Citrus Sinensis ID: 001182

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130-
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLDIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
ccccHHHHHccccccHHHHHHcccccccHHHHccccHHHHHHHHcccccccHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHccccccccccHHHHHHHHcccHHHHHHHccccccHHHHHHHHHcccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEccccccccccc
ccHHHHHHHccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcEccccccccccccccccHHHHHHHcccccccHHHccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccHHHHccccccccccccEEccHHHHHHHHcccccccccccccccccHHcccccccccccccccccHHHcccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHccccccHcccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccEEEccccHHHcHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccEEEEEEcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEcccccccccccccccEEEcccccccccccccccccccccccHHccccccccccccccEEccccccccccccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccccccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHccccccccccEEEHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEcccccHHHccc
MFYSQFIlakkgplgTIWIAAHLERKLrknqvadtdigvsvdsilfpdvPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhsitlpetfdlddfelpdndifqgnyvdhhvstreqitlqdtmdgmaystsqfglderfgdgdasqmgldldedllldkgtaaghgvsdadpqgsvkptthweqDNISERMNEIseertvndganqlervgldaepieyaeapstpglvqepnlssgqKALAsydhfesedqnsnelmATESrvndlsnsdchngdghtadwplhkdsnhdtvqcmlpekngyhvrDAAVKQAEsldihacpdakdpkmlnidvAHEETASVSinvlkpcsyhtsdphmsspghdnslaqnlqplgvdlhsserskmnqasvdvqgeecyltdvmqseksqisgpsvcgdiqedngtldepldnatasNNELKKLnnsitsdlpapekllsvpegllnkpndlivestpekevlagsggvdagnklnsgkkrsyteSTITVeslnssesfgvdrtkrnsefipddddllSSILVgrkssvlkmkptppvrevasrkraRSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIrkkapctgpEILMIQMQFLeddifnepiftgmsaeLTSVHCEihdlskisisetdkdhgsseiandigcsiapnvieggkqgskepvalrnngdtqpaetsiqteshqgidhqfgaqntdaqghinsdtDVVKTVqneplaelnemdvdrgnvevaeeascsvnhgfgtssqtdvasaevcnqptgdktntvdaSLLVDtvcltpeptvdaqpvevgtsvakmdnakgvedtevIDRNIENIVAVETeakgtdgvlveegkvgvsvengadvetdrsVLTDAvntqegvsletggyndlaaangdnsrlevrnedgplagdwgsngkdptsnhmfseepvidstnsvelggdtinvslddgksqvdlrspmddgrmeieevtigndteflnvnddevaedyddgdgcpedarvlensgwssrTRAVSKYLQTLFvrepvqgrkVLALDHLLVGKTRKEASRMFFETLVLKTKdyihveqarpldninikpgaklmkadf
MFYSQFIlakkgplgTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGhgvsdadpqgsvkptthweqdNISERMNEIseertvndganQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLDIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKevlagsggvdagnklnsgkkrsytestitveslnssesfgvdrtkrnsefipddddllssilvgrkssvlkmkptppvrevasrkrarsasqtnalkrkvlmddtmvlhgdvirqqltntedirrirkkapctgpEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTpeptvdaqpvevgtsvakmdnakgvedtevidrNIENIVAVeteakgtdgvlveegkvgvsvengadvetdrsVLTDAVNtqegvsletggyndLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTInvslddgksqvdlrspmddgRMEIEEvtigndteflnVNDDEVAEDYDDGDGCPEDARvlensgwssrtRAVSKYLQTLfvrepvqgrkvlaldhllvgktrkeaSRMFFETLVLKtkdyihveqarpldninikpgaklmkadf
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGldldedllldKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLDIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPddddllssILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLnvnddevaedyddgdgCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
**YSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDL*******PYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAY********************************************************************************************************************************************************************VQCMLPEKNGYHVRDAAVKQAESLDIHACP******MLNIDVAHEETASVSINVLKPC*************************************************Y***********************************************************************************************************************************************************************************KVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKIS***************DIGCSIA**********************************************************************************************************************TVDASLLVDTVCLTPEPTVDA**V*V***********GVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVE*******************************************************************************************************************IGNDTEFLNV*************************GWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNIN************
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVD******TAPYHSITLPETFDLDDFELPDNDIFQ***********************************************LDEDLLL****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LMDDTMVLHGDVI********************GPEI***********IFNEPIFTGMSAELTSVHCEIHDL******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AVSK**********************LVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLM****
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLDIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSY************DNSLAQNLQPLGVDLHSS***********VQGEECYLTDVMQ**********VCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKM*********************NALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISIS********SEIANDIGCSIAPNVIEGGKQGSKEPVALRN***************HQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGD*DASQMGLDLDEDLLL**********************************************************************************************************************************************************************AKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSE************************************************************************************NKPNDLIVESTP*****************************************************PDDDDLLSSILVGRKSSVLKM***********************LKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSE****************************************************GAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEAS******************E**N********TVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGD*********D*PLAGDW********SNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAE****GDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPG********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLDIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1131 2.2.26 [Sep-21-2011]
Q61550635 Double-strand-break repai yes no 0.185 0.330 0.401 1e-35
Q9FQ19693 Sister chromatid cohesion no no 0.129 0.210 0.486 2e-35
Q3SWX9630 Double-strand-break repai yes no 0.160 0.288 0.438 2e-35
O60216631 Double-strand-break repai yes no 0.160 0.288 0.438 2e-35
O93310629 Double-strand-break repai N/A no 0.144 0.259 0.470 6e-35
A2AU37552 Double-strand-break repai no no 0.138 0.284 0.459 2e-33
Q9H4I0556 Double-strand-break repai no no 0.138 0.282 0.459 3e-33
D2HSB3554 Double-strand-break repai no no 0.138 0.283 0.459 9e-33
Q9FQ20810 Sister chromatid cohesion no no 0.135 0.188 0.428 4e-28
P30776628 Cohesin subunit rad21 OS= yes no 0.116 0.210 0.444 4e-26
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3 Back     alignment and function desciption
 Score =  152 bits (384), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 136/234 (58%), Gaps = 24/234 (10%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFY+ F+L+K+GPL  IW+AAH ++KL K  V + ++  SV+SI+ P V +ALR S HLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
           LGVVRIY RK  YL  DC+EA +KIK AFR   VDLP E   A Y++ITLPE F   D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
           LPD +DI        + S  E+IT+++ +  ++         FG+D+R    +G A +  
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178

Query: 174 LDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVND 227
              D+D+L+   T+A + +   +P+ S          N++E+MN +  E    D
Sbjct: 179 ---DDDMLV--STSASNLL--LEPEQSTS--------NLNEKMNHLEYEDQYKD 217
Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Mus musculus (taxid: 10090)
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2 Back     alignment and function description
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1 Back     alignment and function description
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 Back     alignment and function description
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1 Back     alignment and function description
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2 Back     alignment and function description
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3 Back     alignment and function description
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1 Back     alignment and function description
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2 Back     alignment and function description
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1131
2241091801065 predicted protein [Populus trichocarpa] 0.922 0.979 0.513 0.0
2960833951133 unnamed protein product [Vitis vinifera] 0.901 0.900 0.491 0.0
2978076571030 hypothetical protein ARALYDRAFT_909607 [ 0.893 0.981 0.452 0.0
223268391031 cohesin complex subunit SCC1 [Arabidopsi 0.895 0.982 0.453 0.0
97558371021 putative protein [Arabidopsis thaliana] 0.886 0.982 0.445 0.0
255547434 1247 cohesin subunit rad21, putative [Ricinus 0.669 0.607 0.491 1e-178
359495890 1335 PREDICTED: uncharacterized protein LOC10 0.656 0.555 0.452 1e-163
2241012591208 predicted protein [Populus trichocarpa] 0.661 0.619 0.454 1e-159
374095603 1336 cohesin subunit [Camellia sinensis] 0.690 0.584 0.400 1e-135
323095421055 cohesin-like protein [Oryza sativa Indic 0.554 0.594 0.426 1e-131
>gi|224109180|ref|XP_002315112.1| predicted protein [Populus trichocarpa] gi|222864152|gb|EEF01283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1153 (51%), Positives = 752/1153 (65%), Gaps = 110/1153 (9%)

Query: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV-DSILFPDVPIALRLSSHL 59
            MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV DSILFP+VPIALRLSSHL
Sbjct: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVADSILFPEVPIALRLSSHL 60

Query: 60   LLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDF 119
            LLGVVRIYSRKVNYLFDDCSEALLK+KQAFRSTAVDLPPEESTAPYHSITLPETFDLDDF
Sbjct: 61   LLGVVRIYSRKVNYLFDDCSEALLKVKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDF 120

Query: 120  ELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDED 179
            ELPDND FQGNYVDHH+STREQITLQDTMDG+ YSTSQFGLDERFGDGD S +GLD++E 
Sbjct: 121  ELPDNDFFQGNYVDHHISTREQITLQDTMDGVVYSTSQFGLDERFGDGDTSHVGLDIEEV 180

Query: 180  LLLD---KGTAAGHGVSDADPQGSVKPTTHWEQDNI---SERM--NEISEERTVNDGANQ 231
            + L       A+  G+      G        E  ++   +E M  N I  ++ V+  +N 
Sbjct: 181  IFLCLRLNVFASWVGIYIDMHYGRYADRKVEEDHDMIGGAEAMPVNGIRNKQMVSQASN- 239

Query: 232  LERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVND 291
                   +E ++YA+APSTPGL++EPNLSS Q  LA  DH ESED N  E++  ES  N 
Sbjct: 240  -------SESLDYAQAPSTPGLIEEPNLSSVQDGLACDDHLESEDHNLTEVVGIESTGNA 292

Query: 292  LSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLDIHACPDAKD 351
             + S        ++  PL             PE       D A          AC   +D
Sbjct: 293  SNLSSLGKTVDASSGCPLE--------LAGAPE-------DVA---------QACEGPED 328

Query: 352  PKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSK 411
            P  LN +V +E+  + S+ +L+ C+ H ++P  SS G +N     L P   D+ S E + 
Sbjct: 329  PDTLNKNVDNEKIHT-SMGMLRACNSHLNEPDSSSHGINN---DELPPEPQDVPSREEA- 383

Query: 412  MNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLN 471
                   + GEEC+ TD  QS ++QIS  ++ G+IQ   G  DE  DNA  S+N+L+ LN
Sbjct: 384  -------LHGEECHATDGTQSVENQISELNLHGEIQV-GGKQDEQPDNAFYSDNQLENLN 435

Query: 472  NSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTE 531
             S+T++LP PEKLLSVP+ LL+KPNDL+VESTP+KE++ G     AG  + +GKKRS+TE
Sbjct: 436  GSLTAELPTPEKLLSVPQELLDKPNDLLVESTPDKEMVDGGDRSSAGTNI-TGKKRSFTE 494

Query: 532  STITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRK 591
            +++TV+SLNS +SFGV R+KR  + IPDDDDLLSSILVGR+SSVLKMKPTPP  EVAS K
Sbjct: 495  NSLTVQSLNSIDSFGVSRSKRTVDSIPDDDDLLSSILVGRRSSVLKMKPTPPAPEVASMK 554

Query: 592  RARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFL 651
            RARS S+ +A+KRKVLMDD+MVL GD IRQQLTNTEDIRR+RKKAPCT  EIL IQ Q L
Sbjct: 555  RARSVSRPSAMKRKVLMDDSMVLLGDTIRQQLTNTEDIRRLRKKAPCTRTEILTIQRQSL 614

Query: 652  EDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGG 711
            +++IF+EP+ TGMSAELT +  E  DLS+I ++E D ++ SSE+A D   S  P V +  
Sbjct: 615  DEEIFSEPVLTGMSAELTCLQSETFDLSRIDLAENDDNNTSSEVAKD---SRRPTVAQDN 671

Query: 712  K-QGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNE 770
            + + S E    RN+ D QPAE+ I TE+ QG D Q                     ++++
Sbjct: 672  ELEASTELANCRNDVDGQPAESPIWTENQQGEDQQ---------------------LKHK 710

Query: 771  PLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTG----DKTNTVDA 826
             L E+ EM++D+ N E+A+ A+ +    F   S T++ S +  N   G    D T   D 
Sbjct: 711  TLGEMTEMEIDKENTEIADAANHAAVLQF-EGSHTELISGDAGNMLDGLALMDSTIDEDG 769

Query: 827  SLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDG 886
            SL +DT  L P   +D +  E   ++  + + K ++D  ++D + +N+VAV TE +    
Sbjct: 770  SLHMDTSIL-PSDMMDTELFEEA-ALRDVGDGKTLDDG-ILDHHTKNVVAVVTELREGGE 826

Query: 887  VLVEEGKVGVSVENGADVETDRSVLTDAVNT-QEGVSLETGGYNDLAAANGD-------N 938
            +L+EE K G  VE G D++ D S  +D  +     +S + GG  +LA+ N D       N
Sbjct: 827  ILLEESKAGAPVEVGVDLQADGSAPSDDADMLLANMSSKNGGCINLASVNVDQTQDDVEN 886

Query: 939  SRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVD 998
             +L   NEDG LA   G   KD   NH+ SE+  ++S     L GD  N SL+ G     
Sbjct: 887  DKLGDGNEDGVLAVSPGHADKDREFNHLCSEDK-MNSAFPRGLDGDFKNASLNFGD---- 941

Query: 999  LRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAV 1058
                     +++++V   NDTEFLNV+DD   ED D   G PEDAR+L+NSGWSSRTRAV
Sbjct: 942  --------YLDLQDVAFANDTEFLNVDDDMGEEDDDGMPG-PEDARLLDNSGWSSRTRAV 992

Query: 1059 SKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNI 1118
            +KY+QT+F  E   GRKV+++D LL GKTRKEASRMFFETLVLKT+DYIHVEQ +P D+I
Sbjct: 993  AKYVQTIFDNEGGNGRKVISVDSLLAGKTRKEASRMFFETLVLKTRDYIHVEQLKPFDSI 1052

Query: 1119 NIKPGAKLMKADF 1131
            N+KP AKLMK+DF
Sbjct: 1053 NVKPRAKLMKSDF 1065

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083395|emb|CBI23350.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807657|ref|XP_002871712.1| hypothetical protein ARALYDRAFT_909607 [Arabidopsis lyrata subsp. lyrata] gi|297317549|gb|EFH47971.1| hypothetical protein ARALYDRAFT_909607 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22326839|ref|NP_197131.2| cohesin complex subunit SCC1 [Arabidopsis thaliana] gi|18157649|gb|AAL62060.1|AF400129_1 RAD21-3 [Arabidopsis thaliana] gi|332004884|gb|AED92267.1| cohesin complex subunit SCC1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9755837|emb|CAC01868.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255547434|ref|XP_002514774.1| cohesin subunit rad21, putative [Ricinus communis] gi|223545825|gb|EEF47328.1| cohesin subunit rad21, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359495890|ref|XP_002265684.2| PREDICTED: uncharacterized protein LOC100263480 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101259|ref|XP_002312205.1| predicted protein [Populus trichocarpa] gi|222852025|gb|EEE89572.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|374095603|gb|AEY85029.1| cohesin subunit [Camellia sinensis] Back     alignment and taxonomy information
>gi|32309542|gb|AAP79440.1| cohesin-like protein [Oryza sativa Indica Group] gi|218189531|gb|EEC71958.1| hypothetical protein OsI_04789 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1131
TAIR|locus:21814571031 SYN4 "sister chromatid cohesio 0.432 0.474 0.467 4.2e-132
TAIR|locus:2164501810 SYN2 [Arabidopsis thaliana (ta 0.137 0.191 0.427 2.8e-42
TAIR|locus:2097548693 SYN3 "AT3G59550" [Arabidopsis 0.259 0.424 0.348 3.6e-41
UNIPROTKB|O60216631 RAD21 "Double-strand-break rep 0.231 0.415 0.347 9.1e-37
UNIPROTKB|Q3SWX9630 RAD21 "Double-strand-break rep 0.231 0.415 0.347 1.6e-36
UNIPROTKB|E2QRU9631 RAD21 "Uncharacterized protein 0.231 0.415 0.347 1.6e-36
UNIPROTKB|F1S1K0631 LOC100738633 "Uncharacterized 0.231 0.415 0.347 1.6e-36
UNIPROTKB|O93310629 rad21 "Double-strand-break rep 0.230 0.414 0.349 3.6e-36
UNIPROTKB|F1NYD0633 RAD21 "Uncharacterized protein 0.144 0.257 0.470 4.7e-36
ZFIN|ZDB-GENE-060503-223637 rad21b "RAD21 homolog (S. pomb 0.221 0.394 0.368 5.1e-36
TAIR|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 964 (344.4 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
 Identities = 255/546 (46%), Positives = 311/546 (56%)

Query:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
             MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+ PIALRLSSHLL
Sbjct:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query:    61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
             LGVVRIYSRKVNYLFDDCSEALLK+KQAFRS AVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct:    61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query:   121 LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGXXXXXXX 180
             LPDN+IFQGNYVDHHVST+EQITLQDTMDG+ YSTSQFGLDERFGDGD SQ         
Sbjct:   121 LPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAALDLDEAV 180

Query:   181 XXXKGTAAG--HGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLD 238
                K        GV   D    +          I + M  +SE   ++    Q+E + ++
Sbjct:   181 FQDKDVIGSDDEGVPGIDHNAYLDAAA----PGIKDSMEGVSEAMPMDFNEEQVEDLAMN 236

Query:   239 AEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQN-------SNELMATE--SRV 289
              E IE A+AP TPGLV+ PN SS ++ +A  DH + ED N       S EL A E   R 
Sbjct:   237 NEFIEDAQAPQTPGLVEVPNSSSVREQMACDDHMDVEDLNAEEGIKSSGELNANEMPKRG 296

Query:   290 NDLSNSDCHNGDGHTADWPLHKDSNH--DTVQCML-PEKNGYHVRDAAVKQAESLDIHAC 346
              DLS+   +N    +A  P+  D +   + V     PE+     R   V        H  
Sbjct:   297 EDLSSE--YNAP-ESAVTPVEVDKSQIDENVNTQNEPEEE----RAEHVHVTSPCCSHIT 349

Query:   347 PDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDN----SLAQNL-QPLG 401
              + +DP      V +E  A+V  +  KP +     P + +PG +N    ++A  + Q   
Sbjct:   350 TEMEDPGQ----VMNEAGANVVPD--KPDAV----PPLETPGEENRDHFAIATEVNQETD 399

Query:   402 VDLHSSERS------KMNQA-SVDVQ-GEECYLTDV-MQSEKSQISGPSVCGD----IQE 448
               L   E++      ++N A   D Q G     TD      +  ++ P+  GD    + E
Sbjct:   400 SSLQGDEQAYSRPDGQLNNAHETDEQLGNLTGFTDSDFPPPEKVLAVPNRQGDGNDFMVE 459

Query:   449 DNGTLDEP-LDNATASNNELKKLNNSITSDLPAPEKLLSVPE-GLLNKPNDLIVESTPEK 506
                  ++P   N  A NN +     + T      E L SV   GL+        +S P+ 
Sbjct:   460 STPDKEDPGTCNDDAGNNNITGKKRTFTESTLTAESLNSVESVGLIQSKRT--ADSVPDD 517

Query:   507 EVLAGS 512
             + L  S
Sbjct:   518 DDLLSS 523
GO:0000228 "nuclear chromosome" evidence=IEA
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0007062 "sister chromatid cohesion" evidence=ISS;IMP
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
TAIR|locus:2164501 SYN2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O93310 rad21 "Double-strand-break repair protein rad21 homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYD0 RAD21 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-223 rad21b "RAD21 homolog (S. pombe) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X1442
hypothetical protein (1066 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1131
pfam04825110 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec 4e-50
pfam0482455 pfam04824, Rad21_Rec8, Conserved region of Rad21 / 9e-16
>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein Back     alignment and domain information 
 Score =  172 bits (437), Expect = 4e-50
 Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYS  +L KKGPL T+W+AA LE+KL + Q+ + DI  S + IL P+ PIALRLS  LL
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFR-STAVDLPPEESTAPYHSITLP 111
            GVVRIYSRKV YL +DC+EAL ++K+AFR    +DLP  E  A  +++TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQLDLP--ERKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110
>gnl|CDD|113590 pfam04824, Rad21_Rec8, Conserved region of Rad21 / Rec8 like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1131
KOG1213614 consensus Sister chromatid cohesion complex Cohesi 100.0
PF04825111 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot 100.0
PF0482455 Rad21_Rec8: Conserved region of Rad21 / Rec8 like 99.63
PF02616242 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 Thi 96.28
PRK00104242 scpA segregation and condensation protein A; Revie 95.84
COG1354248 scpA Rec8/ScpA/Scc1-like protein (kleisin family) 92.89
PRK00478505 scpA segregation and condensation protein A/unknow 86.68
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-61  Score=555.31  Aligned_cols=481  Identities=32%  Similarity=0.421  Sum_probs=294.9

Q ss_pred             CCcchhhhhccCCchhhhhhhhccCcCcchhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEeccchhHHHhHHH
Q 001182            1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE   80 (1131)
Q Consensus         1 MFYS~~LLsKKGpLa~IWLAATl~KKLsKkqIl~tDI~ksceeIl~Pe~PLALRLSGqLLlGVVRIYSRKvkYLL~Dcn~   80 (1131)
                      |||||+||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||||||||+||||||||||+|||+|||+
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccCCccccCccCccCCccCcccCccccccccCCC
Q 001182           81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGL  160 (1131)
Q Consensus        81 aL~KIk~aFRs~~VDLP~e~~~A~~eaITLPE~fdLDDfeLPd~d~l~~d~~d~Hqs~~EdITL~D~~~~~v~gas~F~~  160 (1131)
                      +|.|||++||+++||+|....+.++.+||||++|++|++++|+ .+             +.|.+.+.   +....++++.
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~-~~-------------~~~~~~~~---~~~~~~~~~l  143 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD-EI-------------TDIDLYDD---FSIPQSRNNL  143 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc-cc-------------cccccccc---cCccccccch
Confidence            9999999999999999999999999999999999999998885 11             01111111   1122223333


Q ss_pred             CCCCCCCCCCCCCCCcchhccccccccccCCcccCCCCCCCCCCCcccccchhhhcccccccccccCCCCcccccCCCcc
Q 001182          161 DERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAE  240 (1131)
Q Consensus       161 DErFg~g~sS~~GlDLDedl~~~~~~~~~~~~~~~~~~~sv~p~~~~~~d~~~e~~~~~s~~~~~~~~~~~~~~~~~~~e  240 (1131)
                      ++++..++.++   ...+.+-.+..+....-.......+++.       ...+       ..|. |     ...+..+..
T Consensus       144 de~~~~~~~~~---~~~~~~q~~~~~g~~~~~~~~~~~~~~~-------E~~~-------~~~~-~-----~s~~~~d~~  200 (614)
T KOG1213|consen  144 DEITLLEDIEQ---LSIESLQLDDEFGEDFEGAPTPHNETYM-------ESFR-------HDME-N-----DSALTEDSI  200 (614)
T ss_pred             hhhhcccCCCC---Cccccccccccccccccccccccccccc-------chhc-------cccc-c-----ccccccccc
Confidence            44333222211   0000000000000000000000000000       0011       1121 1     334445556


Q ss_pred             ccccccCCCCCCCccCCCCccccccc-ccCcccccccccchhhhhhcccccCCCCCcccCCCCCCCCCCCCCCCCCCcce
Q 001182          241 PIEYAEAPSTPGLVQEPNLSSGQKAL-ASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQ  319 (1131)
Q Consensus       241 ~~~~aqaP~tpgl~eepn~s~v~~~~-~~~d~~~~e~~n~~~~~~~e~~~n~~s~~~~~~~~~~~~~~~~~~~~~~~~v~  319 (1131)
                      +++   +|.||+++.+.+-++...-. .+.+|..-+..+-+-  |.....-...+-..+.++   ...+..|.++     
T Consensus       201 ~~~---~~~tp~~~~e~~~s~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----  267 (614)
T KOG1213|consen  201 FIE---GPTTPNLVLESERSRSREEPGSNEDDEDGDEEEDDR--GTQGSESPTENNIHKVED---HDSSEENNLD-----  267 (614)
T ss_pred             ccc---CCCCCcccccCccccccccccccccccchhhhhhhh--ccccCCCcchhhccCCcc---cccccccccc-----
Confidence            665   99999999999998877644 666666655543322  333332111111122111   0111110000     


Q ss_pred             ecCCcCCCccchhhhhhhccccccccCCCCCCccccccccccccccccccccccccccCCCCCCCCCCCCCcchhhccCC
Q 001182          320 CMLPEKNGYHVRDAAVKQAESLDIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQP  399 (1131)
Q Consensus       320 ~~~~~~~~~~~~d~~i~q~~s~d~~~c~~~~~~~~ln~~~~~~~~~~~~~~~l~~C~~~~~~p~~~~~~~~~~~~~~~~~  399 (1131)
                                .|...+-             +++-...-..-++...+.-  +.-+|..|...++..              
T Consensus       268 ----------~ge~~~~-------------~~~~~~~~~~~~E~~~~ap--~~~~~~~~~~~~~~~--------------  308 (614)
T KOG1213|consen  268 ----------DGETSAF-------------EDPPTSPEEAEEERALPAP--VGIESVSHDEPDSIL--------------  308 (614)
T ss_pred             ----------ccccccc-------------ccCCcccccCcccccccCC--CCccccccCCcchhc--------------
Confidence                      0000000             0000000000000000000  001122221111000              


Q ss_pred             CccccccccccccccccccccCceeeccccccccccccCCCCCccccccCCCCcCccchhhhccchhhhcccc-ccCCCC
Q 001182          400 LGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNN-SITSDL  478 (1131)
Q Consensus       400 ~~~~~~~~e~~~~~~~~~~vqge~c~~~d~~~~~~~~~s~~~~~~~~~~d~~k~d~~~~~~~~s~~~~e~ln~-~~~se~  478 (1131)
                                         =-++.--..++....                ....+          .|+..... ....++
T Consensus       309 -------------------~~~r~~~vd~~~~l~----------------~~~~~----------~ql~d~s~~~~~~~~  343 (614)
T KOG1213|consen  309 -------------------RRKRKLSVDGVTLLS----------------EEEFK----------EQLADFSDILTSLDL  343 (614)
T ss_pred             -------------------ccccccccccceecC----------------chhHH----------hhhcChhhhcccccc
Confidence                               000111111211111                01111          12222222 455678


Q ss_pred             CCcccccccCccccCCCCcccccccCccccccCCCCcccCcccccccccccccccccccccccccccccccccccCCCCC
Q 001182          479 PAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIP  558 (1131)
Q Consensus       479 p~pEklLs~p~~~~~~~~dll~e~Tp~k~~~~~~~~~~ag~~~isgkKRs~test~t~~S~~s~es~g~~~skrt~esiP  558 (1131)
                      +.|+|.|-.|.. -+.-.+|...-.|++.    .+.     ..++||.+.+++++..-.+.+..+..  ..+.+..-+|.
T Consensus       344 ~Pp~~~l~~~~~-~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~ei~  411 (614)
T KOG1213|consen  344 APPTRVLMMPKE-TGRVEKLFSSPEPDLF----ANR-----LLFTGRLFLSLESLKPEDSVNREEGS--SNSDEFLREIE  411 (614)
T ss_pred             CChHHHhhcccc-ccchhhhccCCCcccc----ccc-----ccccccchhhhhcccccccccccccc--cccccchhhcC
Confidence            888888888887 4444567766666655    111     12889999999999999999988876  88888899999


Q ss_pred             CCchhhhhhhcccccccccccCCCCchhhhhhhcccccccchhhhcccccccceeehhhhhhhhhcChHHHHHhhhcCCC
Q 001182          559 DDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPC  638 (1131)
Q Consensus       559 dDdDlLsSILVGrrss~lkmkptP~~pe~~smKr~R~~sr~~a~KRKv~mDD~MVlhgD~IRQQLt~TEDIRRiRkKAPC  638 (1131)
                      .+++.++.+.|++.+             ...-|+-+...++-+..|++.+++.|..+.+++.+|..++.||.++++++||
T Consensus       412 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~aq~~~~~~~~~~~~~~~~  478 (614)
T KOG1213|consen  412 RDVEPLSPANVSVAS-------------LDVSKQESPEQASDAVSREFLSPLEPREEDSIPDAQSMPSQDNILIPKEVPT  478 (614)
T ss_pred             CchhcccCccccccc-------------ccCCcccChhhhcccccccccCCcchhhcccCCCcccccccccccccccccC
Confidence            999999999998221             1122556666788889999999999999999999999999999999999999


Q ss_pred             Cccce
Q 001182          639 TGPEI  643 (1131)
Q Consensus       639 Tr~EI  643 (1131)
                      +-.++
T Consensus       479 ~~~~~  483 (614)
T KOG1213|consen  479 PNPEP  483 (614)
T ss_pred             cccCC
Confidence            99887

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families Back     alignment and domain information
>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families Back     alignment and domain information
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ] Back     alignment and domain information
>PRK00104 scpA segregation and condensation protein A; Reviewed Back     alignment and domain information
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair] Back     alignment and domain information
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1131
1w1w_E121 SCC1, sister chromatid cohesion protein 1; cohesin 9e-20
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57 Length = 121 Back     alignment and structure
 Score = 85.2 bits (210), Expect = 9e-20
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 1025 NDDEVAEDYDD--GDGCPEDARVLENSGWSSRTRAVSKYLQTLFV-REPVQGRKVLALDH 1081
             ++ +     +       E  R       S     ++K L+      + V    VL    
Sbjct: 10   EENIIDAKTRNEQTTIQTEKVRPTPGEVASKAIVQMAKILRKELSEEKEVIFTDVLKSQA 69

Query: 1082 --LLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1126
                   T++EASR FF+ L L T+  I + Q     NI I     L
Sbjct: 70   NTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPAL 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1131
1w1w_E121 SCC1, sister chromatid cohesion protein 1; cohesin 99.88
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57 Back     alignment and structure
Probab=99.88  E-value=1.2e-23  Score=201.15  Aligned_cols=85  Identities=28%  Similarity=0.356  Sum_probs=64.4

Q ss_pred             ccchhccccCCccHHHHHHHHHHHHhhccCCCCCCceeeHHHHhc--------cCCHHHHHHHHHHhhhccCCCceeecC
Q 001182         1040 PEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--------GKTRKEASRMFFETLVLKTKDYIHVEQ 1111 (1131)
Q Consensus      1040 ~ee~q~~Ee~~WSKRT~qma~~LRt~F~~~~~~G~~slSfsqLl~--------G~TRKeAAr~FYElLVLKTrd~IdVeQ 1111 (1131)
                      .|+.+..++.+|||||++|+++||.+|..+     ++++|++|+.        |+|||+||++|||+|||||+|||+|+|
T Consensus        27 ~e~v~~~~~~~~Sk~T~~v~~~Lr~~f~~~-----~~vsfs~LL~~~~~~~~~~~tRkeAAr~FFElLVLaT~d~I~VeQ  101 (121)
T 1w1w_E           27 TEKVRPTPGEVASKAIVQMAKILRKELSEE-----KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQ  101 (121)
T ss_dssp             -------------CHHHHHHHHHHHHTTSC-----SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             ccceeeccCCcccHHHHHHHHHHHHHhCCC-----CCccHHHHHhhccccccCCCCHHHHHHHHHHHHHHccCCeeEEec
Confidence            467777899999999999999999999875     5899999974        889999999999999999999999999


Q ss_pred             CCCCcceEeccCCccccc
Q 001182         1112 ARPLDNINIKPGAKLMKA 1129 (1131)
Q Consensus      1112 eEPYGDI~IsaGPkL~ks 1129 (1131)
                      .+|||||.|++||+||..
T Consensus       102 ~epyGdI~I~~~p~L~~~  119 (121)
T 1w1w_E          102 TEAFGNIKIDAKPALFER  119 (121)
T ss_dssp             CSTTCCEEEEECGGGC--
T ss_pred             CCCCCceEEeeCchhhhh
Confidence            999999999999999863

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1131
d1w1we_79 a.4.5.57 (E:) Sister chromatid cohesion protein 1 1e-14
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 1056 RAVSKYLQTLFVREPVQGRKVLALDHLLVGK--------TRKEASRMFFETLVLKTKDYI 1107
            +A+ +  + L  R+ +   K +    +L  +        T++EASR FF+ L L T+  I
Sbjct: 1    KAIVQMAKIL--RKELSEEKEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCI 58

Query: 1108 HVEQARPLDNINIKPGAKLMK 1128
             + Q     NI I     L +
Sbjct: 59   GLSQTEAFGNIKIDAKPALFE 79

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1131
d1w1we_79 Sister chromatid cohesion protein 1 (SCC1), C-term 99.79
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.6e-20  Score=166.44  Aligned_cols=71  Identities=30%  Similarity=0.423  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCceeeHHHHhc--------cCCHHHHHHHHHHhhhccCCCceeecCCCCCcceEeccCC
Q 001182         1053 SRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--------GKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA 1124 (1131)
Q Consensus      1053 KRT~qma~~LRt~F~~~~~~G~~slSfsqLl~--------G~TRKeAAr~FYElLVLKTrd~IdVeQeEPYGDI~IsaGP 1124 (1131)
                      |||.+||+.||++|...     +.+.|++|+.        +.|||+||++||++|||||++||+|+|.+|||||.|++||
T Consensus         1 K~t~q~a~~Lr~el~~~-----~~v~Fsdll~~~~~~~~~~~tR~~Aa~~Fy~~LvL~t~~~i~v~Q~~pygdI~I~~~p   75 (79)
T d1w1we_           1 KAIVQMAKILRKELSEE-----KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP   75 (79)
T ss_dssp             CHHHHHHHHHHHHTTSC-----SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEECG
T ss_pred             ChHHHHHHHHHHHHccc-----CceehhhhhhhhhcccccCCCHHHHHHHHHHHHHHccCCeEEEEcCCCcCceEEeeCc
Confidence            68999999999999876     5799999975        7899999999999999999999999999999999999999


Q ss_pred             cccc
Q 001182         1125 KLMK 1128 (1131)
Q Consensus      1125 kL~k 1128 (1131)
                      +||+
T Consensus        76 ~l~~   79 (79)
T d1w1we_          76 ALFE   79 (79)
T ss_dssp             GGC-
T ss_pred             cccC
Confidence            9996