Citrus Sinensis ID: 001181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130-
MNDSDSFFNKTNNNKRSGENYLPSSISSPRGKSIIVSKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLVGTMASSGHSQGSVSSGTRSKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTKFPGRSSIDGELKVKKIERISQQERKPCDESIYVGQPGSITFEDERVVDLEAEGDPVDPCVHNDHLHHKDSVGISNKNATPGVKSKLLNSVDRQNATHFGSMDKSKSLGSSCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRPATAQAMREALTELYEQQRSIIVEPAEEMMEIPDEEEELEATDYVGEEKEEEKAYADKLWSEVDSSQSS
ccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccEEcccccccccEEEcccccccccEEEEEcccccEEEEEcccccccccHHHHHHHHHcccccccccccccccEEEEEEcccEEEccEEEccccEEEEcccccEEEEEccccccccccEEEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHccccHHHHHHHccccccccEEEEEccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEEcccEEEEEEcccccHHHHcccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEEccccccccccEEEEEccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHccccHHHHHHHHHccccccHHHHcccEEccccccccccccccccccHHHHHHHHHcccccccccccEEEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEcccHHHHHHcccccccccccccccHHHHHHcccHHHccccccccccccccccccEEEEEEEcccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEccEEEEEcccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccc
cccccccccccccccccccccccccccccccccHHHHHEEEEEEccccccEEcccccccccEEEEccccccEcccccccccEEEccccccHcccEEEEcccccEEEEEccEEEEccHHHHHHHHHHHHHcHHcccccccccEEEEEcccEEEEccEEEccccEEEEEcccEEEEEEccccccccccEEEEEEEEEEEEEEEEcccccHHEEEccccccccEEEccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccEEcccccccccccHHHcccccccccccccccccccHcccccHHHHHcccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccEEHHHHHccccHHHHHHHHHHHccHHHHHHHccccccccEEEEEEcccccccccccccccccccccccEEEEcccccccEEcccccccccccccccEEEEEEccccEEEEEEcccccHHHHcccccEEEEcccccccccccHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHccEEEHHEHcccccccccccccHHHHHHHHHHHcccccccccEEEEEEcccccccccccEEEEEccccccccccccEcccccHHHHHHHccccccccEEEEEEEcHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHHHcccccccccccccccccccEcccccccccccEEEEcccccEccccccccccccEEEccccccccccccccHHcccccccccccccccEEEEEEEcccccccccEEEEEEcccccHHHcccccccccccccccccccccccccEEEEEEEEEEEEEEcccccccccccccccccccccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHccccccc
mndsdsffnktnnnkrsgenylpssissprgksiivSKTAVVRLQILHlplvstatgspvdsltlepdrpysigrasincdftfdnrlvsRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRdksledeeedegFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEevvlkrprlvgtmassghsqgsvssgtrsKRVFALrendvsnpdsvfpklkrrdifGRASFLLSQCRnilnsndpvscIQQIansdmgimstygcfstkfpgrssidgelKVKKIERISqqerkpcdesiyvgqpgsitfedervvdleaegdpvdpcvhndhlhhkdsvgisnknatpgvkskLLNSVdrqnathfgsmdkskslgsscsppgkkfylnrlefmdltslnydvislpellypveSISRMFIATFTSDILWFMSyceipshlpvtiachntercwstsadkrtsvpypnfpnlvlvfppfpesvafgenckkqgiachhpklfvlqREDSIRVIVTSANLGAKQWNAVTNTVwwqdfprrcapdylslfvqtpveeinqdsrSDFTAQLASFMASLVIDVPSQAHWIVELTKYdfasaaghlvasvpgihsyrnpnlsestyskpvdhgaiwssdgkflgSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRntnvpadanavsvlvpnpdelsdgdciqlgfmprdiakwvsplwdigfirfsgfiSRDEVLAAALEGISKKVQLILHVsqgpkfsdisKMMQIEHVVALSSLIASIQRCRGLWRLQEVLgqyrwpelqesdfsygsssigsINAQFLAAFAAASGkkslrfydseesdpewgcwsasqelrspsiriifPTIERVRNacdgilpskrvlcFSEKTWQRLRNVdilhdaiphphdrvghpmHVKVAWRRFqsrtdtslgwvycgshnfsaaawgrpiqtpstikpngsektkssssqrlhicNYELGivfvfpptekqsstgnntsnlddivlpfvvpapkyrpkdrpaTAQAMREALTELYEQQRSIIvepaeemmeipdeeeeleatdyvgEEKEEEKAYADKLWSEVDSSQSS
mndsdsffnktnnnkrsgenylpssissprgKSIIVSKTAVVRLQILHLPlvstatgspvdsltlEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFllpafssvvnEFRKKrdksledeeedegfsrvMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLVGtmassghsqgsvssgtrSKRVFAlrendvsnpdsvfpklkrrDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTkfpgrssidgelKVKKIerisqqerkpcdesiyvgqpgsitFEDERVVDLEAEGDPVDPCVHNDHLHhkdsvgisnknatpgvKSKLLNSVDRQNAThfgsmdkskslgsscspPGKKFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTsanlgakqwnAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPEWGCwsasqelrspsIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNfsaaawgrpiqtpstikpngsektkssssqrLHICNYELGIVFVFPPTEKQSStgnntsnlddiVLPFVvpapkyrpkdrpATAQAMREALTELYEQQRSIIVEPAEEMMEIPDEEEELEATDYVGEEKEEEKAYADKlwsevdssqss
MNDSDSFFNKTNNNKRSGENYLPSSISSPRGKSIIVSKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLVGTMAssghsqgsvssgTRSKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTKFPGRSSIDGELKVKKIERISQQERKPCDESIYVGQPGSITFEDERVVDLEAEGDPVDPCVHNDHLHHKDSVGISNKNATPGVKSKLLNSVDRQNATHFGSMDKSKSLGSSCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYpnfpnlvlvfppfpESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFsygsssigsiNaqflaafaaaSGKKSLRFYDSEESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRPATAQAMREALTELYEQQRSIIVepaeemmeipdeeeeleaTDYVGeekeeekAYADKLWSEVDSSQSS
*********************************IIVSKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEF****************FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLV************************************FPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTKFPG***************************IYVGQPGSITFEDERVVDL*********CV********************************************************KFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNP******YSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFY*******EWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRP**********************LHICNYELGIVFVFP**************LDDIVLPFVVP******************************************************************************
************************************SKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVL****************************************SVFPKLKRRDIFGRA***********************************************************************************************************************************************************KKFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTE***************PNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRC***********************FTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVD****************TSV*********************************MLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEH**A*****ASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKS************************PSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPST***************RLHICNYELGIVFVFP****************DIVLPFVVPAPKYRPKDRPATAQAMREA*****************************************EKAYADKLWS*V******
********NKTNNNKRSGENYLPSSISSPRGKSIIVSKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNE*****************FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLVGT****************SKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTKFPGRSSIDGELKVKKIERISQQERKPCDESIYVGQPGSITFEDERVVDLEAEGDPVDPCVHNDHLHHKDSVGISNKNATPGVKSKLLNSVDRQNATHFGS***********SPPGKKFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSL*************CWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTI**************RLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAPKY*********QAMREALTELYEQQRSIIVEPAEEMMEIP************************************
********************YLPSSISSPRGKSIIVSKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLVGTMASS*****SVSSGTRSKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTKFPGRSSIDGELKVKKIERISQQERKPCDESIYVGQPGSITFEDERVVDLEAEG********************************************************SCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYL************QDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQT***************SSQRLHICNYELGIVFVFPPTE*********SNLDDIVLPFVVPAPKYRPKDRPATAQAMREALTELYEQQRSIIVEPAEEMMEIPDEEEELEATDYVGEEKEEEKAYADKLWSEV******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNDSDSFFNKTNNNKRSGENYLPSSISSPRGKSIIVSKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLVGTMASSGHSQGSVSSGTRSKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTKFPGRSSIDGELKVKKIERISQQERKPCDESIYVGQPGSITFEDERVVDLEAEGDPVDPCVHNDHLHHKDSVGISNKNATPGVKSKLLNSVDRQNATHFGSMDKSKSLGSSCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRPATAQAMREALTELYEQQRSIIVEPAEEMMEIPDEEEELEATDYVGEEKEEEKAYADKLWSEVDSSQSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1131 2.2.26 [Sep-21-2011]
Q9VQM4580 Probable tyrosyl-DNA phos yes no 0.182 0.355 0.274 4e-05
Q9NUW8608 Tyrosyl-DNA phosphodieste yes no 0.091 0.169 0.260 8e-05
Q4G056609 Tyrosyl-DNA phosphodieste yes no 0.091 0.169 0.234 0.0001
Q8BJ37609 Tyrosyl-DNA phosphodieste yes no 0.125 0.233 0.267 0.0004
>sp|Q9VQM4|TYDP1_DROME Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster GN=gkt PE=2 SV=1 Back     alignment and function desciption
 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 99/244 (40%), Gaps = 38/244 (15%)

Query: 827  GLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPE 886
            G  RL  +L ++  P          SSSIGS+ A  + A+       SL+    ++S P 
Sbjct: 360  GHARLASLLAKHAAPIDDRIPVVCQSSSIGSLGAN-VQAWIQQDFVNSLK----KDSTP- 413

Query: 887  WGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKT-----WQRLRNVDIL 941
                   +  + P  ++I+P+   V  + DG+L     L + + T     W +    D L
Sbjct: 414  -----VGKLRQMPPFKMIYPSYGNVAGSHDGML-GGGCLPYGKNTNDKQPWLK----DYL 463

Query: 942  HDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPN 1001
                     R     H+K ++ RF +  D S+ W    S N S AAWG      S I+P 
Sbjct: 464  QQWKSSDRFRSRAMPHIK-SYTRF-NLEDQSVYWFVLTSANLSKAAWGC-FNKNSNIQPC 520

Query: 1002 GSEKTKSSSSQRLHICNYELGIVFV--FPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRP 1059
                        L I NYE G++F+  F   E     GNN   +    LP+ VP   Y P
Sbjct: 521  ------------LRIANYEAGVLFLPRFVTGEDTFPLGNNRDGVPAFPLPYDVPLTPYAP 568

Query: 1060 KDRP 1063
             D+P
Sbjct: 569  DDKP 572
DNA repair enzyme that can remove a variety of covalent adducts from DNA through hydrolysis of a 3'-phosphodiester bond, giving rise to DNA with a free 3' phosphate. Catalyzes the hydrolysis of dead-end complexes between DNA and the topoisomerase I active site tyrosine residue. Hydrolyzes 3'-phosphoglycolates on protruding 3' ends on DNA double-strand breaks due to DNA damage by radiation and free radicals. Acts on blunt-ended double-strand DNA breaks and on single-stranded DNA. May have low 3'exonuclease activity and may be able to remove a single nucleoside from the 3'end of DNA and RNA molecules with 3'hydroxyl groups. Has no exonuclease activity towards DNA or RNA with a 3'phosphate (By similarity). Required for normal polarization of epidermal cells, correct subcellular location of the Crb complex to the apical lateral membrane, and for normal neuronal development during embryonic development.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: -
>sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2 Back     alignment and function description
>sp|Q4G056|TYDP1_RAT Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BJ37|TYDP1_MOUSE Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1131
2555399871148 tyrosyl-DNA phosphodiesterase, putative 0.954 0.939 0.569 0.0
2241199061131 predicted protein [Populus trichocarpa] 0.940 0.940 0.579 0.0
3594939671091 PREDICTED: uncharacterized protein LOC10 0.920 0.954 0.569 0.0
3021427851032 unnamed protein product [Vitis vinifera] 0.880 0.965 0.553 0.0
2978067691083 predicted protein [Arabidopsis lyrata su 0.926 0.967 0.523 0.0
3575202911064 Tyrosyl-DNA phosphodiesterase [Medicago 0.925 0.984 0.518 0.0
425677211084 forkhead-associated domainand FHA domain 0.891 0.929 0.515 0.0
75761781075 hypothetical protein [Arabidopsis thalia 0.883 0.929 0.508 0.0
147770909 1423 hypothetical protein VITISV_012382 [Viti 0.712 0.566 0.492 0.0
1154581961011 Os04g0403400 [Oryza sativa Japonica Grou 0.625 0.700 0.536 0.0
>gi|255539987|ref|XP_002511058.1| tyrosyl-DNA phosphodiesterase, putative [Ricinus communis] gi|223550173|gb|EEF51660.1| tyrosyl-DNA phosphodiesterase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/1163 (56%), Positives = 819/1163 (70%), Gaps = 84/1163 (7%)

Query: 14   NKRSGENYLPSSISSPRGKSIIVSKTAVVRLQILHLPLVSTATGSPVDSLTLEPDRPYSI 73
            +K+     LP+S      K   ++K+A + LQ L +PL+S ATGSP+DS+ LEPDRPY+I
Sbjct: 23   DKKDNNPLLPTSTCK---KPKQINKSAFIHLQSLDVPLISPATGSPLDSICLEPDRPYTI 79

Query: 74   GRASIN--CDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSS--VVNEFRKK-R 128
            GR+S +  CDF F +R VS+QHCQILFDS  RK+Y+LDG  LL + SS  VV+EFRK+ R
Sbjct: 80   GRSSTDPDCDFVFSDRRVSKQHCQILFDSVNRKVYILDGILLLHSISSIRVVSEFRKRLR 139

Query: 129  DKSLEDEEEDEGFS--RVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQT 186
            +    + EE EGF   R+  S+NGVF+NGIR+K GIVREL  GDEVLFVC +E LC L  
Sbjct: 140  NYDQLEGEEKEGFECLRIRFSMNGVFINGIRVKRGIVRELCTGDEVLFVCGNEGLCNLGV 199

Query: 187  RIGFLILGIIFKEEVV-------LKRPRLVGTMASS-GHSQGSVSSGTRSKRVFALREND 238
            RIGFLI G++FKEEVV       L RP L+GT + S GHSQGSVSSG+R+KRVFA+R N+
Sbjct: 200  RIGFLIQGVVFKEEVVIGSNEIQLGRPCLLGTSSMSVGHSQGSVSSGSRTKRVFAVRANE 259

Query: 239  VSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTK 298
            V   +  F +LK   I  RA FL+SQCR IL+S DP+S  QQ + SD            +
Sbjct: 260  VMANEYDFLELKLGGIVKRARFLVSQCRQILHSGDPISYFQQCSLSDF-----------R 308

Query: 299  FPGRSSIDGELKVKKIERISQQERKPCDESIYVGQPGSITFEDERVVDLEAEGDPVDPCV 358
               R  ++ +L      R+    R P  +   V     +  +  +      E   ++  +
Sbjct: 309  METRDVLNSKLDCGACGRVCDNSRIPVVDGSEVNNAALVFRQAAKC----CENSHINLNI 364

Query: 359  HND-HLHHKDSVGISNKNATPGVKSKLLNSVD-----RQNATHFGSMDKSKSLGSSCSPP 412
             N+  +   + V     +      S++   +D     +++A H     + K+  + C  P
Sbjct: 365  ENNKEIGDMECVSFGGNSMCQKDISEVHFEIDFDYSHKKDAPHLAD-SQMKTQENYCQLP 423

Query: 413  GKKFYLNRLEFMDLTSLNY-DVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHL 471
            GKKFYLNRL FM+  S ++ +V+SLPELL+P+E+I R+FIATFTSDILWF+SYCEIPSHL
Sbjct: 424  GKKFYLNRLHFMEHGSFSHQNVVSLPELLHPIENIMRIFIATFTSDILWFLSYCEIPSHL 483

Query: 472  PVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKL 531
            PVTIACHNTERCWS++ DKR S+PY NFPNL +VFPPFPE++AFG + ++QGIACHHPKL
Sbjct: 484  PVTIACHNTERCWSSNPDKRISMPYSNFPNLSVVFPPFPEAIAFGNDRRRQGIACHHPKL 543

Query: 532  FVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSR 591
             VLQRE+SIRVI+TSANL   QW+ VTNT+WWQDFPRR  PD  SLF +    EI+QDSR
Sbjct: 544  LVLQRENSIRVIITSANLVPNQWHNVTNTIWWQDFPRRSTPDLSSLFTRVSDGEISQDSR 603

Query: 592  SDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTY 651
            SDF AQLA F+ASLVIDVPSQAHW+VELTKY+F  A G+LVAS+PGIHS   P   +   
Sbjct: 604  SDFAAQLAGFIASLVIDVPSQAHWVVELTKYNFDGALGYLVASIPGIHSRGTPYACQY-- 661

Query: 652  SKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGK-SFSAHGML 710
                   A+ S D KFLGSVE SVVGLSHLF T+ D+NG  +KKLAAFLG+   +A+GM 
Sbjct: 662  -------AMKSIDVKFLGSVEASVVGLSHLFHTSTDTNGALLKKLAAFLGRFPENAYGMS 714

Query: 711  KILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGF 770
            +I+LRRNTNVPAD NAVS+L+PNPD+ S GDC+QLGF+PR +AKWVSPLWD GF +FSG+
Sbjct: 715  EIILRRNTNVPADVNAVSILIPNPDKFS-GDCVQLGFLPRYVAKWVSPLWDSGFFKFSGY 773

Query: 771  ISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWR 830
            I   E L AA  G   +         GP F DI KMM  +HV+A+ SL+ASIQRC GLWR
Sbjct: 774  IHPKEALEAASGGNDMR---------GPCFPDIMKMMLPQHVIAVCSLVASIQRCTGLWR 824

Query: 831  LQEVLGQYRWPELQESDFSY-GSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPEWGC 889
            LQEVL QY+WPE+++SDF Y  SS   SINAQFL+AF+AA+GK+SL+ +DSEESDPEWGC
Sbjct: 825  LQEVLDQYKWPEVEQSDFIYGSSSIGSSINAQFLSAFSAAAGKRSLQLFDSEESDPEWGC 884

Query: 890  WSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPH 949
            W+ SQELR+PSIRIIFPTIERV+NAC+GIL S+R+LCFSE TWQRLR+ +ILHDA+PHP+
Sbjct: 885  WTKSQELRNPSIRIIFPTIERVKNACNGILSSRRILCFSENTWQRLRSAEILHDAVPHPY 944

Query: 950  DRVGHPMHVK------------------VAWRRFQSRTD-TSLGWVYCGSHNFSAAAWGR 990
            DRVGHPMHVK                  VA R FQS+TD +S GWVYCGSHNFSAAAWGR
Sbjct: 945  DRVGHPMHVKWPLNILYTRETDRENCKQVARRCFQSKTDVSSSGWVYCGSHNFSAAAWGR 1004

Query: 991  PIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPF 1050
            PI  P  +K N   KT  SS  RLH+CNYELGI+FVFPP+  +     + + LDD+VLPF
Sbjct: 1005 PICHPFGLKSNEPGKTNLSSGLRLHVCNYELGIIFVFPPSRTKGIDNKDAATLDDVVLPF 1064

Query: 1051 VVPAPKYRPKDRPATAQAMREALTELYEQQRSIIVEPA---EEMMEIPDEEEELEATDYV 1107
            VVPAPKY P D PAT +AMREAL EL +Q+R  +VE A   E   EIPDEEE +EAT YV
Sbjct: 1065 VVPAPKYGPTDWPATKKAMREALIELNDQEREKLVELANFEETTEEIPDEEEVVEATHYV 1124

Query: 1108 GEEKEEEKAYADKLWSEVDSSQS 1130
             EEKEEEKAYA+ LWS+V SSQS
Sbjct: 1125 VEEKEEEKAYAEMLWSQVASSQS 1147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224119906|ref|XP_002318192.1| predicted protein [Populus trichocarpa] gi|222858865|gb|EEE96412.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493967|ref|XP_002283806.2| PREDICTED: uncharacterized protein LOC100243589 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142785|emb|CBI20080.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297806769|ref|XP_002871268.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297317105|gb|EFH47527.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357520291|ref|XP_003630434.1| Tyrosyl-DNA phosphodiesterase [Medicago truncatula] gi|355524456|gb|AET04910.1| Tyrosyl-DNA phosphodiesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|42567721|ref|NP_196357.2| forkhead-associated domainand FHA domain-containing protein [Arabidopsis thaliana] gi|30102672|gb|AAP21254.1| At5g07400 [Arabidopsis thaliana] gi|110743660|dbj|BAE99667.1| hypothetical protein [Arabidopsis thaliana] gi|332003770|gb|AED91153.1| forkhead-associated domainand FHA domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7576178|emb|CAB87929.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147770909|emb|CAN67540.1| hypothetical protein VITISV_012382 [Vitis vinifera] Back     alignment and taxonomy information
>gi|115458196|ref|NP_001052698.1| Os04g0403400 [Oryza sativa Japonica Group] gi|113564269|dbj|BAF14612.1| Os04g0403400 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1131
TAIR|locus:21833191084 AT5G07400 [Arabidopsis thalian 0.776 0.809 0.504 9.5e-224
RGD|1309618609 Tdp1 "tyrosyl-DNA phosphodiest 0.087 0.162 0.243 2.5e-08
MGI|MGI:1920036609 Tdp1 "tyrosyl-DNA phosphodiest 0.127 0.236 0.270 2.6e-08
TAIR|locus:2150931605 TDP1 "tyrosyl-DNA phosphodiest 0.098 0.183 0.303 2.9e-08
UNIPROTKB|F1NSQ5602 TDP1 "Uncharacterized protein" 0.101 0.191 0.242 3.9e-08
UNIPROTKB|Q9NUW8608 TDP1 "Tyrosyl-DNA phosphodiest 0.086 0.161 0.267 8.2e-08
FB|FBgn0260817580 gkt "glaikit" [Drosophila mela 0.135 0.263 0.294 1e-07
ZFIN|ZDB-GENE-090909-1615 tdp1 "tyrosyl-DNA phosphodiest 0.200 0.369 0.221 1.3e-07
UNIPROTKB|G4N013555 MGG_06176 "Uncharacterized pro 0.106 0.218 0.301 1.3e-07
UNIPROTKB|F1MST1612 TDP1 "Uncharacterized protein" 0.087 0.161 0.261 7.1e-07
TAIR|locus:2183319 AT5G07400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2160 (765.4 bits), Expect = 9.5e-224, P = 9.5e-224
 Identities = 464/920 (50%), Positives = 593/920 (64%)

Query:   227 RSKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDM 286
             RSKRVFA  EN++++P S F   K   +  R + L+S CR+IL S+DP+SC++    S  
Sbjct:   189 RSKRVFAPMENEINSPVSGFYPPKAVGVVERVNSLVSYCRHILKSDDPLSCLRLSIISHS 248

Query:   287 GIMSTYGCFSTKFPGRSSIDGELK-VKKIERISQQERKPCDESIYVGQPGSITFEDER-- 343
             G      C S  F  +  I  + + VK  E             + + +P S    D R  
Sbjct:   249 GKECLSCCTSKMFRSKVGIVADDRGVKSAEINHDMGHGLSGLRLSIERPNSNLHVDRRLG 308

Query:   344 VVDLEAEGDPVDPCVHNDHLHHKDSVGISNKNATPGVKSKLLNSVDRQNATHFGSMDKSK 403
             V DL +E       + N+         IS+K  T      L    ++ N      ++K K
Sbjct:   309 VSDLISE-------IENEFAA---CTFISDKTRT-----MLPFDGEKVNTPDITCINKEK 353

Query:   404 SLGSSCSPPGKKFYLNRLEFMDLTSLNYD-VISLPELLYPVESISRMFIATFTSDILWFM 462
             S  SS   PGK FYLNRL++++ +S     V+SLPELL+PVESI ++F+ATFTSDILWF+
Sbjct:   354 SYQSSLQAPGKNFYLNRLQYIEQSSTGCQRVVSLPELLHPVESIQQIFLATFTSDILWFL 413

Query:   463 SYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYXXXXXXXXXXXXXXESVAFGENCKKQ 522
             + C+ P HLPVTIACHN ERCWS++ D RT+VP               E +AFG++   +
Sbjct:   414 TCCDTPRHLPVTIACHNAERCWSSNPDARTAVPLPNYPNVTMVYPPFPEEIAFGKDRTNR 473

Query:   523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
             GIACHHPKLF+LQR+DSIRVI+TSANL A+QWN VTNTVWWQDFPRR  PD LSLF    
Sbjct:   474 GIACHHPKLFILQRKDSIRVIITSANLVARQWNDVTNTVWWQDFPRRADPDLLSLFGHCQ 533

Query:   583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYR 642
               E N   + DF AQLA F ASL+ DVPSQAHWI+E TKY+F  +AGHLVASVPGIHSY+
Sbjct:   534 -RETNHGLKPDFCAQLAGFAASLLTDVPSQAHWILEFTKYNFEHSAGHLVASVPGIHSYK 592

Query:   643 NPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGK 702
                L+ES  S       I+S +  FLGSVE SVVGLS+LFR+A DS G Q+K+LA+++ +
Sbjct:   593 PSYLTESGCSN-----TIFSEE--FLGSVEASVVGLSYLFRSANDSTGAQLKRLASYIRR 645

Query:   703 SF-SAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWD 761
             +  ++ GML+++LRRNTNVPAD NAV VLVPNPD+ S  D +QLGF+PR IAKWVSPLWD
Sbjct:   646 TRENSLGMLELVLRRNTNVPADPNAVRVLVPNPDDDSRDDFVQLGFLPRSIAKWVSPLWD 705

Query:   762 IGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIAS 821
             IGF +F G++ RDEVL AA    ++KVQL+LHV QG   SD+SK++Q  HVVAL SLIAS
Sbjct:   706 IGFFKFVGYVYRDEVLGAASCRSNEKVQLVLHVLQGVSISDMSKLIQPYHVVALCSLIAS 765

Query:   822 IQRCRGLWRLQEVLGQYRWPELQESDFXXXXXXXX-XXNXXXXXXXXXXSGKKSLRFYDS 880
             +QRC G+WRLQEVLG+Y+WPE QESDF                      +GKK+L+ +DS
Sbjct:   766 LQRCTGIWRLQEVLGRYKWPESQESDFVYSASSIGGSATTGFQADFSSAAGKKALQHFDS 825

Query:   881 EESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDI 940
             +ESDPEWGCWS  +E  +PSI+IIFPTIERV+N   G+L S+R+LCFSEKTWQ+ R+ ++
Sbjct:   826 QESDPEWGCWSNREEREAPSIKIIFPTIERVKNGHHGVLSSRRLLCFSEKTWQKWRHSNV 885

Query:   941 LHDAIPHPHDRVGHPMHVKVAWRRFQSRT---DTSLGWVYCGSHNFSAAAWGRPIQTPST 997
             LHDA+P+P DRVGHPMH+KVA R F S      +S GWVY GSHNFSAAAWG   QT S 
Sbjct:   886 LHDAVPNPQDRVGHPMHIKVARRLFTSTRGSRSSSFGWVYSGSHNFSAAAWG---QTISR 942

Query:   998 IKPNGSEKTKSS--SSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAP 1055
                N  +++ ++  + ++L +CNYELGIVFVFPP  +++ +    S +DDIVLPFVVPAP
Sbjct:   943 SSRNNQDQSNNAIRAVKKLRVCNYELGIVFVFPPPHEETDSCEG-SKIDDIVLPFVVPAP 1001

Query:  1056 KYRPKDRPATAQAMREALTELYEQQRSIIVXXXXXXXXXXXXXXXXXXT---DYVGXXXX 1112
             KY   D+PAT  AMREA  E  E   S                         ++V     
Sbjct:  1002 KYGWSDKPATGLAMREAFAEFREGSTSFCGESEVEEEVEEEEEEEADAEGRGEFVAEEEK 1061

Query:  1113 XXX-AYADKLWSEVDSSQSS 1131
                 AYA+ LWS+V+SS SS
Sbjct:  1062 QEEEAYAEALWSQVESSSSS 1081
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
RGD|1309618 Tdp1 "tyrosyl-DNA phosphodiesterase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1920036 Tdp1 "tyrosyl-DNA phosphodiesterase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2150931 TDP1 "tyrosyl-DNA phosphodiesterase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSQ5 TDP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NUW8 TDP1 "Tyrosyl-DNA phosphodiesterase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0260817 gkt "glaikit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090909-1 tdp1 "tyrosyl-DNA phosphodiesterase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G4N013 MGG_06176 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|F1MST1 TDP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XII001080
hypothetical protein (1131 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1131
cd09123182 cd09123, PLDc_Tdp1_2, Catalytic domain, repeat 2, 2e-37
cd09122145 cd09122, PLDc_Tdp1_1, Catalytic domain, repeat 1, 4e-32
pfam06087433 pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodie 6e-18
pfam06087433 pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodie 3e-14
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 3e-14
pfam0879795 pfam08797, HIRAN, HIRAN domain 3e-11
pfam0049867 pfam00498, FHA, FHA domain 2e-08
cd09194166 cd09194, PLDc_yTdp1_1, Catalytic domain, repeat 1, 3e-08
smart0091090 smart00910, HIRAN, The HIRAN protein (HIP116, Rad5 1e-07
cd09195191 cd09195, PLDc_mTdp1_2, Catalytic domain, repeat 2, 3e-06
cd09196200 cd09196, PLDc_yTdp1_2, Catalytic domain, repeat 2, 5e-06
smart0024052 smart00240, FHA, Forkhead associated domain 1e-05
cd09193169 cd09193, PLDc_mTdp1_1, Catalytic domain, repeat 1, 1e-05
>gnl|CDD|197222 cd09123, PLDc_Tdp1_2, Catalytic domain, repeat 2, of tyrosyl-DNA phosphodiesterase Back     alignment and domain information 
 Score =  138 bits (349), Expect = 2e-37
 Identities = 61/207 (29%), Positives = 85/207 (41%), Gaps = 35/207 (16%)

Query: 828  LWRLQEVLGQYRWPEL---QESDFSYGSSSIGSI-NAQFLAAFAAASGKKSLRFYDSEES 883
            L RL+++L           +     Y  SSIGS+    +L  FA++ G  S R       
Sbjct: 1    LGRLRKLLQNLTLDNKEKEKSKPLVYQFSSIGSLDEKWWLNEFASSLGGVSSR------- 53

Query: 884  DPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQR---LRNVDI 940
                     S  L  P ++IIFPT+E VR + +G       + F+ K ++    L+   +
Sbjct: 54   SELPLVKKNSPSLGKPKLKIIFPTVEEVRTSLEGY-NGGGSIPFTIKNYESKEFLKK--L 110

Query: 941  LHDAIPHPHD--RVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTI 998
             H   P  +   R     H+K   R         LGWVY GSHN S AAWG         
Sbjct: 111  FHRWKPRNNARRRQRAMPHIKTYIRYTDDGKIDKLGWVYLGSHNLSKAAWGAL------- 163

Query: 999  KPNGSEKTKSSSSQRLHICNYELGIVF 1025
                 +K  S     L I NYELG++F
Sbjct: 164  -----QKNGSQ----LRIRNYELGVLF 181

Catalytic domain, repeat 2, of Tyrosyl-DNA phosphodiesterase (Tdp1, EC 3.1.4.-), which exists in eukaryotes but not in prokaryotes. Tdp1 acts as an important DNA repair enzyme that removes stalled topoisomerase I-DNA complexes by catalyzing the hydrolysis of a phosphodiester bond between a tyrosine side chain and a DNA 3'-phosphate. It is a monomeric protein that contains two copies of a variant HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which consists of the highly conserved histidine and lysine residues, but lacks the aspartate residue that is well conserved in other phospholipase D (PLD, EC 3.1.4.4) enzymes. Thus, this family represents a distinct class within the PLD superfamily. Like other PLD enzymes, Tdp1 may utilize a common two-step general acid/base catalytic mechanism, involving a DNA-enzyme intermediate to cleave phosphodiester bonds. A single active site involved in phosphatidyl group transfer would be formed by the two variant HKD motifs from the N- and C-terminal domains in a pseudodimeric way. Length = 182
>gnl|CDD|197221 cd09122, PLDc_Tdp1_1, Catalytic domain, repeat 1, of Tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|218888 pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|218888 pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>gnl|CDD|220020 pfam08797, HIRAN, HIRAN domain Back     alignment and domain information
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|197290 cd09194, PLDc_yTdp1_1, Catalytic domain, repeat 1, of yeast tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|214906 smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p Back     alignment and domain information
>gnl|CDD|197291 cd09195, PLDc_mTdp1_2, Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|197292 cd09196, PLDc_yTdp1_2, Catalytic domain, repeat 2, of yeast tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|197289 cd09193, PLDc_mTdp1_1, Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1131
PF06087443 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; In 100.0
KOG2031519 consensus Tyrosyl-DNA phosphodiesterase [Replicati 100.0
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.36
cd00060102 FHA Forkhead associated domain (FHA); found in euk 98.97
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 98.58
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 98.49
PF08797107 HIRAN: HIRAN domain; InterPro: IPR014905 The HIRAN 98.35
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 98.13
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 98.1
COG3456430 Predicted component of the type VI protein secreti 98.02
KOG1882293 consensus Transcriptional regulator SNIP1, contain 97.68
KOG0615475 consensus Serine/threonine protein kinase Chk2 and 97.15
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 94.73
PF13091126 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 93.3
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 91.73
KOG1881793 consensus Anion exchanger adaptor protein Kanadapt 89.89
smart0015528 PLDc Phospholipase D. Active site motifs. Phosphat 87.55
TIGR02500410 type_III_yscD type III secretion apparatus protein 80.36
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death Back     alignment and domain information 
Probab=100.00  E-value=2.8e-85  Score=748.88  Aligned_cols=417  Identities=33%  Similarity=0.535  Sum_probs=268.6

Q ss_pred             CceEEEEecccCCC-CCCCCccccccccCCchhHHHHHHhhcccCHHHHhhhcCCCC--CccEEEEecCCccccccCcCC
Q 001181          414 KKFYLNRLEFMDLT-SLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPS--HLPVTIACHNTERCWSTSADK  490 (1131)
Q Consensus       414 spFyLnrI~~l~~~-~nn~~tISL~DLL~p~g~L~~allfnFm~DidWLLs~f~~~r--~vpVtIv~h~~e~~ws~~~~~  490 (1131)
                      .+||+|+|.++++. ..+.++|||+|||++ ++|++||+||||+|++|||++|+...  ++||+++.+..+...    ..
T Consensus         2 ~~~~~~~i~~~~~~~~~~~~~itl~dil~~-~~l~~~~~~nf~~D~~wll~~~~~~~~~~~~i~~v~g~~~~~~----~~   76 (443)
T PF06087_consen    2 FKLYLTTIYDLPPRSNNNPDTITLEDILGD-PDLEEALLFNFMIDLDWLLSQFPPSTRKNIPITIVHGTKDPPD----KR   76 (443)
T ss_dssp             CEEEEBTTTTS-GG--GTTTEE-HHHHCSG-TTEEEEEEE-SSEEHHHHHCCS-CCGTTCEEEEEECTSEEHHH----HH
T ss_pred             cceEEeeecCCCccccCCCCcEeHHHHcCC-ccHHHHHhhhheeeHHHHHHhCCHhhcccceEEEEeCCCcchh----hh
Confidence            47899999999987 346899999999998 58999999999999999999999532  358888744222210    11


Q ss_pred             cCCCCCCCCCCeEEEcCCCCccccccccccCCCccccccceEEeeeCCc-eEEEEeCCCCChhhhcccccEEEEecC-CC
Q 001181          491 RTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDS-IRVIVTSANLGAKQWNAVTNTVWWQDF-PR  568 (1131)
Q Consensus       491 rl~~~~~~~pNV~li~PpMPe~IpFG~dr~~~g~GcHHSKMMLL~Y~D~-LRVVI~TANLi~~DW~~~TQ~VWiqDF-Pr  568 (1131)
                      .+......++|+++|.||||.  |||         |||||||||+|+|+ ||||||||||+++||+++||+||+||| |+
T Consensus        77 ~~~~~~~~~~nv~~~~~~mp~--~~g---------~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~~~~q~vw~~d~lP~  145 (443)
T PF06087_consen   77 EIRQQAAIYPNVKLIFPPMPI--PFG---------THHSKMMLLFYEDGSLRVVIPTANLTPYDWNNKTQGVWIQDFLPR  145 (443)
T ss_dssp             HHHHHHCCHTTEEEEEE---S--TT-----------B--EEEEEEETTCEEEEEEESS-BSHHHHCSSB-EEEE---E-B
T ss_pred             hhhhhcccCCCeEEEccCCCc--ccc---------cccceeEEEEeCCccEEEEEECCCCCHHHHCCcceeEEEecccCc
Confidence            111123478999999999994  677         99999999999998 999999999999999999999999998 99


Q ss_pred             CCCCCccccccCCCcccccCCCCCcHHHHHHHHHHHhcCCCCchhHHHHhhccccccccceEEEEecCCcccCCCCCCcc
Q 001181          569 RCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSE  648 (1131)
Q Consensus       569 l~~~d~s~~~~~~s~gE~~~~s~sdFk~dL~~YL~Sy~~~~Psl~~wI~~L~kyDFS~akV~LVaSVPG~H~g~~~~~~e  648 (1131)
                      ++.....           ....+++|+++|.+||.+|+.  +....|++.|++||||.++|+||+||||+|... .   .
T Consensus       146 ~~~~~~~-----------~~~~~~~F~~dL~~yL~~y~~--~~~~~~~~~l~~yDFS~~~v~lV~SvPG~h~~~-~---~  208 (443)
T PF06087_consen  146 LPSSKSS-----------SEESGSRFKKDLVAYLNSYGK--SPLDKLIERLRKYDFSSARVHLVASVPGKHKED-K---D  208 (443)
T ss_dssp             -ECTS-S-------------SSTTHHHHHHHHHHHTT----HHHHHCHHHHHTEE-CCGTSEEEEE-SECCCGG-G---G
T ss_pred             ccccccc-----------cCCCCCchHHHHHHHHHHhCC--cchhHHHHHHHhcCCccCceEEEeccCccccCC-C---c
Confidence            9863211           135789999999999999984  236789999999999999999999999999821 0   0


Q ss_pred             CCCCCCCCCCcccccCCccccceeeeeeccccccccccCCchhHHHHHHHHhccccccchhhhhhhhcCCCCCCCccccc
Q 001181          649 STYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVS  728 (1131)
Q Consensus       649 s~~~~~~~~~~~~~~~~~~~g~~~~s~~G~sH~f~~~~D~ng~~Lk~la~~l~~~~~~~g~~~~~l~rn~~ip~d~nav~  728 (1131)
                       +|                         |  |.          +|++                 +|+++...+       
T Consensus       209 -~~-------------------------G--~~----------~L~~-----------------~L~~~~~~~-------  226 (443)
T PF06087_consen  209 -KW-------------------------G--HM----------RLRK-----------------VLKRLGLPS-------  226 (443)
T ss_dssp             -GS-------------------------H--HH----------HHHH-----------------HHHHCCTT--------
T ss_pred             -ch-------------------------h--HH----------HHHH-----------------HHHhccccc-------
Confidence             22                         4  43          4443                 233321000       


Q ss_pred             cccCCCCCCCCCcccccCCCccccccccCCcccccccccccccchHHHHHHHhhccchheeeeecccCCCCcchhhhhHH
Q 001181          729 VLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQ  808 (1131)
Q Consensus       729 ~~v~~~d~~s~~~~~~~gf~~~~~a~~~s~l~d~g~~~~~g~~~p~~~l~~a~g~~~~k~ql~l~v~~g~~~~~~~~~~~  808 (1131)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (443)
T PF06087_consen  227 --------------------------------------------------------------------------------  226 (443)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhHHHHHhhcCchhhhhhhcccCCCCCcccceEEeecccccc---cHHHHHH-HHHhcCCCccccccCCCCC
Q 001181          809 IEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSI---NAQFLAA-FAAASGKKSLRFYDSEESD  884 (1131)
Q Consensus       809 ~~~~~~~csl~~s~~r~~GL~rlq~vl~~~~wp~~~e~DiVyQ~SSIGSL---~~~wL~~-F~aa~G~~~~~~~~s~~s~  884 (1131)
                                                    .-..+.+.+|+||+||||++   ...||.. |+.++......   + ...
T Consensus       227 ------------------------------~~~~~~~~~~~~Q~SSIGs~~~~~~~Wl~~~f~~sl~~~~~~---~-~~~  272 (443)
T PF06087_consen  227 ------------------------------NKDKDKESDIVCQFSSIGSLGSSPKDWLTSEFLTSLYPASFS---S-PST  272 (443)
T ss_dssp             --------------------------------TTCCCCEEEEE-SBB---SSSTTTTTTTHHHHHCCHHCCT--------
T ss_pred             ------------------------------cCCcCCCCeEEEEcccccccCcchhhhHHHHHHHHHhhcccc---c-ccc
Confidence                                          00123567899999999999   3447653 65221110000   0 112


Q ss_pred             CcccccccccccCCCCeEEEcCCHHHHhhcCCCCCCCceeeeeccccccccCc----cccccccccC--CCCCCCCCcce
Q 001181          885 PEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRN----VDILHDAIPH--PHDRVGHPMHV  958 (1131)
Q Consensus       885 pe~~~~t~~~e~~~p~~rIIFPT~e~Vr~S~~G~~gGgsi~Cf~~k~W~~~~p----r~ifhD~~~~--~s~R~galPHi  958 (1131)
                      +......+..+...++++|||||+++|++|..|+.+||+ +|++.+||+..++    +.+||+|.+.  .++|.+++||+
T Consensus       273 ~~~~~~~~~~~~~~~~~~IvfPT~e~Vr~S~~G~~~ggs-i~~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~R~~~~pH~  351 (443)
T PF06087_consen  273 PSSKSSSSQQENNRPPLKIVFPTVEEVRNSPEGYNGGGS-IPFKYKWWEPNFPQEWLRPYFHKWYASDDPSGRSRAPPHI  351 (443)
T ss_dssp             --HHHHHHHCCHHTEEEEEE--BCHHHCTSTTGGGGGGG-SB--HC--GHHCCHHHHHHCCE-EEEC-TGCTTTTS-B--
T ss_pred             ccccccccccccCCCCceEECCCHHHHhhCccCCcCcee-EEecchhccccchHHHHHHHHhhhccccccCCCCCcCcce
Confidence            222222333445578999999999999999999998876 4667788874444    4778899877  78999999999


Q ss_pred             EEEEeeecCCCCCceeEEEEcccccchhhcCCCccCCCCCCCCCCCccCCCCCCceeEeeeeeeEEEeCCCC--CCCCCC
Q 001181          959 KVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPPT--EKQSST 1036 (1131)
Q Consensus       959 Kty~Rrf~s~~~~~igWvYVGSANLSkAAWG~l~knr~~~Ks~~~~~~~ss~~~qL~IrNYELGVLfp~P~~--~~~~~~ 1036 (1131)
                      |+|+|+. .+....++|+|+||||||+||||+..++                +++++|||||||||| +|+.  .+.+++
T Consensus       352 K~y~~~~-~~~~~~~~W~~lgShNLS~aAWG~~~~~----------------~~~l~i~nyElGVl~-~P~~~~~~~~~~  413 (443)
T PF06087_consen  352 KTYMRFS-KNDFKSLGWFYLGSHNLSKAAWGKRSKN----------------GSQLSIRNYELGVLF-LPSSFGVMLPVF  413 (443)
T ss_dssp             EEEEEEE--TTTSEECEEEEES--BSHHHH-EEETT----------------TTCCEESSBEEEEEE-EGGGCTSSSSCE
T ss_pred             EEEEEec-CCCCCccceEEeCcccCCHHHhcccccC----------------CceeeecceEEEEEE-ecCccccccccc
Confidence            9999974 3445699999999999999999996543                689999999999999 4432  233433


Q ss_pred             CC--------CCCCCCceeeecccCCCCCC
Q 001181         1037 GN--------NTSNLDDIVLPFVVPAPKYR 1058 (1131)
Q Consensus      1037 ~~--------~~~~~~~~pvPfdlP~~~Y~ 1058 (1131)
                      ..        .......++|||++|++||+
T Consensus       414 ~~~~~~~~~~~~~~~~~v~vPf~lP~~~Y~  443 (443)
T PF06087_consen  414 SLDDPVYRSISSTNTVPVPVPFDLPPTPYG  443 (443)
T ss_dssp             EEECCG-------GGGCEEESS-SSEEE--
T ss_pred             ccccccccccccCCCceEEecCCCCCcCcC
Confidence            21        12234579999999999996

Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
>KOG2031 consensus Tyrosyl-DNA phosphodiesterase [Replication, recombination and repair] Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>PF08797 HIRAN: HIRAN domain; InterPro: IPR014905 The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>smart00155 PLDc Phospholipase D Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1131
1qzq_A483 Human Tyrosyl Dna Phosphodiesterase Length = 483 8e-06
1qzq_A483 Human Tyrosyl Dna Phosphodiesterase Length = 483 6e-04
1mu7_A485 Crystal Structure Of A Human Tyrosyl-dna Phosphodie 1e-05
1mu7_A485 Crystal Structure Of A Human Tyrosyl-dna Phosphodie 9e-04
1jy1_A464 Crystal Structure Of Human Tyrosyl-Dna Phosphodiest 3e-04
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase Length = 483 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
               HH K+ +L  E+ +RV++ ++NL    W+  T  +W      R A           
Sbjct: 133 AFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADG--------- 183
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
               + +S + F A L S++  +  + PS   WI  + K+D +    +L+ S PG
Sbjct: 184 -THKSGESPTHFKADLISYL--MAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 235
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase Length = 483 Back     alignment and structure
>pdb|1MU7|A Chain A, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase (tdp1)- Tungstate Complex Length = 485 Back     alignment and structure
>pdb|1MU7|A Chain A, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase (tdp1)- Tungstate Complex Length = 485 Back     alignment and structure
>pdb|1JY1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase (Tdp1) Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1131
1jy1_A464 TDP1, tyrosyl-DNA phosphodiesterase; PLD superfami 6e-35
1jy1_A464 TDP1, tyrosyl-DNA phosphodiesterase; PLD superfami 6e-35
3sq7_A470 Tyrosyl-DNA phosphodiesterase 1; DNA binding, nucl 5e-33
3sq7_A470 Tyrosyl-DNA phosphodiesterase 1; DNA binding, nucl 9e-23
1q32_A544 TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, 7e-32
1q32_A544 TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, 2e-25
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 9e-13
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 6e-12
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 1e-11
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 7e-11
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 5e-10
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 6e-10
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 9e-10
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 9e-10
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 1e-09
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 2e-09
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 1e-08
3po8_A100 RV0020C protein, putative uncharacterized protein 2e-08
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 5e-08
2xt9_B115 Putative signal transduction protein GARA; lyase-s 5e-08
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 6e-08
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 1e-07
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 2e-07
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 2e-07
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 2e-07
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 3e-07
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 2e-06
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 2e-06
2l1i_A122 HLTF protein; hiran domain, transcription factor, 1e-04
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 3e-04
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A Length = 464 Back     alignment and structure
 Score =  139 bits (350), Expect = 6e-35
 Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 31/233 (13%)

Query: 415 KFYLNRLEFMDLTSLNYDVISLPELLYPVE-SISRMFIATFTSDILWFMS-YCEIPSHLP 472
           +FYL R+  +     N   + + ++L P+  ++       +  D+ W +  Y       P
Sbjct: 21  QFYLTRVSGVKPKY-NSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKP 79

Query: 473 VTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLF 532
           + +  H  +R        +       + N+ L         AFG          HH K+ 
Sbjct: 80  ILLV-HGDKREAKAHLHAQ----AKPYENISLCQAKLDI--AFG---------THHTKMM 123

Query: 533 VLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRS 592
           +L  E+ +RV++ ++NL    W+  T  +W      R A               + +S +
Sbjct: 124 LLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADG----------THKSGESPT 173

Query: 593 DFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPN 645
            F A L S++ +   + PS   WI  + K+D +    +L+ S PG       +
Sbjct: 174 HFKANLISYLTAY--NAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKD 224
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A Length = 464 Back     alignment and structure
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A Length = 470 Back     alignment and structure
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A Length = 470 Back     alignment and structure
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3 Length = 544 Back     alignment and structure
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3 Length = 544 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens} Length = 122 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1131
1jy1_A464 TDP1, tyrosyl-DNA phosphodiesterase; PLD superfami 100.0
1q32_A544 TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, 100.0
3sq7_A470 Tyrosyl-DNA phosphodiesterase 1; DNA binding, nucl 100.0
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.5
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.48
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.43
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.42
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.39
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.38
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.34
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.34
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.33
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.31
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.3
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.3
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.3
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.25
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.25
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.22
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.21
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.18
3po8_A100 RV0020C protein, putative uncharacterized protein 99.15
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.14
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.13
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.09
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.05
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.05
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.03
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.01
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.99
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 98.96
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.95
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 98.94
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 98.93
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 98.85
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 98.8
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 98.68
3huf_A325 DNA repair and telomere maintenance protein NBS1; 98.53
4a0e_A123 YSCD, type III secretion protein; transport protei 98.34
2l1i_A122 HLTF protein; hiran domain, transcription factor, 97.97
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 97.95
1wv3_A238 Similar to DNA segregation ATPase and related prot 96.52
3k2y_A109 Uncharacterized protein LP_0118; nucleic acid bind 94.14
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A Back     alignment and structure
Probab=100.00  E-value=3.3e-95  Score=833.09  Aligned_cols=433  Identities=22%  Similarity=0.378  Sum_probs=336.7

Q ss_pred             CCcccCccCCCCCCCCCceEEEEecccCCCCCCCCccccccccCC-chhHHHHHHhhcccCHHHHhhhcC-CCCCccEEE
Q 001181          398 SMDKSKSLGSSCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYP-VESISRMFIATFTSDILWFMSYCE-IPSHLPVTI  475 (1131)
Q Consensus       398 ~~~~~kt~~~~~~~~gspFyLnrI~~l~~~~nn~~tISL~DLL~p-~g~L~~allfnFm~DidWLLs~f~-~~r~vpVtI  475 (1131)
                      .+..++||...|...+.+||||+|++++... |.++|+|+|||++ .|+|++||+||||+|++|||++|+ ..+++||+|
T Consensus         4 ~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~-n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~v~i   82 (464)
T 1jy1_A            4 PGEGQDIWDMLDKGNPFQFYLTRVSGVKPKY-NSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILL   82 (464)
T ss_dssp             TTTTCCGGGTSCTTCSSCEEEBCCTTSCGGG-GTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSCEEE
T ss_pred             cccccchhhhhcccCCceEEEEeecCCCccc-CCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCcEEE
Confidence            4667899999999999999999999999554 5789999999995 368999999999999999999998 357889999


Q ss_pred             EecCCccccccCcCCcCCCCCCCCCCeEEEcCCCCccccccccccCCCccccccceEEeeeCCceEEEEeCCCCChhhhc
Q 001181          476 ACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWN  555 (1131)
Q Consensus       476 v~h~~e~~ws~~~~~rl~~~~~~~pNV~li~PpMPe~IpFG~dr~~~g~GcHHSKMMLL~Y~D~LRVVI~TANLi~~DW~  555 (1131)
                      |.+.....     ..++..++..+|||++|+||||  ++||         |||||||||+|+|+||||||||||+++||+
T Consensus        83 v~g~~~~~-----~~~l~~~~~~~~nv~~~~p~mp--~~fG---------thHsKmmiL~y~~glRVVI~TANL~~~DW~  146 (464)
T 1jy1_A           83 VHGDKREA-----KAHLHAQAKPYENISLCQAKLD--IAFG---------THHTKMMLLLYEEGLRVVIHTSNLIHADWH  146 (464)
T ss_dssp             EECCCHHH-----HHHHHHHHTTCTTEEEEECCCC--STTC---------CBCCCEEEEEESSCEEEEEECCCBSGGGGT
T ss_pred             EeCCCccc-----chhhHHhhccCCCeEEEeCCCC--Cccc---------ccchhhheeecCCceEEEEeCCCCChhHhc
Confidence            86643221     1223334567999999999999  4677         999999999999999999999999999999


Q ss_pred             ccccEEEEec-CCCCCCCCccccccCCCcccccCCCCCcHHHHHHHHHHHhcCCCCchhHHHHhhccccccccceEEEEe
Q 001181          556 AVTNTVWWQD-FPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVAS  634 (1131)
Q Consensus       556 ~~TQ~VWiqD-FPrl~~~d~s~~~~~~s~gE~~~~s~sdFk~dL~~YL~Sy~~~~Psl~~wI~~L~kyDFS~akV~LVaS  634 (1131)
                      ++||+||+|| ||+++....           ...+++++|+++|++||++|+.  |.++.|++.|++||||.++|+||+|
T Consensus       147 ~~tQ~vW~sd~lP~~~~~~~-----------~~~~~~~~Fk~dL~~yL~ay~~--~~~~~~i~~L~~~DFS~~~v~LVaS  213 (464)
T 1jy1_A          147 QKTQGIWLSPLYPRIADGTH-----------KSGESPTHFKANLISYLTAYNA--PSLKEWIDVIHKHDLSETNVYLIGS  213 (464)
T ss_dssp             SSBCEEEECCCBCBCCTTCC-----------CCCCCTTCHHHHHHHHHHTTCC--GGGHHHHHHHHTBCCTTCCSEEEEE
T ss_pred             cccceEEecccCcCCCcccc-----------ccCCCCCchHHHHHHHHHHhCC--chhHHHHHHHHhcCCcccCcEEEEe
Confidence            9999999999 798875321           1135778999999999999974  5678999999999999999999999


Q ss_pred             cCCcccCCCCCCccCCCCCCCCCCcccccCCccccceeeeeeccccccccccCCchhHHHHHHHHhccccccchhhhhhh
Q 001181          635 VPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILL  714 (1131)
Q Consensus       635 VPG~H~g~~~~~~es~~~~~~~~~~~~~~~~~~~g~~~~s~~G~sH~f~~~~D~ng~~Lk~la~~l~~~~~~~g~~~~~l  714 (1131)
                      |||+|.+.+..    .|                         |  |.          +|++   +              |
T Consensus       214 vPG~h~~~~~~----~~-------------------------G--~~----------~L~~---~--------------L  235 (464)
T 1jy1_A          214 TPGRFQGSQKD----NW-------------------------G--HF----------RLKK---L--------------L  235 (464)
T ss_dssp             CSEEEEGGGGG----GS-------------------------H--HH----------HHHH---H--------------H
T ss_pred             CCcCCcCCcch----hh-------------------------h--HH----------HHHH---H--------------H
Confidence            99999975321    23                         4  43          4433   2              3


Q ss_pred             hcCCCCCCCccccccccCCCCCCCCCcccccCCCccccccccCCcccccccccccccchHHHHHHHhhccchheeeeecc
Q 001181          715 RRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHV  794 (1131)
Q Consensus       715 ~rn~~ip~d~nav~~~v~~~d~~s~~~~~~~gf~~~~~a~~~s~l~d~g~~~~~g~~~p~~~l~~a~g~~~~k~ql~l~v  794 (1131)
                      +++...                                                                          
T Consensus       236 ~~~~~~--------------------------------------------------------------------------  241 (464)
T 1jy1_A          236 KDHASS--------------------------------------------------------------------------  241 (464)
T ss_dssp             HHHC----------------------------------------------------------------------------
T ss_pred             HHhccC--------------------------------------------------------------------------
Confidence            332100                                                                          


Q ss_pred             cCCCCcchhhhhHHHHHHHhhhhhHHHHHhhcCchhhhhhhcccCCCCCcccceEEeeccccccc---HHHHHH-HHHhc
Q 001181          795 SQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSIN---AQFLAA-FAAAS  870 (1131)
Q Consensus       795 ~~g~~~~~~~~~~~~~~~~~~csl~~s~~r~~GL~rlq~vl~~~~wp~~~e~DiVyQ~SSIGSL~---~~wL~~-F~aa~  870 (1131)
                                                                   .|.....+|+||+||||||+   .+||++ |+.++
T Consensus       242 ---------------------------------------------~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl  276 (464)
T 1jy1_A          242 ---------------------------------------------MPNAESWPVVGQFSSVGSLGADESKWLCSEFKESM  276 (464)
T ss_dssp             ------------------------------------------------CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHH
T ss_pred             ---------------------------------------------CCccCCCcEEEEeecccccCcchhHHHHHHHHHHh
Confidence                                                         01113456999999999996   589964 87443


Q ss_pred             CCCccccccCCCCCCcccccccccccCCCCeEEEcCCHHHHhhcCCCCCCCceeeeeccccccccC-ccccccccccCCC
Q 001181          871 GKKSLRFYDSEESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLR-NVDILHDAIPHPH  949 (1131)
Q Consensus       871 G~~~~~~~~s~~s~pe~~~~t~~~e~~~p~~rIIFPT~e~Vr~S~~G~~gGgsi~Cf~~k~W~~~~-pr~ifhD~~~~~s  949 (1131)
                      ...+.      ++        ...+...++++|||||+++||+|.+|+.+||+ +|++.++|++.. ++.+||+|.+..+
T Consensus       277 ~~~~~------~~--------~~~~~~~~~~~iifPT~e~Vr~S~~G~~~ggs-i~~~~~~~~~~~~l~~~l~~w~~~~~  341 (464)
T 1jy1_A          277 LTLGK------ES--------KTPGKSSVPLYLIYPSVENVRTSLEGYPAGGS-LPYSIQTAEKQNWLHSYFHKWSAETS  341 (464)
T ss_dssp             TCCC-----------------------CCCEEEECCBHHHHHTSSSCGGGGGG-SCCCHHHHTTCGGGGGGEECCCCGGG
T ss_pred             hhhcc------cc--------cccccCCCceEEEcCCHHHHHhcccccCCcce-eeccchhhhhhhhhHHHHHHhccCcc
Confidence            32110      00        11223468999999999999999999998875 466777887663 7899999998889


Q ss_pred             CCCCCCcceEEEEeeecCCCCCceeEEEEcccccchhhcCCCccCCCCCCCCCCCccCCCCCCceeEeeeeeeEEEeCCC
Q 001181          950 DRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPP 1029 (1131)
Q Consensus       950 ~R~galPHiKty~Rrf~s~~~~~igWvYVGSANLSkAAWG~l~knr~~~Ks~~~~~~~ss~~~qL~IrNYELGVLfp~P~ 1029 (1131)
                      +|.++|||||||+| +. ++...++|+||||||||+||||+++++                +++|+|||||||||| +|+
T Consensus       342 ~R~~a~pHiKty~r-~~-~~~~~~~W~lltSaNLSkaAWG~~~k~----------------~~~l~I~nyElGVl~-~P~  402 (464)
T 1jy1_A          342 GRSNAMPHIKTYMR-PS-PDFSKIAWFLVTSANLSKAAWGALEKN----------------GTQLMIRSYELGVLF-LPS  402 (464)
T ss_dssp             TCTTSCBCCEEEEE-EC-TTSSEEEEEEEESCCBSHHHHCEEETT----------------TTEEEECSBEEEEEE-CGG
T ss_pred             CCCCcCCceeeEEe-cC-CCCCeecEEEEccccCCHHHhCccccC----------------CCceeEeeeeeeEEE-ecc
Confidence            99999999999998 43 344589999999999999999999864                479999999999999 554


Q ss_pred             CCCCC-------CCCCCCCCCCceeeecccCCCCCCCCCCCcchhHhHH
Q 001181         1030 TEKQS-------STGNNTSNLDDIVLPFVVPAPKYRPKDRPATAQAMRE 1071 (1131)
Q Consensus      1030 ~~~~~-------~~~~~~~~~~~~pvPfdlP~~~Y~~~D~PW~~~a~~e 1071 (1131)
                      .....       ++.........+||||++|+++|+++|+||++++.|+
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~D~Pw~~~~~~~  451 (464)
T 1jy1_A          403 ALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYV  451 (464)
T ss_dssp             GGTCSCEEEC-----------CEECCSSCSSCCBCCTTCCBCCTTSCBC
T ss_pred             cccccccccCccccccccCcccceeecCCCCCcCCCCCCCCeeCCCCCC
Confidence            31110       1111122345799999999999999999999987654
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3 Back     alignment and structure
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A Back     alignment and structure
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1131
d1q32a1215 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase 2e-47
d1jy1a2258 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesteras 2e-43
d1jy1a1206 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesteras 1e-31
d1q32a2237 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesteras 1e-30
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 5e-10
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 8e-09
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 3e-05
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 4e-04
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 0.001
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 0.002
>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 215 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Tyrosyl-DNA phosphodiesterase TDP1
domain: Tyrosyl-DNA phosphodiesterase TDP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  166 bits (422), Expect = 2e-47
 Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 39/237 (16%)

Query: 413 GKKFYLNRLEFMDL---TSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPS 469
           G  F L + +F +         D+I+L ++    E++ R  + +F  ++ + +       
Sbjct: 1   GAVFKLMKSDFYEREDFMGEVEDMITLKDIFGT-ETLKRSILFSFQYELDFLLRQF--HQ 57

Query: 470 HLPVTIACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHP 529
           ++                A    +        + L+    P    F           HH 
Sbjct: 58  NVENITIVGQKGTIMPIEARAMDATLAVILKKVKLIEITMP---PFA---------SHHT 105

Query: 530 KLFVLQRED-SIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQ 588
           KL +   ++   ++ + S N  + + N      W     +         F          
Sbjct: 106 KLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCSPLLKIGKEGLPVPF---------- 155

Query: 589 DSRSDFTAQLASFMASLVIDVPSQAHWIVE-LTKYDFASAAG-HLVASVPGIHSYRN 643
             +      L S+       +      I + + + +FA  +    V S P       
Sbjct: 156 --KRSLIEYLNSY------HLKDIDELITKSVEEVNFAPLSELEFVYSTPSKFQSSG 204
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 258 Back     information, alignment and structure
>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1131
d1jy1a2258 Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sa 100.0
d1q32a1215 Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast 100.0
d1jy1a1206 Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sa 100.0
d1q32a2237 Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast 100.0
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.51
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.48
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.46
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.36
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.32
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.31
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.3
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.18
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 98.97
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 98.86
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 98.59
d1byra_152 Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 80.96
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Tyrosyl-DNA phosphodiesterase TDP1
domain: Tyrosyl-DNA phosphodiesterase TDP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-53  Score=454.68  Aligned_cols=195  Identities=24%  Similarity=0.370  Sum_probs=147.7

Q ss_pred             CCCcccceEEeeccccccc---HHHHHH-HH-HhcCCCccccccCCCCCCcccccccccccCCCCeEEEcCCHHHHhhcC
Q 001181          841 PELQESDFSYGSSSIGSIN---AQFLAA-FA-AASGKKSLRFYDSEESDPEWGCWSASQELRSPSIRIIFPTIERVRNAC  915 (1131)
Q Consensus       841 p~~~e~DiVyQ~SSIGSL~---~~wL~~-F~-aa~G~~~~~~~~s~~s~pe~~~~t~~~e~~~p~~rIIFPT~e~Vr~S~  915 (1131)
                      +++.+.+||||+||||||+   .+||.. |. ++.+....               +.......++|+|||||+|+||+|.
T Consensus        37 ~~~~~~~iv~Q~SSiGSlg~~~~~wl~~~~~~sl~~~~~~---------------~~~~~~~~~~~~iifPT~~~Vr~S~  101 (258)
T d1jy1a2          37 PNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKE---------------SKTPGKSSVPLYLIYPSVENVRTSL  101 (258)
T ss_dssp             --CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC------------------------CCCEEEECCBHHHHHTSS
T ss_pred             CcCcCCCEEEEeCCcccCCcCHHHHHHHHHHHhhhccccc---------------ccCcccCCCCeEEEcCCHHHHhccc
Confidence            4455678999999999996   378864 65 33322100               0111234679999999999999999


Q ss_pred             CCCCCCceeeeeccccccccC-ccccccccccCCCCCCCCCcceEEEEeeecCCCCCceeEEEEcccccchhhcCCCccC
Q 001181          916 DGILPSKRVLCFSEKTWQRLR-NVDILHDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQT  994 (1131)
Q Consensus       916 ~G~~gGgsi~Cf~~k~W~~~~-pr~ifhD~~~~~s~R~galPHiKty~Rrf~s~~~~~igWvYVGSANLSkAAWG~l~kn  994 (1131)
                      +|+.+||+| |++.++|++.. ++.+||+|.+..++|.+++||||||+|.  +++.++++|+||||||||+||||+++++
T Consensus       102 ~G~~~ggsi-~~~~~~~~~~~~l~~~l~~w~~~~~gR~~a~PHiKty~r~--~~d~~~i~W~lltSaNLSkaAWG~~~~~  178 (258)
T d1jy1a2         102 EGYPAGGSL-PYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRP--SPDFSKIAWFLVTSANLSKAAWGALEKN  178 (258)
T ss_dssp             SCGGGGGGS-CCCHHHHTTCGGGGGGEECCCCGGGTCTTSCBCCEEEEEE--CTTSSEEEEEEEESCCBSHHHHCEEETT
T ss_pred             cCcCCccee-ecCchhhhhhhhHHHHHHhcCCCcCCCCCCCCeeEEEEEE--CCCCCeeeEEEEccccCCHHHhCcccCC
Confidence            999988765 78888998874 8999999998888999999999999984  3345699999999999999999999864


Q ss_pred             CCCCCCCCCCccCCCCCCceeEeeeeeeEEEeCCCCCCCCC-------CCCCCCCCCceeeecccCCCCCCCCCCCcchh
Q 001181          995 PSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPPTEKQSS-------TGNNTSNLDDIVLPFVVPAPKYRPKDRPATAQ 1067 (1131)
Q Consensus       995 r~~~Ks~~~~~~~ss~~~qL~IrNYELGVLfp~P~~~~~~~-------~~~~~~~~~~~pvPfdlP~~~Y~~~D~PW~~~ 1067 (1131)
                                      +++|+||||||||||| |...+.+.       ...+......|||||++|+++|+++|+||+++
T Consensus       179 ----------------~~~l~I~nyElGVL~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~D~PW~~~  241 (258)
T d1jy1a2         179 ----------------GTQLMIRSYELGVLFL-PSALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWN  241 (258)
T ss_dssp             ----------------TTEEEECSBEEEEEEC-GGGGTCSCEEEC-----------CEECCSSCSSCCBCCTTCCBCCTT
T ss_pred             ----------------CCeEEeecceeEEEEc-ccccCCCccccccccccCccCcCCcceecCCCCCcCCCCCCcCeecc
Confidence                            5899999999999994 43211111       11223345679999999999999999999999


Q ss_pred             HhH
Q 001181         1068 AMR 1070 (1131)
Q Consensus      1068 a~~ 1070 (1131)
                      +.|
T Consensus       242 ~~~  244 (258)
T d1jy1a2         242 IPY  244 (258)
T ss_dssp             SCB
T ss_pred             CCc
Confidence            977
>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure