Citrus Sinensis ID: 001195
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1126 | ||||||
| 255543250 | 1121 | conserved hypothetical protein [Ricinus | 0.995 | 1.0 | 0.834 | 0.0 | |
| 225425300 | 1121 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 1.0 | 0.839 | 0.0 | |
| 224057860 | 1115 | predicted protein [Populus trichocarpa] | 0.990 | 1.0 | 0.808 | 0.0 | |
| 224072457 | 1122 | predicted protein [Populus trichocarpa] | 0.995 | 0.999 | 0.809 | 0.0 | |
| 449469232 | 1177 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.954 | 0.755 | 0.0 | |
| 297807367 | 1123 | hypothetical protein ARALYDRAFT_488158 [ | 0.991 | 0.993 | 0.741 | 0.0 | |
| 15240619 | 1123 | no exine formation 1 [Arabidopsis thalia | 0.991 | 0.993 | 0.736 | 0.0 | |
| 356567290 | 1118 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.996 | 0.738 | 0.0 | |
| 357501553 | 1164 | hypothetical protein MTR_7g006760 [Medic | 0.991 | 0.958 | 0.672 | 0.0 | |
| 218185855 | 1131 | hypothetical protein OsI_36328 [Oryza sa | 0.931 | 0.927 | 0.663 | 0.0 |
| >gi|255543250|ref|XP_002512688.1| conserved hypothetical protein [Ricinus communis] gi|223548649|gb|EEF50140.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1836 bits (4755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 940/1126 (83%), Positives = 1029/1126 (91%), Gaps = 5/1126 (0%)
Query: 1 MLPPELNPRSFRPYISASISAPSFNTSYNNLSSPYSNPSPNSNDNFNGAVNSSRSLKKSR 60
M+PPEL R FRPYI++SISA +S+NN S YS P+ N S +SR
Sbjct: 1 MIPPELQARPFRPYIASSISA-PSFSSFNNGRSSYS---PDPTPTPTPTSNFHSSPSRSR 56
Query: 61 FSPSSFAHNARIAIALVPCAAFLLDLGGSPVVTTITLGLMLAYIIDSLNFKSGSFFGVWF 120
F PSSFAHN RIA+ALVPCAAFLLDLGG+PVV T+TLGLM++YI+DSLNFKSG+FFGVWF
Sbjct: 57 FLPSSFAHNTRIALALVPCAAFLLDLGGAPVVATLTLGLMISYILDSLNFKSGAFFGVWF 116
Query: 121 SLIASQIAFFFSSSLFVTFNSIPLGLLATFLCAYTNFLIGTWASLQFKWIQIENPSIVLA 180
SLIA+QIAFFFSSSL TF S+PLGLLA LCA TNFLIG WASLQFKWIQ+ENP+IVLA
Sbjct: 117 SLIAAQIAFFFSSSLITTFYSLPLGLLAACLCANTNFLIGVWASLQFKWIQLENPTIVLA 176
Query: 181 LERLLFACLPFTASVIFTWATVSAVGMNNAAYYLMAFNCIFYWLYSIPRASSFKSKQEVK 240
LERLLFACLPF AS +FTWA++SAVGMNNA+YYLM FNCIFYWL++IPR SSFKSKQE K
Sbjct: 177 LERLLFACLPFAASSLFTWASISAVGMNNASYYLMIFNCIFYWLFAIPRVSSFKSKQEAK 236
Query: 241 YHGGEIPDDNLILSTLESCMHTLNLLFSPLLFHIASHYSVVFSSAASICDLFLLFFIPFL 300
+HGGEIPDD+ ILS LE C+HTLNLLF PLLFHIASHYSV+F+SAAS+CDLFLLFFIPFL
Sbjct: 237 FHGGEIPDDSFILSPLEGCLHTLNLLFCPLLFHIASHYSVIFTSAASVCDLFLLFFIPFL 296
Query: 301 FQLYASTRGALWWVTRNENQLHSIRVVNGALALIVVVICLEIRVVFHSFGKYIQVPPPVN 360
FQLYASTRGALWWVT+N +QLHSIRVVNGA+AL++VV+CLE+RVVFHSFG+YIQVPPP+N
Sbjct: 297 FQLYASTRGALWWVTKNAHQLHSIRVVNGAVALVIVVLCLEVRVVFHSFGRYIQVPPPLN 356
Query: 361 YLLVTTTMLGGATGAGAYALGMISDASSSVAFTALAVVVSAAAAIVVGFPLVFIAVPSIA 420
YLLVT TMLGGA GAGAYALG+ISDA SS AFTAL+V+VSAA AIVVG P++F+ +PS+A
Sbjct: 357 YLLVTLTMLGGAAGAGAYALGLISDALSSFAFTALSVIVSAAGAIVVGLPILFLPLPSVA 416
Query: 421 GFYLARFFTKKSLPSYFAFVSLSSMMVIWFVMHNFWDLNIWLAGMSLKTFCKLIVADVVL 480
GFYLARFFTKKSLPSYFAFV L S+MVIWFV+HNFWDLNIWLAGMSLKTFCK IVA V+L
Sbjct: 417 GFYLARFFTKKSLPSYFAFVVLGSLMVIWFVLHNFWDLNIWLAGMSLKTFCKFIVASVIL 476
Query: 481 AMAVPGLALLPSKLHFMTEVALISHALLLCYIENRFFNYSSIYYYGLEDDIMYPSYMVIL 540
AMAVPGLALLPS+LHF+ EV LISHALLLCYIENRFFNYS IY+YGLEDD+MYPSYMVIL
Sbjct: 477 AMAVPGLALLPSQLHFLVEVGLISHALLLCYIENRFFNYSGIYFYGLEDDVMYPSYMVIL 536
Query: 541 TTFVGLALVRRLSVDNRIGPKAVWILTCLYSSKLAVLFITSKSVVWVSAILLLAVSPPLL 600
T FVGLALVRRLSVD+RIG K VWILTCLY SKLA+LFI+SKSVVWVSA+LLLA+SPPLL
Sbjct: 537 TAFVGLALVRRLSVDHRIGSKGVWILTCLYFSKLAMLFISSKSVVWVSAVLLLAISPPLL 596
Query: 601 LYKDKSRTASKMKAWQGYAHASVVALAVWFCRETIFEALQWWNGRPPSDGLLLGFCIILT 660
LYKDKSRTASKMK WQGYAHASVVAL+VW CRETIFEALQWWNGR PSDGLLLGFCIILT
Sbjct: 597 LYKDKSRTASKMKPWQGYAHASVVALSVWLCRETIFEALQWWNGRSPSDGLLLGFCIILT 656
Query: 661 GLACVPIVALHFSHVLSAKRCLVLVVATGVLFVLMQPPIPLSWTYRSDLIKAARQSADDI 720
GLAC+PIVALHFSHVLSAKR LVLVVATGVLF+LMQPPIPL+WTY SD+IKAARQS+DDI
Sbjct: 657 GLACIPIVALHFSHVLSAKRSLVLVVATGVLFILMQPPIPLAWTYHSDIIKAARQSSDDI 716
Query: 721 SIYGFMASKPTWPSWLIILAILLTLAAVTSIIPIKYIVELRAFYSIVMGIALGIYISAEF 780
SIYGFMASKPTWPSWL+I+AILLTLAAVTSIIPIKY+VELRAFYSI +GIALGIYISAE+
Sbjct: 717 SIYGFMASKPTWPSWLLIVAILLTLAAVTSIIPIKYMVELRAFYSIAIGIALGIYISAEY 776
Query: 781 FLQATVLHALIVVTMVGTCVFVVFTHFPSASSTKLLPWIFALLVALFPVTYLLEGQVRIK 840
FLQATVLH LIVVTMV T VFVVFTHFPSASSTK+LPW+FALLVALFPVTYLLEGQVRIK
Sbjct: 777 FLQATVLHVLIVVTMVCTSVFVVFTHFPSASSTKILPWVFALLVALFPVTYLLEGQVRIK 836
Query: 841 SILGDNGFGDFEEEDRKLTTLLAVEGARTSLLGLYAAIFMLIALEIKFELASLMREKAVE 900
SIL D GD EED KLTTLLAVEGARTSLLGLYAAIFMLIALEIKFELASLMREKA+E
Sbjct: 837 SILEDGRVGDMGEEDWKLTTLLAVEGARTSLLGLYAAIFMLIALEIKFELASLMREKALE 896
Query: 901 RGGIRHSHSSSQGSSTSFPPRMRFMQQRRASTVPTFSIKRMAAEGAWMPAVGNVATIMCF 960
RGGIR S S S+ S PRMRFMQQRRASTVPTF+IKRMAAEGAWMPAVGNVATIMCF
Sbjct: 897 RGGIRESQSGQSSSAGSA-PRMRFMQQRRASTVPTFTIKRMAAEGAWMPAVGNVATIMCF 955
Query: 961 AICLILNVNLTGGSNQAIFFLAPILLLLNQDSDFVAGFGDKQRYFPVTVAISGYLILSSL 1020
AICLILNVNLTGGSNQAIFFLAPILLLLNQDSDFVAGFGDKQRYFPV VAIS YL+L++L
Sbjct: 956 AICLILNVNLTGGSNQAIFFLAPILLLLNQDSDFVAGFGDKQRYFPVAVAISAYLVLTAL 1015
Query: 1021 YSIWQDVWHGNAGWGLEVGGPDWFFAVKNLALLILTFPSHIVFNRFVWSYTKQTDSTPLL 1080
YSIW+DVWHGN GWGLE+GGPDWFFAVKNLALLILTFPSHI+FNRFVWS TKQT STPL+
Sbjct: 1016 YSIWEDVWHGNTGWGLEIGGPDWFFAVKNLALLILTFPSHILFNRFVWSCTKQTGSTPLI 1075
Query: 1081 TLPLNLPSIIITDVIQVKVLGLLGIIYSLAQYIISRQQYISGLKYI 1126
TLPLNLPSIII+DVI++K+LG LGIIY++AQ +ISRQQYISGLKYI
Sbjct: 1076 TLPLNLPSIIISDVIKIKILGALGIIYTVAQTLISRQQYISGLKYI 1121
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425300|ref|XP_002268217.1| PREDICTED: uncharacterized protein LOC100259097 [Vitis vinifera] gi|296085545|emb|CBI29277.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224057860|ref|XP_002299360.1| predicted protein [Populus trichocarpa] gi|222846618|gb|EEE84165.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224072457|ref|XP_002303741.1| predicted protein [Populus trichocarpa] gi|222841173|gb|EEE78720.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449469232|ref|XP_004152325.1| PREDICTED: uncharacterized protein LOC101204901 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297807367|ref|XP_002871567.1| hypothetical protein ARALYDRAFT_488158 [Arabidopsis lyrata subsp. lyrata] gi|297317404|gb|EFH47826.1| hypothetical protein ARALYDRAFT_488158 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15240619|ref|NP_196843.1| no exine formation 1 [Arabidopsis thaliana] gi|7543906|emb|CAB87146.1| putative protein [Arabidopsis thaliana] gi|49614761|dbj|BAD26730.1| no exine formation-1 [Arabidopsis thaliana] gi|332004506|gb|AED91889.1| no exine formation 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356567290|ref|XP_003551854.1| PREDICTED: uncharacterized protein LOC100819962 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357501553|ref|XP_003621065.1| hypothetical protein MTR_7g006760 [Medicago truncatula] gi|355496080|gb|AES77283.1| hypothetical protein MTR_7g006760 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|218185855|gb|EEC68282.1| hypothetical protein OsI_36328 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1126 | ||||||
| TAIR|locus:2181650 | 1123 | NEF1 "NO EXINE FORMATION 1" [A | 0.992 | 0.995 | 0.625 | 0.0 |
| TAIR|locus:2181650 NEF1 "NO EXINE FORMATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3747 (1324.1 bits), Expect = 0., P = 0.
Identities = 707/1131 (62%), Positives = 840/1131 (74%)
Query: 1 MLPPELNPRSFRPYISASISAPSFXXXXXXXXXXXXXXXXXXXXXXXGAVNSSRSLKKSR 60
M+PPEL PR FRP+I+AS S P+ A +SRS SR
Sbjct: 1 MMPPELQPRLFRPHITASTSEPT----QSSSSYSPHMSPASTRNFIDRATPTSRS-NNSR 55
Query: 61 FSPSSFAHNARIAIALVPCAAFLLDLGGSPVVTTITLGLMLAYIIDSLNFKSGSFFGVWX 120
FSPSSFA+N RIAIALVPCAAFLLDLGG+PVV T+T+GL+++YI+DSLN K G F G+W
Sbjct: 56 FSPSSFAYNGRIAIALVPCAAFLLDLGGTPVVATLTIGLLISYIVDSLNVKFGGFLGIWM 115
Query: 121 XXXXXXXXXXXXXXXXVTFNSIPLGLLATFLCAYTNFLIGTWASLQFKWIQIENPSIVLA 180
+FNS+PLGLLA FLCA T FLIG W SLQFKW+Q+ENPSIV+A
Sbjct: 116 SLLAAQISFFFSSSLFSSFNSVPLGLLAAFLCAQTTFLIGCWTSLQFKWLQLENPSIVVA 175
Query: 181 LERLLFACLPFTASVIFTWATVSAVGMNNAAYYLMAFNCIFYWLYSIPRASSFKSKQEVK 240
LERLLFAC+PFTAS F WAT+SAVGMNN++YY + F C+FYW+++IPR SSFK+KQEVK
Sbjct: 176 LERLLFACVPFTASSFFAWATISAVGMNNSSYYFLLFACVFYWIFAIPRVSSFKTKQEVK 235
Query: 241 YHGGEIPDDNLILSTLESCMHTLNLLFSPLLFHIASHYSVVFSSAASICDXXXXXXXXXX 300
YHGGEIPDD+ IL LESC +LNL+F PLLFH+ASHYSV+FSSAAS+CD
Sbjct: 236 YHGGEIPDDSFILGQLESCFLSLNLMFMPLLFHVASHYSVIFSSAASVCDLLLLFFIPFL 295
Query: 301 XXXYASTRGALWWVTRNENQLHSIRVVNGALALIVVVICLEIRVVFHSFGKYIQVPPPVN 360
YASTRG LWWVT++ +QL SIR+VNGA+A++++VICLEIRVVF SFGKYIQVPPP+N
Sbjct: 296 FQLYASTRGGLWWVTKDSHQLQSIRIVNGAIAMVIIVICLEIRVVFRSFGKYIQVPPPLN 355
Query: 361 YXXXXXXXXXXXXXXXXXXXXMISDXXXXXXXXXXXXXXXXXXXXXXGFPLVFIAVPSIA 420
Y MIS GFP++F +P++A
Sbjct: 356 YLLVTTTLLGGAAGAGASVLGMISSALSSAFFTALSVIVSSAGAIVVGFPVLFTPLPAVA 415
Query: 421 GFYLARFFTKKSLPSYFAFVSLSSMMVIWFVMHNFWDLNIWLAGMSLKTFCKLIVADVVL 480
G Y ARFFTKKS+PSYFAFV+L S+MVIWFVMHN+WDLNIWLAGM LK+FCKLIVA++++
Sbjct: 416 GLYFARFFTKKSVPSYFAFVALGSLMVIWFVMHNYWDLNIWLAGMFLKSFCKLIVANIII 475
Query: 481 AMAVPGLALLPSKLHFMTEVALISHALLLCYIENRFFNYSSIYYYGLEDDIMYPSYMVIL 540
AM +PGL LLPSK HF+TE +++HALLLCYIE+RFFNYSSIYYYG+EDD+MYPSYMVIL
Sbjct: 476 AMVIPGLVLLPSKFHFLTEAGMVTHALLLCYIEDRFFNYSSIYYYGMEDDVMYPSYMVIL 535
Query: 541 TTFVGLALVRRLSVDNRIGPKAVWILTCLYSSKLAVLFITSKSVVWVXXXXXXXXXXXXX 600
T+ +GLA+VRRL D+RIG KAVWILTCLYS+KLA+LF++SKS+VWV
Sbjct: 536 TSLIGLAVVRRLFADHRIGQKAVWILTCLYSAKLAMLFLSSKSIVWVSAALLLAVSPPLL 595
Query: 601 XYKDKSRTASKMKAWQGYAHASVVALAVWFCRETIFEALQWWNGRPPSDGLLLGFCIILT 660
YK+KS++ASKMK WQGYAHA VVA++VWFCRETIF+ALQWW+GRPPSDGLLLG CI+L
Sbjct: 596 LYKEKSKSASKMKPWQGYAHAVVVAVSVWFCRETIFDALQWWHGRPPSDGLLLGSCIVLI 655
Query: 661 GLACVPIVALHFSHVLSAKRCLVLVVATGVLFVLMQPPIPLSWTYRSDLIKAARQSADDI 720
GLAC+PIVA HFSHVLSAKR LVLVVATG +F+LMQPP+P++W+Y SD+IKAARQSADDI
Sbjct: 656 GLACIPIVAFHFSHVLSAKRSLVLVVATGCMFILMQPPMPMTWSYHSDMIKAARQSADDI 715
Query: 721 SIYGFMASKPTWPSWXXXXXXXXXXXXXXXXXPIKYIVELRAFYSIVMGIALGIYISAEF 780
SIYGFMASKPTWPSW PIKY+VELRAFYSI MG+ALG+YISAEF
Sbjct: 716 SIYGFMASKPTWPSWLLIVSLLLILAAATSLIPIKYVVELRAFYSIAMGLALGVYISAEF 775
Query: 781 FLQATVLHALIXXXXXXXXXXXXXXHFPSASSTKLLPWIFALLVALFPVTYLLEGQVRIK 840
FLQA VLHALI HFPSASSTKLLPW+FALLVALFPVTYLLEGQVRIK
Sbjct: 776 FLQAAVLHALIVVTLVCASVFVIFTHFPSASSTKLLPWVFALLVALFPVTYLLEGQVRIK 835
Query: 841 SILGDN-GFG-DFEEEDRKLTTLLAVEGARTSLLGLYAAIFMLIALEIKFELASLMREKA 898
+ L +N +G D EED+K+TT+LA+EGARTSLLGLYAAIFMLIAL IKFEL SL+REK
Sbjct: 836 NDLNENVTWGWDTREEDKKVTTMLAIEGARTSLLGLYAAIFMLIALLIKFELTSLLREKF 895
Query: 899 VERGGIRHXXXXXXXXXXXFPPRMRFMQQRRASTVPTFSIKRMAAEGA-WMPAVGNVATI 957
ER G FP RMR MQQRRA+++ +F++++M+ EGA WMP+VGNVATI
Sbjct: 896 SERSG---QSKTQGGARGIFPTRMRLMQQRRATSIQSFAVEKMSEEGAAWMPSVGNVATI 952
Query: 958 MCFAICLILNVNLTGGSNQXXXXXXXXXXXXNQDSDFVAGFGDKQRYFPVTVAXXXXXXX 1017
MCFAICLILN++L+GGS+Q NQDSD ++GFGDKQRYFPVTVA
Sbjct: 953 MCFAICLILNIHLSGGSSQAIFFLAPILLLLNQDSDLLSGFGDKQRYFPVTVAISTYLAL 1012
Query: 1018 XXXXXXWQDVWHG-NAGWGLEVGGPDWFFAVKNLALLILTFPSHIVFNRFVWSYT-KQTD 1075
W++VW G N GWG+E+GG +WFFAVKNLALLILT P HI+FNR+VWSYT K TD
Sbjct: 1013 SSLYTVWEEVWFGGNTGWGVEIGGREWFFAVKNLALLILTAPGHIIFNRYVWSYTTKHTD 1072
Query: 1076 XXXXXXXXXXXXXXXXXDVIQVKVLGLLGIIYSLAQYIISRQQYISGLKYI 1126
DV QV+VLG+LGI+YS AQY+ISRQQY+ GL+YI
Sbjct: 1073 ASPMLTVPLSFAAVIITDVFQVRVLGVLGIVYSAAQYVISRQQYMKGLRYI 1123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.140 0.440 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1126 933 0.00092 122 3 11 22 0.42 33
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 632 (67 KB)
Total size of DFA: 453 KB (2211 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 64.40u 0.12s 64.52t Elapsed: 00:00:13
Total cpu time: 64.40u 0.12s 64.52t Elapsed: 00:00:15
Start: Tue May 21 09:01:24 2013 End: Tue May 21 09:01:39 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00006219001 | SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (1121 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00021462001 | • | • | 0.502 | ||||||||
| GSVIVG00021809001 | • | 0.406 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1126 | |||
| TIGR01666 | 704 | YCCS hypothetical membrane protein, TIGR01666. Thi | 81.91 |
| >TIGR01666 YCCS hypothetical membrane protein, TIGR01666 | Back alignment and domain information |
|---|
Probab=81.91 E-value=3 Score=52.80 Aligned_cols=77 Identities=26% Similarity=0.215 Sum_probs=68.0
Q ss_pred cCCCCchhHHHHHHHHhHHHHHHhhCCchHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccc
Q 001195 62 SPSSFAHNARIAIALVPCAAFLLDLGGSPVVTTITLGLMLAYIIDSLNFKSGSFFGVWFSLIASQIAFFFSSSLFVT 138 (1126)
Q Consensus 62 ~~~sf~hN~RIa~aL~P~l~~ll~~GG~~~l~~Lt~Glmv~YilD~l~~~~ga~~~iW~tl~~a~la~~~s~~~~~~ 138 (1126)
...+|.|+-||.+++.+++++...+|=......+++|++.+-+.|.-+-.+|=+-.+-.|++|+.++.+....++-.
T Consensus 4 ~~~~~~~~lri~ia~~~~~~~~~~~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~ 80 (704)
T TIGR01666 4 LNAKVIYTIPIFIALNGAAVGIWFFDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGK 80 (704)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34679999999999999999999999888889999999999999999999999999999999998888877654433
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This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1126 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-05
Identities = 82/528 (15%), Positives = 138/528 (26%), Gaps = 193/528 (36%)
Query: 232 SFKSKQEVKYHGGEIPDDNLILSTLESCMHTLN---------LLFSPLLFHIASHYSVVF 282
+F + K + D + + E H + LF LL
Sbjct: 28 AFVDNFDCKD----VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 283 SSAASICDLFLLFFI------PFL-FQLYASTRGALWWVTRNENQLHSIRVVNGALALIV 335
I FL+ I P + ++Y R L+ N+NQ+ + V+ +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSRLQPYLK 139
Query: 336 VVICL-EIRVVFHSFGKYIQVPPPVNYLLVTTTMLGGATGAGAYALGMISDASSSVAFTA 394
+ L E+R P +L+ G G+G T
Sbjct: 140 LRQALLELR--------------PAKNVLID-----GVLGSGK---------------TW 165
Query: 395 LAVVVSAAAAIVVGFP-----------------------LVFIAVPSI------------ 419
+A+ V + + L++ P+
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 420 ----AGFYLARFFTKKSLPSYFAFVSLSSMMVIWFVMHNFWDLNIWLAGMSLKTF---CK 472
L R K + L V+ N + W F CK
Sbjct: 226 RIHSIQAELRRLLKSKPYEN-----CL-------LVLLNVQNAKAW------NAFNLSCK 267
Query: 473 LI-------VADVVLAMAVP---------------GLALLPSKLHFMT----EVALISHA 506
++ V D + A +LL L L ++
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 507 LLLCYI-------ENRFFNYSSIYYYGLEDDIMYPSYMVILTTFVGLALVRRLSVDNRIG 559
L I + N+ + L I+ S V L A R++ +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNV-LEP----AEYRKMFDRLSVF 381
Query: 560 PKAVWILTCLYSSKLAVLFITSKSVVW-------VSAILLLAVSPPLLLYKDKSRTAS-- 610
P + I +L S++W V ++ L+ + K T S
Sbjct: 382 PPSAHI-------PTILL-----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 611 ------KMKAWQGYA-HASVVALAVWFCRETIFEALQWWNGRPPS-DG 650
K+K YA H S+V I + + PP D
Sbjct: 430 SIYLELKVKLENEYALHRSIVD------HYNIPKTFDSDDLIPPYLDQ 471
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00