Y+ ++ + L AH GVN++ + P+ +V+
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 471 GDDKMIKVWDVV 482
G D IK W+VV
Sbjct: 276 GADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 466 CIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
+ T D I ++ V K H+ V ++ + + S+ D IK W
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST---LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
I H G+ + +P +++ D I W + + H + S+
Sbjct: 9 ISGHNKGITALTV-NP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 506 ESIQFIFSTAIDGKIKAWLYDY 527
+ I +++
Sbjct: 58 QEYSSISWDDTLKVNGITKHEF 79
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 963
DEV + GH IT L +P L+S D ++ WS + S I +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS 51
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 43/331 (12%), Positives = 84/331 (25%), Gaps = 44/331 (13%)
Query: 278 VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVV 337
V +K + ++ + + AG P D T
Sbjct: 98 VAEIKIGIEARSVESSKFKGYEDRYT-------------IAGAYWPPQFAIMDGETLEPK 144
Query: 338 RTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 396
+ ++ G V + +HP+ + ++ ++ + V KV ++ +
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG-------KVLLVNYKDIDN 197
Query: 397 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 456
AA + W A + + L +++
Sbjct: 198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 457 AFAHPNKQLCIVTCGDDK--------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES- 507
F HP T K A +K +G + H K S
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 508 IQFIFSTAIDGKIKAWLYDY-------------LGSRVDYDAPGNWCTMMAYSADGTRL- 553
+ + D +I + + + D Y+ G +
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377
Query: 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584
FS K S LV ++ +K R
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 514
L VT D I + D + + + A + +++
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASG--RYLLVI 79
Query: 515 AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYSADGTRLFSCG 557
D +I + + + + +
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.004
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
N + + + + ++ + + S + L+ G DA++ M
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMID 89
Query: 950 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 990
+ E K I+ E+ + + +
Sbjct: 90 LWAKEPTKVAEIKIGIE---ARSVESSKFKGYEDRYTIAGA 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 4/171 (2%)
Query: 331 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS 390
+L TV + S+D + ++ G N G + + E+ + L + + I+
Sbjct: 172 ELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 391 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV 450
++ ++ G + PT + L AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 451 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
V ++F + + + G D ++ WDV + T H +
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 22/302 (7%), Positives = 71/302 (23%), Gaps = 43/302 (14%)
Query: 431 LYTYNPTGELRQHLEIDAHVGGVNDIAF-----AHPNKQLCIVTCGDDKMIKVWDVVAGR 485
+ + H G++ + + + T + + +
Sbjct: 41 NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100
Query: 486 KQYTFEGHEAPVYSVCPHHKE-------------SIQFIFSTAIDGKIKAW--------- 523
+ + + + +T + G W
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160
Query: 524 ---------LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK----EGESHLVEWN 570
+ G+ P + T + S G + + + S L
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219
Query: 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630
E + RS+ + + I ++ + + ++
Sbjct: 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279
Query: 631 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG--VRLLRMLEGRAMDKNRCPSEPISSKPL 688
+ F +++++ +D+G + + +R + + + I +
Sbjct: 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339
Query: 689 TI 690
+
Sbjct: 340 IL 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 37/374 (9%), Positives = 99/374 (26%), Gaps = 33/374 (8%)
Query: 589 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648
+ + ++ + +K WD ++ D + + L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74
Query: 649 SDNGIKILA--NSDG-VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705
+ ++A + G + R+ K + + + S +
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGA 129
Query: 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 765
+ +R + G+ + A++ + + P + +++ P
Sbjct: 130 SNDRLLSHRLVA-----TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 825
A S + + GL +A+ + + + + S
Sbjct: 185 QFATS----VDISERGL----IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236
Query: 826 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 885
+ S + + + + L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 886 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI----TGLAFSPTLNALVSSGA 941
F+ + D ++ ++V+ E T L H + I LA ++L G
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 942 DAQLCMWSIDKWEK 955
++ + +K
Sbjct: 355 -----VFDVKFLKK 363
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.002
Identities = 24/202 (11%), Positives = 47/202 (23%), Gaps = 26/202 (12%)
Query: 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS-----RFIQAPAGRQSPL 971
K H I ++ + VS D L +W + +G
Sbjct: 10 GKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 972 VGETKVQFHNDQTHLLVV-HESQISVYD-------------SKLECSRSWSPKDALPAPI 1017
V + + + + + Y
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 1018 SSAIYSCDGLLVYAGFCDGAIGVFDA-----ETLRFRCRIGPSAYIPTYAVSSNTAHPLV 1072
++ + A G ++ E+ P+ + S T
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 1073 IAPHPSEPNQIALGMSDGAVHV 1094
+ SE IA G ++G V +
Sbjct: 188 TSVDISERGLIATGFNNGTVQI 209
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 8e-07
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 940
A L P + I +SV V H ++ T SP+ S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 941 ADAQLCMWSIDKWEKLKSRFIQAPAGRQS 969
+ +W + + I +G
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468
G G + + + TG + G P+ I
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IA 254
Query: 469 TCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
+ DK IK+W+V + + T E + Q + S + +G I
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 864 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN- 922
F+ ++ + F D IA D +++I+NV +V+ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 923 RITGLAFSPTLNALVSSGADAQLCMWSID 951
L T ALVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 5e-05
Identities = 31/297 (10%), Positives = 74/297 (24%), Gaps = 20/297 (6%)
Query: 320 VAHTPNVYSQDDLTKTVVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 378
+ +VY+ + T + S+ P G G++ +W+
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTH 92
Query: 379 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 438
+ V+ + + F + +
Sbjct: 93 ILKTTIPVFSGPVKDISWDS-----------ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141
Query: 439 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 498
Q +++ + V + K ++ P
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201
Query: 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558
S+ + +DG D + A + +S DGT++ S
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDD---SLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615
K + WN + +++T + + T+ ++ I F + +
Sbjct: 259 DK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 31/333 (9%), Positives = 77/333 (23%), Gaps = 27/333 (8%)
Query: 317 FAGVAHTPNVYSQDDLTKTVVRTL---NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 373
A + D V + + + G M P + + ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 374 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLGVAFSKHIVHLY 432
+ E L + S+ AA+S + + + + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSL-------FGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 433 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-------CIVTCGDDKMIKVWDVVAGR 485
E + + +A+A +L ++ +++ + +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545
+ + V++ ++ D G D M
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMRE 235
Query: 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------VQFDTTRNR 599
FS + + + + + V T +
Sbjct: 236 VRIMDVFYFSTAVNPAK--TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 600 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632
G + +D + + VD G S
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 23/331 (6%), Positives = 78/331 (23%), Gaps = 40/331 (12%)
Query: 331 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDI 389
D++ T V + + + + + + GT GD + +++ + + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 390 SAAS-----------MPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 438
+ + ++ + ++ S + + P
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 439 ELRQHLEIDAHVGGVN---------------DIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483
+ + + D A A + + D V
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 484 GR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYD 535
K + + ++ ++ +
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595
P ++ + + L++++ + + ++
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-----LRLSA 324
Query: 596 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626
R + D+ +I + ++ TV+ D
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 333 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 392
+ + S + P + V E G +
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 393 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 452
L + + + V G A K ++ Y T ++ +
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEV------KNN 316
Query: 453 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497
+ D+ + K + + DD I + + + T E + P+
Sbjct: 317 LTDLRLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 7e-05
Identities = 36/364 (9%), Positives = 90/364 (24%), Gaps = 32/364 (8%)
Query: 599 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI-LA 657
+A Q D+ +L + R + + + + G + +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71
Query: 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 717
+ + + E + + + PT+ R
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 718 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV---R 774
+ D +++ + D+ A A +
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 775 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 834
+Y S SL V ++ + P P S T + + +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 835 PTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 894
+ S+ + ++++ S +
Sbjct: 252 MYKRSSPIN-------------------VDPGDYRMIIPLESSILIYSVPVHGE-FAAYY 291
Query: 895 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 954
E + Y+V+ K+ +N +T L S ++ D ++ + ++K E
Sbjct: 292 QGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Query: 955 KLKS 958
++
Sbjct: 348 DERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.002
Identities = 28/246 (11%), Positives = 52/246 (21%), Gaps = 18/246 (7%)
Query: 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 938
P+ F P D ++IA Q + V RI +
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 939 SGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 996
G L ++ + K ND+ ++ V
Sbjct: 60 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 997 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1056
+ + A G+ AI V+D E + ++
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179
Query: 1057 YIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1116
+ ++ + + + PL
Sbjct: 180 HDYAP-------------AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226
Query: 1117 SNSSNP 1122
S NP
Sbjct: 227 PGSPNP 232
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.002
Identities = 33/349 (9%), Positives = 78/349 (22%), Gaps = 34/349 (9%)
Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489
+ + +G + + + K I + + ++D K
Sbjct: 25 QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-YRTGKAEK 80
Query: 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMA 545
FE + V+++ + + +
Sbjct: 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 140
Query: 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605
+ A G L T + ++ I + FD
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSY 198
Query: 606 EFQIKFWDMDNMNMLTTV-----------DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654
D +N V + PR ++ G
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
Query: 655 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 714
I + R++ LE + + ++ G +
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEVKNNL 317
Query: 715 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763
+ +S+ D ++ V +D KI ++ + P + +
Sbjct: 318 TDLRLSA----DRKTVM-----VRKDDGKIYTF---PLEKPEDERTVET 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
S R V V + ++ D I
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 467 IVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
T G D I+VWDV + +++T + + V + I S ++DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 23/253 (9%), Positives = 59/253 (23%), Gaps = 10/253 (3%)
Query: 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG 471
+ P + K + ++ ++ H V + F+ + +
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 84
Query: 472 DDKMIKVWDVVAGRKQYTF--------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
+ + VW ++ + + P+ + + + D
Sbjct: 85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 144
Query: 524 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583
+D S + A RT+
Sbjct: 145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204
Query: 584 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGS 642
V + + G + +I +D + L ++ D +
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 643 LLAVTTSDNGIKI 655
A +D I++
Sbjct: 265 KFATVGADATIRV 277
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 8/101 (7%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 381 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 440
+ +D + + + D + + ++ T +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKC 285
Query: 441 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481
Q +D G + I++ D + +++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 6e-04
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQ-NRITGLAFSPTLNA-- 935
T L++ P N I + + V+ + +V + GH + +T + FSP +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 936 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 985
L S ++ +W ++ S + + Q + + + +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 36/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 316 SFAGVAHTPN--VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 373
+FA +A++ + + D + V T+ GSN M P + + + D+S+ +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 374 GSRERLAHKPF----------------------KVWDISAASMPLQNALLNDAAISVNRC 411
+ +A P + A S
Sbjct: 62 ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL 121
Query: 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 471
PDG L V + T + + + G+ +
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181
Query: 472 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 531
+ V + V EA + + + + ++ + + +
Sbjct: 182 ISVIDTVTNSV-----IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236
Query: 532 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGV 590
G +A + DG +++ + + + + + I T + G + G
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVY---VALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488
+H++ N G L ++ G V + P+K+ V + + + +
Sbjct: 16 IHVWNLNHEGALTL-TQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73
Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544
TF A S+ ST G+ G+ +
Sbjct: 74 TFAAESALPGSLTH---------ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.001
Identities = 23/299 (7%), Positives = 66/299 (22%), Gaps = 46/299 (15%)
Query: 326 VYSQDDLTK-TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 384
V++ + T+ + ++ V M P ++ + + + + + +
Sbjct: 18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 385 KVWDISAAS--------------------------------MPLQNALLNDAAISVNRCV 412
+ + + + D S N
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137
Query: 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472
+ + + + + + + E+ G HPN+Q
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----- 527
+ + VW++ + + + +
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 257
Query: 528 -------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579
+ S+ + G L + G K + E +G +
Sbjct: 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEK 315
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 6e-05
Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 7/138 (5%)
Query: 359 LLVGTNVGDISLWEVGSRERLAHKPFK---VWDISAASMPLQNALLNDAAISVNRCVWGP 415
L+ T G I ++ S + + + + P + +
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268
Query: 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475
+ V + TGE E ++ I + K L DK
Sbjct: 269 QRDEWRHKTASRFVVVLDA-KTGERLAKFE---MGHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 476 IKVWDVVAGRKQYTFEGH 493
+ + D +G + +
Sbjct: 325 LYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 44/318 (13%)
Query: 298 ADSDHLMKRIRTGQSDEVSFA------GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 351
++ ++ I G A A T V + + + + D
Sbjct: 35 GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94
Query: 352 HPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALLNDAAI- 406
LVGT SL G V D+ + + + I
Sbjct: 95 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154
Query: 407 ---SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 463
+ DG + VAF T+ +N A++
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------INHPAYSQKAG 207
Query: 464 QLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFS-------- 513
+L T I D+ +G ++ E + Q +
Sbjct: 208 RLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 514 --------TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564
+ D G R+ G+ + S D L ++ +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 565 HLVEWNESEGAIKRTYSG 582
++ + G R+ +
Sbjct: 326 YI--HDAESGEELRSVNQ 341
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 43.0 bits (101), Expect = 2e-04
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 20/176 (11%)
Query: 826 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 885
+ + A K ++ + + T ++ P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF-TRYIPVPKNPHGLN 264
Query: 886 FHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITG----------LAFSPTLN 934
P IA G +V + + ++D++ ++ I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 935 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 990
A + D+Q+C W+I I+ G + + + K+ H
Sbjct: 325 AYTTLFIDSQVCKWNIADA-------IKHYNGDRVNYIRQ-KLDVQYQPGHNHASL 372
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 2e-04
Identities = 23/237 (9%), Positives = 52/237 (21%), Gaps = 28/237 (11%)
Query: 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 402
G ++ S P + + N +V+ +
Sbjct: 88 GRSMYSFAISPDGKE-VYATVNPTQRLNDHYVV----KPPRLEVFSTADGLEAKPVRTFP 142
Query: 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---------------- 446
V DG + + + + T T L
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 447 -DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHH 504
H + + + T D+ G+ F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561
K+ Q ++ + + + +A+ G +L+ GT +
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.7 bits (91), Expect = 0.001
Identities = 17/172 (9%), Positives = 40/172 (23%), Gaps = 14/172 (8%)
Query: 333 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER-------LAHKPFK 385
T L + P + + S+ +R + A +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 386 VWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 445
+ + D + P + + + Y +L +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLK-QRKLIKAAN 289
Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497
+D +AF +L G + V++ K + +
Sbjct: 290 LD---HTYYCVAFDKKGDKL--YLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 0.002
Identities = 13/134 (9%), Positives = 42/134 (31%), Gaps = 4/134 (2%)
Query: 261 HPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGV 320
+ + + TG T + ++ +R+ + + +
Sbjct: 212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL 271
Query: 321 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 380
+ D + +++ N + F + L +G D++++ + E++
Sbjct: 272 NR---LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVK 327
Query: 381 HKPFKVWDISAASM 394
+ D+S +
Sbjct: 328 NIKLPGGDMSTTTP 341
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (98), Expect = 3e-04
Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 31/203 (15%)
Query: 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMT 867
+ + V P+ + D+ +N V G+++L + T
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDL----------------ENLFSVTLRDAGQIALIDGST 51
Query: 868 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------RVDEVKTKLKGHQ 921
+++ T+ + A + + D V + ++ V E+K +
Sbjct: 52 YEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 108
Query: 922 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF- 979
+ T A+ + Q + + E K + + + E +V
Sbjct: 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168
Query: 980 ---HNDQTHLLVVHES-QISVYD 998
H ++ V E+ +I + D
Sbjct: 169 LASHYRPEFIVNVKETGKILLVD 191
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (94), Expect = 9e-04
Identities = 22/195 (11%), Positives = 46/195 (23%), Gaps = 15/195 (7%)
Query: 439 ELRQHLEIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497
E+R+ ++ + L VT D I + D + + A
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSADGTR 552
+ +++F DGK+ + T +
Sbjct: 65 HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA---GDEFQI 609
+ V + K+ S R + A EF +
Sbjct: 123 AIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 610 KFWDMDNMNMLTTVD 624
+ + ++ D
Sbjct: 180 NVKETGKILLVDYTD 194
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.6 bits (91), Expect = 0.002
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495
G+ + + + I A +++ ++D + + Q + E +
Sbjct: 302 SVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
Query: 496 P 496
P
Sbjct: 359 P 359
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Score = 39.1 bits (90), Expect = 0.002
Identities = 22/171 (12%), Positives = 50/171 (29%), Gaps = 4/171 (2%)
Query: 330 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWD 388
+ G + + D + I L+ +++ + + F V +
Sbjct: 69 SPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128
Query: 389 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEID 447
+QN + ++ V+ P L + + + + +GE+ +D
Sbjct: 129 TGKLEKNVQNYEYQENT-GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187
Query: 448 AHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497
A G + A HP I + + + H P+
Sbjct: 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1132 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.73 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.6 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.55 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.53 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.51 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.35 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.18 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.12 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.08 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.02 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.98 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.97 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.95 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.93 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.8 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.66 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.49 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.31 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.3 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.24 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.92 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.84 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.74 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.71 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.69 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.65 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.63 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.62 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.62 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.59 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.58 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.55 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.49 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.48 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.45 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.44 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 97.27 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.24 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.18 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.16 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.14 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.07 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.92 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.86 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.85 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.58 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.73 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.71 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.55 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.41 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.02 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.68 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.34 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.03 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.66 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.07 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.08 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 86.53 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.23 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-36 Score=337.56 Aligned_cols=295 Identities=13% Similarity=0.198 Sum_probs=254.8
Q ss_pred ccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 333 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 333 ~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..+.+.++.|...|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~ 104 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEE
T ss_pred CceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEE
Confidence 346688889999999999999998 689987 89999999987654331 11112457999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
|+|||++|++|+.||.|++||+...... ....+..|...|.+++|+|++. ++++++.|+.|++||+.+++......+
T Consensus 105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~ 181 (337)
T d1gxra_ 105 LLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 9999999999999999999999865432 3336778999999999999999 899999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|...|.+++|++.+ ..+++++.|+.+++||+++++....+. +...|.+++|+|+++++++++. ++.+++||++
T Consensus 182 ~~~~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cccccccccccccc--cccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccc
Confidence 99999999997754 899999999999999999877665554 6778999999999999999875 7789999999
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
+++... ...|.. .|.+++|+|++++|++++.||.|++||..+++.+..+... ..|.+++|+|++++|++|+.||+
T Consensus 255 ~~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 255 KPDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SSCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred cccccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCe
Confidence 887654 445555 8999999999999999999999999999999998887643 47999999999999999999999
Q ss_pred EEEEEc
Q 001176 653 IKILAN 658 (1132)
Q Consensus 653 i~iw~~ 658 (1132)
|++||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.7e-35 Score=321.13 Aligned_cols=287 Identities=14% Similarity=0.204 Sum_probs=246.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+++.+.+++++|+|+. ++.++ ++.|.+||+.+++.... +.+|.+.|++++|+|||++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeEe
Confidence 4457788999999995 55554 67899999998766542 678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
+|+.||+|+|||+.++..... ..+.+|.++|.+++|+|+++ +|++++. ++.++||++++++...++.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998775432 35788999999999999999 6777765 567999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
++|+|+++ ..+++|+.|+.|++||+++.+....+..|...|.+++|+|+++++++++. ++.|++||..++..+..
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99988653 46889999999999999998888899999999999999999999999875 78899999999887776
Q ss_pred ec-------cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 580 YS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 580 ~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
+. +|.. .|.+++|+|++++|++|+.||.|++||+++++++..+..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 64 3444 7999999999999999999999999999999999998766432 2344556666778999999999
Q ss_pred EEEEEcC
Q 001176 653 IKILANS 659 (1132)
Q Consensus 653 i~iw~~~ 659 (1132)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999963
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.8e-35 Score=322.70 Aligned_cols=310 Identities=17% Similarity=0.284 Sum_probs=266.0
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
....++|+||.++|++++|+|++ .+|+||+.||+|++||+.+++....+..|...|.+++|+|++.+++++.. +
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~----~ 80 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA----D 80 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSS--SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET----T
T ss_pred CCccEEEcCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc----c
Confidence 34456899999999999998854 89999999999999999999999999999999999999999999999875 6
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1132)
+.+..|+....+....+.++.. .+.++.|+++++.+++++.|+.+++||+.+++.+..+..+.. .+.+++|++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 157 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTL 157 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSE
T ss_pred cccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecccCCCE
Confidence 6789999998888888888777 789999999999999999999999999999999999987754 7899999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccC
Q 001176 644 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 723 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1132)
|++++.|+.|++|+..++ .....+.+
T Consensus 158 l~~~~~d~~v~~~~~~~~-~~~~~~~~----------------------------------------------------- 183 (317)
T d1vyhc1 158 IASCSNDQTVRVWVVATK-ECKAELRE----------------------------------------------------- 183 (317)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECC-----------------------------------------------------
T ss_pred EEEEeCCCeEEEEeeccc-eeeEEEec-----------------------------------------------------
Confidence 999999999999999877 33333322
Q ss_pred cCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccC
Q 001176 724 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 803 (1132)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 803 (1132)
+...+.++.++|++.........
T Consensus 184 --------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~------------- 206 (317)
T d1vyhc1 184 --------------------------------------------HRHVVECISWAPESSYSSISEAT------------- 206 (317)
T ss_dssp --------------------------------------------CSSCEEEEEECCSCGGGGGGGCC-------------
T ss_pred --------------------------------------------CCCCceEEEEeeccccceeeccc-------------
Confidence 33456777787776533322111
Q ss_pred CCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeE
Q 001176 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 882 (1132)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 882 (1132)
.........++.++++++ |+.|++||+.+++++.++.+|...|+
T Consensus 207 -----------------------------------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 207 -----------------------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp -----------------------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred -----------------------------------cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 122233445778888888 99999999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
+++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+|++++|+|++.||+|++||
T Consensus 252 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4e-35 Score=322.55 Aligned_cols=286 Identities=20% Similarity=0.359 Sum_probs=261.6
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
.+|. |.+.|++++|+|+++ +|++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~ 70 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 70 (317)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeecc
Confidence 3566 999999999999998 799999999999999999887653 6789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
+.++++++.++.+.+|+....+... .+.+|...+.++.|+|++. .+++++.|+.+++||+++++.+..+.+|...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 145 (317)
T d1vyhc1 71 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 145 (317)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCc
Confidence 9999999999999999988876544 5678999999999999999 8999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC--------------------CEEEEE
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--------------------TRLFSC 556 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~ 556 (1132)
+.++++++++ .+|++++.|+.|++|++.+......+..+...+.+++++|++ ..++++
T Consensus 146 ~~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (317)
T d1vyhc1 146 VRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223 (317)
T ss_dssp EEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred ceeeecccCC--CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence 9999998754 899999999999999999999999999999999999998864 356666
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ++.|++||..+++++.++.+|.. .|.+++|+|++++|++++.||.|++||+.+++++..+..|.. .|++++
T Consensus 224 ~~----d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~ 296 (317)
T d1vyhc1 224 SR----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLD 296 (317)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEE
T ss_pred cC----CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 54 78899999999999999999887 899999999999999999999999999999999999987754 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEE
Q 001176 637 FNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
|+|++++|++|+.||+|++||
T Consensus 297 ~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 297 FHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECSSSSCEEEEETTSEEEEEC
T ss_pred EcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-34 Score=322.08 Aligned_cols=282 Identities=13% Similarity=0.172 Sum_probs=239.5
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
|...|.+++|+|+|++|++++ ||.|+|||+...... ......... .| ...|.+++|+|
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~--~h-~~~I~~v~~s~ 107 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCL--NR-DNYIRSCKLLP 107 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECS--CT-TSBEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeec--CC-CCcEEEEEEcC
Confidence 888999999999999999986 899999997542210 001111122 26 88999999999
Q ss_pred CCCEEEEee-CCeEEEEECCC--CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 924 (1132)
||++|++++ ||+|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.+++......+|...|
T Consensus 108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v 186 (337)
T d1gxra_ 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 999999998 99999999874 456677888999999999999 89999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~ 1003 (1132)
++++|++++..+++++.|+.|++||+.+++.+... . +. ..+.+++|+|+++++++ +.|+.+++||+....
T Consensus 187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-----~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~ 257 (337)
T d1gxra_ 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-----D-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----E-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred ccccccccccccccccccccccccccccceeeccc-----c-cc---cceEEEEEcccccccceeccccccccccccccc
Confidence 99999999999999999999999999987643321 1 12 56899999999999998 578999999994443
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
.... ..|...|++++|+|||++|++|+.||.|++||+.+++.+..+ .|...+.+++|+| ++++|
T Consensus 258 ~~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~------------~~~~~v~~~~~s~-d~~~l 321 (337)
T d1gxra_ 258 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISV-DDKYI 321 (337)
T ss_dssp EEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECT-TSCEE
T ss_pred cccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc------------cCCCCEEEEEEeC-CCCEE
Confidence 3332 456899999999999999999999999999999999887654 4567899999999 88999
Q ss_pred EEEeCCCcEEEEec
Q 001176 1084 ALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~ 1097 (1132)
++|+.||+|+|||+
T Consensus 322 ~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 99999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-34 Score=325.04 Aligned_cols=308 Identities=14% Similarity=0.250 Sum_probs=244.0
Q ss_pred ceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 335 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
....++.|++.|+|++|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEEC
Confidence 4456677999999999999998 689987 899999999998775431100000 0000011122245688999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 494 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 494 (1132)
|||++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........+.
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccc
Confidence 999999999999999999999876554 5778999999999999998 79999999999999999998887776555
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
. ..++.+.+ .++.+|++++.||.|++||..+......+ ..|...|.+++|+|++++|++++. ++.|+
T Consensus 206 ~-~~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 206 G-VTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp C-EEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred c-cccccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEE
Confidence 4 44555544 35589999999999999999987765543 346778999999999999999975 78899
Q ss_pred EEeCCCCce------------eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001176 568 EWNESEGAI------------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 635 (1132)
Q Consensus 568 ~wd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1132)
+||+.++.. ......|.. .|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEE
Confidence 999976543 233444554 799999999999999999999999999999999999998754 78887
Q ss_pred E------EcCCCCEEEEEeCCCcEEEEEcC
Q 001176 636 R------FNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 636 ~------~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+ |+|++.+|++|+.||+|++|+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 6 46789999999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-33 Score=321.53 Aligned_cols=347 Identities=15% Similarity=0.252 Sum_probs=254.7
Q ss_pred EEEeCCCeEEEEEecCCCceee-eeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
..+..++...+|+....+.... .....+|.+.|+|++|+|||+ +|++|+ |+.|+|||+.+++.+.++..+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 4566778899999776554332 223346999999999999999 899987 899999999999999888776543322
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
... + .......+...|++++|+|++++|++++. ++.|++||...++.+..
T Consensus 109 ~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 109 PEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----ccccccccccccccccc
Confidence 110 0 01122346778999999999999999985 78899999999999999
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEc
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 658 (1132)
+.+|.. .|.++.+++++..+++++.++.+++||..+.........+.. ..++.+.+ ++.+|++++.||.|++|+.
T Consensus 159 ~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 234 (388)
T d1erja_ 159 LQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDS 234 (388)
T ss_dssp ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred cccccc-cccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeec
Confidence 999887 899999999999999999999999999999888877765533 44555555 8999999999999999999
Q ss_pred CCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccc
Q 001176 659 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 738 (1132)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1132)
.++ .....+.....
T Consensus 235 ~~~-~~~~~~~~~~~----------------------------------------------------------------- 248 (388)
T d1erja_ 235 ETG-FLVERLDSENE----------------------------------------------------------------- 248 (388)
T ss_dssp TTC-CEEEEEC---------------------------------------------------------------------
T ss_pred ccC-ccceeeccccc-----------------------------------------------------------------
Confidence 877 22222111000
Q ss_pred cccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccc
Q 001176 739 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 818 (1132)
Q Consensus 739 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~ 818 (1132)
...+|...|.+++|+|+++.|++++.||.+++||+....
T Consensus 249 -------------------------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~---------------- 287 (388)
T d1erja_ 249 -------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN---------------- 287 (388)
T ss_dssp ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------
T ss_pred -------------------------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc----------------
Confidence 001144556666666666666666666666666542100
Q ss_pred cCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe
Q 001176 819 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 898 (1132)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 898 (1132)
... ... ....+........|...|++++|+| ++++|++|+
T Consensus 288 ------~~~--------------~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~ 327 (388)
T d1erja_ 288 ------NKS--------------DSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGS 327 (388)
T ss_dssp --------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEE
T ss_pred ------ccc--------------ccc-------------------cccccceeeecccccceEEEEEECC-CCCEEEEEe
Confidence 000 000 0011234455667889999999999 899999999
Q ss_pred CCCcEEEEEcccceeeeeeccccCCeeEEEE------cCCCCEEEEEcCCCcEEEEECC
Q 001176 899 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAF------SPTLNALVSSGADAQLCMWSID 951 (1132)
Q Consensus 899 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~------spdg~~l~s~~~D~~i~iwd~~ 951 (1132)
.||.|++||+.+++++.++.+|.+.|+++++ +|++++||||+.||+|++|+++
T Consensus 328 ~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999999999999999975 6789999999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3e-33 Score=305.84 Aligned_cols=276 Identities=13% Similarity=0.144 Sum_probs=230.7
Q ss_pred cceeeecCCCCCCceecc------CCcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccce
Q 001176 312 SDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 384 (1132)
Q Consensus 312 v~~~~~~~~g~~~~~~~~------d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~ 384 (1132)
...++++|+|..++.... +.........+. |.+.|+|++|||+|+ +||+|+.||+|+|||+.+++.....
T Consensus 20 ~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~~-- 96 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT-- 96 (311)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE--
T ss_pred eEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCC-eEeccccCceEeeeeeecccccccc--
Confidence 345677788877665432 334455666666 999999999999998 6999999999999999987654321
Q ss_pred eeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCC
Q 001176 385 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 462 (1132)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~ 462 (1132)
.+.+|.++|.+++|+|++++|++++. +..++||++++++... .+.+|...|++++|+|++
T Consensus 97 ---------------~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~---~l~~h~~~v~~v~~~~~~ 158 (311)
T d1nr0a1 97 ---------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG---NLTGQARAMNSVDFKPSR 158 (311)
T ss_dssp ---------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB---CCCCCSSCEEEEEECSSS
T ss_pred ---------------ccccccCccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc
Confidence 14579999999999999999999976 4569999999987655 578999999999999999
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-------
Q 001176 463 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------- 535 (1132)
Q Consensus 463 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------- 535 (1132)
+. .|++|+.|+.|++||+++++....+.+|..+|++++++|+ +.++++++.|+.|++||+.+......+.
T Consensus 159 ~~-~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~--~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 235 (311)
T d1nr0a1 159 PF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 235 (311)
T ss_dssp SC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred ee-eecccccccccccccccccccccccccccccccccccCcc--ccccccccccccccccccccccccccccccccccc
Confidence 85 5889999999999999999999999999999999999885 4899999999999999999877665443
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
+|...|++++|+|++++|++++. |+.|++||++++++++++..+.......+.+.++++.+++++.||.|++||++
T Consensus 236 ~h~~~V~~~~~s~~~~~l~tgs~----Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 236 AHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cccccccccccCCCCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 46678999999999999999975 78899999999999999987754334445555667789999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-32 Score=305.73 Aligned_cols=293 Identities=19% Similarity=0.297 Sum_probs=256.5
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
.+..++|. |.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~ 104 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence 45677888 999999999999998 799999999999999999887653 567999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
|+|+++++++|+.|+.+++|+....... .....+.+|...........+. .+..+..|.....|+...........
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 9999999999999999999998765432 2334567788877777666654 57788889999999998888888888
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.+...+....+.+.. .++++++.|+.|++||+++......+..|...|++++|+|++++|++++. ++.|++||+
T Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~ 255 (340)
T d1tbga_ 182 GHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred ccceeEeeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence 888899988887654 89999999999999999999999999999999999999999999999975 788999999
Q ss_pred CCCceeeeeccc-cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 572 SEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 572 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.....+..+... ....+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~D 333 (340)
T d1tbga_ 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETT
T ss_pred cccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccC
Confidence 998887766432 233699999999999999999999999999999999999987754 89999999999999999999
Q ss_pred CcEEEEE
Q 001176 651 NGIKILA 657 (1132)
Q Consensus 651 g~i~iw~ 657 (1132)
|.|++||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.7e-33 Score=313.70 Aligned_cols=291 Identities=13% Similarity=0.106 Sum_probs=233.4
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
.++|+|++|||||+ +||+|+.||.|+|||+.+++.... ..+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence 46899999999998 689999999999999987753321 126789999999999999999999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE----EEEecCCCCCeE
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QYTFEGHEAPVY 498 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~~h~~~v~ 498 (1132)
|+.|++|+|||+.++... ....+.+|...|.+++|+|+++ .|++|+.|++|++|++..... ......|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 999999999999876533 3335678999999999999999 899999999999999876543 334567999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCC------------------ceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+++|+|+ +.+|++|+.|++|++||..... .......|...|.+++|+|++++|++++.
T Consensus 146 ~v~~~p~--~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred ccccccc--ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 9999885 4899999999999999976432 23345667788999999999999999975
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeeEEEE--e------------
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTV--D------------ 624 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--~------------ 624 (1132)
|+.|++||+.+++.+..+..|.. +|.+++|+|++.++++ +.|+.+++|.... +...... .
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred --CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence 78899999999999999998877 8999999999876665 5577776665433 2211000 0
Q ss_pred -----------------------CCCCCCCcceEEEcCCC----CEEEEEeCCCcEEEEEcCCcc
Q 001176 625 -----------------------ADGGLPASPRLRFNKEG----SLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 625 -----------------------~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
...|...|+++++.+.+ ..+++++.||.|++||+++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 00134468888887744 368999999999999997653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-32 Score=303.49 Aligned_cols=243 Identities=21% Similarity=0.338 Sum_probs=196.8
Q ss_pred ccCCCCcCe-EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 400 LLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 400 ~~~~h~~~V-~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
.|.||...| +|++| |+++||+|+.||+|+|||+.+++.+. ++.+|.++|++++|+|++ +|++|+.|++|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence 378998886 55554 78999999999999999999987655 688999999999999864 6999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-----------------------
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD----------------------- 535 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~----------------------- 535 (1132)
|++...+.......+.............++..+++++.|+.|++||+..........
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence 999999988777666555555554445566899999999999999997654332111
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
.+... ...+.++++.++.+.. ++.+++||+.+++.+....++.. .+.++.|++++.++++++.|+.|++||..
T Consensus 159 ~~~~~--v~~~~~~~~~~~~~~~----d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 231 (355)
T d1nexb2 159 GHMAS--VRTVSGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLE 231 (355)
T ss_dssp CCSSC--EEEEEEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ecccc--ccccccccceeeeecc----cceeeeeecccccceeeeecccc-ccccccccccceeeecccccceEEeeecc
Confidence 11112 2345567888888874 77899999999999988888776 78899999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 616 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++..+..+..|.. .|.+++++ +++|++++.||.|++||+.+.
T Consensus 232 ~~~~~~~~~~h~~--~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 232 NGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp TCCEEEEECCCSS--CCCEEEEC--SSEEEEECTTSEEEEEETTTC
T ss_pred ccccccccccccc--cccccccc--cceeeeeeccccccccccccc
Confidence 9999999987754 78999886 469999999999999998655
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.2e-32 Score=298.40 Aligned_cols=291 Identities=10% Similarity=0.094 Sum_probs=228.2
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
+...++++ |.+.|++++|||||+ +|++|+.||+|++||+.+++.+.. ...+|...|.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~ 62 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIK 62 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEE
Confidence 45677888 999999999999998 699999999999999999876543 1356999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
|+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+.. +.....
T Consensus 63 ~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~-- 134 (299)
T d1nr0a2 63 TTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP-- 134 (299)
T ss_dssp ECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--
T ss_pred eeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc--cccccc--
Confidence 99999755 556799999999876543222223446788899999999998 455554 6789999843 333333
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
....+.+++|+|+ +.++++++.||.|++||+++..... ....|...|.+++|+|++++|++++. ++.|++||+
T Consensus 135 ~~~~~~~~~~s~~--~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~ 208 (299)
T d1nr0a2 135 ISYNSSCVALSND--KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSV 208 (299)
T ss_dssp CSSCEEEEEECTT--SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEG
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccc
Confidence 3445788888775 4899999999999999998766543 44567889999999999999999875 778999999
Q ss_pred CCCceee---eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-CCCcceEEEcCCCCEEEEE
Q 001176 572 SEGAIKR---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 572 ~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 647 (1132)
.++.... .+.+|.. .|.+++|+|++++|++|+.||.|++||+.++..........+ ...+.++. ++++++|+++
T Consensus 209 ~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~ 286 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSA 286 (299)
T ss_dssp GGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEE
T ss_pred ccccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEE
Confidence 8876554 3455655 899999999999999999999999999988765444333322 23455554 4667899999
Q ss_pred eCCCcEEEEEcC
Q 001176 648 TSDNGIKILANS 659 (1132)
Q Consensus 648 ~~dg~i~iw~~~ 659 (1132)
+.|+.|++||+.
T Consensus 287 s~D~~i~iWdl~ 298 (299)
T d1nr0a2 287 GQDSNIKFWNVP 298 (299)
T ss_dssp ETTSCEEEEECC
T ss_pred eCCCEEEEEecc
Confidence 999999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.7e-31 Score=297.11 Aligned_cols=254 Identities=16% Similarity=0.242 Sum_probs=225.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|..+|.+++|+|++. ++++|+.|+.+++|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 77999999999999999999999999999999999987655 6788999999999999999 899999999999999
Q ss_pred CCCC----eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 481 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 481 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.... +....+.+|............ ..+.....|.....|.................+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 7654 345677788877776665443 578889999999999998887777788888899999999999999998
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ++.|++||+++++++..+.+|.. .|.+++|+|++++|++++.||.|++|++.....+..+........|.+++
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence 75 78899999999999999999887 89999999999999999999999999999999988887666666899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
|+|++++|++|+.||.|++||+.++ +....+
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~ 308 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL 308 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCC-cEEEEE
Confidence 9999999999999999999999877 444443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-31 Score=296.85 Aligned_cols=346 Identities=15% Similarity=0.210 Sum_probs=256.3
Q ss_pred eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
..+++||....++|++| ++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+ .+|++++.|+.|++|
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~--~V~~l~~s~~-~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAHG-GILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSS--CEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC--CEEEEEEcCC-CEEEEEecccccccc
Confidence 35688998745666655 578999999999999999999999999998755 8999999986 589999999999999
Q ss_pred EcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccc
Q 001176 657 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 736 (1132)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1132)
+.... .........
T Consensus 80 ~~~~~-~~~~~~~~~----------------------------------------------------------------- 93 (355)
T d1nexb2 80 DIKKG-CCTHVFEGH----------------------------------------------------------------- 93 (355)
T ss_dssp ETTTT-EEEEEECCC-----------------------------------------------------------------
T ss_pred ccccc-ccccccccc-----------------------------------------------------------------
Confidence 98876 222211110
Q ss_pred cccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccc
Q 001176 737 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 816 (1132)
Q Consensus 737 ~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 816 (1132)
.+........+.+++..+++++.|+.+++|++..................
T Consensus 94 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 143 (355)
T d1nexb2 94 ------------------------------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 143 (355)
T ss_dssp ------------------------------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEE
T ss_pred ------------------------------cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccc
Confidence 01223455667888999999999999999998764432221111111111
Q ss_pred cccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEE
Q 001176 817 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 895 (1132)
Q Consensus 817 l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la 895 (1132)
................ | .. ....+.+++++++++. |+.|++||+.+++.+....++...+.++.|+| ++.+++
T Consensus 144 ~~~~~~~~~~~~~~~~--~-~~--~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 217 (355)
T d1nexb2 144 FHTPEENPYFVGVLRG--H-MA--SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCI 217 (355)
T ss_dssp ESCTTTCTTEEEEEEC--C-SS--CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEE
T ss_pred eeccccccceeeeeee--c-cc--cccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeee
Confidence 1111111111100111 2 22 3345677899999998 89999999999999999999999999999999 899999
Q ss_pred EEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCce
Q 001176 896 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 975 (1132)
Q Consensus 896 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 975 (1132)
+++.||.|++||+.++..+..+.+|...|++++|+ +++|++++.||+|++||+.+..... . .|.. ....
T Consensus 218 ~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~---~~~~--~~~~ 286 (355)
T d1nexb2 218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----S---YHHT--NLSA 286 (355)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE----E---EECT--TCCC
T ss_pred cccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceec----c---cccC--CceE
Confidence 99999999999999999999999999999999986 4699999999999999998865321 1 1111 1223
Q ss_pred eEEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 976 KVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 976 ~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
..++++++++++++.|+.|++||+ +++.+.... .+|..+|++++|+|+ .++++++.||.++||.+
T Consensus 287 ~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~--~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI--LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT--TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEe--cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 346788999988899999999999 666654433 456899999999987 57888999999777654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-31 Score=291.07 Aligned_cols=295 Identities=16% Similarity=0.148 Sum_probs=225.5
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 696 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 696 (1132)
|+..+.+.+|.. .|++++|+|++++|++|+.||+|++||+.++ +..+.+.
T Consensus 2 g~~~~~~~GH~~--~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred CccceEcCCCCC--CcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence 456677777754 8999999999999999999999999999887 3332221
Q ss_pred ccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEE
Q 001176 697 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 776 (1132)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 776 (1132)
..|...|.+++
T Consensus 52 ---------------------------------------------------------------------~~h~~~v~~v~ 62 (299)
T d1nr0a2 52 ---------------------------------------------------------------------DVHATMITGIK 62 (299)
T ss_dssp ---------------------------------------------------------------------CSCSSCEEEEE
T ss_pred ---------------------------------------------------------------------CCCCCcEEEEE
Confidence 11567789999
Q ss_pred EecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee
Q 001176 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 856 (1132)
Q Consensus 777 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s 856 (1132)
|+|+|+ +++++.|+.+++|+........ .... . ..+ ...+.++++++++++++++.
T Consensus 63 ~~~~g~-~~~~~~d~~v~~~~~~~~~~~~-----------------~~~~---~--~~~-~~~~~~~~~s~~g~~~~~~~ 118 (299)
T d1nr0a2 63 TTSKGD-LFTVSWDDHLKVVPAGGSGVDS-----------------SKAV---A--NKL-SSQPLGLAVSADGDIAVAAC 118 (299)
T ss_dssp ECTTSC-EEEEETTTEEEEECSSSSSSCT-----------------TSCC---E--EEC-SSCEEEEEECTTSSCEEEEE
T ss_pred eeccce-eecccceeeEEEeccCCccccc-----------------cccc---c--ccc-cccccccccccccccccccc
Confidence 999997 6667789999999864322100 0000 0 013 66789999999999999988
Q ss_pred CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee-eeccccCCeeEEEEcCCCCE
Q 001176 857 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNA 935 (1132)
Q Consensus 857 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~ 935 (1132)
++.+++|+... ..... ....+++++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++
T Consensus 119 ~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (299)
T d1nr0a2 119 YKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193 (299)
T ss_dssp SSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccccccccc--ccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999643 32222 345688999999 89999999999999999998877544 34578999999999999999
Q ss_pred EEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCC
Q 001176 936 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA 1015 (1132)
Q Consensus 936 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~ 1015 (1132)
|++++.|+.|++||+.++.... ......+|..
T Consensus 194 l~~~~~d~~i~~~~~~~~~~~~------------------------------------------------~~~~~~~h~~ 225 (299)
T d1nr0a2 194 LVATDQSRKVIPYSVANNFELA------------------------------------------------HTNSWTFHTA 225 (299)
T ss_dssp EEEEETTSCEEEEEGGGTTEES------------------------------------------------CCCCCCCCSS
T ss_pred cccccccccccccccccccccc------------------------------------------------cccccccccc
Confidence 9999999999999998754211 0111245688
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCC-CCcEEEEeCCCCCCeEEEEeCCCcEEE
Q 001176 1016 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT-AHPLVIAPHPSEPNQIALGMSDGAVHV 1094 (1132)
Q Consensus 1016 ~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~Dg~i~v 1094 (1132)
+|++++|+|++++|++|+.||.|++||++++.....+. ...|. ..+.++.| + ++.+|++|+.|+.|++
T Consensus 226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~v~~~~~-~-~~~~l~s~s~D~~i~i 294 (299)
T d1nr0a2 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII---------KGAHAMSSVNSVIW-L-NETTIVSAGQDSNIKF 294 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE---------TTSSTTSCEEEEEE-E-ETTEEEEEETTSCEEE
T ss_pred ccccccccccccceEEEcCCCEEEEEECCCCCcceEEE---------ecCCCCCcEEEEEE-C-CCCEEEEEeCCCEEEE
Confidence 99999999999999999999999999999876543322 12333 34445544 4 4679999999999999
Q ss_pred EecC
Q 001176 1095 VEPS 1098 (1132)
Q Consensus 1095 W~~~ 1098 (1132)
||+.
T Consensus 295 Wdl~ 298 (299)
T d1nr0a2 295 WNVP 298 (299)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-31 Score=292.41 Aligned_cols=319 Identities=19% Similarity=0.300 Sum_probs=252.7
Q ss_pred eeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001176 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~ 522 (1132)
...|+||.+.|.+ +++++|+ +|+||+.||+|+|||+.++++++++.+|...|.+++|++ .+|++++.|+.+++
T Consensus 9 ~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 9 PKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKV 81 (342)
T ss_dssp CEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEE
T ss_pred CEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceecccccc
Confidence 3468999999865 4677888 899999999999999999999999999999999999975 58999999999999
Q ss_pred EEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE
Q 001176 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 602 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 602 (1132)
|+................+......+ ..+..+.. ++.+.+|+..+++....+..... . ...+.+....+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 152 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-A--VRCVQYDGRRVVS 152 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEET--TEEEEEET----TSEEEEEESSSCCEEEEEECCSS-C--EEEEEECSSCEEE
T ss_pred cccccccceecccccceeEeeeeccc--cccccccc----ceeEEEeecccccceeeeecccc-c--ceeeccccceeee
Confidence 99988777776666666666555443 45555543 77899999999888777765543 2 2334555678889
Q ss_pred EEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCC
Q 001176 603 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 682 (1132)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1132)
++.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+.++ +....+.+
T Consensus 153 ~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~------------ 215 (342)
T d2ovrb2 153 GAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLTG------------ 215 (342)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEEEEECC------------
T ss_pred ecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccc-eeeeEecc------------
Confidence 9999999999999999888887663 355666678899999999999999998665 21111100
Q ss_pred CCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEe
Q 001176 683 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 762 (1132)
Q Consensus 683 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 762 (1132)
T Consensus 216 -------------------------------------------------------------------------------- 215 (342)
T d2ovrb2 216 -------------------------------------------------------------------------------- 215 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 763 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 763 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
| ...+.+
T Consensus 216 ------------------------------------------------------------------------~-~~~v~~ 222 (342)
T d2ovrb2 216 ------------------------------------------------------------------------H-QSLTSG 222 (342)
T ss_dssp ------------------------------------------------------------------------C-CSCEEE
T ss_pred ------------------------------------------------------------------------c-ccceeE
Confidence 2 444555
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 918 (1132)
+++ ++++|++++ |+.|++||+...+....+.. |...+.++.+++ +++++|+.||.|++||+.+++.+..+.
T Consensus 223 ~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~ 297 (342)
T d2ovrb2 223 MEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLV 297 (342)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred Eec--CCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence 544 456888888 89999999988887777765 455667777654 699999999999999999999887763
Q ss_pred -----cccCCeeEEEEcCCCCEEEEEcCCCc----EEEEECCC
Q 001176 919 -----GHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 952 (1132)
Q Consensus 919 -----~h~~~V~~l~~spdg~~l~s~~~D~~----i~iwd~~~ 952 (1132)
+|.+.|++++|+|++.+|++|+.||+ |++||++.
T Consensus 298 ~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 67888999999999999999999986 99999874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-31 Score=301.41 Aligned_cols=245 Identities=15% Similarity=0.127 Sum_probs=207.0
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
+..+|+|++|||||++||+|+.||.|+|||..+++. .....+.+|.++|++++|+|+++ +|++|+.|++|+|||+.+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeecc
Confidence 346899999999999999999999999999987653 34457889999999999999999 899999999999999987
Q ss_pred CeEE--EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 484 GRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 484 ~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
+... ..+.+|...|.+++|+|++ ..|++++.|+++++|+++...... ....+...|.+++|+|++++|++++
T Consensus 83 ~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 83 RTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccccccccccc--ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence 7644 4567899999999998854 899999999999999998766533 3455778999999999999999997
Q ss_pred cCCCCCCeEEEEeCCCC------------------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 558 TSKEGESHLVEWNESEG------------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
. |+.+++||.... ..+....+|.. .+.+++|+|+++++++++.|+.|++||+.+++.
T Consensus 161 ~----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 161 C----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp T----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred c----CcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccccccccccCCcceEEeeecccc
Confidence 5 788999998643 23444555555 799999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+..+..+.. +|.+++|+|++++|++| .|+.+++|.....
T Consensus 236 ~~~~~~~~~--~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 236 VATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSA 274 (371)
T ss_dssp EEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred eeeeecccc--cceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence 999887754 79999999999887765 4777777765544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-30 Score=284.33 Aligned_cols=290 Identities=16% Similarity=0.255 Sum_probs=229.8
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
+.++.++|+ |.+.|.+ +++++|+ +||||+.||+|+|||+.+++.+.. +.+|.+.|.++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v 63 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSS 63 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEE
Confidence 345566777 9999865 4777888 699999999999999999987654 67899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+|+|+ +|++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+..+++....+.
T Consensus 64 ~~~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~ 134 (342)
T d2ovrb2 64 QMRDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLM 134 (342)
T ss_dssp EEETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred EeCCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeee
Confidence 99875 99999999999999998765433 3344555666555543 3 57888999999999999999888776
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.+......... . ...+++++.|+.|++||.........+..+...+..+. +++.++++++. ++.|++||+
T Consensus 135 ~~~~~~~~~~~--~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~----dg~i~~~d~ 204 (342)
T d2ovrb2 135 GHVAAVRCVQY--D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSL----DTSIRVWDV 204 (342)
T ss_dssp CCSSCEEEEEE--C--SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEET----TSCEEEEET
T ss_pred cccccceeecc--c--cceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeC----CCeEEEeec
Confidence 65554444332 2 26899999999999999998888888888877665554 57889999975 788999999
Q ss_pred CCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC-CCCCcceEEEcCCCCEEEEEeCC
Q 001176 572 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+.++.+..+.+|.. .+.+++++ ++++++++.|+.|++||....+....+..+. +...+.+ +.++++++++|+.|
T Consensus 205 ~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~s~D 279 (342)
T d2ovrb2 205 ETGNCIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC--LQFNKNFVITSSDD 279 (342)
T ss_dssp TTCCEEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE--EEECSSEEEEEETT
T ss_pred ccceeeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceee--cccCCCeeEEEcCC
Confidence 99999999998877 77777766 4699999999999999999998888876543 2233444 44567799999999
Q ss_pred CcEEEEEcCCcceeeeec
Q 001176 651 NGIKILANSDGVRLLRML 668 (1132)
Q Consensus 651 g~i~iw~~~~~~~~~~~~ 668 (1132)
|.|++||+.++ +.++.+
T Consensus 280 g~i~iwd~~tg-~~i~~~ 296 (342)
T d2ovrb2 280 GTVKLWDLKTG-EFIRNL 296 (342)
T ss_dssp SEEEEEETTTC-CEEEEE
T ss_pred CEEEEEECCCC-CEEEEE
Confidence 99999999988 444433
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.9e-30 Score=286.05 Aligned_cols=289 Identities=11% Similarity=0.179 Sum_probs=225.7
Q ss_pred CCeeEEEEccCCCeEEEEEc-CCCcEEEEecCCCccccccceeeeecccccccccccccCCC-CcCeEEEEEcC--CCCe
Q 001176 344 SNVMSMDFHPQQQTILLVGT-NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGP--DGLM 419 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp--dg~~ 419 (1132)
..+++++|+|+|+. ++.++ ....|+.|+......... ..+.+| ...|++++|+| +|.+
T Consensus 18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCE
Confidence 46789999999995 55554 333455565443322110 014556 56899999998 6789
Q ss_pred EEEEeCCCeEEEEEecCCCceee-----eeeeecccCCEEEEEEecCCCcEEEEEE--cCCCcEEEEECCCCeEEEEecC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQ-----HLEIDAHVGGVNDIAFAHPNKQLCIVTC--GDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~-----~~~l~~h~~~v~~v~~s~d~~~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
||+|+.||+|+|||+..++.... ...+..|.++|.+++|+++++ +++++ +.++.+++|++.+++.+..+.+
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSGNSLGEVSG 157 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTCCEEEECCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC--ccceeeccccceEEEEeecccccceeeee
Confidence 99999999999999987654322 123456889999999999999 45544 4578999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCeEEEEEEcCC-CCEEEEEecCCCCCCeEEE
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~ 568 (1132)
|...|.+++|++..+ .++++++.|+.+++||....+..... ..+...|.+++|+|+ +.++++++. |+.|++
T Consensus 158 h~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~i 232 (325)
T d1pgua1 158 HSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISC 232 (325)
T ss_dssp CSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEE
T ss_pred ccccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceee
Confidence 999999999988653 46889999999999999876655544 345668999999997 578888875 778999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC-CCEE
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFD---TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-GSLL 644 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l 644 (1132)
||+++++.+..+.+|.. .+..+.|+ |++++|++++.|+.|++||+.+++++..+..+.+...+..+++.+. +.+|
T Consensus 233 wd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (325)
T d1pgua1 233 FDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311 (325)
T ss_dssp EETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred eeecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEE
Confidence 99999999999998776 55444444 6889999999999999999999999999987766545566666543 3478
Q ss_pred EEEeCCCcEEEEEc
Q 001176 645 AVTTSDNGIKILAN 658 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~ 658 (1132)
++++.||.|++||+
T Consensus 312 ~s~s~dg~i~vwdl 325 (325)
T d1pgua1 312 ISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEECCCEEEEEEC
Confidence 99999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.9e-29 Score=273.40 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=214.8
Q ss_pred cceEEEEEecCCceEEeecccc-eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee-
Q 001176 770 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK- 847 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~- 847 (1132)
..+.+++|+|+|..++.++.+. .++.|+..... ......+.+ |....|++++|+|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~g--h~~~~v~~v~fsP~ 74 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK---------------------VPPVVQFTG--HGSSVVTTVKFSPI 74 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS---------------------SCSEEEECT--TTTSCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC---------------------ccceEEEeC--CCCCCEEEEEEeeC
Confidence 4567899999999988775543 34555432110 011111223 4256899999998
Q ss_pred -CCCEEEEee-CCeEEEEECCCCeE--------EEEeeCCCCCeEEEEEeCCCCCeEEEEeC--CCcEEEEEcccceeee
Q 001176 848 -NDSYVMSAS-GGKVSLFNMMTFKV--------MTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 848 -dg~~la~~s-dg~i~vwd~~~~~~--------~~~~~~~~~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~ 915 (1132)
+|.+||+|+ ||+|+|||+..++. ...+..|.++|.+++|++ ++++|++++. ++.+++|+..+++.+.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999998 99999999865432 234567889999999999 8888877654 6789999999999999
Q ss_pred eeccccCCeeEEEEcCCCCE-EEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-CcEEEE-EeCC
Q 001176 916 KLKGHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV-VHES 992 (1132)
Q Consensus 916 ~l~~h~~~V~~l~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~ 992 (1132)
.+.+|...|++++|+|++.+ +++++.|+.+++||+...+... ......++. ..+.+++|+|+ +.++++ +.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence 99999999999999999875 7789999999999998765332 223333333 67899999997 577777 5799
Q ss_pred eEEEEeC-CCCceeecCCCCCCCCCeEEEEEc---cCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCC
Q 001176 993 QISVYDS-KLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1068 (1132)
Q Consensus 993 ~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s---~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1132)
.|++||+ +++.+..+. +|..++.++.|+ |||++|++++.|++|+|||+++++.+..+..+ .+..
T Consensus 229 ~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---------~~~~ 296 (325)
T d1pgua1 229 KISCFDGKSGEFLKYIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD---------KQQL 296 (325)
T ss_dssp CEEEEETTTCCEEEECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC---------TTCG
T ss_pred ceeeeeecccccccccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec---------CCcc
Confidence 9999999 666666654 345566555555 78999999999999999999999988776522 3433
Q ss_pred CcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1069 HPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1069 ~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
.+..+++.+.++.+|++++.||.|++||+
T Consensus 297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 297 GNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 43333333324568999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.3e-26 Score=246.47 Aligned_cols=268 Identities=21% Similarity=0.308 Sum_probs=218.6
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|...|+|++| ||+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~ 69 (293)
T d1p22a2 14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 69 (293)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--ccceee
Confidence 7789999765 787 699999999999999999887653 6789999999887 678999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---EEEecCCCCCeE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 498 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~~~v~ 498 (1132)
+|+.|+.|++|++..+..... ...+.. ....+.+... .++++..++.+.+||..+... ...+..|...|.
T Consensus 70 s~s~D~~i~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 70 TGSSDSTVRVWDVNTGEMLNT---LIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp EEETTSCEEEEESSSCCEEEE---ECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred ccccccccccccccccccccc---cccccc--cccccccccc--ceeecccccceeEeeccccccccccccccccccccc
Confidence 999999999999998875542 222222 2334455555 689999999999999887553 455677888998
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
.+.+.+ ..+++++.|+.|++||+++.+....+..+...+..+.++ +.++++++. ++.|++||+++.+.+.
T Consensus 143 ~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 143 VVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACLR 212 (293)
T ss_dssp EEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceeee
Confidence 887754 578899999999999999999888888888888887775 568888875 7889999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC---------CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---------MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.+.++.. .+. .+++++.+|++++.||.|++||+.+ ...+..+..|.. .|.+++|+ +.+|++++.
T Consensus 213 ~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 213 VLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp EECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--SSCEEECCS
T ss_pred eecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEEc--CCEEEEEec
Confidence 9888776 554 4667789999999999999999643 345677776644 79999984 678999999
Q ss_pred CCcEEEEE
Q 001176 650 DNGIKILA 657 (1132)
Q Consensus 650 dg~i~iw~ 657 (1132)
||+|++||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.7e-27 Score=253.27 Aligned_cols=279 Identities=11% Similarity=0.118 Sum_probs=218.0
Q ss_pred eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEE
Q 001176 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 521 (1132)
Q Consensus 442 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~ 521 (1132)
...++.||.++|++++|+| |+||+.||+|++||+.++. .+|...|.++++.+. ..+++++.|++++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~---~~~~s~s~D~~v~ 70 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA---QEYSSISWDDTLK 70 (287)
T ss_dssp EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST---TCCEEEETTTEEE
T ss_pred eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC---CeEEEEeeccccc
Confidence 3447899999999999975 7999999999999987643 579999999998653 5689999999999
Q ss_pred EEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEE
Q 001176 522 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 601 (1132)
Q Consensus 522 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1132)
+|++.... ....+..+++++++..++++. +..+.+|+..+++.+..+.... . ..++++++..++
T Consensus 71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 134 (287)
T d1pgua2 71 VNGITKHE-------FGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNS--P--GSAVSLSQNYVA 134 (287)
T ss_dssp ETTEEEEE-------CSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSS--C--EEEEEECSSEEE
T ss_pred cccccccc-------cccceeeeeeccCCceEEEee-----cccceeeeccceeeeeeccccc--e--eeeeeccCccee
Confidence 99875421 234577889999998888764 4568999999999888876543 2 345677888888
Q ss_pred EEEcCC-eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCC
Q 001176 602 AAGDEF-QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 680 (1132)
Q Consensus 602 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1132)
+++.++ .+++|++...+....+... +...+.+++|+|++.+|++|+.||.|++||+.++......+.
T Consensus 135 v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------- 202 (287)
T d1pgua2 135 VGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA----------- 202 (287)
T ss_dssp EEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-----------
T ss_pred eeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeeccccccccccc-----------
Confidence 888664 7999999877666655432 234799999999999999999999999999987632211111
Q ss_pred CCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceE
Q 001176 681 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 760 (1132)
Q Consensus 681 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~ 760 (1132)
T Consensus 203 -------------------------------------------------------------------------------- 202 (287)
T d1pgua2 203 -------------------------------------------------------------------------------- 202 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCe
Q 001176 761 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 840 (1132)
Q Consensus 761 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v 840 (1132)
.|...|.+++|+|++...
T Consensus 203 ------~h~~~v~~~~~~p~~~~~-------------------------------------------------------- 220 (287)
T d1pgua2 203 ------FRTSKINAISWKPAEKGA-------------------------------------------------------- 220 (287)
T ss_dssp ------CCSSCEEEEEECCCC-----------------------------------------------------------
T ss_pred ------ccccccceeeeccccccc--------------------------------------------------------
Confidence 155678888888765411
Q ss_pred eEEEEeeCCCEEEEee-CCeEEEEECCC-CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc
Q 001176 841 ACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 908 (1132)
..+.+++.++++|+ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus 221 --~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 221 --NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred --ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 22345778999998 99999999976 567788889999999999999 65 5788999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=1.1e-26 Score=265.09 Aligned_cols=368 Identities=11% Similarity=0.034 Sum_probs=267.0
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~ 436 (1132)
.++++.+.||+|.|||..+++.+.. +..| ..+..++|||||+++++++.|+.|.+||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 3568899999999999999998764 3334 3699999999999999999999999999988
Q ss_pred CCce--eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE
Q 001176 437 TGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 514 (1132)
Q Consensus 437 ~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 514 (1132)
++.. .......+|.+.+.+.+|+|||+. ++++++.+++|++||..+++.+..+..|...+..+.+.+.
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~--------- 162 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE--------- 162 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence 7642 222233467777888889999994 4578889999999999999999988877655544444332
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 594 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1132)
.....+.++|+|..++.... .++.|.+||..+++............+..++|+
T Consensus 163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred ------------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence 23445778899988776553 477899999988776554443344468889999
Q ss_pred CCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCC---CCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeecc
Q 001176 595 TTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG---GLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 595 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
|+|+++++++ .++.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|+..... .
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----~- 289 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----H- 289 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----C-
T ss_pred CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----c-
Confidence 9999888876 56789999999998888775432 111222333333343333332 25566666543220 0
Q ss_pred ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeec
Q 001176 670 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 749 (1132)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 749 (1132)
T Consensus 290 -------------------------------------------------------------------------------- 289 (432)
T d1qksa2 290 -------------------------------------------------------------------------------- 289 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCccccc
Q 001176 750 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 829 (1132)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 829 (1132)
..+...+....+++++..+++++.++..++|......
T Consensus 290 ----------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------- 326 (432)
T d1qksa2 290 ----------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--------------------------- 326 (432)
T ss_dssp ----------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC---------------------------
T ss_pred ----------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC---------------------------
Confidence 0134567788899999999999999999999653210
Q ss_pred CCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe-----CCCcE
Q 001176 830 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-----EDSSV 903 (1132)
Q Consensus 830 ~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-----~dg~v 903 (1132)
. | ......+++ ||++.+++++ |+++++|++.++. .+..|...+.+++||| ||++|+++. .+|.|
T Consensus 327 --~--~-~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i 396 (432)
T d1qksa2 327 --P--E-AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESAL 396 (432)
T ss_dssp --S--S-HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEE
T ss_pred --C--C-CCeeeEEEE-EechhhcccccCCceEeccccccc---ccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcE
Confidence 0 2 222344555 9999999999 8999999986553 3345777899999999 888775553 46889
Q ss_pred EEEEcccceeeeeeccc
Q 001176 904 QIYNVRVDEVKTKLKGH 920 (1132)
Q Consensus 904 ~iwd~~~~~~~~~l~~h 920 (1132)
.|||..++++..++++.
T Consensus 397 ~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 397 VVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEETTTTEEEEEECCT
T ss_pred EEEECCCceEEeEecCC
Confidence 99999999988887754
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-26 Score=250.34 Aligned_cols=269 Identities=11% Similarity=0.146 Sum_probs=214.0
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
.+++++|. |..+|++++|+| |++|+.||+|++||+.++. .+|...|.+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~ 53 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLD 53 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC------------------------CCCCCCEEEEE
Confidence 46788999 999999999987 8899999999999987643 35999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
+++++ .+++++.|+++++|++... .....+.++++++++. .++++ .++.+.+|+..+++.+..+..
T Consensus 54 ~~~~~-~~~s~s~D~~v~~w~~~~~----------~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 54 NSKAQ-EYSSISWDDTLKVNGITKH----------EFGSQPKVASANNDGF--TAVLT-NDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp CCSTT-CCEEEETTTEEEETTEEEE----------ECSSCEEEEEECSSSE--EEEEE-TTSEEEEEETTTCCEEEEEEC
T ss_pred ecCCC-eEEEEeecccccccccccc----------ccccceeeeeeccCCc--eEEEe-ecccceeeeccceeeeeeccc
Confidence 99765 5788999999999997642 1234577889999887 55555 466789999999998888764
Q ss_pred CCCCeEEEEeeccCCccEEEEEecC-CeEEEEEcCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
+ ..+.++ ++.+ ..+++++.| +.+++|++.......... .+...+++++|+|++++|++++. ++.|++||
T Consensus 120 ~-~~~~~~--~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d 190 (287)
T d1pgua2 120 N-SPGSAV--SLSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD 190 (287)
T ss_dssp S-SCEEEE--EECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred c-ceeeee--eccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----ccccccee
Confidence 3 444444 4443 566666665 579999987665555444 35678999999999999999975 77899999
Q ss_pred CCCCceeee-eccccCCceEEEEEeCC----------CCEEEEEEcCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEc
Q 001176 571 ESEGAIKRT-YSGFRKRSLGVVQFDTT----------RNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 571 ~~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
+.+++.... +.+|.. .|.+++|+|. +.++++|+.|+.|++||+.+ .+.+..+..|. ..|++++|+
T Consensus 191 ~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~~ 267 (287)
T d1pgua2 191 LQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVNNLLWE 267 (287)
T ss_dssp TTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST--TCEEEEEEE
T ss_pred eccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC--CCeEEEEEC
Confidence 999887654 556655 8999999874 46899999999999999976 55666666564 489999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 001176 639 KEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~ 658 (1132)
|++ .|++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCeEEEEEE
Confidence 986 5889999999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.4e-26 Score=260.65 Aligned_cols=342 Identities=15% Similarity=0.185 Sum_probs=219.9
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee------EEEEeCCCCCCCcceE------EEcC-CCCEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRL------RFNK-EGSLL 644 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~------~~s~-~~~~l 644 (1132)
...++|.. .|.++++++ +++++++.|+.|++||..+... ......+. ..+..+ ..+. ++.++
T Consensus 8 ~~~~~H~~-~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 8 NAGKAHDA-DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EESSCSSS-CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEEEEEE
T ss_pred ecCCcccC-ccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeecc--CCceEeeeEeeeccCCCCCcEE
Confidence 34567776 899998864 6899999999999999765431 11222221 122111 1111 34578
Q ss_pred EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 645 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
++++.||.|++|++.......... .+....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~-~~~~~~------------------------------------------------- 112 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVI-FEKLDL------------------------------------------------- 112 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEE-EEEECC-------------------------------------------------
T ss_pred EEEeCCCcEEEEEccCCCceeeee-ccccce-------------------------------------------------
Confidence 899999999999976542111111 100000
Q ss_pred CCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC-----CceEEeecccceeEEEeec
Q 001176 725 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQ 799 (1132)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~vw~~~ 799 (1132)
+....+...+..+++.++ +.++++++.||.+++|++.
T Consensus 113 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~ 154 (393)
T d1sq9a_ 113 --------------------------------------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154 (393)
T ss_dssp --------------------------------------SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred --------------------------------------eeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEee
Confidence 000012233445555543 4678899999999999986
Q ss_pred cccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEe----
Q 001176 800 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---- 874 (1132)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~---- 874 (1132)
......... ...................+ ...+.+++|+||+ +||+|+ |++|++||+.+++++..+
T Consensus 155 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~ 225 (393)
T d1sq9a_ 155 PFADESNSL-------TLNWSPTLELQGTVESPMTP-SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH 225 (393)
T ss_dssp SSSSHHHHT-------TTCCCCEEEEEEEECCSSSS-CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred cCCccccee-------eeeeccceecccceecccCC-CCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc
Confidence 422100000 00000000000111111113 5678999999998 888998 999999999998877654
Q ss_pred --eCCCCCeEEEEEeCCCCCeEEEEeCCCc---EEEEEcccceeeeee-------------ccccCCeeEEEEcCCCCEE
Q 001176 875 --MSPPPAATFLAFHPQDNNIIAIGMEDSS---VQIYNVRVDEVKTKL-------------KGHQNRITGLAFSPTLNAL 936 (1132)
Q Consensus 875 --~~~~~~i~~l~~sp~~~~~lasg~~dg~---v~iwd~~~~~~~~~l-------------~~h~~~V~~l~~spdg~~l 936 (1132)
.+|...|++++|+| ++++|++|+.|++ |++||+.+++.+..+ .+|.+.|++++|+||+++|
T Consensus 226 ~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l 304 (393)
T d1sq9a_ 226 SMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304 (393)
T ss_dssp ---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence 46889999999999 9999999999874 999999998877765 4899999999999999999
Q ss_pred EEEcCCCcEEEEECCCcccccceeeeCCCCCCCCC-CCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCC
Q 001176 937 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL-VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA 1015 (1132)
Q Consensus 937 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~ 1015 (1132)
+|+|.|++|++||+++++ ++..+.+|.... .....++|++++..++.+....+..|+-..+. ..
T Consensus 305 ~S~s~D~~v~vWd~~~g~-----~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------- 369 (393)
T d1sq9a_ 305 CSAGWDGKLRFWDVKTKE-----RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS--GM-------- 369 (393)
T ss_dssp EEEETTSEEEEEETTTTE-----EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB--ST--------
T ss_pred EEECCCCEEEEEECCCCC-----EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCcee--cc--------
Confidence 999999999999999987 444455665221 22335789999987764332222222211111 00
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 1016 PISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 1016 ~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
.....+.|++++.|+.|++|..
T Consensus 370 ------~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 370 ------GADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp ------TCTTSCEEEEEETTTEEEEEEE
T ss_pred ------ccCCCCEEEEEEcCCeEEEEeC
Confidence 0122456889999999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.1e-26 Score=253.65 Aligned_cols=293 Identities=8% Similarity=0.068 Sum_probs=213.5
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
+.++.++ |.+.|++|+|||+|+ +||+|+.||+|+|||+.++..... + ....+|.++|.+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~--~--------------~~~~~h~~~V~~v~f 64 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD--L--------------LQSLRYKHPLLCCNF 64 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE--E--------------EEEEECSSCEEEEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE--E--------------EEecCCCCCEEEEEE
Confidence 3455566 999999999999998 799999999999999987654321 0 012359999999999
Q ss_pred cCC-CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE----EE
Q 001176 414 GPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QY 488 (1132)
Q Consensus 414 spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~----~~ 488 (1132)
+|+ +.+|++|+.||.|++|++..+...... ...+........+.+++. .+++++.|+++++||++++.. ..
T Consensus 65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~ 140 (342)
T d1yfqa_ 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred eCCCCCEEEEcccccceeeeecccccccccc--cccccccccccccccccc--cccccccccccceeeccccccceeeec
Confidence 986 458999999999999999987665432 122333445555666666 799999999999999865432 23
Q ss_pred EecCCC--CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCeEEEEEEc-CCCCEEEEEecCCCC
Q 001176 489 TFEGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYS-ADGTRLFSCGTSKEG 562 (1132)
Q Consensus 489 ~~~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~ 562 (1132)
....+. .......+.+. +..+++++.|+.|++||+....... ........+.+..+. .++..+++++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 214 (342)
T d1yfqa_ 141 NLNSNNTKVKNKIFTMDTN--SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---- 214 (342)
T ss_dssp ESCSSSSSSCCCEEEEEEC--SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----
T ss_pred ccccccccceeeeeeeecc--CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----
Confidence 333332 22334444443 3789999999999999998766533 233344455555554 45677777764
Q ss_pred CCeEEEEeCCCCceee------e---------eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC
Q 001176 563 ESHLVEWNESEGAIKR------T---------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~------~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1132)
++.+.+|+........ . ..+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus 215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY-PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC-CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccc-cceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 7789999876432111 1 112222 68899999999999999999999999999999988875432
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+..++|+|+++++++++.|+.+++|..
T Consensus 294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 294 ---EDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred ---CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 4567889999999999999988887754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.4e-26 Score=251.13 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=191.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
+..+|++.|++|+|+|++++||+|+.||+|+|||++++..........+|.++|.+++|+|++.. +|++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 36789999999999999999999999999999999987765544445579999999999998654 79999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe----cC--CCCeEEEEEEcCCCCEE
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY----DA--PGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~----~~--~~~~v~~~~~s~~~~~l 553 (1132)
++..+........+...+....+... +...+++++.|+++++||++........ .. .........+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 99988887777666555444433322 3378999999999999998765443321 11 12244566777888899
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeee---ccccCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCeeE------EEE
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTY---SGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNML------TTV 623 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~ 623 (1132)
++++. ++.|++||+...+..... ..... .+.+..+ ..++..+++++.||.+.+|+....... ..+
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 98875 788999999876543332 22222 3444444 446678899999999999998653211 111
Q ss_pred e-------CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 624 D-------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 624 ~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
. ...+...|++++|+|++++|++|+.||.|++||+.++
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 1 1123346789999999999999999999999999887
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.4e-25 Score=254.28 Aligned_cols=267 Identities=9% Similarity=0.075 Sum_probs=198.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce---eeeeeeecccCCEEEEEEe---c-CC-CcEEEEEEcC
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFA---H-PN-KQLCIVTCGD 472 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s---~-d~-~~~~l~s~~~ 472 (1132)
.++|.+.|.++++++ +++++|+.|++|+|||..+.+.. ........|...+..+... + ++ ...++++++.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 578999999999864 69999999999999998765431 1111223454444333321 1 11 1126889999
Q ss_pred CCcEEEEECCCCeEEE-----Ee-----cCCCCCeEEEEeeccCC---ccEEEEEecCCeEEEEEcCCCCc---------
Q 001176 473 DKMIKVWDVVAGRKQY-----TF-----EGHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGS--------- 530 (1132)
Q Consensus 473 dg~v~vwd~~~~~~~~-----~~-----~~h~~~v~~i~~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~--------- 530 (1132)
||.|++|++....... .. ..+...+..+++.+..+ +.++++++.||.+++|++.....
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 9999999976433211 11 12455677888776543 47899999999999999853221
Q ss_pred ---------eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec------cccCCceEEEEEeC
Q 001176 531 ---------RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS------GFRKRSLGVVQFDT 595 (1132)
Q Consensus 531 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~~~ 595 (1132)
......+...+.+++|+|++ +|++++. |+.|++||+.+++++..+. +|.. .|.+++|+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~sp 241 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFSP 241 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEECS
T ss_pred ccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccc-eEEEccccc
Confidence 01112334468899999998 7788864 8889999999998876554 4555 899999999
Q ss_pred CCCEEEEEEcCC---eEEEEECCCCeeEEEEeCC-----------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 596 TRNRFLAAGDEF---QIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 596 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++++|++|+.|+ .|++||+.+++.+..+... +|...|++++|+|++++|++++.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 999999999886 5999999999988877521 34557999999999999999999999999999999
Q ss_pred ceeeeeccccccccc
Q 001176 662 VRLLRMLEGRAMDKN 676 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~ 676 (1132)
+++..+.+|...+.
T Consensus 322 -~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 322 -ERITTLNMHCDDIE 335 (393)
T ss_dssp -EEEEEEECCGGGCS
T ss_pred -CEEEEECCcCCccc
Confidence 88889999987654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=7.1e-25 Score=236.79 Aligned_cols=235 Identities=15% Similarity=0.265 Sum_probs=191.3
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+|...|+|++| ||++||+|+.||+|+|||+.+++.+. ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 4568889998764 89999999999999999999988665 68899999999887 566 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
+..+........+......... ....++++..++.+++|+........ ....+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999888777666555544432 22689999999999999998766433 4556677777777654 4566665
Q ss_pred cCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001176 558 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 637 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1132)
. ++.+++||.++++.+..+.++.. .+..+.++ +.++++++.||.|++||+.+.+.+.....+.. .+ ..+
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred C----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--ee--eec
Confidence 4 78899999999999999988876 67666665 57899999999999999999999988876543 33 356
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 638 NKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 638 s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++++.+|++++.||.|++||+.+.
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 678899999999999999998654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=2.4e-25 Score=254.98 Aligned_cols=364 Identities=10% Similarity=0.028 Sum_probs=246.2
Q ss_pred EEccCCC-eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCe
Q 001176 350 DFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428 (1132)
Q Consensus 350 ~~spdg~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~ 428 (1132)
.++.|.+ .++++.+.||+|+|||+.+++.+.+ +..| ..+..++|||||++|++++.|++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~ 84 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR 84 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence 3555544 3457788999999999999988764 3334 46899999999999999999999
Q ss_pred EEEEEecCCCcee--eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC
Q 001176 429 VHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 506 (1132)
Q Consensus 429 i~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 506 (1132)
|++||+.+++... ......+|.+.+.+++|+|||+. +++++..++.+++||..++.++..+.+|...+..+.+.+.+
T Consensus 85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (426)
T d1hzua2 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163 (426)
T ss_dssp EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence 9999999987543 22233467778888999999994 35666789999999999999999888887777666665543
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee-eeccccC
Q 001176 507 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRK 585 (1132)
Q Consensus 507 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~ 585 (1132)
. .. .+.+++++..++.... +.+.+.+++...+.... ....+..
T Consensus 164 ~-~~--------------------------------~i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 164 R-VA--------------------------------AIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp C-EE--------------------------------EEEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCS
T ss_pred c-ee--------------------------------EEEECCCCCEEEEecC---CCCeEEEEEeccccceeeEEeccCC
Confidence 2 12 3344455554444432 24456666655544322 2222333
Q ss_pred CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE-EE--EEeCCCcEEEEEcCCc
Q 001176 586 RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LA--VTTSDNGIKILANSDG 661 (1132)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~--~~~~dg~i~iw~~~~~ 661 (1132)
.+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.|+.+.+|+....
T Consensus 208 -~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 208 -FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp -SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred -ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 688899999999988876 667899999999999888775544333444444433221 11 1223455555543322
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 741 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1132)
.
T Consensus 287 ~------------------------------------------------------------------------------- 287 (426)
T d1hzua2 287 N------------------------------------------------------------------------------- 287 (426)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCC
Q 001176 742 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 821 (1132)
Q Consensus 742 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~ 821 (1132)
+ ...
T Consensus 288 ---------------------------------------------------~-------------------------~~~ 291 (426)
T d1hzua2 288 ---------------------------------------------------H-------------------------PQY 291 (426)
T ss_dssp ---------------------------------------------------C-------------------------TTT
T ss_pred ---------------------------------------------------c-------------------------ccc
Confidence 0 000
Q ss_pred CcCcccccCCCCCCCCCCeeEEEEeeCCCEEEE-------ee-CCeEEEEECCCCeEEEEe---------eCCCCCeEEE
Q 001176 822 SGTLMTNDINESKPTEESAACIALSKNDSYVMS-------AS-GGKVSLFNMMTFKVMTMF---------MSPPPAATFL 884 (1132)
Q Consensus 822 ~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~-------~s-dg~i~vwd~~~~~~~~~~---------~~~~~~i~~l 884 (1132)
.++.. ..+.+ | ...+..++|+||+++|++ ++ +++|+|||+.+++...++ ..|...|.++
T Consensus 292 ~~~~~-~~l~g--~-~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~ 367 (426)
T d1hzua2 292 AWKKV-AELQG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 367 (426)
T ss_dssp BTSEE-EEEEC--S-SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred cceEe-EEEec--C-CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE
Confidence 00000 00122 4 666788889999988885 33 689999999998776554 2456679999
Q ss_pred EEeCCCCCeEE-EE----eCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEE
Q 001176 885 AFHPQDNNIIA-IG----MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV 937 (1132)
Q Consensus 885 ~~sp~~~~~la-sg----~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 937 (1132)
+||| ||++++ ++ +.+|.|+|||..+++...++.++. .++|+|++.+
T Consensus 368 ~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 368 EYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 9999 787654 32 367889999999999999888774 3367776643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.5e-26 Score=259.03 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=159.0
Q ss_pred eeEEEEcc-CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 346 VMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 346 V~~~~~sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
+..-.||| ||++ +|+++ +|.|++||+.++..+. + +|...|.+++|||||++|++++
T Consensus 5 ~~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~ 61 (360)
T d1k32a3 5 KFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHG 61 (360)
T ss_dssp GGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEE
T ss_pred hhcccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEE
Confidence 34578999 9994 66665 5899999998876543 2 5899999999999999998876
Q ss_pred CCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 425 SKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 425 ~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
.+. .|++||.++++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|
T Consensus 62 ~~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (360)
T d1k32a3 62 TREGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135 (360)
T ss_dssp ETTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred cCCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhh
Confidence 553 7999999987643 3678999999999999999 8999999999999999999988888888888888887
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
+|++ .+|+.++.++... + ....++.+++||..+++.......
T Consensus 136 spdg--~~la~~~~~~~~~--------------------------------~----~~~~~~~~~v~d~~~~~~~~~~~~ 177 (360)
T d1k32a3 136 SDNS--RFIAYGFPLKHGE--------------------------------T----DGYVMQAIHVYDMEGRKIFAATTE 177 (360)
T ss_dssp CTTS--CEEEEEEEECSST--------------------------------T----CSCCEEEEEEEETTTTEEEECSCS
T ss_pred ccce--eeeeeeccccccc--------------------------------e----eeccccceeeeccccCceeeeccc
Confidence 6643 5665543222100 0 112355689999988776554443
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
.. .+..++|+|+|++|++++.++.+.+|+.....
T Consensus 178 -~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 178 -NS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp -SS-BEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred -cc-ccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 33 67889999999999999999999999876543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.2e-24 Score=247.91 Aligned_cols=354 Identities=11% Similarity=0.019 Sum_probs=250.5
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE--ec---
Q 001176 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YD--- 535 (1132)
Q Consensus 461 d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~--- 535 (1132)
+..++++++.+.||+|.|||..+++.+.++..+. .+..++|+|+ |+++++++.|+.|++||+.+.+.... +.
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 4444478999999999999999999999998774 6999999885 48999999999999999988765332 22
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc----------CCceEEEEEeCCCCEEEE-EE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFDTTRNRFLA-AG 604 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~-~~ 604 (1132)
.+.+.+.+..|+|||++|++.+. .++.+++||..+++.+..+..+. ......+.++|++..++. ..
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~---~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~ 182 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCCeEEecccCCCCCEEEEEcC---CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence 23345566677889998765442 37889999999999888776542 224566889999987655 55
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCCcceeeeeccccccccccCCCCCC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1132)
.++.|.+||..+.+.......+.+ ..+..++|+|||+++++++. ++.+.+++..++ +....+.......
T Consensus 183 ~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~~-------- 252 (432)
T d1qksa2 183 ETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTP-------- 252 (432)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSB--------
T ss_pred cCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCcccc--------
Confidence 789999999998776554433222 25689999999998877765 557888888776 4433332111000
Q ss_pred CCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEec
Q 001176 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763 (1132)
Q Consensus 684 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 763 (1132)
T Consensus 253 -------------------------------------------------------------------------------- 252 (432)
T d1qksa2 253 -------------------------------------------------------------------------------- 252 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCceEEeec-ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 764 PDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 764 ~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
+............+....+.. .++.+.+|.... .. ... | ...+..
T Consensus 253 ----~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~----------------------~~-----~~~--~-~~~v~~ 298 (432)
T d1qksa2 253 ----HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP----------------------EG-----HPD--N-AWKILD 298 (432)
T ss_dssp ----CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT----------------------TT-----CTT--T-BTSEEE
T ss_pred ----ccCcccceecCCCCceecccccCCceEEeccccc----------------------cc-----ccc--c-ccEEEE
Confidence 111112222222232222222 256677775321 10 111 4 667889
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecccc
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 921 (1132)
..++|++..+++++ +++.++|+..+.. .|.....++++ | +++.+++++.|+.+++|++.++.. +..|.
T Consensus 299 ~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~---l~~~~ 367 (432)
T d1qksa2 299 SFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAG---ITEGQ 367 (432)
T ss_dssp EEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHT---CCSSC
T ss_pred EEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEecccccccc---cCCCC
Confidence 99999999999887 8999999876533 23333445665 8 899999999999999999876643 34577
Q ss_pred CCeeEEEEcCCCCEEEEEc-----CCCcEEEEECCCccc
Q 001176 922 NRITGLAFSPTLNALVSSG-----ADAQLCMWSIDKWEK 955 (1132)
Q Consensus 922 ~~V~~l~~spdg~~l~s~~-----~D~~i~iwd~~~~~~ 955 (1132)
.+|.+++|||||++++.+. .++.|+|||..+.+.
T Consensus 368 ~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 368 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 8899999999999875543 468899999999874
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=6.2e-26 Score=253.98 Aligned_cols=310 Identities=9% Similarity=-0.006 Sum_probs=223.0
Q ss_pred eeecC-CCCCCceecc------CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCC-CcEEEEecCCCccccccceee
Q 001176 315 VSFAG-VAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV-GDISLWEVGSRERLAHKPFKV 386 (1132)
Q Consensus 315 ~~~~~-~g~~~~~~~~------d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~d-g~v~iwd~~~~~~~~~~~~~~ 386 (1132)
-.||| ||+.++.... +...+.. ..+.|...|.+++|||||+.++++|..+ ..|++||+.+++...
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~-~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~------ 80 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYV-LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK------ 80 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBE-EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE------
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcE-EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE------
Confidence 34787 7877775443 3333444 4457999999999999999655555544 379999999887543
Q ss_pred eecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEE
Q 001176 387 WDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466 (1132)
Q Consensus 387 ~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~ 466 (1132)
+.+|...|.+++|+|||++|++++.++.+++|++.+++... .+..|...+.+++|+|||+ +
T Consensus 81 --------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~--~ 141 (360)
T d1k32a3 81 --------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSR--F 141 (360)
T ss_dssp --------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSC--E
T ss_pred --------------eeCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhcccee--e
Confidence 56799999999999999999999999999999999987654 5677889999999999999 5
Q ss_pred EEEE----------cCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc------
Q 001176 467 IVTC----------GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS------ 530 (1132)
Q Consensus 467 l~s~----------~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------ 530 (1132)
|+.+ ..++.+++||+.+++.. .+..|...+..++|+|+ |..|++++.++.+++||......
T Consensus 142 la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spd--g~~l~~~s~~~~~~~~d~~~~~~~~~~~~ 218 (360)
T d1k32a3 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFSFEVVS 218 (360)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTT--SCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred eeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCC--CCEEEEEeCCCceEcccccccceeecccc
Confidence 6643 34557999999888765 44457788888999875 58999999999999998765332
Q ss_pred -eEEecCCCCeEEEEEEcCCCCEEEEEecCCCC-CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC---CEEEEEEc
Q 001176 531 -RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGD 605 (1132)
Q Consensus 531 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~ 605 (1132)
...+..+...+..+.+++++..++.+.....+ ...+..++...+.. ..+..+.. .+..+.+...+ .++++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
T d1k32a3 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLES-SILIYSVPVHGEFAAYYQGAPE 296 (360)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSS-EEEEEECCCCCSHHHHHHCCCC
T ss_pred ceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCC-CceEEEEEecCCCeeEEEecCC
Confidence 12233333444445566776665544321111 12244444444443 22333332 34444444443 45677888
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 606 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++.|++||+.+++..... ..|.+++|+|||++|++++.||.|++||+.++
T Consensus 297 ~~~i~~~d~~~~~~~~~~------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 297 KGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp CEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred CCEEEEEECCCCeEEEec------CCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999987654322 25789999999999999999999999999888
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=4.5e-23 Score=235.86 Aligned_cols=328 Identities=12% Similarity=0.061 Sum_probs=224.4
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee-----ccc
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-----SGF 583 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-----~~~ 583 (1132)
-++++.+.||+|++||+.+++.+..+..+. .+..++|||||+++++++. ++.+++||+.+++..... .+|
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEEEEeCCCCC
Confidence 467888999999999999999988888764 5899999999999999874 778999999988754432 233
Q ss_pred cCCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE-EEEEeCCCcEEEEEcCCc
Q 001176 584 RKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~ 661 (1132)
.. .+.+++|+|||++++++ ..++.+++||..++..+..+..+.. .+..+.+.+++.. .++.+.|+...++.....
T Consensus 108 ~~-~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~ 184 (426)
T d1hzua2 108 RS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 184 (426)
T ss_dssp EE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred cc-eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence 33 45567788999987664 5899999999999999988887654 5666777776654 445566776666654332
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 741 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1132)
.... .+.....
T Consensus 185 ~~i~-~~~~~~~-------------------------------------------------------------------- 195 (426)
T d1hzua2 185 GKVL-LVNYKDI-------------------------------------------------------------------- 195 (426)
T ss_dssp TEEE-EEECSSS--------------------------------------------------------------------
T ss_pred CeEE-EEEeccc--------------------------------------------------------------------
Confidence 1111 1100000
Q ss_pred CceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc-cceeEEEeeccccCCCCCccccccccccccC
Q 001176 742 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQP 820 (1132)
Q Consensus 742 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~ 820 (1132)
..+.+ .. ..+...+..++++|++++++++.. +..+.+++...
T Consensus 196 ~~~~~------------~~-----~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~-------------------- 238 (426)
T d1hzua2 196 DNLTV------------TS-----IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD-------------------- 238 (426)
T ss_dssp SSCEE------------EE-----EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT--------------------
T ss_pred cceee------------EE-----eccCCccEeeeECCCCcEEEeeeecccceeeeeccc--------------------
Confidence 00000 00 114566788999999998877665 46677776532
Q ss_pred CCcCcccccCCCCCCCCCCeeEEEEeeCCCE--EEEe-e-CCeEEEEECCC-------CeEEEEeeCCCCCeEEEEEeCC
Q 001176 821 PSGTLMTNDINESKPTEESAACIALSKNDSY--VMSA-S-GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQ 889 (1132)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~--la~~-s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~ 889 (1132)
+........+ .+ ........+..++.. .+.. + ++.+.+|+... ++...++.+|...+..++|+|
T Consensus 239 --~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP- 313 (426)
T d1hzua2 239 --RRLSALVDVG-KT-PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP- 313 (426)
T ss_dssp --TEEEEEEECS-SC-CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-
T ss_pred --ccEEEEeccC-Cc-ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-
Confidence 2221111111 01 122233444443332 2222 2 67788887654 478889999999999999999
Q ss_pred CCCeEEE-------EeCCCcEEEEEcccceeeeee---------ccccCCeeEEEEcCCCCEEE-EE----cCCCcEEEE
Q 001176 890 DNNIIAI-------GMEDSSVQIYNVRVDEVKTKL---------KGHQNRITGLAFSPTLNALV-SS----GADAQLCMW 948 (1132)
Q Consensus 890 ~~~~las-------g~~dg~v~iwd~~~~~~~~~l---------~~h~~~V~~l~~spdg~~l~-s~----~~D~~i~iw 948 (1132)
++++|++ +..|++|+|||+.+++...++ ..|..+|..++|||||++++ ++ +.++.|++|
T Consensus 314 dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~ 393 (426)
T d1hzua2 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393 (426)
T ss_dssp TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEE
T ss_pred CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEE
Confidence 8999984 556789999999998765443 34666799999999999764 43 357889999
Q ss_pred ECCCccc
Q 001176 949 SIDKWEK 955 (1132)
Q Consensus 949 d~~~~~~ 955 (1132)
|.++.+.
T Consensus 394 D~~T~k~ 400 (426)
T d1hzua2 394 DDKTLKL 400 (426)
T ss_dssp ETTTTEE
T ss_pred ECCCCeE
Confidence 9999873
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=1.1e-20 Score=204.68 Aligned_cols=276 Identities=10% Similarity=0.079 Sum_probs=217.7
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE-EEeCCCeEEEEEec
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 435 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-s~~~dg~i~iwd~~ 435 (1132)
++.++++.|++|.|||+.+++.+.+ + . ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~--i-----------------~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT--I-----------------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE--E-----------------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE--E-----------------E-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4566788999999999999987653 1 1 334578999999999875 66678999999999
Q ss_pred CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001176 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 515 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s 515 (1132)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+ .....+++++++. .+++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecCCC-eeeeeec
Confidence 987655 455554 5689999999986 5677888899999999999988888754 4567788877653 4456677
Q ss_pred cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 516 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
.++.+.+|+..+......+..+ ..+..++++|+++.++++.. ....+.+|+....+.......+. .+..++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred cccceeeeeccccceeeecccC-CCceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeeccc
Confidence 7899999999988777766544 45778999999999988864 35678888888877777666543 567799999
Q ss_pred CCCEEEEEE---cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCcceeeeecc
Q 001176 596 TRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 596 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
++..+++++ .++.|++||..+++.+..+..+. .+.+++|+|||++| ++++.++.|++||+.++ ++...+.
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~~ 283 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATMA 283 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred cccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEEe
Confidence 999887754 34689999999999998887543 47899999999987 56677999999999998 5555553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=1.1e-19 Score=196.83 Aligned_cols=268 Identities=13% Similarity=0.090 Sum_probs=209.1
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 405 (1132)
+..+|..+++.++++.....+..++|||||++++++++.++.|++||+.+++.+.. +..|.
T Consensus 14 v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~~ 74 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAGS 74 (301)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECSS
T ss_pred EEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eeccc
Confidence 34456677889999997788999999999997778888999999999999887653 22233
Q ss_pred cCeEEEEEcCCCCeEEE-EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 406 ISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las-~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
.+..++|++++..+++ +..++.+.+|+..+++... .+. +.....+++|+|++.. +++++..++.+.+|+..++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred -cccccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeecccc
Confidence 5789999999986655 5567889999999876554 333 4457789999999995 5677888999999999999
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
+.+..+..+ ..+..++++++. ..+++++. ++.+.+|+........... ....+..++++++++.++.+..+. ..
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~-~~ 223 (301)
T d1l0qa2 149 AVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK-YF 223 (301)
T ss_dssp EEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS-SC
T ss_pred ceeeecccC-CCceEEEeeccc--cceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccc-ee
Confidence 998888654 457788887754 55655554 4667777766554444443 345678899999999988765432 36
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeeEEEEeC
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
+.|++||+.+++.+..+..+. .+..++|+|||++++ +++.++.|++||+.+++.+.++..
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 789999999999988877644 578999999999875 566899999999999999988864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.6e-19 Score=198.94 Aligned_cols=301 Identities=11% Similarity=0.074 Sum_probs=211.4
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 586 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 586 (1132)
.++++++.|++|++||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999998888776543 456789999999999866542 4778999999999998887765331
Q ss_pred ----ceEEEEEeCCCCEEEEEE------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 587 ----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 587 ----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.+..++|+|+++++++++ .++.+.+||..+++....+.... .+..++|+|||+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 345689999999998875 36789999999999988887643 4788999999999998865
Q ss_pred CcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccc
Q 001176 651 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 730 (1132)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1132)
.+.+||..++ +....+..+..... ....
T Consensus 155 -~~~~~d~~~~-~~~~~~~~~~~~~~--------------------------~~~~------------------------ 182 (337)
T d1pbyb_ 155 -DLHVMDPEAG-TLVEDKPIQSWEAE--------------------------TYAQ------------------------ 182 (337)
T ss_dssp -SEEEEETTTT-EEEEEECSTTTTTT--------------------------TBCC------------------------
T ss_pred -CcceeeeecC-cEEEEeecCCcccc--------------------------ceec------------------------
Confidence 4778999888 44444433221100 0000
Q ss_pred cccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccc
Q 001176 731 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 810 (1132)
Q Consensus 731 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 810 (1132)
+++.. +|.... ..+...+.......+.........++.+.+|+.
T Consensus 183 ~~~~~----------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 226 (337)
T d1pbyb_ 183 PDVLA----------VWNQHE--------------SSGVMATPFYTARKDIDPADPTAYRTGLLTMDL------------ 226 (337)
T ss_dssp CBCCC----------CCCCCT--------------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET------------
T ss_pred CCcce----------eecccc--------------ccceeeeeeeeeeeccceeeecccCccEEEEEc------------
Confidence 01100 000000 000011111222233333444455556666654
Q ss_pred cccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCC
Q 001176 811 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 890 (1132)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~ 890 (1132)
.++......... + ...+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| +
T Consensus 227 ----------~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-d 290 (337)
T d1pbyb_ 227 ----------ETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-D 290 (337)
T ss_dssp ----------TTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-T
T ss_pred ----------CCCcEEEEEecC--C-CcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-C
Confidence 333322222222 3 5677889999999988765 6899999999999998886 567789999999 8
Q ss_pred CCeEEEEeCCCcEEEEEcccceeeeeeccc
Q 001176 891 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 920 (1132)
Q Consensus 891 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 920 (1132)
|++|++++.|+.|+|||..+++.+.+++..
T Consensus 291 G~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence 999999999999999999999998887643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.3e-19 Score=199.59 Aligned_cols=293 Identities=14% Similarity=0.128 Sum_probs=198.3
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCcceeeeeccccccccc
Q 001176 598 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKN 676 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1132)
+++++++.|++|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +....+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~-- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTT--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCc--
Confidence 578999999999999999999999998765545678999999999875 5667899999999988 444433322100
Q ss_pred cCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCC
Q 001176 677 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756 (1132)
Q Consensus 677 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 756 (1132)
T Consensus 79 -------------------------------------------------------------------------------- 78 (337)
T d1pbyb_ 79 -------------------------------------------------------------------------------- 78 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCC
Q 001176 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836 (1132)
Q Consensus 757 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~ 836 (1132)
.+...+..++|+|+++.++++..+.....|..
T Consensus 79 ----------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~-------------------------------------- 110 (337)
T d1pbyb_ 79 ----------ERVKSLFGAALSPDGKTLAIYESPVRLELTHF-------------------------------------- 110 (337)
T ss_dssp ----------EEEECTTCEEECTTSSEEEEEEEEEEECSSCE--------------------------------------
T ss_pred ----------ccccceeeEEEcCCCcEEEEeecCCcceeeec--------------------------------------
Confidence 01223456889999998888776654433311
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
...+..+.+||..+++....+.. ...+..++|+| +++++++++. .+.+||..+++....
T Consensus 111 -----------------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~ 169 (337)
T d1pbyb_ 111 -----------------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVED 169 (337)
T ss_dssp -----------------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEE
T ss_pred -----------------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEE
Confidence 11245566677777666666653 34466677777 6666666543 355677766665555
Q ss_pred eccccCCeeEEEEcCC------------------------CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCC
Q 001176 917 LKGHQNRITGLAFSPT------------------------LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972 (1132)
Q Consensus 917 l~~h~~~V~~l~~spd------------------------g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 972 (1132)
+..+... ....++|+ .......+.++.+.+|+..++......... +. .
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~ 241 (337)
T d1pbyb_ 170 KPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD---V 241 (337)
T ss_dssp ECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---S
T ss_pred eecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---c
Confidence 4432211 11111221 222222334556888998887643322211 11 3
Q ss_pred CceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecc
Q 001176 973 GETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCR 1051 (1132)
Q Consensus 973 ~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~ 1051 (1132)
.+..+++++++.+++.. ++.+++||+ +++.+..... ...+.+++|+|||++|++++.||.|+|||+++++.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred ceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 46778999999987664 589999999 6666665532 56789999999999999999999999999999999988
Q ss_pred cCCC
Q 001176 1052 IGPS 1055 (1132)
Q Consensus 1052 ~~~~ 1055 (1132)
+..+
T Consensus 317 i~~~ 320 (337)
T d1pbyb_ 317 VDLP 320 (337)
T ss_dssp EECG
T ss_pred EECC
Confidence 8643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=3.8e-20 Score=204.92 Aligned_cols=328 Identities=7% Similarity=-0.029 Sum_probs=217.8
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEE-EeCCCcEEEEEcCCcceeeeecc
Q 001176 591 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
++|+++++++++++.++.|.+||+.+++.+.++..+... .+.+++|+|||+++++ +..++.|.+||+.++ +....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeec
Confidence 468899999999999999999999999999988754332 5689999999998754 457899999999988 4443332
Q ss_pred ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeec
Q 001176 670 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 749 (1132)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 749 (1132)
.....
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (346)
T d1jmxb_ 80 LSSVP--------------------------------------------------------------------------- 84 (346)
T ss_dssp SCCST---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 21100
Q ss_pred CCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCccccc
Q 001176 750 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 829 (1132)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 829 (1132)
......+..++|+|||+++++++.+.....|.... ....+.+|+..++......
T Consensus 85 ----------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~ 138 (346)
T d1jmxb_ 85 ----------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPV 138 (346)
T ss_dssp ----------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCS
T ss_pred ----------------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEE
Confidence 00122345688999999888776543322221110 0011223333333322211
Q ss_pred CCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCe-EEEEeCCCcEEEEEc
Q 001176 830 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI-IAIGMEDSSVQIYNV 908 (1132)
Q Consensus 830 ~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~-lasg~~dg~v~iwd~ 908 (1132)
... .. ...+..+.++++++.++. ++.+.+|++.+++.+..+..+ .....+.++| ++.. ++.+..++.+.+++.
T Consensus 139 ~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 212 (346)
T d1jmxb_ 139 RTF-PM-PRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYT 212 (346)
T ss_dssp EEE-EC-CSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEE
T ss_pred Eee-ec-cCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeee
Confidence 100 01 334566777778876655 356899999999998888754 3456677888 4444 444455566666543
Q ss_pred ccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 909 RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 909 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
. ..+.+....++++..+..+.+|++.++......... +. ..+..+.+++++.+++.
T Consensus 213 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~ 268 (346)
T d1jmxb_ 213 I-----------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIY 268 (346)
T ss_dssp E-----------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEE
T ss_pred e-----------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEE
Confidence 2 112234445566667778999999887643322211 11 34678899999999888
Q ss_pred EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCC
Q 001176 989 VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1055 (1132)
Q Consensus 989 ~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~ 1055 (1132)
..++.|.+||. +++.+..... ...+.+++|||||++|++++.||.|+|||+++++.+..+..+
T Consensus 269 ~~~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 269 GVLNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ecCCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 77889999999 6666655532 456899999999999999999999999999999999888644
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=2.5e-19 Score=198.19 Aligned_cols=310 Identities=9% Similarity=-0.024 Sum_probs=212.3
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 506 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
.+++++++++.|++|.+||+.+.+....+.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..+....
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeecccc
Confidence 3559999999999999999999888777764 4556789999999999876653 47889999999999888775433
Q ss_pred CC-----ceEEEEEeCCCCEEEEEE------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 585 KR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 585 ~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
.. .+..++|+|||+++++++ .++.+.+|+..+++....+..+.....+..+.+++++.++++
T Consensus 83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 161 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA- 161 (346)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-
T ss_pred cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe-
Confidence 21 245689999999988765 477899999988776544433322235667788888876654
Q ss_pred eCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCc
Q 001176 648 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 727 (1132)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1132)
++.+.+|+..++ +....+..+.... . .
T Consensus 162 --~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------------~------------------------~ 188 (346)
T d1jmxb_ 162 --GPDIYKMDVKTG-KYTVALPLRNWNR--------------------------K------------------------G 188 (346)
T ss_dssp --SSSEEEECTTTC-CEEEEECSTTCCC--------------------------T------------------------T
T ss_pred --CCcceEEEccCC-CEEEEEecCCCcc--------------------------c------------------------e
Confidence 356889999887 4444443322110 0 0
Q ss_pred cccccccccccc--ccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCC
Q 001176 728 SRLVDVKPRVAE--DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 805 (1132)
Q Consensus 728 ~~~~~~~~~~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 805 (1132)
...+++..+... .++.+.++... ..+.+....+.+...++.+.+|++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~------ 238 (346)
T d1jmxb_ 189 YSAPDVLYFWPHQSPRHEFSMLYTI------------------------ARFKDDKQDPATADLLYGYLSVDLK------ 238 (346)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEE------------------------EEC-------CCCEEEEEEEEEETT------
T ss_pred EEeccccEEEEEecCCCceEeeeee------------------------eeeccCceeEeeccCCceEEEEECC------
Confidence 111222221111 11333332211 1222334445555556667777643
Q ss_pred CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEE
Q 001176 806 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 885 (1132)
Q Consensus 806 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 885 (1132)
++......... | ...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++
T Consensus 239 ----------------~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va 298 (346)
T d1jmxb_ 239 ----------------TGKTHTQEFAD--L-TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVA 298 (346)
T ss_dssp ----------------TCCEEEEEEEE--C-SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEE
T ss_pred ----------------CCceEEEEeec--c-cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence 33322222222 4 667889999999999998888899999999999988887 456799999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC
Q 001176 886 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 923 (1132)
Q Consensus 886 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 923 (1132)
|+| ||++|++++.||.|++||+.+++.+.+++.+.+.
T Consensus 299 ~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 299 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred EcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 999 8999999999999999999999999988755543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=1.2e-17 Score=186.72 Aligned_cols=333 Identities=11% Similarity=-0.005 Sum_probs=222.9
Q ss_pred CCCCcCeEEEEEcCCCCeEEEE-----eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEE------
Q 001176 402 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC------ 470 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~-----~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~------ 470 (1132)
..+.+++.+++++|||+.+++. +..+.|.+||..+++.+. ++..+..+ .++|+|||+ +|+++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCCc
Confidence 4588899999999999998765 234679999999988765 35555433 799999999 55554
Q ss_pred ----cCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEE
Q 001176 471 ----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 546 (1132)
Q Consensus 471 ----~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 546 (1132)
..++.|.+||..+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEE
Confidence 3467899999999998888776655544433221 13567
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 547 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
+++++.++.... +.++.+.+|+....+...... ...++.++|+++.+ ++.+.|+.+.+|+...++.......
T Consensus 133 s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQF--AAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EeCCCcEEEEEE--cCCCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 788887766654 235678899988777655444 34568899998765 5678999999999998887766543
Q ss_pred CC----CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccc
Q 001176 626 DG----GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 701 (1132)
Q Consensus 626 ~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 701 (1132)
.. .......+.+.+++.+ +..+.++.+.+|+..++.. .....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~-------------------------------- 251 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGA-TNKAP-------------------------------- 251 (373)
T ss_pred eccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeE-EEEEe--------------------------------
Confidence 21 1112234555666644 4556788999998776521 11000
Q ss_pred cccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCC
Q 001176 702 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 781 (1132)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 781 (1132)
|+. .........+.|.+
T Consensus 252 ---------------------------------------------~~~------------------~~~~~~~~~~~~~~ 268 (373)
T d2madh_ 252 ---------------------------------------------IDA------------------LSGGRKADTWRPGG 268 (373)
T ss_pred ---------------------------------------------ecc------------------ccCcEEeeeeccCc
Confidence 000 00111122222322
Q ss_pred ceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeE
Q 001176 782 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKV 860 (1132)
Q Consensus 782 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i 860 (1132)
...++.+.++.. ...+..++..+++.. ++.+
T Consensus 269 ~~~~~~~~d~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~v 300 (373)
T d2madh_ 269 WQQVAYLKSSDG------------------------------------------------IYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ceeeEEecCCCe------------------------------------------------EEEecCCCceEEeecCCCeE
Confidence 222222222111 111223344444554 7889
Q ss_pred EEEECCCCeEEEEeeCCCCCeEEEEEeCCCCC--eEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCC
Q 001176 861 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932 (1132)
Q Consensus 861 ~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd 932 (1132)
.+||..+++.+..+. +...+.+++|+| ||+ ++++++.|+.|++||+.+++.+.++..+....+.|++.++
T Consensus 301 ~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 301 TSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999999999988876 667789999999 776 4578899999999999999999999988888888887543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=8.7e-17 Score=179.73 Aligned_cols=200 Identities=9% Similarity=-0.016 Sum_probs=139.4
Q ss_pred CCCCeeEEEEccCCCeEEEEE----cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
+..++.+++++|||++++++. +..+.|.+||..+++.+.+ +..+. ...++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHSG 77 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCC--CccEEEcCCC
Confidence 667899999999999765552 2346799999999987653 22233 2369999999
Q ss_pred CeEEEEe----------CCCeEEEEEecCCCceeeeeeeecccCC-------EEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 418 LMLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 418 ~~las~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~~~-------v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
++|++++ .++.|.+||..+++.... +..+... ...+.|++|++.++++....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence 9999875 357899999999876553 3333332 2558899999965555666778999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCeEEEEEEcCCCCEEE
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~ 554 (1132)
...++...... ...++.+++++. ..+++.+.|+.+.+|+............. ......+.+++++.+++
T Consensus 155 ~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (373)
T d2madh_ 155 QGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred ccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence 88877654443 356777877654 56788999999999999877665543221 12334555666665554
Q ss_pred EEecCCCCCCeEEEEeCCCCc
Q 001176 555 SCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
... ++.+.+|+...+.
T Consensus 230 ~~~-----~~~v~~~~~~~~~ 245 (373)
T d2madh_ 230 PVY-----SGKILQADISAAG 245 (373)
T ss_pred ecC-----CceEEEEEcCCCe
Confidence 432 5567788776554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=5.3e-17 Score=180.08 Aligned_cols=202 Identities=13% Similarity=0.009 Sum_probs=127.5
Q ss_pred EEEEEcCCCCeEEEEe-----CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEE--------EcCCCc
Q 001176 409 NRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--------CGDDKM 475 (1132)
Q Consensus 409 ~~v~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s--------~~~dg~ 475 (1132)
.-.+.+|||+.+++.. .+..|.+||..+++.+. ++..+. +..++|+|||+.+++++ ++.|+.
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~ 79 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDY 79 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence 3346789999987763 35679999999987665 344443 44799999999533322 345788
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|++||+.+++.+..+..+......+. .....++|++++++++.
T Consensus 80 v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~~v 122 (355)
T d2bbkh_ 80 VEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTLLF 122 (355)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCeeEE
Confidence 99999998888776654432221110 11124678899998887
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCC------ceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCC
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKR------SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
+.. ..+..+.+|+..+++.+..+...... ....+.+++++..++... .++.+.+++..... ...
T Consensus 123 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-------~~~ 193 (355)
T d2bbkh_ 123 YQF--SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-------PED 193 (355)
T ss_dssp EEC--SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-------CTT
T ss_pred ecC--CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-------cee
Confidence 754 33567899999999888777654321 112234444444433321 22333333322211 112
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 629 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
...+....+.+++..++.++.++.+++|++..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred cceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence 234566788888889999999999999998776
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.8e-16 Score=170.34 Aligned_cols=281 Identities=13% Similarity=0.145 Sum_probs=189.7
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe-CCCeEEEEEec
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYN 435 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~dg~i~iwd~~ 435 (1132)
.++++++.|++|+||++.....+.. ++ ...|.+.|.+++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~--~~---------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTL--TQ---------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEE--EE---------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEE--EE---------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 3567888999999999976543321 00 224788999999999999986554 58999999998
Q ss_pred CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeEEEE--ecCCCCCeEEEEeeccCCccEEE
Q 001176 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIF 512 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~ 512 (1132)
.............+...+.+++|+|||+ +|++++ .++.|.+|+......... ...+...+.++.+++++ .+++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc--eeee
Confidence 7654432222233455678899999999 555555 577999999877665433 34567778888888765 5565
Q ss_pred EEe-cCCeEEEEEcCCCCceEE------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc----eeeeec
Q 001176 513 STA-IDGKIKAWLYDYLGSRVD------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYS 581 (1132)
Q Consensus 513 s~s-~dg~i~~wd~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~ 581 (1132)
+++ .+..|.+|+......... ..........++|++++..++.... ..+...+|+..... ......
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeee
Confidence 555 566799999877654331 2234456788999999999887653 34556777654322 111111
Q ss_pred c-----ccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeC-CCCCCCcceEEEcCCCCEEEEEeC-CCcE
Q 001176 582 G-----FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTS-DNGI 653 (1132)
Q Consensus 582 ~-----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-dg~i 653 (1132)
. ........+++++++++++... .++.+.+|++........+.. ......+..++|+|||++|++++. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 1 1112456688999999877754 678999998876443322221 111225678999999998877754 6889
Q ss_pred EEEEc--CCc
Q 001176 654 KILAN--SDG 661 (1132)
Q Consensus 654 ~iw~~--~~~ 661 (1132)
++|++ .+|
T Consensus 301 ~v~~id~~tG 310 (333)
T d1ri6a_ 301 SVYEIVGEQG 310 (333)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEECCCC
Confidence 99954 555
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.4e-16 Score=176.59 Aligned_cols=293 Identities=13% Similarity=0.082 Sum_probs=195.6
Q ss_pred CeeEEEEccCCCeEEEEE----cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 345 NVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
++.-.+.+|||++++++. ..+++|.+||..+++.+.+ +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 334446789999765553 3456799999999987653 1222 33479999999988
Q ss_pred EEEe----------CCCeEEEEEecCCCceeeeeeeecc----cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 421 GVAF----------SKHIVHLYTYNPTGELRQHLEIDAH----VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 421 as~~----------~dg~i~iwd~~~~~~~~~~~~l~~h----~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
++++ .|+.|++||..+++..........+ ......++|+|+++.++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 7653 4789999999998866533221111 1234568999999964444556778999999999999
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec------CCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------APGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+..+..+..... . +... ...++.+.|+...++............ .+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~-~---~~~~-~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHI-F---PTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEE-E---EEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceE-e---ecCC-cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 888765432211 1 1111 344555666666666554443333221 12224455677888888887754
Q ss_pred CCCCeEEEEeCCCCceee--eeccccC---------CceEEEEEeCCCCEEEEEEcC----------CeEEEEECCCCee
Q 001176 561 EGESHLVEWNESEGAIKR--TYSGFRK---------RSLGVVQFDTTRNRFLAAGDE----------FQIKFWDMDNMNM 619 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~--~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~ 619 (1132)
++.+++|+...++... ....+.. .....+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 7789999998775422 2211110 123348899999988876543 3699999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCC--EEEEEeCCCcEEEEEcCCcceeeeecccc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDGVRLLRMLEGR 671 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (1132)
+..+.... .+.+++|+|||+ ++++++.|+.|++||..++ +.++.+.++
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~~ 342 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL 342 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeCc
Confidence 88886532 578999999997 4556677999999999999 666666543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.4e-15 Score=166.64 Aligned_cols=281 Identities=12% Similarity=0.144 Sum_probs=190.9
Q ss_pred cCCCCCCceeccCCcc-cceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccc
Q 001176 318 AGVAHTPNVYSQDDLT-KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 318 ~~~g~~~~~~~~d~~~-~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
+++++.+.+|..+... .+.+++++|.+.|.+++|||||++|++++..|+.|++|++..+.......-
T Consensus 10 ~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~------------ 77 (333)
T d1ri6a_ 10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------------ 77 (333)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------------
T ss_pred CCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee------------
Confidence 4556667777766443 356777889999999999999997767777899999999987654321000
Q ss_pred cccccCCCCcCeEEEEEcCCCCeEEEEeC-CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 397 QNALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
...+...+.+++|+|||++|++++. ++.|.+|+......... .....+...+.++.|+||++. .++....+..
T Consensus 78 ----~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~v~~s~d~~~-~~~~~~~~~~ 151 (333)
T d1ri6a_ 78 ----ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV-VDVVEGLDGCHSANISPDNRT-LWVPALKQDR 151 (333)
T ss_dssp ----EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE-EEEECCCTTBCCCEECTTSSE-EEEEEGGGTE
T ss_pred ----ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceec-ccccCCCccceEEEeeeccee-eeccccccce
Confidence 1124456778999999999999875 67899999887654332 234457778899999999994 3444445678
Q ss_pred EEEEECCCCeEEEE------ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE----Eec------CCCC
Q 001176 476 IKVWDVVAGRKQYT------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYD------APGN 539 (1132)
Q Consensus 476 v~vwd~~~~~~~~~------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~------~~~~ 539 (1132)
|.+|+......... ..........++|++.+. ....+....+...+|+........ ... ....
T Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (333)
T d1ri6a_ 152 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 230 (333)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred eeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce-eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence 99999876543221 122445567888877553 334455567788888876543322 111 1223
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc--cCCceEEEEEeCCCCEEEEEE-cCCeEEEE--EC
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF--RKRSLGVVQFDTTRNRFLAAG-DEFQIKFW--DM 614 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~ 614 (1132)
....+++++++++++.... ..+.+.+|++...........+ ....+..++|+|||++|++++ .++.|++| |.
T Consensus 231 ~~~~~~~s~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 231 WAADIHITPDGRHLYACDR---TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cceeEEEecccCceeeecc---cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 5678899999999887764 4667899988755433332221 122567799999999988776 56889998 55
Q ss_pred CCCeeE
Q 001176 615 DNMNML 620 (1132)
Q Consensus 615 ~~~~~~ 620 (1132)
.+|++.
T Consensus 308 ~tG~l~ 313 (333)
T d1ri6a_ 308 EQGLLH 313 (333)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 666543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=2.1e-13 Score=156.92 Aligned_cols=220 Identities=10% Similarity=0.068 Sum_probs=139.9
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC-
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS- 425 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~- 425 (1132)
..+.|++|++ ++.. .|+.+.+||+.+++.... +....+..|...|.++.|||||++|+.++.
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence 3578999997 5654 478999999999976421 111225678889999999999999998853
Q ss_pred --------CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC----
Q 001176 426 --------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---- 493 (1132)
Q Consensus 426 --------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---- 493 (1132)
++.+.+||+.+++.. .+..|...+..+.|||||+ .||.. .++.+++|+..+++..+....+
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence 567899999987533 4677889999999999999 56665 4779999999988766543221
Q ss_pred --------------CCCeEEEEeeccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 494 --------------EAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 494 --------------~~~v~~i~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.+....+.|+|+ |+.|+....|.+ +..|.+...... .........+.+...+..
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~wSPD--Gk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------ 224 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------ 224 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC------
T ss_pred ccccccceeeeeeecCCccccEECCC--CCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc------
Confidence 223455678774 478888776544 555543211100 001112222222222211
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccc----------cCCceEEEEEeCCCCEEEEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~ 603 (1132)
..+..+.+|++..+........+ ....+..+.|.+++..++..
T Consensus 225 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 277 (470)
T d2bgra1 225 --NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (470)
T ss_dssp --CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred --CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence 12345788888776543322111 11135668888888665553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=1.2e-13 Score=153.15 Aligned_cols=287 Identities=10% Similarity=-0.007 Sum_probs=189.6
Q ss_pred CCCeeEEEEccCCCeEEE--EEcCCCc--EEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 343 GSNVMSMDFHPQQQTILL--VGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla--~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
.+....++.+++++...+ ....++. |.+||..+++.+.. +.++..+ .++|+|||+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg~ 77 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSGS 77 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTSS
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCCC
Confidence 345566677888875333 3444454 66668888876653 2223333 589999999
Q ss_pred eEEEEe----------CCCeEEEEEecCCCceeeeeeeeccc-------CCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 419 MLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHV-------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 419 ~las~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~-------~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
.|++++ .|+.|.+||..+++.+.. +..+. .....++|+|||+. ++++...++.+.+||+
T Consensus 78 ~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSV 153 (368)
T ss_dssp CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEE
T ss_pred EEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEEC
Confidence 998864 367899999999876653 22221 12346899999995 2334446899999999
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe------cCCCCeEEEEEEcCCCCEEEE
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY------DAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
.+++.+..+..+..... .+.+. ..++..+.||.+.+|++......... ..+...+..+.+.+++..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 154 PGASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp TTTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred CCCcEeEEeeccCcceE----ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 99999988876554322 12222 56777888999999988766554332 223334556778888776665
Q ss_pred EecCCCCCCeEEEEeCCCCceeeee--cccc---------CCceEEEEEeCCCCEEEEEEcC---------CeEEEEECC
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTY--SGFR---------KRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMD 615 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~--~~~~---------~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~ 615 (1132)
. .+.+++++...+...... .... ......+++++++..++....+ ..|.+||..
T Consensus 229 ~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~ 302 (368)
T d1mdah_ 229 V------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp B------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred c------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence 4 334666666554433211 1110 0012347889999887765322 359999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEcCCCCE--EEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 616 NMNMLTTVDADGGLPASPRLRFNKEGSL--LAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
+++.+..+... ..+.+++|+|||+. ++++..++.|++||..++ +..+.+.
T Consensus 303 t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 303 VGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp SCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 99988877643 25789999999973 456667899999999999 5565554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.55 E-value=5.2e-15 Score=161.45 Aligned_cols=329 Identities=12% Similarity=0.044 Sum_probs=202.8
Q ss_pred EEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
+.++|++.+|.|.+||+.+++.++++.- |+|.+. . ..|..+.+.+++. ..........|.......
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t 77 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISMT 77 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEE
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCccee
Confidence 4688999999999999999999988742 444331 1 1111111111110 011111122334455556
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCE--EEEEEcCC---------------
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGDEF--------------- 607 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg--------------- 607 (1132)
..+|||++|++... .+.+|.++|+.+++....+.......+..++|+|+++. ++..+++.
T Consensus 78 ~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 78 DGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp TTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred cccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 66899999988753 57789999999999888776544447889999999974 44444332
Q ss_pred --eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc-EEEEEcCCcceeeeeccccccccccCCCCCCC
Q 001176 608 --QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG-IKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 684 (1132)
Q Consensus 608 --~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1132)
.+..+|..+.+....+.... ....++|+|+|+++++++.+.. +..++..+. ...
T Consensus 155 ~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~------------------- 211 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR------------------- 211 (441)
T ss_dssp EEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB-------------------
T ss_pred cceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCc-ceE-------------------
Confidence 23568888888887776553 4688999999999988876522 111111111 000
Q ss_pred CCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecC
Q 001176 685 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 764 (1132)
Q Consensus 685 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 764 (1132)
..+.+.+..
T Consensus 212 ---------------------------------------------------------d~i~v~n~p-------------- 220 (441)
T d1qnia2 212 ---------------------------------------------------------DWVVVFNVE-------------- 220 (441)
T ss_dssp ---------------------------------------------------------CEEEEEEHH--------------
T ss_pred ---------------------------------------------------------EEEEeCCcc--------------
Confidence 111111111
Q ss_pred CcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 765 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 765 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
..+.++++|+++.. +.++.+.++... ...++.. ++. ......++
T Consensus 221 --------~~~~~~~dGk~~~v-~~~~v~vvd~~~----------------------~~~v~~~-IPv----gksPhGv~ 264 (441)
T d1qnia2 221 --------RIAAAVKAGNFKTI-GDSKVPVVDGRG----------------------ESEFTRY-IPV----PKNPHGLN 264 (441)
T ss_dssp --------HHHHHHHTTCCBCC-TTCCCCEEECSS----------------------SCSSEEE-ECC----BSSCCCEE
T ss_pred --------ceEEEecCCCEEEe-CCCCcEEEEccc----------------------CCceEEE-EeC----CCCccCce
Confidence 12335567775544 334455554321 1111111 122 22346799
Q ss_pred EeeCCCEEEEee--CCeEEEEECCCCeEE--------EEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 845 LSKNDSYVMSAS--GGKVSLFNMMTFKVM--------TMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 845 ~s~dg~~la~~s--dg~i~vwd~~~~~~~--------~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
++|||+++++++ +++|.+||+++.... ..+.+ ..-.....+|++ +|..+.+...|..|..|++...
T Consensus 265 vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~ 343 (441)
T d1qnia2 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADA 343 (441)
T ss_dssp ECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHH
T ss_pred ECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchh
Confidence 999999988776 899999998753210 11111 112245568999 8888999999999999998521
Q ss_pred ----------eeeeee-----ccccCCeeEEEEcCCCCEEEEEcC
Q 001176 912 ----------EVKTKL-----KGHQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 912 ----------~~~~~l-----~~h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
..+.++ .+|...+.+.+++|||++|++++.
T Consensus 344 ~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 344 IKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp HHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred hhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 233333 578888888899999999999953
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=6.9e-13 Score=146.99 Aligned_cols=291 Identities=7% Similarity=-0.066 Sum_probs=178.0
Q ss_pred eEEEEEEcCCCCEEEE-EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----------cCCe
Q 001176 540 WCTMMAYSADGTRLFS-CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQ 608 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~-~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~ 608 (1132)
....++..++++.... .....++...+++||..+++.+....++.. ..++|+|||+++++.+ .|+.
T Consensus 21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---~~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL---SLAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT---CEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC---CcceECCCCCEEEEEcccCccccccccCCe
Confidence 3344456778876432 222344566789999999999988877654 2588999999988764 3678
Q ss_pred EEEEECCCCeeEEEEeCCCCC-----CCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccccCCCCC
Q 001176 609 IKFWDMDNMNMLTTVDADGGL-----PASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 682 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1132)
|++||..+++.+..+..+... .....++|+|||++|+++. .++.+.+||+.++ +....+..+.....
T Consensus 98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~------ 170 (368)
T d1mdah_ 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA-SDDQLTKSASCFHI------ 170 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT-EEEEEEECSSCCCC------
T ss_pred EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cEeEEeeccCcceE------
Confidence 999999999999888654321 1245799999999998776 5799999999988 44444332210000
Q ss_pred CCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEe
Q 001176 683 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 762 (1132)
Q Consensus 683 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 762 (1132)
.
T Consensus 171 -----------------------------------------------~-------------------------------- 171 (368)
T d1mdah_ 171 -----------------------------------------------H-------------------------------- 171 (368)
T ss_dssp -----------------------------------------------E--------------------------------
T ss_pred -----------------------------------------------c--------------------------------
Confidence 0
Q ss_pred cCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 763 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 763 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
+......+++++||+.++....++....|.... . .... + ...+..
T Consensus 172 -----~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~---------------------~------~~~~--~-~~~~~~ 216 (368)
T d1mdah_ 172 -----PGAAATHYLGSCPASLAASDLAAAPAAAGIVGA---------------------Q------CTGA--Q-NCSSQA 216 (368)
T ss_dssp -----EEETTEEECCCCTTSCEEEECCSSCCCCEECCC---------------------C------SCTT--S-CBCSCC
T ss_pred -----cCCCceEEEEcCCCCEEEEEecCCceeeeeeec---------------------c------cccc--c-ccceee
Confidence 011112233444444333332222222111000 0 0000 1 233345
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCCeEEEEe--eCCC----------CCeEEEEEeCCCCCeEEEEeCC---------C
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMF--MSPP----------PAATFLAFHPQDNNIIAIGMED---------S 901 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~~~----------~~i~~l~~sp~~~~~lasg~~d---------g 901 (1132)
+.+.+++..+.+. ++.+.+++.......... ..+. .....+++++ ++..++....+ .
T Consensus 217 ~~~~~~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~ 294 (368)
T d1mdah_ 217 AQANYPGMLVWAV-ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAE 294 (368)
T ss_dssp EEETTTTEEEECB-SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEE
T ss_pred cccccCcEEEEec-CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCc
Confidence 5666666544432 455566665544332211 1111 1234588898 55555444322 3
Q ss_pred cEEEEEcccceeeeeeccccCCeeEEEEcCCCCE--EEEEcCCCcEEEEECCCccccc
Q 001176 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA--LVSSGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 902 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l~s~~~D~~i~iwd~~~~~~~~ 957 (1132)
.|.+||..+++.+..+. +...+.+++|+|||+. ++++..|++|++||..+++.+.
T Consensus 295 ~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~ 351 (368)
T d1mdah_ 295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred eEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence 59999999999888876 4467899999999973 5677889999999999988544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.51 E-value=1.2e-12 Score=150.39 Aligned_cols=144 Identities=13% Similarity=-0.028 Sum_probs=107.6
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeee--eeeecccCCEEEEEEecCCCcEEEEEEc---------CCCcEE
Q 001176 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--LEIDAHVGGVNDIAFAHPNKQLCIVTCG---------DDKMIK 477 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--~~l~~h~~~v~~v~~s~d~~~~~l~s~~---------~dg~v~ 477 (1132)
..+.|.+|++++.. .++.+.+||+.+++..... ..+..|...|.++.|||||+ +|+.++ .++.+.
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~--~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS--EEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC--EEEEEECCcceeeeccCceEE
Confidence 35789999988764 5788999999998764321 23455667899999999999 556553 356889
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CC
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GN 539 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------~~ 539 (1132)
+||+.+++. ..+..|...+..+.|+|++ +.++.. .++.+.+|+..++......... .+
T Consensus 96 l~d~~~~~~-~~l~~~~~~~~~~~~SPDG--~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~ 171 (470)
T d2bgra1 96 IYDLNKRQL-ITEERIPNNTQWVTWSPVG--HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (470)
T ss_dssp EEETTTTEE-CCSSCCCTTEEEEEECSST--TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCCCcc-cccccCCccccccccccCc--ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence 999998874 5688899999999998865 777774 5788999998877665432211 12
Q ss_pred eEEEEEEcCCCCEEEEEecCC
Q 001176 540 WCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
....+.|||||++|+....+.
T Consensus 172 ~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 172 AYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp SSBCEEECTTSSEEEEEEEEC
T ss_pred CccccEECCCCCccceeEecC
Confidence 235678999999999887543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.35 E-value=1.9e-12 Score=141.03 Aligned_cols=243 Identities=10% Similarity=-0.053 Sum_probs=162.3
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCC--eEEEEeCCC----------
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNN--IIAIGMEDS---------- 901 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~--~lasg~~dg---------- 901 (1132)
........++|||++|++.. +++|.++|+.+++....+.- +...+..++|+| +++ +++..+.+.
T Consensus 71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~ 149 (441)
T d1qnia2 71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDF 149 (441)
T ss_dssp CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCC
T ss_pred CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCccccc
Confidence 44566667789999998886 68999999999998887764 467799999999 666 444444332
Q ss_pred -------cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCC-cEEEEECCCcccccceeeeCCCCCCCCCCC
Q 001176 902 -------SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA-QLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 973 (1132)
Q Consensus 902 -------~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1132)
.+..+|..+.+...++... +....++|+|||+++++.+.+. .+..++..+.+........ ..
T Consensus 150 ~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~---------n~ 219 (441)
T d1qnia2 150 SLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF---------NV 219 (441)
T ss_dssp CGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE---------EH
T ss_pred ccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC---------Cc
Confidence 2345777777777666543 4578899999999998877553 3333333333222111111 11
Q ss_pred ceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEE-EEEecCCcEEEEeCCCcceecc
Q 001176 974 ETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLV-YAGFCDGAIGVFDAETLRFRCR 1051 (1132)
Q Consensus 974 v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l-as~~~dg~i~vwd~~~~~~~~~ 1051 (1132)
...++++++|+++.++.++.+.+++. ..+.+..+..+ .....+.+||||+++ +++..+++|.|||+++....
T Consensus 220 p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~-- 293 (441)
T d1qnia2 220 ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL-- 293 (441)
T ss_dssp HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--
T ss_pred cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH--
Confidence 23445688999887777788888877 44555555432 335679999999987 45678999999999864421
Q ss_pred cCCCccccccccC---CCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1052 IGPSAYIPTYAVS---SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1052 ~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
+.... -+..... ...--++..+|++ +++.+.+...|..|..|++.
T Consensus 294 ~~~~~-~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 294 FEDKI-ELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp TTTSS-CGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHH
T ss_pred hhccC-CcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccc
Confidence 11000 0001111 1123456789999 78888999999999999985
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.18 E-value=1.8e-09 Score=117.82 Aligned_cols=255 Identities=13% Similarity=0.085 Sum_probs=150.5
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCC-CeEEEEe-eCCCCCeEEEEEeCCCCCe--EEEEe-CCCcEEEEEcccc
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMT-FKVMTMF-MSPPPAATFLAFHPQDNNI--IAIGM-EDSSVQIYNVRVD 911 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~-~~~~~~i~~l~~sp~~~~~--lasg~-~dg~v~iwd~~~~ 911 (1132)
...+.-++|++|+++|.++..+.+..|.+.. +...... .........+++++ +++. ++++. ..++|..+.+...
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCC
Confidence 4456779999999999988877888887654 2222221 12234466788888 6663 33332 2355655543211
Q ss_pred -ee---------------eee-eccccCCeeEEEEcCCCCEEEEEcC-CCcEEEEECCCccccc-ceeeeCCCCCCCCCC
Q 001176 912 -EV---------------KTK-LKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLK-SRFIQAPAGRQSPLV 972 (1132)
Q Consensus 912 -~~---------------~~~-l~~h~~~V~~l~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~ 972 (1132)
.. ... -......+.++.|+|||+++++++. ...|.+|+......+. ........ +..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~----~g~ 193 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD----PGD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS----TTC
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC----CCC
Confidence 00 000 1112234779999999998887753 4578888765433221 11111111 114
Q ss_pred CceeEEECCCCcEEEEE--eCCeEEEEeCCCCcee---e------cCC--------CCCCCCCeEEEEEccCCCEEEEEe
Q 001176 973 GETKVQFHNDQTHLLVV--HESQISVYDSKLECSR---S------WSP--------KDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 973 ~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~---~------~~~--------~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
....++|+|+|+++.+. .++.|.+|+.+..... . ... ...+......+.++|||++|+++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 67899999999999885 4688999998332211 1 000 001122356789999999998874
Q ss_pred c-C-----CcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEE-eCCCcEEEEecCCCc
Q 001176 1034 C-D-----GAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG-MSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1034 ~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~Dg~i~vW~~~~~~ 1101 (1132)
. + +.|..|++.....+.... ...........+.+++++|.+|++|+++ ..++.|.+|++....
T Consensus 274 r~~~~~~~~~i~~~~~~~~g~~~~~~-----~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 274 RANKFELQGYIAGFKLRDCGSIEKQL-----FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEE-----EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ccCCCccceEEEEEEecCCCceeeEe-----EeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 3 2 237778776533222111 0011123345667799998677866655 577999999986654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.12 E-value=2.5e-08 Score=105.59 Aligned_cols=244 Identities=9% Similarity=0.025 Sum_probs=163.7
Q ss_pred CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 330 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 330 d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+..+.+++.++.....+..++++|||+ ++++...+++|..|+....... +......+.
T Consensus 14 ~~~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~ 71 (302)
T d2p4oa1 14 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVS 71 (302)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEE
T ss_pred cCCcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcc
Confidence 344566677776555799999999998 7889888999988886543211 223556799
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+++|++||+++++...++.+..|+............-.........+++.++++ ++++.+.++.+..+|...+.....
T Consensus 72 gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~ 149 (302)
T d2p4oa1 72 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 149 (302)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeE
Confidence 999999999999988888888888776443222111123455688999999998 788888899999999887764332
Q ss_pred ec----------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 490 FE----------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 490 ~~----------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
.. ........+.+. + +.++++.+..+.|..++........ ...........+++.++|++.++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~ngi~~~--~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~ 226 (302)
T d2p4oa1 150 LEHPMLARSNSESVFPAANGLKRF--G-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH 226 (302)
T ss_dssp EECGGGSCSSTTCCSCSEEEEEEE--T-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred ecCCccceeeccCccccccccccc--C-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc
Confidence 21 112234555553 2 2577777888999988877654322 1111233455799999999766654
Q ss_pred cCCCCCCeEEEEeCCCCceeeee--ccccCCceEEEEE---eCCCCEEEEEEcC
Q 001176 558 TSKEGESHLVEWNESEGAIKRTY--SGFRKRSLGVVQF---DTTRNRFLAAGDE 606 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~---~~~~~~l~~~~~d 606 (1132)
. ++.|..++.. ++..... ..... ..++++| ++|++.|+.++..
T Consensus 227 ~----~~~V~~i~p~-G~~~~~~~~~~~~~-~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 227 I----YNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp T----TCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECT
T ss_pred C----CCcEEEECCC-CCEEEEEecCCCCC-CceEEEEcCCCCCCCEEEEECCC
Confidence 3 5679888876 4432222 22222 5788999 6677888776543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.09 E-value=6.5e-08 Score=105.17 Aligned_cols=162 Identities=7% Similarity=0.096 Sum_probs=101.1
Q ss_pred cceEEEEEecCCceEEeecc-cceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 770 SKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
..+.+++|+|||+++++... ...|.+|+..... .... ......... ......++|+||
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g-----~~~~---------------~~~~~~~~~-g~gPr~i~f~pd 203 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASG-----EVEL---------------VGSVDAPDP-GDHPRWVAMHPT 203 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----CEEE---------------EEEEECSST-TCCEEEEEECTT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCC-----ceee---------------ccceeecCC-CCceEEEEECCC
Confidence 34679999999998887754 3567777653211 1000 000000012 456788999999
Q ss_pred CCEEEEee--CCeEEEEECCCCeEEEE-----ee--------------CCCCCeEEEEEeCCCCCeEEEEeC-C-----C
Q 001176 849 DSYVMSAS--GGKVSLFNMMTFKVMTM-----FM--------------SPPPAATFLAFHPQDNNIIAIGME-D-----S 901 (1132)
Q Consensus 849 g~~la~~s--dg~i~vwd~~~~~~~~~-----~~--------------~~~~~i~~l~~sp~~~~~lasg~~-d-----g 901 (1132)
++++.+.. +++|.+|++...+.... .. .+......++++| +|++|+++.. + +
T Consensus 204 g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~ 282 (365)
T d1jofa_ 204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQG 282 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCC
T ss_pred CceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccce
Confidence 99987776 78999999876543211 11 0112356789999 8888877642 2 2
Q ss_pred cEEEEEcccceeee------eeccccCCeeEEEEcC-CCCEEEEE-cCCCcEEEEECCCc
Q 001176 902 SVQIYNVRVDEVKT------KLKGHQNRITGLAFSP-TLNALVSS-GADAQLCMWSIDKW 953 (1132)
Q Consensus 902 ~v~iwd~~~~~~~~------~l~~h~~~V~~l~~sp-dg~~l~s~-~~D~~i~iwd~~~~ 953 (1132)
.|..|++.....+. ..........+++++| +|++|+.+ ..++.|.+|+++..
T Consensus 283 ~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 37777765432111 1122334567899998 88987766 46789999988654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.8e-08 Score=102.40 Aligned_cols=222 Identities=10% Similarity=0.092 Sum_probs=134.3
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCC---eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE-
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKH---IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV- 478 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v- 478 (1132)
.+...+...+|||||++||...... .+.+.+..++... .+..+.+......|+|+|+.+ +.....++...+
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLY 110 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEE
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCcccee
Confidence 3566788999999999999875433 4666666665432 244577888999999999952 333333333333
Q ss_pred -EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE--EEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 -WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA--WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 -wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~--wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
+....... ..............+++... ..+++...++...+ .++..... ..............|+|+++.++.
T Consensus 111 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~ 187 (269)
T d2hqsa1 111 VMDLASGQI-RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM 187 (269)
T ss_dssp EEETTTCCE-EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEE
T ss_pred ecccccccc-eeeeeccccccccccccccc-cceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEE
Confidence 33222322 22223333344444544432 45555555665444 45444332 334445567788899999999988
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
.... .+...+.+.+...+.... +.. .. ......|+|||+.|+..+. ...|+++++..+.... +.... ..+
T Consensus 188 ~~~~-~~~~~i~~~~~~~~~~~~-~~~-~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~ 260 (269)
T d2hqsa1 188 VSSN-GGQQHIAKQDLATGGVQV-LSS-TF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQV 260 (269)
T ss_dssp EEEC-SSCEEEEEEETTTCCEEE-CCC-SS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEE
T ss_pred Eeec-CCceeeeEeecccccceE-eec-Cc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcE
Confidence 7643 234556666766555432 222 22 4566889999999886553 3568999998776544 33332 256
Q ss_pred ceEEEcC
Q 001176 633 PRLRFNK 639 (1132)
Q Consensus 633 ~~~~~s~ 639 (1132)
...+|+|
T Consensus 261 ~~p~WSP 267 (269)
T d2hqsa1 261 KFPAWSP 267 (269)
T ss_dssp EEEEECC
T ss_pred EeEEeCC
Confidence 7788987
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.1e-07 Score=98.79 Aligned_cols=241 Identities=10% Similarity=0.061 Sum_probs=148.4
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCc--EEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
+|..|.........+.+...+...+|||||++|+++....+. +.+.+..++.... +..
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 80 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 80 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EEC
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eee
Confidence 444443334444445577889999999999987666655443 4444555444321 344
Q ss_pred CCcCeEEEEEcCCCCeEEEEeC-CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWD 480 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd 480 (1132)
+.+.+....|||||+.++.... ++...++.......... ....+........+++++.. .+++...++ .|.+.+
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEE
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccccce--eeeecccccccccccccccc-ceecccccCCceEeeee
Confidence 7778899999999999887654 33333333332221111 22334455566778888875 455555565 455556
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
+..+.. ..+..+........|+|++ ..++.. ...+...+|..+...................|||||++|+..+..
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 158 INGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp TTSSCC-EECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred cccccc-eeeeccccccccccccccc--ceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC
Confidence 555543 3444556666677787755 555544 445566666555554445555556667788999999999866532
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
.+...|+++++..+...+ +..... .+...+|+|
T Consensus 235 -~~~~~l~~~~~dg~~~~~-lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 235 -GMGSVLNLVSTDGRFKAR-LPATDG-QVKFPAWSP 267 (269)
T ss_dssp -TTEEEEEEEETTSCCEEE-CCCSSS-EEEEEEECC
T ss_pred -CCCcEEEEEECCCCCEEE-EeCCCC-cEEeEEeCC
Confidence 345679999998766543 443333 677788988
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.1e-07 Score=106.78 Aligned_cols=353 Identities=10% Similarity=0.041 Sum_probs=192.8
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc--CCceEEEEEeCCCCEEEEEE---------cCCeEEEE
Q 001176 544 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAG---------DEFQIKFW 612 (1132)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---------~dg~i~iw 612 (1132)
..|.+++.++.. +.++.|.+||+.+++....+.... .-.+....|+||+++++... ..+.+.++
T Consensus 22 ~~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence 357788876653 235679999999887544333322 22466788999999988764 35678999
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccc
Q 001176 613 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 692 (1132)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1132)
|+.++..............+....|||||+.||... ++.|.+.+..++.....+..+....+.
T Consensus 97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~---------------- 159 (465)
T d1xfda1 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIY---------------- 159 (465)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEE----------------
T ss_pred EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceee----------------
Confidence 999887655433333334567789999999998876 567888777665221111111100000
Q ss_pred cCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccce
Q 001176 693 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 772 (1132)
Q Consensus 693 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i 772 (1132)
. .+.-|-... .-...-
T Consensus 160 ---------------------------------------------n----G~~d~vyee---------------e~~~~~ 175 (465)
T d1xfda1 160 ---------------------------------------------N----GLSDWLYEE---------------EILKTH 175 (465)
T ss_dssp ---------------------------------------------E----EECCHHHHH---------------TTSSSS
T ss_pred ---------------------------------------------c----cccchhhhh---------------hhcccc
Confidence 0 000000000 000112
Q ss_pred EEEEEecCCceEEeeccc-ceeEEEeecccc--CCC---------CCccccccccccccCCCcCcccccCCCCC---CCC
Q 001176 773 VRLIYTNSGLSLLALASN-AVHKLWKWQRTE--RNP---------SGKATANVAPQLWQPPSGTLMTNDINESK---PTE 837 (1132)
Q Consensus 773 ~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~--~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---h~~ 837 (1132)
..+.|||||++|+....| ..+..+.+.... ..+ .|.......+.++|++++........... . .
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~-~ 254 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR-E 254 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS-S
T ss_pred ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc-c
Confidence 467789999988876543 556666553211 111 11112222345667766543322221100 1 2
Q ss_pred CCeeEEEEeeCCCEEEEeeC-----CeEEEEECCCCeEEEEeeCCC-CCe----EEEEEeCCCCCeEEE---EeCCC--c
Q 001176 838 ESAACIALSKNDSYVMSASG-----GKVSLFNMMTFKVMTMFMSPP-PAA----TFLAFHPQDNNIIAI---GMEDS--S 902 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sd-----g~i~vwd~~~~~~~~~~~~~~-~~i----~~l~~sp~~~~~las---g~~dg--~ 902 (1132)
.-+..+.|++|+++++...+ ..|.++|..++++...+.... +.| ....|+| +|+.++. ...+| .
T Consensus 255 ~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ 333 (465)
T d1xfda1 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGK 333 (465)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSC
T ss_pred ceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCc
Confidence 34678899999987776642 248899999998765554322 222 3467899 6654322 22233 3
Q ss_pred EEEEEcc------cceeeeeeccccCCeeEE-EEcCCCCEEE-EEcCCC--cEEEEEC--CCcccccceeeeCCCCCCCC
Q 001176 903 VQIYNVR------VDEVKTKLKGHQNRITGL-AFSPTLNALV-SSGADA--QLCMWSI--DKWEKLKSRFIQAPAGRQSP 970 (1132)
Q Consensus 903 v~iwd~~------~~~~~~~l~~h~~~V~~l-~~spdg~~l~-s~~~D~--~i~iwd~--~~~~~~~~~~~~~~~~~~~~ 970 (1132)
++..++. .++.+..+....-.|..+ +|..+++.+. ++..++ .-.+|.+ ..+.. ..++.......
T Consensus 334 ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~-- 409 (465)
T d1xfda1 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN-- 409 (465)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS--
T ss_pred eEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC--
Confidence 4444432 233344454444456665 6888877654 444332 3345544 33221 11222111111
Q ss_pred CCCceeEEECCCCcEEEEE
Q 001176 971 LVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 971 ~~~v~~~~~s~dg~~l~~~ 989 (1132)
.....+.|||+|++++..
T Consensus 410 -~~~~~~~~S~~~~y~v~~ 427 (465)
T d1xfda1 410 -CTYFSASFSHSMDFFLLK 427 (465)
T ss_dssp -CCCCEEEECTTSSEEEEE
T ss_pred -CCEEEEEECCCCCEEEEE
Confidence 345789999999998873
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=3.6e-07 Score=102.33 Aligned_cols=341 Identities=10% Similarity=0.048 Sum_probs=184.7
Q ss_pred cccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCc
Q 001176 729 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 808 (1132)
Q Consensus 729 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 808 (1132)
..+++.++....+|.+.+|++.+... ..+.-........+....+||||++++....-. ++|...
T Consensus 24 W~~~~~~~~~~~~g~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~--~~~r~s--------- 88 (465)
T d1xfda1 24 WISDTEFIYREQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDREYALFSYNVE--PIYQHS--------- 88 (465)
T ss_dssp BSSSSCBCCCCSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCC--CCSSSC---------
T ss_pred EeCCCcEEEEeCCCcEEEEECCCCCE----EEEEcCccccccccceeEECCCCCeEEEEEccc--ceeEee---------
Confidence 44556666666778999999986433 122112222334677889999999887654311 122110
Q ss_pred cccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEee-CCCCC-------
Q 001176 809 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-SPPPA------- 880 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~-~~~~~------- 880 (1132)
......++|+.++......... .. ...+....|||||+.+|...++.|.+.+..++..++... +..+.
T Consensus 89 --~~~~~~i~d~~~~~~~~l~~~~-~~-~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d 164 (465)
T d1xfda1 89 --YTGYYVLSKIPHGDPQSLDPPE-VS-NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (465)
T ss_dssp --CCSEEEEEESSSCCCEECCCTT-CC-SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred --ccccEEEEEccCCceeeccCcc-CC-ccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccc
Confidence 0011223344444432221111 01 445667889999999999999999999988776554433 21111
Q ss_pred ----------eEEEEEeCCCCCeEEEEeC-CCcE---------------------------------EEEEcccceeeee
Q 001176 881 ----------ATFLAFHPQDNNIIAIGME-DSSV---------------------------------QIYNVRVDEVKTK 916 (1132)
Q Consensus 881 ----------i~~l~~sp~~~~~lasg~~-dg~v---------------------------------~iwd~~~~~~~~~ 916 (1132)
-.++-||| ||+.||.... +..| .++|+.++.....
T Consensus 165 ~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~ 243 (465)
T d1xfda1 165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (465)
T ss_dssp HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred hhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEE
Confidence 25778999 8888887642 2333 3444433321111
Q ss_pred e------ccccCCeeEEEEcCCCCEEEEEc-CC---CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 917 L------KGHQNRITGLAFSPTLNALVSSG-AD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 917 l------~~h~~~V~~l~~spdg~~l~s~~-~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
. .....-+..+.|+|++++++... .+ ..+.++|..+++...... ....+... .......|++||+.+
T Consensus 244 ~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~-e~~~~wv~--~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-DESEAWLH--RQNEEPVFSKDGRKF 320 (465)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-EECSSCCC--CCCCCCEECTTSCSE
T ss_pred EeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE-EcCCceEe--ccCCceeEccCCCee
Confidence 1 11112367789999998766543 22 258888998887533211 11111110 112356899999854
Q ss_pred EE---E-eC--CeEEEEeC-------CCCceeecCCCCCCCCCeEEE-EEccCCCEEE-EEecCC----cEEEEeCCCcc
Q 001176 987 LV---V-HE--SQISVYDS-------KLECSRSWSPKDALPAPISSA-IYSCDGLLVY-AGFCDG----AIGVFDAETLR 1047 (1132)
Q Consensus 987 ~~---~-~d--~~v~vwd~-------~~~~~~~~~~~~~h~~~i~~i-~~s~dg~~la-s~~~dg----~i~vwd~~~~~ 1047 (1132)
+. . .+ +.+..+.+ .++.+..+..+ .-.|+.+ +|+++++.|+ ++..++ .++--++..+.
T Consensus 321 ~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G---~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~ 397 (465)
T d1xfda1 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (465)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EEEEeeeecccCceEEEEeccccccCCCceeEEeccC---CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC
Confidence 32 2 23 33444432 23333333322 4566665 6888887664 444332 24444455443
Q ss_pred eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC---CcEEEEecCCCcccc
Q 001176 1048 FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD---GAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D---g~i~vW~~~~~~~~~ 1104 (1132)
...++... .........+.||| ++++++-.... -.+.+++..+++...
T Consensus 398 ~~~~lt~~--------~~~~~~~~~~~~S~-~~~y~v~~~s~~~~P~~~~~~~~~~~~~~ 448 (465)
T d1xfda1 398 NRQCLSCD--------LVENCTYFSASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (465)
T ss_dssp CCBCSSTT--------SSSSCCCCEEEECT-TSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred cceeeccc--------cCCCCCEEEEEECC-CCCEEEEEeecCCCCeEEEEECCCCCEEE
Confidence 33322211 01223345888999 77777744433 477888887777443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.97 E-value=1.2e-07 Score=97.58 Aligned_cols=239 Identities=10% Similarity=0.061 Sum_probs=156.2
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
......++++++|...++.. .+.+..++..+.........-......+++++ +++++++....+.+++++-.+...+
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEE
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceee
Confidence 44568999999999766554 47777777654433222222234467899999 8888887777777777765555444
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCe
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ 993 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 993 (1132)
....+ .....++++.++++++++-..+..+..++...... ......+. .....++++++|+.+++ ..++.
T Consensus 92 ~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~~ 162 (260)
T d1rwia_ 92 LPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNNR 162 (260)
T ss_dssp CCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGTE
T ss_pred eeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeecccccc
Confidence 33332 34578999999999888877777787777765331 11111111 34578999999997776 46778
Q ss_pred EEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEE
Q 001176 994 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1073 (1132)
Q Consensus 994 v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1073 (1132)
|..++.++.....+.... ......|++.++|.++++....+.|..++...... ..+. ...-..+..+
T Consensus 163 i~~~d~~~~~~~~~~~~~--~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~----------~~~~~~P~~i 229 (260)
T d1rwia_ 163 VVKLEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP----------FTGLNTPLAV 229 (260)
T ss_dssp EEEECTTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC----------CCSCCCEEEE
T ss_pred ccccccccceeeeeeccc--cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc----------cCCCCCeEEE
Confidence 999998655544443221 45678999999999888888888899888765432 1111 1222467899
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1074 APHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1074 ~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++++ +++++++-..+++|+ .+.+-+
T Consensus 230 ~~d~-~g~l~vad~~~~rI~--~i~~~~ 254 (260)
T d1rwia_ 230 AVDS-DRTVYVADRGNDRVV--KLTSLE 254 (260)
T ss_dssp EECT-TCCEEEEEGGGTEEE--EECCCG
T ss_pred EEeC-CCCEEEEECCCCEEE--EEeCCC
Confidence 9998 678888767777555 444433
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.96 E-value=1.7e-07 Score=97.69 Aligned_cols=242 Identities=11% Similarity=0.098 Sum_probs=165.4
Q ss_pred CeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCC------CCCeEEEEEeCCCCCeEEEE-eCCCcEEEEEccc
Q 001176 839 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRV 910 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~lasg-~~dg~v~iwd~~~ 910 (1132)
....++++++|+.+++-. +..|++||.+ ++.+..+... ......+++.++.+.++++. +.++.|..++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 357899999999776654 6889999965 6766666321 12345677766345555443 34457777775 4
Q ss_pred ceeeeeec-cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-
Q 001176 911 DEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 988 (1132)
Q Consensus 911 ~~~~~~l~-~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 988 (1132)
++....+. .......++++.++|.++++....+.+.+++..... +. ..... .+ ......+++.++|..+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~-~~--~~g~~-~~---~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KH---LEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TT---CSSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce-ee--ccccc-cc---ccccceeeeccceeEEeee
Confidence 55555543 344567889999999999888888888888765422 11 11111 11 145678999999987777
Q ss_pred EeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcceecccCCCccccccccCCCC
Q 001176 989 VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1067 (1132)
Q Consensus 989 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1132)
...+.|.+||.+++.+..+.. .++......|++.++|+++++-.. ++.|.+|+. +|+.+..+... ...
T Consensus 175 ~~~~~V~~~d~~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~---------~~~ 243 (279)
T d1q7fa_ 175 NRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK---------VKH 243 (279)
T ss_dssp GGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES---------SCC
T ss_pred ccccceeeeecCCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCC---------CCC
Confidence 457899999998887777632 334566789999999997776543 457999985 48777665311 223
Q ss_pred CCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcc
Q 001176 1068 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1068 ~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~ 1102 (1132)
..+..++..| ++.+ ++++.+++|++|+..+..+
T Consensus 244 ~~p~~vav~~-dG~l-~V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 244 AQCFDVALMD-DGSV-VLASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp SCEEEEEEET-TTEE-EEEETTTEEEEEECSCCCC
T ss_pred CCEeEEEEeC-CCcE-EEEeCCCeEEEEEeeeecC
Confidence 4677888888 6654 5566899999999987653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.95 E-value=1e-07 Score=98.13 Aligned_cols=242 Identities=8% Similarity=-0.059 Sum_probs=152.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.....+++++++|+.+++..+..+.+..++......... ..+-......++++++|++++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence 4456789999999985455555667777776654432210 111123456789999999887
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+....+.+++++-.+...+. .. .......++++.++++ ++++-.....+..++..................+++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77666666666544433222 12 2234678999999998 666666667777777554432222112234557888
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+.+. +.++++...++.|..+|.+.................+++.++|+++++.. ..+.|..++...... ..+.
T Consensus 147 ~~~~--g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~~~~~~~~~~-~~~~ 219 (260)
T d1rwia_ 147 VDNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTS-TVLP 219 (260)
T ss_dssp ECTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEEEECTTCSCC-EECC
T ss_pred ecCC--CCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec----CCCEEEEEeCCCCeE-EEEc
Confidence 8664 47888888889999999876554443334455678999999998877764 366788887654432 2222
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
...-.....++++++|+.+++-..++.|+.++..
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 2221256789999999877765666777665543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.93 E-value=7.3e-08 Score=101.90 Aligned_cols=234 Identities=9% Similarity=0.021 Sum_probs=150.5
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee-ee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KT 915 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~ 915 (1132)
..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +|+++++...++.+..|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578899999999988877 89898888654 3 234444667899999999 889999988888998888765321 11
Q ss_pred ee--ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeee--CCCCCCCCCCCceeEEECCCCcEEEE--E
Q 001176 916 KL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ--APAGRQSPLVGETKVQFHNDQTHLLV--V 989 (1132)
Q Consensus 916 ~l--~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~~--~ 989 (1132)
.+ .........+++.++|+++++-+.++.+..++...+.......-. ..............+.++ +..+.+ .
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 11 124456789999999999999999999988888775422111100 001111111233455554 445555 3
Q ss_pred eCCeEEEEeCCCC-ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce-ecccCCCccccccccCCCC
Q 001176 990 HESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF-RCRIGPSAYIPTYAVSSNT 1067 (1132)
Q Consensus 990 ~d~~v~vwd~~~~-~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 1067 (1132)
..+.|..++.... ....... .........++|++||.+.++...++.|..++...... +.... ..-
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~-----------~~~ 250 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEI-FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE-----------QGV 250 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEE-EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG-----------GTC
T ss_pred CCCeEEecccccccccccccc-ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC-----------CCC
Confidence 5678888887322 2111110 00133456799999999888888899999998774321 21111 122
Q ss_pred CCcEEEEe---CCCCCCeEEEEeCC
Q 001176 1068 AHPLVIAP---HPSEPNQIALGMSD 1089 (1132)
Q Consensus 1068 ~~v~~~~~---~p~~~~~l~s~~~D 1089 (1132)
..+++++| .+ |++.|..++..
T Consensus 251 ~~pt~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 251 IGSTAVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp TTEEEEEECCSTT-TTTEEEEEECT
T ss_pred CCceEEEEcCCCC-CCCEEEEECCC
Confidence 46789999 44 66777655543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=5.1e-07 Score=93.85 Aligned_cols=245 Identities=12% Similarity=0.116 Sum_probs=163.9
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 850 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~ 850 (1132)
....++++++|+.+++-..++.|++|+.+ ++.+... ...+. .... ......+++..+..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~~------~~~~~-------~~~~-~~~p~~~~~~~~~~ 82 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQF------GECGK-------RDSQ-LLYPNRVAVVRNSG 82 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEEE------CCBSS-------STTC-BSSEEEEEEETTTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEEe------cccCC-------Cccc-cccccccccccccc
Confidence 45789999999977777778889888642 2111110 00000 0001 22344566665544
Q ss_pred -EEEEee--CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee--ccccCCe
Q 001176 851 -YVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNRI 924 (1132)
Q Consensus 851 -~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V 924 (1132)
++++.. ++.|.+++.. ++....+.. .......+++.+ +++++++....+.+.+++. +++.+..+ ..+....
T Consensus 83 ~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 83 DIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFP 159 (279)
T ss_dssp EEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred ccceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeeccccccccccc
Confidence 444443 4678888864 566666543 445678999999 8888888777788888885 45656654 3456678
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCC
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE 1002 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~ 1002 (1132)
..+++.+++..+++....+.|++|+..... +. .+ ...+.. .....+++.++|+.+++- .++.|.+|+.+++
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~~--~~-g~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LR--QI-GGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCCE-EE--EE-SCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred ceeeeccceeEEeeeccccceeeeecCCce-ee--ee-cccccc---cCCcccccccCCeEEEEECCCCcEEEEECCCCC
Confidence 899999999999999999999999976532 11 11 112222 456789999999977773 3457999999888
Q ss_pred ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 1003 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 1003 ~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
.+..+.... .......+++.|||.+++ ++.+++|++|......+
T Consensus 233 ~~~~~~~~~-~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 233 LISALESKV-KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEEEESS-CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEEEEeCCC-CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 776654321 134678999999997555 56789999999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.80 E-value=1.2e-06 Score=92.43 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=155.5
Q ss_pred CCeeEEEEccCCCeEEEEEcC-------CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 344 SNVMSMDFHPQQQTILLVGTN-------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
....+++|.|+|+ ++++... +|+|..||..++..... ... ......+.-..++|.++
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~------~~~---------~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CKP---------EVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------ECC---------EETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEE------ECC---------ccccCCCcceeEEEeCC
Confidence 3567789999998 4544322 46788888887754321 000 01111234578999999
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcC---------------CCcEEEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---------------DKMIKVWD 480 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~---------------dg~v~vwd 480 (1132)
|+.++++.....|...+.+++..........+.. ...+++++.++|. +.+|-.. +|.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888777778888877643221110111111 1357899999998 5555321 23454454
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCc---cEEEEEecCCeEEEEEcCCCCceE------EecC-CCCeEEEEEEcCCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESI---QFIFSTAIDGKIKAWLYDYLGSRV------DYDA-PGNWCTMMAYSADG 550 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~------~~~~-~~~~v~~~~~s~~~ 550 (1132)
. .++..... ..-..-+.++|++..++ .++++-+..+.|..||+....... .+.. .......+++..+|
T Consensus 160 ~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G 237 (314)
T d1pjxa_ 160 T-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp T-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred e-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence 3 34433322 22334578899887653 255666778899999887554432 1111 12345689999999
Q ss_pred CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEE-EEEcCCeEEEEECC
Q 001176 551 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMD 615 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 615 (1132)
+..++.. +.+.|.+||.+.++.+..+..... ...+++|.|+++.|+ +.+.++.|...++.
T Consensus 238 nlyVa~~----~~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 238 NLLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cEEEEEc----CCCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 9877654 367899999988887776665444 678899999997554 45577888887765
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.79 E-value=1.7e-06 Score=91.21 Aligned_cols=244 Identities=10% Similarity=0.030 Sum_probs=149.5
Q ss_pred CeEEEEEcCCCCeEEEEeC-------CCeEEEEEecCCCceeeee-eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 407 SVNRCVWGPDGLMLGVAFS-------KHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~-------dg~i~iwd~~~~~~~~~~~-~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
..-.++|.|||+++++... +++|..||..++....... ....-.+.-..++|.+++. .++++...+.|..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEEEECCCeEEE
Confidence 3456789999998876432 4678889888765432110 1111123456899999998 5666666677888
Q ss_pred EECCCCeEEEEecCCC----CCeEEEEeeccCCccEEEEEecC-------------CeEEEEEcCCCCceEEecCCCCeE
Q 001176 479 WDVVAGRKQYTFEGHE----APVYSVCPHHKESIQFIFSTAID-------------GKIKAWLYDYLGSRVDYDAPGNWC 541 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~----~~v~~i~~~~~~~~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~~~~~~v 541 (1132)
.|...+.......... ...+.+++.++ |.+.++-... ..-++|.+........+.......
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~p 174 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP 174 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCC--CCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCccee
Confidence 8966554322111111 13567787654 4666664321 111333333223333222222334
Q ss_pred EEEEEcCCCC----EEEEEecCCCCCCeEEEEeCCCCcee------eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 542 TMMAYSADGT----RLFSCGTSKEGESHLVEWNESEGAIK------RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 542 ~~~~~s~~~~----~l~~~~~~~~~~~~i~~wd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
+.++|+++++ .|+.+.. ..+.|+.||+.....+ ..+.+........+++..+|+.+++....+.|.+
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred eeeEECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence 6788988765 4555432 4677888887543222 1222222224567999999998888778899999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcC
Q 001176 612 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANS 659 (1132)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~ 659 (1132)
||.+.++.+..+..+.. ...+++|.+|++.| ++.+.+|.|...++.
T Consensus 252 ~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 252 FGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 99998887777765533 57899999999755 445567888777764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.70 E-value=2.6e-06 Score=90.09 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=150.9
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC----CcEEEEEcccc
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVD 911 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~ 911 (1132)
...+..++|+++|++.++-. +++|..|+.++.+....+.........++|++ +|+++++...+ +.+...+..++
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence 34457899999998666544 78999999988776666666667789999999 88888765432 33555555544
Q ss_pred eeeeeecc--ccCCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 912 EVKTKLKG--HQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 912 ~~~~~l~~--h~~~V~~l~~spdg~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
........ -......+++.++|++.++.... +.+..++.+..... ...... .....++|+||+
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg 188 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDE 188 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTS
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeecccc
Confidence 43333321 12347789999999988775322 23444444432211 111111 234689999999
Q ss_pred cEEEEE--eCCeEEEEeCC--CCceeec----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCC
Q 001176 984 THLLVV--HESQISVYDSK--LECSRSW----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1055 (1132)
Q Consensus 984 ~~l~~~--~d~~v~vwd~~--~~~~~~~----~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~ 1055 (1132)
+.|.++ ..+.|..|+++ +...... .........-..|++.++|++.++....+.|.+||- +|+.+..+..+
T Consensus 189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P 267 (319)
T d2dg1a1 189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 267 (319)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence 987775 46889999872 2222111 000111223567999999998888888999999995 68988887643
Q ss_pred ccccccccCCCCCCcEEEEeCCCCCCeEEEEeC
Q 001176 1056 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1088 (1132)
Q Consensus 1056 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 1088 (1132)
. . ..++...+++++|.| +.+.+++.+.
T Consensus 268 ~----~-~~~~~~~~~~~~~~~-~~~~~~~t~~ 294 (319)
T d2dg1a1 268 G----R-DEGHMLRSTHPQFIP-GTNQLIICSN 294 (319)
T ss_dssp T----G-GGTCSCBCCEEEECT-TSCEEEEEEE
T ss_pred C----c-CCCcCceeeeEEEeC-CCCEEEEEcC
Confidence 2 1 224556778999998 5455555443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.66 E-value=5.1e-06 Score=87.83 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=144.9
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 850 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~ 850 (1132)
.+..++|.++|+..++-..++.|..|+ +.++......... ......+++++||+
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~----------------------p~g~~~~~~~~~~----~~~p~gla~~~dG~ 94 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKIN----------------------PETKEIKRPFVSH----KANPAAIKIHKDGR 94 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEEC----------------------TTTCCEEEEEECS----SSSEEEEEECTTSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEE----------------------CCCCeEEEEEeCC----CCCeeEEEECCCCC
Confidence 346889999998666666677666653 3333222221222 45678999999999
Q ss_pred EEEEee-C----CeEEEEECCCCeEEEEeeC--CCCCeEEEEEeCCCCCeEEEEeCC------CcEEEEEcccceeeeee
Q 001176 851 YVMSAS-G----GKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEVKTKL 917 (1132)
Q Consensus 851 ~la~~s-d----g~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~~l 917 (1132)
++++.. + +.+...+..+......... .......+++.+ +|++.++.... +.+..++... +.+..+
T Consensus 95 l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~ 172 (319)
T d2dg1a1 95 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPI 172 (319)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEE
T ss_pred EEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc-ceeEEE
Confidence 887653 2 3455666655544333322 223477899999 88877654321 3355555433 333333
Q ss_pred ccccCCeeEEEEcCCCCEE-EEEcCCCcEEEEECCCccccccee----eeCCCCCCCCCCCceeEEECCCCcEEEE-EeC
Q 001176 918 KGHQNRITGLAFSPTLNAL-VSSGADAQLCMWSIDKWEKLKSRF----IQAPAGRQSPLVGETKVQFHNDQTHLLV-VHE 991 (1132)
Q Consensus 918 ~~h~~~V~~l~~spdg~~l-~s~~~D~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d 991 (1132)
...-...+.++|+||++.| ++-+..+.|..|+++......... .....+. .....+++.++|++.++ ...
T Consensus 173 ~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~----~~PdGl~vD~~G~l~Va~~~~ 248 (319)
T d2dg1a1 173 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQ 248 (319)
T ss_dssp EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETT
T ss_pred eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc----cceeeeeEcCCCCEEEEEcCC
Confidence 3333446789999999865 555678899999986432211111 1111111 22467999999997777 568
Q ss_pred CeEEEEeCCCCceeecCCCC---CCCCCeEEEEEccCCCEEEEEecC
Q 001176 992 SQISVYDSKLECSRSWSPKD---ALPAPISSAIYSCDGLLVYAGFCD 1035 (1132)
Q Consensus 992 ~~v~vwd~~~~~~~~~~~~~---~h~~~i~~i~~s~dg~~las~~~d 1035 (1132)
+.|.+||.+++.+..+.... ++...+++++|.+++..+++.+.+
T Consensus 249 g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 249 GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 99999999888777664321 334568899999988877766543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.49 E-value=7.6e-06 Score=84.84 Aligned_cols=235 Identities=10% Similarity=0.031 Sum_probs=129.1
Q ss_pred EEccC--CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC-C
Q 001176 350 DFHPQ--QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-K 426 (1132)
Q Consensus 350 ~~spd--g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-d 426 (1132)
..||| |++++++. +|.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46888 99776664 5678888999887543 4457778899999999999987542 2
Q ss_pred -----CeEEEEEecCCCceeeeee---eecccCCEEEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeEEEEecC
Q 001176 427 -----HIVHLYTYNPTGELRQHLE---IDAHVGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 427 -----g~i~iwd~~~~~~~~~~~~---l~~h~~~v~~v~~s~d~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~ 492 (1132)
..|.+++..+++....... ............|+|||+ .|+.... ...+...+...+......
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-- 138 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC--
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec--
Confidence 2466777776654321100 011223457789999999 5554322 224556665555543222
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCC-----------eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDG-----------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg-----------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
........+ +. ++..++....+. ....+... ..................++++ .++... +.+
T Consensus 139 -~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 211 (281)
T d1k32a2 139 -LGPATHILF-AD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVN-SGAFKKIVDMSTHVSSPVIVGH--RIYFIT-DID 211 (281)
T ss_dssp -SCSCSEEEE-ET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEE-TTEEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred -CCccceeee-cC-CCeEEEeeccccceeeeeccCCcceeeeecc-ccceeeccCCccccceeeeecc--ccceec-ccc
Confidence 222222222 22 112222222111 11111111 1111222222333344455554 333333 234
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
+...|+++|+.+++..+ +..... .....|+|||+.|+.. .++.|+++|+.+++...
T Consensus 212 ~~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp SSCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred cccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 56679999988766543 332222 2334689999988764 47889999998877554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.31 E-value=0.00014 Score=75.22 Aligned_cols=188 Identities=12% Similarity=0.067 Sum_probs=126.7
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeC----CCCCeEEEEEeCCCCCeEEEEeC----CCcEEEEEc
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGME----DSSVQIYNV 908 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~ 908 (1132)
...+.++++.++|.++++. ...+.++|..+++....... ....++.+.+.| +|++.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEE-eCccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeee
Confidence 4567899999999887764 45699999998876443321 123478899999 7887765432 234567777
Q ss_pred ccceeeeeeccccCCeeEEEEcCCCCEE-EEEcCCCcEEEEECCCcccc--cce-eeeCCCCCCCCCCCceeEEECCCCc
Q 001176 909 RVDEVKTKLKGHQNRITGLAFSPTLNAL-VSSGADAQLCMWSIDKWEKL--KSR-FIQAPAGRQSPLVGETKVQFHNDQT 984 (1132)
Q Consensus 909 ~~~~~~~~l~~h~~~V~~l~~spdg~~l-~s~~~D~~i~iwd~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 984 (1132)
..++....... -..-+.++|+++++.+ ++-+..+.|..++++..... ... ......+.. .....+++..+|+
T Consensus 136 ~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~---g~pdG~~vD~~Gn 211 (295)
T d2ghsa1 136 AKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGH 211 (295)
T ss_dssp ETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSC
T ss_pred cCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccc---ccccceEEcCCCC
Confidence 77765554443 3346789999999865 45566788988887542211 111 111111111 3467889999998
Q ss_pred EEEEE-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEc-cCCCEEEEEe
Q 001176 985 HLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDGLLVYAGF 1033 (1132)
Q Consensus 985 ~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s-~dg~~las~~ 1033 (1132)
+.++. ..+.|..||.+++.+..+... ...+++++|- +|.+.|+..+
T Consensus 212 lWva~~~~g~V~~~dp~G~~~~~i~lP---~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 212 IWNARWGEGAVDRYDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEEEETTTEEEEECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEEE
T ss_pred EEeeeeCCCceEEecCCCcEeeEecCC---CCceEEEEEeCCCCCEEEEEE
Confidence 77774 678899999988888777553 4579999996 7877665443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=2.3e-05 Score=81.00 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=127.3
Q ss_pred EEeeC--CCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeC-C-----CcEEEEEcccceeee
Q 001176 844 ALSKN--DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-D-----SSVQIYNVRVDEVKT 915 (1132)
Q Consensus 844 ~~s~d--g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~-d-----g~v~iwd~~~~~~~~ 915 (1132)
.+||| |+.+|..++|.|.+.|+.+++. +.+..+.+.+...+||| ||+.||.... + ..|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 46899 9999998889999999998876 45666777889999999 8888886542 2 247778887776544
Q ss_pred eec------cccCCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 916 KLK------GHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 916 ~l~------~h~~~V~~l~~spdg~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
... .........+|+|||+.|+..... ..+...+...+.. .....+ ......+.+++
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------~~~~~~~~~~~ 151 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF-----VPLNLG------PATHILFADGR 151 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE-----EECCSC------SCSEEEEETTE
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee-----EEecCC------ccceeeecCCC
Confidence 321 122345678999999998875432 2344555554331 111111 12233333333
Q ss_pred cEEEEEe-CC-----------eEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC--CcEEEEeCCCccee
Q 001176 984 THLLVVH-ES-----------QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--GAIGVFDAETLRFR 1049 (1132)
Q Consensus 984 ~~l~~~~-d~-----------~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d--g~i~vwd~~~~~~~ 1049 (1132)
..++... +. ...++............. ........++++. .+.....+ ..|+++|+++++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~ 227 (281)
T d1k32a2 152 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM---STHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR 227 (281)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC---SSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE
T ss_pred eEEEeeccccceeeeeccCCcceeeeeccccceeeccCC---ccccceeeeeccc-cceecccccccceEEEeCCCCceE
Confidence 3333321 10 111222211111111111 3344455555553 23333333 34777888866543
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++.. .....+ ..|+| ||+.|+- ..++.|.++|+.+++
T Consensus 228 -~lt~----------~~~~~~--~~~Sp-DG~~I~f-~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 228 -KHTS----------FTDYYP--RHLNT-DGRRILF-SKGGSIYIFNPDTEK 264 (281)
T ss_dssp -ECCC----------CCSSCE--EEEEE-SSSCEEE-EETTEEEEECTTTCC
T ss_pred -Eeec----------CCCccc--ccCcC-CCCEEEE-EeCCEEEEEECCCCC
Confidence 3321 111222 35788 6666664 347889999999888
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=0.00035 Score=72.08 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=148.9
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 426 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 426 (1132)
-+..|.+....+..+--..+.|.-||..+++... |. ....+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEEE-eC
Confidence 4567887555577776677899999998875431 11 23468899999999877654 55
Q ss_pred CeEEEEEecCCCceeeeeeeecc--cCCEEEEEEecCCCcEEEEEEcC----CCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGD----DKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~~----dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
.+.++|..+++... ....... ...++++.+.|+|. +.++... .+.-.+|.+..++....+.. -..-+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence 48999999876432 2122111 23588999999998 4444321 23456777777766544432 3346788
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCc------eE--EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGS------RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
+|+++++ .++++-+..+.|..++++.... .. ......+....+++..+|++.++... .+.|..||.
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp- 227 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT- 227 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-
T ss_pred eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC-
Confidence 8877653 4667777888999998754321 11 22334557889999999987766542 567999995
Q ss_pred CCceeeeeccccCCceEEEEEe-CCCCEEEEEE
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 604 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1132)
.|+.+..+..... .+++++|. ++.+.|+..+
T Consensus 228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence 5888888876544 68889996 6766666543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.92 E-value=0.01 Score=61.45 Aligned_cols=165 Identities=11% Similarity=0.073 Sum_probs=100.6
Q ss_pred cEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCC-------------ccEEEEEecCCeEEEEEcCCCCc
Q 001176 464 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES-------------IQFIFSTAIDGKIKAWLYDYLGS 530 (1132)
Q Consensus 464 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-------------~~~l~s~s~dg~i~~wd~~~~~~ 530 (1132)
.+.+.||+..|.|+|+-+.+++.++.+.-....-. --|-.+.. ..+|.. ..+.+..|
T Consensus 13 yy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~-~G~G~~~es~~il~~~~~~~t~~~l~~--~g~~~~~~------- 82 (459)
T d1fwxa2 13 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAA--NGKRIHDN------- 82 (459)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCC----------------CCC-------
T ss_pred EEEEeeCCccceEEEEecCCcceEEEeeeecCCCC-cccCcchhHHHHhhcccChhhhhhhhc--cCcccccC-------
Confidence 34788999999999999999999887642110000 00000000 001110 00111111
Q ss_pred eEEecCCCCeEEEEEEcC---CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe--CCCCEEEEEEc
Q 001176 531 RVDYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGD 605 (1132)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~ 605 (1132)
+..+. ..+++.. ||+++++... .+.+|.+.|+++.+..+.........+..+... |+-.+++.+++
T Consensus 83 -----GD~HH-P~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e 153 (459)
T d1fwxa2 83 -----GDLHH-VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGE 153 (459)
T ss_dssp -----CCBCC-EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEEC
T ss_pred -----CCcCC-CcccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCc
Confidence 01111 1455543 8999998753 588899999999988765554444356666664 45567777765
Q ss_pred CC------------------eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 606 EF------------------QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 606 dg------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+. .+.++|..+++....+.... ....+.++++|+++++.+.+
T Consensus 154 ~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 154 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp SCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred cccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 33 36788999998888777654 35689999999999887753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.84 E-value=0.0041 Score=64.41 Aligned_cols=238 Identities=11% Similarity=0.112 Sum_probs=137.7
Q ss_pred EEEEe---eCCCEEEEee--CCeEEEEECCCCeEEEEeeCC-CCCeEEEEEeCC-CCCeEEEEeCC--------------
Q 001176 842 CIALS---KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQ-DNNIIAIGMED-------------- 900 (1132)
Q Consensus 842 ~~~~s---~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~-~~~~lasg~~d-------------- 900 (1132)
.+.+. +||+++.+.+ ++.|.+.|+++.++.....-+ ...+..+...+. ...+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 44554 3899999997 688999999999987755443 344566665431 44566666553
Q ss_pred ----CcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCC---------------cEEEEECCCccc------
Q 001176 901 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA---------------QLCMWSIDKWEK------ 955 (1132)
Q Consensus 901 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~---------------~i~iwd~~~~~~------ 955 (1132)
+.+.++|..+.+...++.- .+....+.+++||+++++.+.+. .+.++++...+.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2366788888887766542 33466789999999998876431 133333311000
Q ss_pred ---ccc-eeeeCCC--CC-----CCCCCCceeEEECCCCcEEEEEe--CCeEEEEeCC-CCce--------eecCCCCCC
Q 001176 956 ---LKS-RFIQAPA--GR-----QSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSK-LECS--------RSWSPKDAL 1013 (1132)
Q Consensus 956 ---~~~-~~~~~~~--~~-----~~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~~-~~~~--------~~~~~~~~h 1013 (1132)
... ..+.... +. .+.......+.++|||+++++++ +.++.|+|++ .... .........
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 000 0000000 00 00002346889999999999964 7899999982 1111 011111112
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc----------ceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1014 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL----------RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1014 ~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
.-.-..-+|..+|.-..+---|..|.-|++... ..+.++. -+|.+.|.....+. ...| +|++|
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~-v~y~~gh~~~~~g~-----t~~~-dgk~l 400 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQPGHLKTVMGE-----TLDA-TNDWL 400 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCEEEEEETTTT-----STTC-CSSEE
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccc-cccCCCCCccCcCC-----cCCC-CCCEE
Confidence 334456788888865555668999999998543 2233332 23444332222211 2345 88888
Q ss_pred EEEe
Q 001176 1084 ALGM 1087 (1132)
Q Consensus 1084 ~s~~ 1087 (1132)
++..
T Consensus 401 ~~~n 404 (459)
T d1fwxa2 401 VCLS 404 (459)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8876
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.74 E-value=0.016 Score=65.14 Aligned_cols=193 Identities=11% Similarity=0.025 Sum_probs=113.4
Q ss_pred EEEEc-CCCcEEEEECC-CCeEEEEecCCCC----------Ce-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001176 467 IVTCG-DDKMIKVWDVV-AGRKQYTFEGHEA----------PV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 533 (1132)
Q Consensus 467 l~s~~-~dg~v~vwd~~-~~~~~~~~~~h~~----------~v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 533 (1132)
++.++ .++.|.-.|.. +|+.+-++..... .+ ..+++. +..++.++.|+.+.-.|.++++....
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 44444 46788888874 6998877642110 00 122332 14678889999999999999887665
Q ss_pred ecCCCC----eEEEEEEcCCCCEEEEEecC--CCCCCeEEEEeCCCCceeeeecccc-----------------------
Q 001176 534 YDAPGN----WCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFR----------------------- 584 (1132)
Q Consensus 534 ~~~~~~----~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 584 (1132)
...... .++.--.-.++. ++.+... ....+.|+-+|+.+|+.+..+....
T Consensus 141 ~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence 432211 111111112333 3333321 1136789999999999987654321
Q ss_pred -------------CCce-EEEEEeCCCCEEEEEEc----------------CCeEEEEECCCCeeEEEEeCCCCC-----
Q 001176 585 -------------KRSL-GVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGL----- 629 (1132)
Q Consensus 585 -------------~~~v-~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~----- 629 (1132)
...+ ...++.+....++.+.. ...+.-.|.++++.+-.++...+.
T Consensus 220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D 299 (571)
T d2ad6a1 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence 0011 23566777777666543 346788899999988877643221
Q ss_pred --CCcceEEEcCCCC---EEEEEeCCCcEEEEEcCCccee
Q 001176 630 --PASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 630 --~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
..........+++ .++.++.+|.+.++|..+++.+
T Consensus 300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i 339 (571)
T d2ad6a1 300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence 1111122223443 4677888999999999999433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.71 E-value=0.031 Score=55.52 Aligned_cols=236 Identities=9% Similarity=-0.044 Sum_probs=148.0
Q ss_pred CeEEEEeCCCeEEEEEecCCCce--eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
.+|+.+. .+.|+-.+++..... .....+..+...+..++|.+..+. ++.+-..++.|+..++..+.....+.....
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 3444443 346777777654321 111223344556888999988774 445556678899888876655444444445
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
.+.++++....+ .+..+-...+.|.+.+++.................+++.|...+++..... .+...|..-++....
T Consensus 80 ~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~-~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCC
T ss_pred cccEEEEeccCC-eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecC-CCCcEEEEecCCCCC
Confidence 688898875442 455566677899999998766655555445678899999988877755321 123345555655433
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGI 653 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 653 (1132)
...... ..-.....+++++.++.|+.+. ..+.|...++........+.... ...++++. +..|+.. ...+.|
T Consensus 158 ~~~i~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~~I 231 (263)
T d1npea_ 158 RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSV 231 (263)
T ss_dssp CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEE
T ss_pred ceeeee-ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCCEE
Confidence 322222 2222567899998888887764 67889999998765544444322 23567775 4445444 467888
Q ss_pred EEEEcCCcce
Q 001176 654 KILANSDGVR 663 (1132)
Q Consensus 654 ~iw~~~~~~~ 663 (1132)
...|..+++.
T Consensus 232 ~~~~~~~g~~ 241 (263)
T d1npea_ 232 IAMDLAISKE 241 (263)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCcc
Confidence 8889888843
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.69 E-value=0.016 Score=65.44 Aligned_cols=195 Identities=11% Similarity=0.066 Sum_probs=112.0
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCC----------CCe-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE----------APV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~----------~~v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
.++.++.++.|.-+|.++|+.+-++.... ..+ ..+.+. ...++.++.|+.+.-.|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE----CCcEEEEecccceeeeccccccceecc
Confidence 46677788999999999999988764211 011 112221 146778888999988898888877654
Q ss_pred cCCCCeE--EEEEEcC--CCCEEEEEec--CCCCCCeEEEEeCCCCceeeeeccccC-----------------------
Q 001176 535 DAPGNWC--TMMAYSA--DGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFRK----------------------- 585 (1132)
Q Consensus 535 ~~~~~~v--~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------- 585 (1132)
....... ..+.-.| -+..+++++. .....+.|+.+|.++|+.+..+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 3321110 0001111 1234444432 122356799999999999877643210
Q ss_pred -------Cce-EEEEEeCCCCEEEEEEc-------------------CCeEEEEECCCCeeEEEEeCCCCC-------CC
Q 001176 586 -------RSL-GVVQFDTTRNRFLAAGD-------------------EFQIKFWDMDNMNMLTTVDADGGL-------PA 631 (1132)
Q Consensus 586 -------~~v-~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 631 (1132)
..+ ...++.++...++.+.. ...|.-.|.++++.....+...+. ..
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 011 23556666666654321 124667788888877665532211 01
Q ss_pred cceEEEcCCC---CEEEEEeCCCcEEEEEcCCccee
Q 001176 632 SPRLRFNKEG---SLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 632 v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
........++ ..++.++.+|.+.++|..+++.+
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~ 350 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccccc
Confidence 1111222233 35677888999999999999443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.65 E-value=0.024 Score=63.91 Aligned_cols=197 Identities=11% Similarity=0.037 Sum_probs=115.0
Q ss_pred EEEEEcCCCcEEEEEC-CCCeEEEEecCCCC----------C-eEEEEeecc--CCccEEEEEecCCeEEEEEcCCCCce
Q 001176 466 CIVTCGDDKMIKVWDV-VAGRKQYTFEGHEA----------P-VYSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGSR 531 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~-~~~~~~~~~~~h~~----------~-v~~i~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~~~ 531 (1132)
++++++.++.+...|. .+|+.+-++..... . -..+++.+. ....+++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3344455677777776 57888877642110 1 123444322 22347888999999999999998887
Q ss_pred EEecCCCCeE-EEEEEcC--CCCEEEEEecC--CCCCCeEEEEeCCCCceeeeecccc----------------------
Q 001176 532 VDYDAPGNWC-TMMAYSA--DGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFR---------------------- 584 (1132)
Q Consensus 532 ~~~~~~~~~v-~~~~~s~--~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~---------------------- 584 (1132)
..+....... ..+.-+| .+..++.+... ....+.|+-+|+.+|+++.++....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~ 224 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccc
Confidence 7654321100 0011111 13344444321 1235889999999999988764211
Q ss_pred ---------------CCceEEEEEeCCCCEEEEEEc----------------CCeEEEEECCCCeeEEEEeCCCCC----
Q 001176 585 ---------------KRSLGVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGL---- 629 (1132)
Q Consensus 585 ---------------~~~v~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~---- 629 (1132)
......+++.+....++.+.. ...|.-.|+.+++.+-.++...+.
T Consensus 225 ~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~ 304 (596)
T d1w6sa_ 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY 304 (596)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCC
Confidence 001223566777777766532 245778899999988877543221
Q ss_pred ---CCcceEEE-cCCCC---EEEEEeCCCcEEEEEcCCcc
Q 001176 630 ---PASPRLRF-NKEGS---LLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 630 ---~~v~~~~~-s~~~~---~l~~~~~dg~i~iw~~~~~~ 662 (1132)
.....+.. ..+|+ .++....+|.+.++|..+++
T Consensus 305 d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 305 AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 11111111 23443 67778889999999999993
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.04 Score=54.85 Aligned_cols=215 Identities=8% Similarity=-0.049 Sum_probs=131.1
Q ss_pred CCcCeEEEEEcCCCCeEEEEe-CCCeEEEEEecCCCceeee-eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 404 AAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
....+..++|.+..+.|.-.. .++.|...+++........ ..+......+..+++.+.+.. +.++-...+.|.+.++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~ 106 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 106 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEec
Confidence 344677899999887776654 4666776666543211111 112223345778999887775 4445566789999998
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
........+........+++++|.. |.++.+. +..+.|...+++.................+++.+.++.|..+..
T Consensus 107 ~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~-- 183 (266)
T d1ijqa1 107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 183 (266)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCceEEEEEcCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC--
Confidence 7666555555556678899998754 2344443 23456766677655444444444456789999998888887743
Q ss_pred CCCCeEEEEeCCCCceeeeeccccC-CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
..+.|...++.............. .....+++. +..|+.+. .++.|+..+..++.....+..
T Consensus 184 -~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 184 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred -CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 366788888865443333322221 134456665 44555554 667888888777766655543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=0.036 Score=54.05 Aligned_cols=258 Identities=9% Similarity=0.113 Sum_probs=144.7
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..++.+.|+..+..+.+-.- ...+.-.+|..+.++.-+ ...+.++|+++.+.+....... .|.--.|-.+.
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~~- 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSSS-
T ss_pred CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCCC-
Confidence 45688999987653322221 122355789888777755 6689999999999999888764 46666665544
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCcc
Q 001176 643 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 722 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1132)
.|+..+. ..|+-|+++......+.+..|..-
T Consensus 115 ~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L------------------------------------------------ 145 (327)
T d1utca2 115 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 145 (327)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred EEEEEcC-CceEEEcccCCCCchhhhhhcccc------------------------------------------------
Confidence 5555544 489999986543334443333210
Q ss_pred CcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc-------cceeEE
Q 001176 723 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 795 (1132)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~v 795 (1132)
....|.....+++.++++..+- .|.+.+
T Consensus 146 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQL 180 (327)
T d1utca2 146 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 180 (327)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEE
Confidence 1234555555666665544321 266777
Q ss_pred EeeccccCCC-CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCe---E
Q 001176 796 WKWQRTERNP-SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK---V 870 (1132)
Q Consensus 796 w~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~---~ 870 (1132)
|..+.....+ +|.. +......+.+. ..+..-++|... +. .+++++.++.+.. .
T Consensus 181 YS~er~~sQ~ieGha-------------a~F~~~~~~g~---~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~ 238 (327)
T d1utca2 181 YSVDRKVSQPIEGHA-------------ASFAQFKMEGN---AEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQ 238 (327)
T ss_dssp EETTTTEEEEECCSE-------------EEEEEECCTTC---SSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCC
T ss_pred EEeccCcCcccccee-------------eeeEEEEcCCC---CCCceEEEEEEC------CCCCcEEEEEEcCCCccCCC
Confidence 7654321110 0100 00001111111 111112222211 11 3689999986521 1
Q ss_pred ---E--EEe-eC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcC
Q 001176 871 ---M--TMF-MS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 871 ---~--~~~-~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
. ..+ -. ..+-..++.+|+ .-.++..-+.-|.|++||+.++.++..-+--.+.|..-+-..+..=++....
T Consensus 239 ~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr 317 (327)
T d1utca2 239 PFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR 317 (327)
T ss_dssp CCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred CCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECC
Confidence 1 111 11 234467888998 6678888999999999999999988765545555554444444444555556
Q ss_pred CCcEE
Q 001176 942 DAQLC 946 (1132)
Q Consensus 942 D~~i~ 946 (1132)
+|.|.
T Consensus 318 ~GqVl 322 (327)
T d1utca2 318 KGQVL 322 (327)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 66554
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.62 E-value=0.006 Score=65.46 Aligned_cols=283 Identities=8% Similarity=-0.024 Sum_probs=144.1
Q ss_pred CeeEEEEccCCCeEEEEEcCC-----C------cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 345 NVMSMDFHPQQQTILLVGTNV-----G------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~d-----g------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
.+.......+|+ +++.|+.+ + .+.+||..++....... ....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEE
Confidence 444455556777 66666532 1 37789988876432100 01223333446688
Q ss_pred cCCCCeEEEEeCC-CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC------CcEEEEECCCCeE
Q 001176 414 GPDGLMLGVAFSK-HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRK 486 (1132)
Q Consensus 414 spdg~~las~~~d-g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------g~v~vwd~~~~~~ 486 (1132)
.+||++++.|+.+ ..+.+||..+..-.. ...+... ..-.+++..+||+ +++.|+.+ ..+.+||..+.+-
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 9999999998765 579999998754321 1122111 1234567778998 67777643 3689999988764
Q ss_pred EEEecC---------CCCCe----EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C------CCeEEEEE
Q 001176 487 QYTFEG---------HEAPV----YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P------GNWCTMMA 545 (1132)
Q Consensus 487 ~~~~~~---------h~~~v----~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~------~~~v~~~~ 545 (1132)
...-.. +...+ ....+. ..++..++.++.++.+.+++..+......... . ...-.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEEE-eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 321100 00000 000111 12345666666666666666655432221100 0 00111222
Q ss_pred -EcCCCCEEEEEecCCCC----CCeEEEEeCCC---Cceeeeecc--ccCCceEEEEEeCCCCEEEEEEcC---------
Q 001176 546 -YSADGTRLFSCGTSKEG----ESHLVEWNESE---GAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDE--------- 606 (1132)
Q Consensus 546 -~s~~~~~l~~~~~~~~~----~~~i~~wd~~~---~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d--------- 606 (1132)
-..+++.++.++..... .....+.+... ......... .....-.+....++++.++.||.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 23466777776642211 12233333322 111111111 011122345567889988888743
Q ss_pred --CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 607 --FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
..+.+||..+.+-...-........-....+.+||+.++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899887764332222111001123446789999999884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.59 E-value=0.045 Score=54.28 Aligned_cols=223 Identities=10% Similarity=0.023 Sum_probs=141.3
Q ss_pred CCcCeEEEEEcCCCCeEEEE-eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 404 AAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
+...+..++|.+..+.|..+ ..++.|...+++++.... .+......+.++++..-+.. +.++-...+.|.+.++.
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecC
Confidence 44568889999877777665 456788888888755332 22233356889999876664 34455667899999987
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
.......+.........++++|.. |.++.+-...+. |..-+++...........-.....+++.+.++.|..+..
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~-- 186 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA-- 186 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET--
T ss_pred CceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC--
Confidence 554433333344678899998764 234444333233 444455544444444444456789999998888877642
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
+.+.|...|+........+.+.. ....+++. +.+|+... ..+.|...|..+++.+..+..... .....+++.+
T Consensus 187 -~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v~~ 260 (263)
T d1npea_ 187 -GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIAL 260 (263)
T ss_dssp -TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEEC
T ss_pred -CCCEEEEEECCCCCeEEEECCCC--CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEEeC
Confidence 46789999987655444444433 24567765 45666554 678899999999988776643332 2445666554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.047 Score=54.32 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=142.8
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe----EEEEecCCCC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHEA 495 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~h~~ 495 (1132)
|+.+.. ..|+..++++..... +......+.+++|.+..+. +..+-...+.|.-.++.... ....+.....
T Consensus 4 Ll~s~~-~~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 4 LFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp EEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCCCccee----eeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 444433 348888888754332 2234556789999988774 34444556777766654321 1122333345
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
.+.++++.+... .+..+-...+.|.+.+++.................+++.|...+|..... ...+.|...++....
T Consensus 78 ~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dGs~ 154 (266)
T d1ijqa1 78 APDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD 154 (266)
T ss_dssp CCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCC
T ss_pred CcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCCCc
Confidence 577788876543 56666677889999999877666666656667889999987766665532 124567777776443
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGI 653 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 653 (1132)
.. .+....-.....+++++.++.|+.+. ..+.|...++...................++++. +..|+.. ..++.|
T Consensus 155 ~~-~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I 231 (266)
T d1ijqa1 155 IY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI 231 (266)
T ss_dssp EE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred ee-cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeE
Confidence 33 33222222578899999888877764 6688999999765544444433333334566666 3344444 467788
Q ss_pred EEEEcCCcc
Q 001176 654 KILANSDGV 662 (1132)
Q Consensus 654 ~iw~~~~~~ 662 (1132)
...+..++.
T Consensus 232 ~~~~~~~g~ 240 (266)
T d1ijqa1 232 FSANRLTGS 240 (266)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 888877773
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=7.5e-05 Score=66.46 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=69.5
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+++.+.||||+.+|+.++|..|+++.-..+...+.+++++|+.+....++.+++....++. ++.+
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s 119 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHH
Confidence 4455 9999999999999999999999999998877777778999999999999999988888777765 3555
Q ss_pred HHHHHHHHHh
Q 001176 140 RNIMLVELKK 149 (1132)
Q Consensus 140 r~~l~~~l~~ 149 (1132)
-..|+..|++
T Consensus 120 ~~lLl~~L~~ 129 (149)
T d2nxpa1 120 YQLLKRHLQE 129 (149)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6677777754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.49 E-value=0.02 Score=61.21 Aligned_cols=261 Identities=11% Similarity=0.059 Sum_probs=132.1
Q ss_pred ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-C-CeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCC
Q 001176 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G-GKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNN 892 (1132)
Q Consensus 816 ~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-d-g~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~ 892 (1132)
.+||+.++.-.........+ .......++.+||++++.|+ + ..+.+||..+..-...-.... ..-.+.+..+ +++
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~ 132 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGR 132 (387)
T ss_dssp EEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSC
T ss_pred EEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCc
Confidence 35666665432211111112 33345678889999999987 3 679999998765432211111 1224566677 888
Q ss_pred eEEEEeCC------CcEEEEEcccceeee--ee-------cccc-----CCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 893 IIAIGMED------SSVQIYNVRVDEVKT--KL-------KGHQ-----NRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 893 ~lasg~~d------g~v~iwd~~~~~~~~--~l-------~~h~-----~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
+++.|+.+ ..+.+||..+.+-.. .. ..+. +.-..+...++|+.++.++.++.+.+++..+
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 99888753 368999988764211 10 0010 0111233456778888887777777777776
Q ss_pred cccccceeeeCCCCCCCCCCCceeEEE-CCCCcEEEEEe-C--------CeEEEEeC---CCCceeecC-CCCCCCCCeE
Q 001176 953 WEKLKSRFIQAPAGRQSPLVGETKVQF-HNDQTHLLVVH-E--------SQISVYDS---KLECSRSWS-PKDALPAPIS 1018 (1132)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~dg~~l~~~~-d--------~~v~vwd~---~~~~~~~~~-~~~~h~~~i~ 1018 (1132)
..-..................-.++.+ ..+++.++.+. . ....+.+. ......... ....+...-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 292 (387)
T d1k3ia3 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH 292 (387)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc
Confidence 543221111111111110011123333 45677777632 1 12333433 111111111 1111122233
Q ss_pred EEEEccCCCEEEEEecCC-----------cEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEe
Q 001176 1019 SAIYSCDGLLVYAGFCDG-----------AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM 1087 (1132)
Q Consensus 1019 ~i~~s~dg~~las~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 1087 (1132)
+....+||+++++|+.+. ++.+||.++.+-.. +. ....+. ..|+. ....+ |+++++.|+
T Consensus 293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~-~~~~~R---~~Hs~----a~l~~-dG~v~v~GG 362 (387)
T d1k3ia3 293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QN-PNSIVR---VYHSI----SLLLP-DGRVFNGGG 362 (387)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CC-CCSSCC---CTTEE----EEECT-TSCEEEEEC
T ss_pred eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE-CC-CCCCcc---cceEE----EEECC-CCEEEEEeC
Confidence 556668999999988542 47889988775321 11 100111 13422 22345 889999888
Q ss_pred C
Q 001176 1088 S 1088 (1132)
Q Consensus 1088 ~ 1088 (1132)
.
T Consensus 363 ~ 363 (387)
T d1k3ia3 363 G 363 (387)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.48 E-value=0.034 Score=62.30 Aligned_cols=194 Identities=10% Similarity=0.069 Sum_probs=114.1
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCC----------Ce-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA----------PV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~----------~v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
.|+.++.++.|.-.|.++|+.+-++..... .+ ..++. .+..++.+..|+.+.-.|..+++.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce----eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 366677788999999999999887642111 00 11111 1256888899999999999888887765
Q ss_pred cCCCC-eEEEEEEcC--CCCEEEEEec--CCCCCCeEEEEeCCCCceeeeecccc-------------------------
Q 001176 535 DAPGN-WCTMMAYSA--DGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFR------------------------- 584 (1132)
Q Consensus 535 ~~~~~-~v~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------- 584 (1132)
..... ....+.-.| .+..++.+.. .....+.|+-+|.++|+.+..+..-.
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 43221 100111111 1223333322 11234679999999999988775311
Q ss_pred ----CC-ceEEEEEeCCCCEEEEEEc-------------------CCeEEEEECCCCeeEEEEeCCCCCC-------Ccc
Q 001176 585 ----KR-SLGVVQFDTTRNRFLAAGD-------------------EFQIKFWDMDNMNMLTTVDADGGLP-------ASP 633 (1132)
Q Consensus 585 ----~~-~v~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~-------~v~ 633 (1132)
.. .-..+++.+....++.+.. ...|.-.|+++++....++...+.. ...
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 00 1223567777776665321 2457777899999887765433210 001
Q ss_pred eEEEcCCC---CEEEEEeCCCcEEEEEcCCcce
Q 001176 634 RLRFNKEG---SLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 634 ~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
-+....++ ..++.++.+|.+.++|..+++.
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~ 336 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence 11222234 3667788899999999999943
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.45 E-value=0.048 Score=61.13 Aligned_cols=238 Identities=13% Similarity=0.066 Sum_probs=134.3
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEc------CCCcEEEEECCCCeEEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~------~dg~v~vwd~~~~~~~~~ 489 (1132)
+..|+.++.|+.+.-.|.++|+..........+. ..++.--.-.++. ++.+. .+|.|+-+|+.+|+.+.+
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 191 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe---EEEeeccccccccCcEEEEECCCCcEEEE
Confidence 4467778899999999999998654332211111 1222211222343 44444 378899999999999876
Q ss_pred ecCCC-------------------------------------CCeE-EEEeeccCCccEEEEEec---------------
Q 001176 490 FEGHE-------------------------------------APVY-SVCPHHKESIQFIFSTAI--------------- 516 (1132)
Q Consensus 490 ~~~h~-------------------------------------~~v~-~i~~~~~~~~~~l~s~s~--------------- 516 (1132)
+.... ..++ ..++.+.. .++..+..
T Consensus 192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~--g~~y~~tg~~~p~~~~~r~g~n~ 269 (571)
T d2ad6a1 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL--NLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCT
T ss_pred EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhc--CeeeeecccccCccccccccccc
Confidence 54211 1121 12333332 34443332
Q ss_pred -CCeEEEEEcCCCCceEEecCCCC---------eEEEEEEcCCCCE---EEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 517 -DGKIKAWLYDYLGSRVDYDAPGN---------WCTMMAYSADGTR---LFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 517 -dg~i~~wd~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~---l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
...+.-.|.++++....+....+ .........+++. ++.. .+++.++++|..+|+.+......
T Consensus 270 ~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~----~k~G~l~vlDr~tG~~i~~~~~~ 345 (571)
T d2ad6a1 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI----DRNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE----CTTSEEEEEETTTCCEEEEEESS
T ss_pred cccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeec----cccceEEEEecCCCcEeeeeccC
Confidence 24566678888777765543222 1111222234432 2233 25788999999999876432111
Q ss_pred c-------------------------------------C-CceEEEEEeCCCCEEEEEEcC-------------------
Q 001176 584 R-------------------------------------K-RSLGVVQFDTTRNRFLAAGDE------------------- 606 (1132)
Q Consensus 584 ~-------------------------------------~-~~v~~~~~~~~~~~l~~~~~d------------------- 606 (1132)
. . ..-...+++|+...++....+
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~ 425 (571)
T d2ad6a1 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccc
Confidence 0 0 001125677777766653322
Q ss_pred ------------------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 607 ------------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 607 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
|.|.-+|+.+++.+-....... ..+-..+-.+.++++|+.||.++.+|.++|+.+.+
T Consensus 426 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~ 500 (571)
T d2ad6a1 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 4677888888888876653321 12212233466888899999999999999954443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.44 E-value=0.16 Score=56.91 Aligned_cols=193 Identities=12% Similarity=0.048 Sum_probs=111.2
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCC--------CCe-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE--------APV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~--------~~v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 536 (1132)
.|+.++.++.|.-.|..+|+.+-++.... ..+ ..+++. +..++.++.|+.+.-.|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe----CCceEEecCCCeEEEecccccceeeeecc
Confidence 46777888999999999999987764211 001 112221 25677889999999999998887654332
Q ss_pred CCC--------eEEEEEEcCCCCEEEEEecC---CCCCCeEEEEeCCCCceeeeeccccC--------------------
Q 001176 537 PGN--------WCTMMAYSADGTRLFSCGTS---KEGESHLVEWNESEGAIKRTYSGFRK-------------------- 585 (1132)
Q Consensus 537 ~~~--------~v~~~~~s~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~~~~~-------------------- 585 (1132)
... ......--..+..++..+.. ....+.|.-+|.++|+.+..+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 111 00001101123333333211 11245688899999988776533211
Q ss_pred -------------------C-ceEEEEEeCCCCEEEEEEc------------------------CCeEEEEECCCCeeEE
Q 001176 586 -------------------R-SLGVVQFDTTRNRFLAAGD------------------------EFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 586 -------------------~-~v~~~~~~~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~ 621 (1132)
. ....+++.+....++.+.. ...+.-.|..+++..-
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 0 1223677777777776531 2357777888998887
Q ss_pred EEeCCCCCCCc-------ceEEEc-CCCC---EEEEEeCCCcEEEEEcCCcc
Q 001176 622 TVDADGGLPAS-------PRLRFN-KEGS---LLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 622 ~~~~~~~~~~v-------~~~~~s-~~~~---~l~~~~~dg~i~iw~~~~~~ 662 (1132)
.++...+.... .-+.+. .++. .++..+.++.+.++|..+++
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~ 357 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc
Confidence 77643321110 111111 1332 56667789999999999983
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=97.27 E-value=0.0001 Score=63.84 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=66.0
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+++.+.||||+.+|+.++|..|+++.-..+. .+.+++++|+.+..+.++.+++....+++ ++.+
T Consensus 23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s 100 (131)
T d2j4ba1 23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 100 (131)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHH
Confidence 4455 9999999999999999999999999998766664 47889999999999988888777665543 4566
Q ss_pred HHHHHHHHHhh
Q 001176 140 RNIMLVELKKL 150 (1132)
Q Consensus 140 r~~l~~~l~~~ 150 (1132)
-..|+..|++.
T Consensus 101 ~~lL~~fL~~~ 111 (131)
T d2j4ba1 101 FDLLINFLEER 111 (131)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 67778888763
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.24 E-value=0.087 Score=59.17 Aligned_cols=237 Identities=13% Similarity=0.049 Sum_probs=134.1
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccC-CEEEEEEecCCCcEEEEEEc------CCCcEEEEECCCCeEEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG-GVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~-~v~~v~~s~d~~~~~l~s~~------~dg~v~vwd~~~~~~~~~ 489 (1132)
+.+++.++.|+.|.-.|.++|+.+.....-..+.. .++.--.--++ .++.+. ..|.|+-+|+.+|+.+-+
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~---~vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD---KVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT---EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECC---eEEEeeccccccccCceEEEECCCCcEEEE
Confidence 34788899999999999999987654322111111 12111111133 345443 358999999999999877
Q ss_pred ecCCC-------------------------------------CCe-EEEEeeccCCccEEEEEec---------------
Q 001176 490 FEGHE-------------------------------------APV-YSVCPHHKESIQFIFSTAI--------------- 516 (1132)
Q Consensus 490 ~~~h~-------------------------------------~~v-~~i~~~~~~~~~~l~s~s~--------------- 516 (1132)
+.... ..+ ..+++.+.. .++..+..
T Consensus 198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~--~lvy~~tg~~~p~~~~~r~g~n~ 275 (596)
T d1w6sa_ 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT--NLIYFGTGNPAPWNETMRPGDNK 275 (596)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCT
T ss_pred eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCC--Ceeeccccccccccccccccccc
Confidence 54210 111 122333333 34443322
Q ss_pred -CCeEEEEEcCCCCceEEecCCCC---------eEEEEE-EcCCCC---EEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 517 -DGKIKAWLYDYLGSRVDYDAPGN---------WCTMMA-YSADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 517 -dg~i~~wd~~~~~~~~~~~~~~~---------~v~~~~-~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
...|.-.|+++++....+....+ ....+. ...+|+ .++.. ++++.++++|..+|+++.....
T Consensus 276 ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~----~k~G~~~vlDr~tG~~i~~~~~ 351 (596)
T d1w6sa_ 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHP----DRNGIVYTLDRTDGALVSANKL 351 (596)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEE----CTTSEEEEEETTTCCEEEEEES
T ss_pred ccccccccccccccccccccceeccccCCccccceeeeeccccccccccceecc----ccccceeeecCCCCceeeeccc
Confidence 23466778888887765543221 111111 233443 23333 3578899999999987754321
Q ss_pred ccC--------------------------------------CceEEEEEeCCCCEEEEEEc-------------------
Q 001176 583 FRK--------------------------------------RSLGVVQFDTTRNRFLAAGD------------------- 605 (1132)
Q Consensus 583 ~~~--------------------------------------~~v~~~~~~~~~~~l~~~~~------------------- 605 (1132)
... ..-...+++|+...++....
T Consensus 352 ~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~ 431 (596)
T d1w6sa_ 352 DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFF 431 (596)
T ss_dssp STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccc
Confidence 000 00112456666655554321
Q ss_pred --------------------CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceee
Q 001176 606 --------------------EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 665 (1132)
Q Consensus 606 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1132)
-|.|.-||+.+++.+-...... ....-.++..|.+++.|+.||.++.+|..+|+.+.
T Consensus 432 ~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~---~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW 508 (596)
T d1w6sa_ 432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (596)
T ss_dssp CCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCC---CCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence 1568888888888876654332 22232334457788899999999999999994443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.18 E-value=0.13 Score=57.66 Aligned_cols=102 Identities=12% Similarity=-0.006 Sum_probs=61.5
Q ss_pred CCeEEEEeCCCCceeeeeccccC---------Cce-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRK---------RSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~---------~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
++.|+-+|.++|+.+.++..... ..+ ..+.+. ...++.++.|+.+.-.|..+|+.+.......+...-
T Consensus 86 ~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~ 163 (573)
T d1kb0a2 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGS 163 (573)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSS
T ss_pred CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccCccCCcce
Confidence 56699999999998887642211 011 112232 346777888999999999999998766543221111
Q ss_pred ceEEEcC--CCCEEEEEeC------CCcEEEEEcCCcceeee
Q 001176 633 PRLRFNK--EGSLLAVTTS------DNGIKILANSDGVRLLR 666 (1132)
Q Consensus 633 ~~~~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~ 666 (1132)
..+.-.| -+..+++++. .|.|+.+|..+|+.+.+
T Consensus 164 ~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 205 (573)
T d1kb0a2 164 LTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (573)
T ss_dssp CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEeecceEEEeccEEEeeccccccccceEEEEecCCccceee
Confidence 1111111 1334555533 46899999999954443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.16 E-value=0.14 Score=54.99 Aligned_cols=249 Identities=10% Similarity=0.035 Sum_probs=133.5
Q ss_pred CeeEEEEccCCCeEEEEEcCC----CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.+..+++||||++++++-+.+ ..+++.|+.+|+.+.. .+ .......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-------------------~~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-------------------ERVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-------------------EEECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-------------------ccccccceEEcCCCCEE
Confidence 345668899999766554433 4799999999986532 01 01112468999999988
Q ss_pred EEEeCC----------------CeEEEEEecCCCceeeeeeeecc--cCCEEEEEEecCCCcEEEEEEc-CCCcEEEE--
Q 001176 421 GVAFSK----------------HIVHLYTYNPTGELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCG-DDKMIKVW-- 479 (1132)
Q Consensus 421 as~~~d----------------g~i~iwd~~~~~~~~~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vw-- 479 (1132)
+-...+ ..|..|.+.+...-. ...+... ...+..+..+++++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 754332 257777776653321 1123332 2346677889999853222332 23344444
Q ss_pred ECCCCe--------EEEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCeEEEEE
Q 001176 480 DVVAGR--------KQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMA 545 (1132)
Q Consensus 480 d~~~~~--------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~ 545 (1132)
|+.... ....+........-+.. .+ +.+++... .++.|...++..... ...+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--EG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--CC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 543221 11222222233332221 11 13333332 346677777765443 223333444454444
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCee
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 619 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1132)
++..+.+|+.... .++...|++++..++.....+.... +.+..+...++...+...- .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 4445556655432 1356779999998887655443322 2455555555555444322 347788899988754
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.14 E-value=0.14 Score=57.12 Aligned_cols=283 Identities=10% Similarity=0.074 Sum_probs=153.5
Q ss_pred EEEEcCCCcEEEEecCCCccccccceeeeecccccc--cccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC
Q 001176 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM--PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 359 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~ 436 (1132)
+..++.++.|.-.|..+|+.+ |..+.... ............. ++. .+..++.+..++.|.-.|..+
T Consensus 69 vyv~t~~~~v~AlDa~tG~~l-------W~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~v~~~~~~g~l~Alda~t 136 (560)
T d1kv9a2 69 IYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVKARTSCCDAVNRG---VAL--WGDKVYVGTLDGRLIALDAKT 136 (560)
T ss_dssp EEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGGGGGCTTCSCCCC---CEE--EBTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCeEEEEeCCCCCEE-------EEECCCCCccccccccccccccC---cce--eCCeEEEEeCCCEEEEEECCC
Confidence 455566788888899998764 43321110 0011111111111 111 245677888889998899888
Q ss_pred CCceeeeeeeecccC--CEEEEEEecCCCcEEEEEEc------CCCcEEEEECCCCeEEEEecCC---------------
Q 001176 437 TGELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEGH--------------- 493 (1132)
Q Consensus 437 ~~~~~~~~~l~~h~~--~v~~v~~s~d~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~h--------------- 493 (1132)
|+.+..... ..+.. .++..-.--++. ++.+. ..|.|.-+|.++|+.+-++..-
T Consensus 137 G~~~w~~~~-~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~ 212 (560)
T d1kv9a2 137 GKAIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELRE 212 (560)
T ss_dssp CCEEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CcEEeccCc-cCcccceeeeeeeeeecCc---ccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccc
Confidence 886653321 11111 111111112333 34433 2367999999999998776421
Q ss_pred ---------------CCCeE-EEEeeccCCccEEEEEec-------------------CCeEEEEEcCCCCceEEecCCC
Q 001176 494 ---------------EAPVY-SVCPHHKESIQFIFSTAI-------------------DGKIKAWLYDYLGSRVDYDAPG 538 (1132)
Q Consensus 494 ---------------~~~v~-~i~~~~~~~~~~l~s~s~-------------------dg~i~~wd~~~~~~~~~~~~~~ 538 (1132)
...++ .+++.+.. .++..+.. ...|.-.|+++++.+..+....
T Consensus 213 ~~~~~~~~~~~~~~~G~~~W~~~s~D~~~--~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~ 290 (560)
T d1kv9a2 213 AAKTWQGDQYWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP 290 (560)
T ss_dssp HHTTCCSSCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred ccccccccccccccCCCCccccccccccc--CeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccc
Confidence 01121 12333332 33332211 2345666777777665443322
Q ss_pred Ce---------EEEEEEcCCCC--EEEEEecCCCCCCeEEEEeCCCCceeeeeccccC----------------------
Q 001176 539 NW---------CTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---------------------- 585 (1132)
Q Consensus 539 ~~---------v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 585 (1132)
+. ..-+....+++ .++... .+++.++++|..+|+++........
T Consensus 291 ~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~---~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 367 (560)
T d1kv9a2 291 GDSWDFTATQQITLAELNIDGKPRKVLMQA---PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (560)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEEC---CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred cccccccccceeeeeeeecCCceeeeeeec---CccceEEEEecCCCcccccccccccccccccChhhcccccccccccc
Confidence 21 11122222332 233322 3588899999999988754322110
Q ss_pred -------------CceEEEEEeCCCCEEEEEEc------------------------------------CCeEEEEECCC
Q 001176 586 -------------RSLGVVQFDTTRNRFLAAGD------------------------------------EFQIKFWDMDN 616 (1132)
Q Consensus 586 -------------~~v~~~~~~~~~~~l~~~~~------------------------------------dg~i~iwd~~~ 616 (1132)
......+++|+...++.... .|.|.-||+.+
T Consensus 368 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~t 447 (560)
T d1kv9a2 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (560)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred ccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCC
Confidence 00123567777776665432 25688899999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceee
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 665 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1132)
++.+-....... ...-.++-.+.+++.|+.||.++.+|..+|+.+.
T Consensus 448 Gk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 448 QKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (560)
T ss_dssp TEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence 998887765432 2222334457788899999999999999995443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.07 E-value=0.066 Score=57.78 Aligned_cols=248 Identities=8% Similarity=0.012 Sum_probs=128.9
Q ss_pred CCcCeEEEEEcCCCCeEEEEe-CC----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-------
Q 001176 404 AAISVNRCVWGPDGLMLGVAF-SK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------- 471 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~-~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~------- 471 (1132)
+.-.+..+++|||++++|.+- .. ..|+++|+.+++.+... +. ......++|++|++. ++++.-
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--LE--RVKFSCMAWTHDGKG-MFYNAYPQQDGKS 197 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--EE--EECSCCEEECTTSSE-EEEEECCCCSSCC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--cc--cccccceEEcCCCCE-EEEEEeccccCcc
Confidence 344455678999999998652 22 36999999998765422 22 112357899999995 333331
Q ss_pred --------CCCcEEEEECCCCeE--EEEecCCCC--CeEEEEeeccCCccEEEEEec---CCeEEEE--EcCCCCc----
Q 001176 472 --------DDKMIKVWDVVAGRK--QYTFEGHEA--PVYSVCPHHKESIQFIFSTAI---DGKIKAW--LYDYLGS---- 530 (1132)
Q Consensus 472 --------~dg~v~vwd~~~~~~--~~~~~~h~~--~v~~i~~~~~~~~~~l~s~s~---dg~i~~w--d~~~~~~---- 530 (1132)
....|..|.+.+... ...+..... .+..+..+. ++.+++.... +....+| |+.....
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~--d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC--CcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 123577887776532 233333333 344454443 4466654322 3334444 4433211
Q ss_pred ----eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--eeeeccccCCceEEEEEeCCCCEEEEEE
Q 001176 531 ----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 531 ----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1132)
............-+. . +|..++.-+.....++.|...++..... ...+-.+....+..-.+...+.+|+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~ 353 (430)
T d1qfma1 276 ILKWVKLIDNFEGEYDYVT-N-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (430)
T ss_dssp SCCCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ccceeEeecccccceEEEe-c-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence 111222222222222 2 3333433332222456777777765432 1222222222344334444456666543
Q ss_pred -cCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCcc
Q 001176 605 -DEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 662 (1132)
Q Consensus 605 -~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1132)
.++ .|++++..++.......... ..+..+...++...+..... =.++.-+|+.++.
T Consensus 354 ~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 354 LHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 454 58889998887765544332 24555555555554444332 2678889988873
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.92 E-value=0.49 Score=52.73 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=47.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCC------CCc-ceEEEcCCCCEEEEEeCCCcEEEEEcCCcceee
Q 001176 597 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PAS-PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 665 (1132)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1132)
+..|++++.++.|.-.|..+|+.+-.+...... ..+ ..++.. +..++.++.++.+...|..+++.+.
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W 141 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVW 141 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEE
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceee
Confidence 457788888999999999999999887533110 001 122222 4567889999999999999995544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.86 E-value=0.24 Score=48.20 Aligned_cols=233 Identities=8% Similarity=0.091 Sum_probs=136.9
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY 488 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~~ 488 (1132)
+.-.+|..+.||.=+ ..++.++|+++.+.++.. ....+|.--.|-.+.. |+-.+ +..|+-|+++. ..+.+
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~----~~~e~VvfWkWis~~~---L~lVT-~taVYHW~~~g~s~P~k 137 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH----TMTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVK 137 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE----ECSSCCCEEEESSSSE---EEEEC-SSEEEEEESSSSCCCEE
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceE----EcCCCcEEEEecCCCE---EEEEc-CCceEEEcccCCCCchh
Confidence 344667777777655 457999999997766532 1345777778876654 44333 55899999853 34566
Q ss_pred EecCCCC--CeEEEEeeccCCccEEEEEe-------cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC---CEEEEE
Q 001176 489 TFEGHEA--PVYSVCPHHKESIQFIFSTA-------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---TRLFSC 556 (1132)
Q Consensus 489 ~~~~h~~--~v~~i~~~~~~~~~~l~s~s-------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~ 556 (1132)
.|..|.. ...-+.+..+.+.++++..+ -.|.+.+|..+.. ....+.+|......+.+..+. +.++.+
T Consensus 138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 216 (327)
T d1utca2 138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFA 216 (327)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred hhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEE
Confidence 6655542 22223333344556654432 2467889987643 334455554444443332211 223333
Q ss_pred ecCCCCCCeEEEEeCCCCc---e---ee--eec--c-ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 557 GTSKEGESHLVEWNESEGA---I---KR--TYS--G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~---~---~~--~~~--~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
.. +...+.+++.++.... . .+ .+. . ....-.-++..++....++..+.-|.|++||+.++.++..-..
T Consensus 217 ~r-~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI 295 (327)
T d1utca2 217 VR-GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 295 (327)
T ss_dssp EE-ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EC-CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec
Confidence 22 1234678998886521 1 11 111 1 1111345688898889999999999999999999999987765
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001176 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1132)
... .|...+-..+..=++....+|.|..
T Consensus 296 s~~--~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 296 SGE--TIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp CSS--CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred CCC--ceEEeccCCCCceEEEECCCCeEEE
Confidence 533 5554444444444555556776543
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.85 E-value=0.0003 Score=61.04 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+++.+.||||+..+. .+|..|+++.-..+...+.+++++|+.+..+.++.+++....+++ ++.+
T Consensus 25 EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s 102 (134)
T d2j49a1 25 ELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 102 (134)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHH
Confidence 5544 999999999999999875 679999998877776678899999999999988888877766654 4666
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~ 179 (1132)
-..|+..|++.-.. -.+-+..+|+|.+
T Consensus 103 ~~lLl~fL~~~~~~-------------g~~~il~ii~~~l 129 (134)
T d2j49a1 103 LNLLLYFLNENESI-------------GGSLIISVINQHL 129 (134)
T ss_dssp HHHHHHHHHHTGGG-------------THHHHHHHHHHHE
T ss_pred HHHHHHHHHhcccc-------------hHHHHHHHHHHhc
Confidence 67788888763221 1234777887764
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.58 E-value=0.00085 Score=49.99 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc--HHHHHHHHhcccHHHHHHHh
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYL 57 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l 57 (1132)
++|+.+-|++||..+||.+++.+|++|..+.++ ...-..-+++-+|..+..+=
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQ 61 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQ 61 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHH
Confidence 578999999999999999999999999998775 45556678888997776643
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.73 E-value=1.4 Score=39.67 Aligned_cols=221 Identities=12% Similarity=0.162 Sum_probs=119.6
Q ss_pred CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001176 354 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 433 (1132)
Q Consensus 354 dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd 433 (1132)
++..+++++...|.|.++-+..++.+.- ...+|....- |.. +-|..+.+-|
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkL----------------------tkePI~~~~~-Pk~------~ldfi~f~RD 74 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKL----------------------NREPINSVLD-PHY------GVGRVILVRD 74 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEEC----------------------CSSCCSEECE-ECT------TBSEEEEEEE
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEE----------------------ecccccCcCC-Ccc------CcceEEEEee
Confidence 3445788888899999999988876542 1222221111 110 1122233444
Q ss_pred ecCCCceeeee-----------eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE--EecCCCCCeEEE
Q 001176 434 YNPTGELRQHL-----------EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSV 500 (1132)
Q Consensus 434 ~~~~~~~~~~~-----------~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~v~~i 500 (1132)
+..|+..+... .+.. ..++.-+...-|+++ .+.+|+......+|-++.|+... .+.+ -+.|+.+
T Consensus 75 V~kGkE~Hai~~~Nlk~~GEE~~i~s-pk~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI 151 (313)
T d2hu7a1 75 VSKGAEQHALFKVNTSRPGEEQRLEA-VKPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDI 151 (313)
T ss_dssp CSTTSCCEEEEEEETTSTTCEEECTT-SCSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEE
T ss_pred hhcCcceeeEEEEccCCCCeeeEecC-CceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEec
Confidence 44444333221 1211 223555555556776 67778777788888888887532 2321 2234433
Q ss_pred --------EeeccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 501 --------CPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 501 --------~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.+...+. .-++++.. .|.++++ ....+.++...++++.+. ++.-.. -+.....-+|+
T Consensus 152 ~~d~I~G~g~~~g~~-~sfF~adl~SG~lri~-----------tpkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~ 217 (313)
T d2hu7a1 152 RGDLIAGLGFFGGGR-VSLFTSNLSSGGLRVF-----------DSGEGSFSSASISPGMKV-TAGLET-AREARLVTVDP 217 (313)
T ss_dssp ETTEEEEEEEEETTE-EEEEEEETTTEEEEEE-----------CCSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECT
T ss_pred cCCeEEEEeeecCCc-ceEEEEecccCCEEEe-----------cCCCCcccceeEccCcee-eeccCC-CCceEEEEEec
Confidence 2221111 22333333 5555555 445567777777777666 443321 23344446688
Q ss_pred CCCceeee------eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEE
Q 001176 572 SEGAIKRT------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 572 ~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1132)
++++..+. +.......|.-+-+.|+++.++.+-.||.-+++. +|+.+..
T Consensus 218 ~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 218 RDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp TTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred ccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence 87664332 2222222455667899999988999999999986 4555443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.71 E-value=2.6 Score=42.54 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=111.0
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec----cCCccEEEEEe-c-C--CeEEEEEcCCCCce-EEecC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH----KESIQFIFSTA-I-D--GKIKAWLYDYLGSR-VDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~----~~~~~~l~s~s-~-d--g~i~~wd~~~~~~~-~~~~~ 536 (1132)
+++.....+-|++||+ +|+.+..+. .+.++.|..-. ......++.++ . + .+|.+|.+...... ..+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5666666667999997 588887764 35666665432 22222344444 2 2 36888887643332 22221
Q ss_pred C-------CCeEEEEEE--cCC-CCEEEEEecCCCCCCeEEEEeCC---CC----ceeeeeccccCCceEEEEEeCCCCE
Q 001176 537 P-------GNWCTMMAY--SAD-GTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 537 ~-------~~~v~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1132)
. ...++.+|+ ++. |...+.... +++.+..|.+. .+ +.++.+.... .+..|.+......
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~---k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~ 193 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG---KEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGS 193 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEc---CCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCc
Confidence 1 124566666 654 555444442 46678777653 23 3455565433 5888999999999
Q ss_pred EEEEEcCCeEEEEECCC-----CeeEEEEeCCCCCCCcceEEEcC--C--CCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 600 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFNK--E--GSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~--~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
|+.+-++..|+.++... +..+.......-...+-.++.-. + |-+|++.-.+++..+||..+....+.
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g 269 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVA 269 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccc
Confidence 99998888777776542 22232222211223556666432 3 33455555578999999876433333
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.55 E-value=2.8 Score=42.27 Aligned_cols=200 Identities=9% Similarity=0.173 Sum_probs=113.0
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeC----C-CCCeEEEEe--CCC--cEEEEEccc-ceeee
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP----Q-DNNIIAIGM--EDS--SVQIYNVRV-DEVKT 915 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp----~-~~~~lasg~--~dg--~v~iwd~~~-~~~~~ 915 (1132)
|+..+++... .+-|++||++ |+.+..+. .+.+..|..-. . ...-+++++ .++ +|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 3455666555 5569999996 77777664 45666555431 0 222344444 223 577887753 22233
Q ss_pred eeccc-------cCCeeEEEE--cCC-CC-EEEEEcCCCcEEEEECCCcc--cccceeeeCCCCCCCCCCCceeEEECCC
Q 001176 916 KLKGH-------QNRITGLAF--SPT-LN-ALVSSGADAQLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 916 ~l~~h-------~~~V~~l~~--spd-g~-~l~s~~~D~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
.+... ...+.++|+ ++. |. +++....+|.+..|.+.... ......++.+.-. ..+..|.+.+.
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde 190 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCC
Confidence 33211 124777777 654 44 45667778999988774322 1222233322211 35788999999
Q ss_pred CcEEEEEe-CCeEEEEeCC---C--CceeecCCCCCCCCCeEEEEEc--cC--CCEEEEEecCCcEEEEeCCC-cceecc
Q 001176 983 QTHLLVVH-ESQISVYDSK---L--ECSRSWSPKDALPAPISSAIYS--CD--GLLVYAGFCDGAIGVFDAET-LRFRCR 1051 (1132)
Q Consensus 983 g~~l~~~~-d~~v~vwd~~---~--~~~~~~~~~~~h~~~i~~i~~s--~d--g~~las~~~dg~i~vwd~~~-~~~~~~ 1051 (1132)
...|.++. +..+..++.. . ..+............+-.+++- ++ |-+||+.-.+++..|||..+ .+.+..
T Consensus 191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 99999975 4445555552 1 1211111122235667777653 33 34556655678899999987 366655
Q ss_pred cC
Q 001176 1052 IG 1053 (1132)
Q Consensus 1052 ~~ 1053 (1132)
|.
T Consensus 271 F~ 272 (353)
T d1h6la_ 271 FQ 272 (353)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.41 E-value=1.9 Score=43.67 Aligned_cols=160 Identities=6% Similarity=0.043 Sum_probs=91.0
Q ss_pred EEEEEEecCCCcEEEEEEc------------CCCcEEEEECCCCeEE-EEe--cCC-----CCCeEEEEeeccCCcc-EE
Q 001176 453 VNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQ-YTF--EGH-----EAPVYSVCPHHKESIQ-FI 511 (1132)
Q Consensus 453 v~~v~~s~d~~~~~l~s~~------------~dg~v~vwd~~~~~~~-~~~--~~h-----~~~v~~i~~~~~~~~~-~l 511 (1132)
-.+++..|||. .+++++ ..|.|.++|+.+.+.. ..+ .+. .-....+.+....++. +|
T Consensus 37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 34567777775 444443 2488999998765432 122 211 1123455544344443 34
Q ss_pred EEEe---cCCeEEEEEcCCCCceEE----ecC-CCCeEEEEEEcCCCCEEEEEecC-------------CCCCCeEEEEe
Q 001176 512 FSTA---IDGKIKAWLYDYLGSRVD----YDA-PGNWCTMMAYSADGTRLFSCGTS-------------KEGESHLVEWN 570 (1132)
Q Consensus 512 ~s~s---~dg~i~~wd~~~~~~~~~----~~~-~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~i~~wd 570 (1132)
++.. ...+|.+|++........ +.. .....+.+++..++.++++--.. +...+.+..||
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 4442 456788888865554322 221 23367889998999888874210 11234455555
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCe
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN 618 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (1132)
.. +......+.. ..+.++++|++++|+++. ..+.|++|++....
T Consensus 195 ~~--~~~~~~~~l~--~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 195 PN--DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SS--CEEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CC--ceEEEcCCCC--ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 43 3322222222 578899999998887765 77889999887543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.02 E-value=2.7 Score=42.93 Aligned_cols=184 Identities=10% Similarity=0.035 Sum_probs=106.7
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCC-----------eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTF-----------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 905 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~-----------~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i 905 (1132)
.....-+++++...++++|+...+.|..++.- ...... ....|..++|+. + .|+.. .++.+..
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYS 109 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEE
Confidence 44567899999888998888667778774311 111111 123689999976 3 45544 4456777
Q ss_pred EEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcE
Q 001176 906 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 985 (1132)
Q Consensus 906 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 985 (1132)
++..+-........-..++..+.++|. .++....++.+.++++..+..... .....+-. ....+.+++|++.|+.
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~--~~~v~~~~-~~~~~~~v~ws~kgkq 184 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL--AQNVTSFD-VTNSQLAVLLKDRSFQ 184 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE--EESEEEEE-ECSSEEEEEETTSCEE
T ss_pred EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc--cCCcceEE-ecCCceEEEEeCCcEE
Confidence 776653333333334456788888774 566677788999999988653211 10000000 0135688899999998
Q ss_pred EEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEE
Q 001176 986 LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1032 (1132)
Q Consensus 986 l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~ 1032 (1132)
++++.++...+-.- ..+...+.........+.+|.|-.+..++++-
T Consensus 185 ~v~~~g~~~q~k~~-i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 185 SFAWRNGEMEKQFE-FSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEETTEEEEEEE-ECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEeCCCceeeccC-CCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 88875544433211 11111111111124568889998777766654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.68 E-value=5.5 Score=40.47 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=106.0
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
....-+++++....+++++.++ +.|..+..-..... ....+........ -..|..++|+.|
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~------------~~~~~~~~~~~~~-----ip~v~~vafs~d- 97 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT------------SDSTPLTFKWEKE-----IPDVIFVCFHGD- 97 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH------------SSSCCCCCSEEEE-----CTTEEEEEEETT-
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhh------------ccCCCCcceeccC-----CCCeEEEEeeCC-
Confidence 3456788888877777777775 55654432100000 0000000000011 235788999754
Q ss_pred CEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec-----cccCCe
Q 001176 850 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GHQNRI 924 (1132)
Q Consensus 850 ~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~V 924 (1132)
.|++..++.+..++..+.............+..+.+.| ..++....+|.+.++++..++...... .-.+.+
T Consensus 98 -~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~ 173 (381)
T d1xipa_ 98 -QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ 173 (381)
T ss_dssp -EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE
T ss_pred -EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCc
Confidence 57777788899898877555445444556678888877 356677789999999998875332211 123567
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEE-ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
.+++|++.|+.++++..++ ..+- ++.... .+....... ..+.++.|-.+..++++
T Consensus 174 ~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~-----~~~~p~~~~---~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 174 LAVLLKDRSFQSFAWRNGE-MEKQFEFSLPS-----ELEELPVEE---YSPLSVTILSPQDFLAV 229 (381)
T ss_dssp EEEEETTSCEEEEEEETTE-EEEEEEECCCH-----HHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred eEEEEeCCcEEEEEeCCCc-eeeccCCCCcc-----ccCCCcCCC---cceeEEEEecCceEEEE
Confidence 8888888888888764332 2111 111111 111111111 35677888777776665
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=2.8 Score=41.03 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=35.2
Q ss_pred CCCEEEEee-C-----CeEEEEECCCCeEEEEeeCCCCCeE-EEEEeCCCCCeEEEEeCCC-----cEEEEEcccc
Q 001176 848 NDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDS-----SVQIYNVRVD 911 (1132)
Q Consensus 848 dg~~la~~s-d-----g~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~ 911 (1132)
+++.++.++ + .....+|..+.+....-........ +++. - ++++++.|+.++ .|.+||+.++
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-H-QGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-E-CCEEEEEecCCCCeecceEEEEECCCC
Confidence 455555554 3 3478888877654332222222222 2333 3 678888887654 3788888865
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.03 E-value=6.9 Score=39.28 Aligned_cols=189 Identities=11% Similarity=0.033 Sum_probs=102.4
Q ss_pred EEEEEcCCCCeEEEEeC------------CCeEEEEEecCCCceeeeeeeeccc-----CCEEEEEE--ecCCCcEEEEE
Q 001176 409 NRCVWGPDGLMLGVAFS------------KHIVHLYTYNPTGELRQHLEIDAHV-----GGVNDIAF--AHPNKQLCIVT 469 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~------------dg~i~iwd~~~~~~~~~~~~l~~h~-----~~v~~v~~--s~d~~~~~l~s 469 (1132)
-+++..|||..+++++. .|.|.++|+.+.........+.+.. -.-..+.. .+||+. +|+.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~v 116 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLLV 116 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEEE
Confidence 36788899987776642 4889999988754432222222110 11223333 456654 4444
Q ss_pred Ec---CCCcEEEEECCCCe--EE--EEecC-CCCCeEEEEeeccCCccEEEEEec---------------CCeEEEEEcC
Q 001176 470 CG---DDKMIKVWDVVAGR--KQ--YTFEG-HEAPVYSVCPHHKESIQFIFSTAI---------------DGKIKAWLYD 526 (1132)
Q Consensus 470 ~~---~dg~v~vwd~~~~~--~~--~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~---------------dg~i~~wd~~ 526 (1132)
.. ...+|.+|++.... .. .++.. .....+++++.. ++.+++|-.. -+...+|..+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~--~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec--CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 42 45678888875432 21 23322 224467777765 3467777311 1233444444
Q ss_pred CCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee-ccccCCceEEEEEeCCCCEEEEEE
Q 001176 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1132)
....... .......+.++++||+++|+.+.. ..++|+.|++.....+... ...-......+.+.+++..+.+++
T Consensus 195 ~~~~~~~-~~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 195 PNDVRVV-AEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SSCEEEE-EEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CCceEEE-cCCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 4433322 223346789999999999988764 3667999988643322211 111222455677776444444443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=5.9 Score=38.45 Aligned_cols=110 Identities=7% Similarity=-0.032 Sum_probs=50.8
Q ss_pred cEEEEEecC-----CeEEEEEcCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCCceeeeec
Q 001176 509 QFIFSTAID-----GKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 509 ~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
.+++.|+.+ ..+..||.........-... .....+.+. .+++.++.++.+. ........+|..+.+....-.
T Consensus 150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
T d1zgka1 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 228 (288)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred cceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC
Confidence 455555543 34677776654322211111 111112222 2345555554322 122456788877665433222
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeE
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNML 620 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 620 (1132)
......-.+++ ..+++.++.||.++ .+.+||+.+.+-.
T Consensus 229 ~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 229 MKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 271 (288)
T ss_dssp CSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred ccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEEE
Confidence 11111111222 23567777776443 3788998876543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.07 E-value=2.2 Score=45.21 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=40.2
Q ss_pred CCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC
Q 001176 922 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 922 ~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
...++|+|.|||+++++--..|.|++++..+++.....-+...............++|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4578999999999999876689999998877664332222111111111145678999985
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.08 E-value=5.3 Score=42.07 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee--eec------cccCCeeEEEEcCC
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT--KLK------GHQNRITGLAFSPT 932 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~--~l~------~h~~~V~~l~~spd 932 (1132)
-....+|+|.| +++++++--..|.|++++..+++... .+. .-......|+|+|+
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 35678999999 88888766557999999877764322 221 11345788999986
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=86.53 E-value=15 Score=35.29 Aligned_cols=221 Identities=12% Similarity=0.099 Sum_probs=103.6
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...|..|+-... +.++. . ||.|.-|-.....++... ......|..++--. ...++
T Consensus 25 ~~~i~~va~G~~--h~~al-~-dG~v~~wG~N~~GQlG~~-------------------~~~~~~v~~v~~G~-~~~~a- 79 (273)
T d1jtdb_ 25 QSGVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMP-------------------AATQSGVDAIAAGN-YHSLA- 79 (273)
T ss_dssp SSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTSCC-------------------GGGGSCCCEEEECS-SEEEE-
T ss_pred CCCcEEEEccCC--EEEEE-E-CCEEEEEeCCCCCceeee-------------------ecccccceEEecCC-Cceee-
Confidence 345676655322 33443 3 799999987665444310 01122344444321 11222
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
-.|+.+..|........... ......+..++..... .+.. .|+.+..|.-...............|..++-
T Consensus 80 -l~dg~v~~wG~~~~gq~~~~---~~~~~~~~~i~~~~~~----~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~ 150 (273)
T d1jtdb_ 80 -LKDGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWA----SYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDG 150 (273)
T ss_dssp -EETTEEEEEECCTTSTTCCC---GGGGSSCCEEEEETTE----EEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred -eeeeeeeccCCCcceeeccc---cccccceeEEeeeccc----cccc-ccccceecccCCCCceeeeccCCceEEEEec
Confidence 24888999986543322111 1112334455443321 2222 4888999974432211111112234444432
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-Cceeeeec
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYS 581 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~ 581 (1132)
. ........++.+..|-................|..++.... ..+.-. ++.|+.|=... +++-....
T Consensus 151 ~-----~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-----dG~v~~WG~n~~Gql~~~~~ 218 (273)
T d1jtdb_ 151 G-----VYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-----DGKVIAWGDNRYKQTTVPTE 218 (273)
T ss_dssp C-----SSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-----TTEEEEEECCTTSTTCCCGG
T ss_pred c-----ceeeeeecccceeEeecccCCcccccccccCCccceeccce--eeEEEe-----cCcEEEcCCCCCCccCCCcc
Confidence 1 12223345788999976554443322233446777765433 222221 56688885432 22211111
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1132)
... .|..|+..... .++. .||.|+.|=.
T Consensus 219 -~~~-~v~~I~~G~~~-~~~l--~~g~v~~WG~ 246 (273)
T d1jtdb_ 219 -ALS-GVSAIASGEWY-SLAL--KNGKVIAWGS 246 (273)
T ss_dssp -GGS-SCCEEEECSSC-EEEE--ETTEEEEEST
T ss_pred -CCC-CcEEEEeCcce-EEEE--ECCEEEEECC
Confidence 111 45556654332 3333 4899999953
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.23 E-value=11 Score=33.72 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=72.7
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEE-cCCCCEEEEEec--CCCCCCeEEEEeCCCCceeeeeccccC
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY-SADGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFRK 585 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1132)
.+++.+...|.+.++-+..++.+..... +|..... .+.-.++..+-. -+.+...|++-++...-....+.....
T Consensus 27 ~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~ 103 (313)
T d2hu7a1 27 KLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP 103 (313)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCS
T ss_pred cEEEEEeccceEEEEEEeCCEEEEEecc---cccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCce
Confidence 6888888999999998876655442221 1111110 111122222211 111223344555442222233333321
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-------CCCcceEE-EcCCCCEEEEEeC-CCcEEEE
Q 001176 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLR-FNKEGSLLAVTTS-DNGIKIL 656 (1132)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~-~s~~~~~l~~~~~-dg~i~iw 656 (1132)
-.|.+++.. +.+.+++|+......+|-++.|+.......+.- ..-|..+. +.+...-++++.- .|.++++
T Consensus 104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~ 182 (313)
T d2hu7a1 104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 182 (313)
T ss_dssp BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence 134444443 345666777777788888888775544332211 01122222 2333334555555 7788888
Q ss_pred EcCCc
Q 001176 657 ANSDG 661 (1132)
Q Consensus 657 ~~~~~ 661 (1132)
+...|
T Consensus 183 tpkeG 187 (313)
T d2hu7a1 183 DSGEG 187 (313)
T ss_dssp CCSSE
T ss_pred cCCCC
Confidence 76665
|