Citrus Sinensis ID: 001196
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1125 | 2.2.26 [Sep-21-2011] | |||||||
| Q498H0 | 1448 | Sister chromatid cohesion | N/A | no | 0.370 | 0.287 | 0.237 | 1e-22 | |
| Q5F3U9 | 1412 | Sister chromatid cohesion | yes | no | 0.368 | 0.293 | 0.246 | 2e-22 | |
| Q5U241 | 1464 | Sister chromatid cohesion | N/A | no | 0.369 | 0.284 | 0.236 | 3e-22 | |
| Q9NTI5 | 1447 | Sister chromatid cohesion | yes | no | 0.368 | 0.286 | 0.244 | 6e-22 | |
| Q4VA53 | 1446 | Sister chromatid cohesion | yes | no | 0.368 | 0.286 | 0.242 | 1e-21 | |
| Q6TRW4 | 1447 | Sister chromatid cohesion | yes | no | 0.368 | 0.286 | 0.242 | 2e-21 | |
| A1L1F4 | 1320 | Sister chromatid cohesion | no | no | 0.398 | 0.339 | 0.235 | 4e-19 | |
| Q29RF7 | 1337 | Sister chromatid cohesion | no | no | 0.368 | 0.310 | 0.235 | 5e-19 | |
| A4L9P7 | 1333 | Sister chromatid cohesion | no | no | 0.368 | 0.311 | 0.233 | 9e-19 | |
| Q5F3V3 | 1330 | Sister chromatid cohesion | no | no | 0.368 | 0.311 | 0.235 | 2e-18 |
| >sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 | Back alignment and function desciption |
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Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/447 (23%), Positives = 209/447 (46%), Gaps = 30/447 (6%)
Query: 70 QFMQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127
Q +++ +++L +L+ P+ E E L+ LK ++E + E L + G I E
Sbjct: 644 QAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDF 703
Query: 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLE--EKTH 185
S++ +L++ +G RQAKY++H + AI + + +++ L L+
Sbjct: 704 PHIRSALLPVLQQKAKKGPPRQAKYSIHCIQAIFSSKETQ-FAQIFEPLHKSLDPGNPEQ 762
Query: 186 LPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELC 241
L L S+G IAQ A F +S + F+ +L T W D+ S
Sbjct: 763 LITSLVSIGHIAQLAPDQFTAPLKSMVATFVVKDLLMTDRLPGKKTTKLWVSDDEVSTET 822
Query: 242 LLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLAS 301
+KI IK +V+ L +K+ + G L ++ + + G+++E + S D + LRLA+
Sbjct: 823 KVKIQAIKMMVRWLLGMKNNLSKSGNSTLRLLMAILHTDGDLTEHGKLSKPDMSRLRLAA 882
Query: 302 AKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA-- 357
A A+++L+++ + I ++ + L Q ++LF K+H+ + L +Y
Sbjct: 883 ASAIVKLAQEPCYHEIITLEQYQLCALVINDECYQVRQLFAQKIHKGLSRLRLPLEYMAI 942
Query: 358 CAFLFGITESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYL 414
CA +K P E +Q L I + + + +V F+ PEY++PY
Sbjct: 943 CALC-----AKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKL--FSLLPEYVVPYT 995
Query: 415 VHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFR 474
VH AH PD + +D++ + + L+F++ +L+ K+E+ ++ I ++ +
Sbjct: 996 VHLLAHD--PDYVKVQDIEQLKDIKECLWFVLEILMSKNEN-----NSHAFIRKMVEYIK 1048
Query: 475 SIKCSEDIVDAAKSKNSHAICDLGLSI 501
K ++ D ++ + +CD+ ++I
Sbjct: 1049 QTKDGQNPDDQKMNEKMYTVCDVAMNI 1075
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Plays a role in androgen-induced proliferative arrest (By similarity). Required for maintenance of sister chromatid cohesion during mitosis. Xenopus laevis (taxid: 8355) |
| >sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 | Back alignment and function description |
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| >sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 | Back alignment and function description |
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| >sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1125 | ||||||
| 147777785 | 1922 | hypothetical protein VITISV_030148 [Viti | 0.943 | 0.552 | 0.604 | 0.0 | |
| 255585406 | 1735 | androgen induced inhibitor of proliferat | 0.930 | 0.603 | 0.578 | 0.0 | |
| 356522079 | 1641 | PREDICTED: sister chromatid cohesion pro | 0.942 | 0.645 | 0.587 | 0.0 | |
| 356564452 | 1642 | PREDICTED: sister chromatid cohesion pro | 0.943 | 0.646 | 0.577 | 0.0 | |
| 224139450 | 1417 | predicted protein [Populus trichocarpa] | 0.745 | 0.592 | 0.671 | 0.0 | |
| 356557993 | 1656 | PREDICTED: sister chromatid cohesion pro | 0.945 | 0.642 | 0.566 | 0.0 | |
| 356532370 | 1648 | PREDICTED: sister chromatid cohesion pro | 0.941 | 0.642 | 0.562 | 0.0 | |
| 449443672 | 1692 | PREDICTED: sister chromatid cohesion pro | 0.824 | 0.548 | 0.607 | 0.0 | |
| 357448065 | 1683 | Sister chromatid cohesion protein PDS5-l | 0.943 | 0.630 | 0.531 | 0.0 | |
| 186530158 | 1607 | sister chromatid cohesion protein PDS5 [ | 0.905 | 0.634 | 0.523 | 0.0 |
| >gi|147777785|emb|CAN75734.1| hypothetical protein VITISV_030148 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/1124 (60%), Positives = 834/1124 (74%), Gaps = 63/1124 (5%)
Query: 19 QDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDI 78
+DDLL+ILG KHRLYDFL TLS+KCSYLLFNKEHVKE LLE A QKSS N Q++QSCM++
Sbjct: 630 RDDLLRILGEKHRLYDFLGTLSLKCSYLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNV 689
Query: 79 LGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLL 138
L +LARFSPLLL G EE+LV+LLK++NEIIKEG+LH+LAKAGGTIREQLA TSSSVDL+L
Sbjct: 690 LVVLARFSPLLLSGAEEDLVHLLKDDNEIIKEGVLHILAKAGGTIREQLAVTSSSVDLIL 749
Query: 139 ERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQ 198
ERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDML++KTHLPAVLQSLGCIAQ
Sbjct: 750 ERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQ 809
Query: 199 TAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPV 258
TAMPVFETRESEIE FIK +IL+CS+ I+GIKT+VKSYLPV
Sbjct: 810 TAMPVFETRESEIEGFIKCEILKCSS--------------------IFGIKTMVKSYLPV 849
Query: 259 KDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPV 318
KDAH+R GIDDLL ILK++L +GE+S+DIESS+VDKAHLRLA+AKA+LRL+R WDHKIPV
Sbjct: 850 KDAHLRLGIDDLLEILKNILLFGEISKDIESSAVDKAHLRLAAAKAILRLARHWDHKIPV 909
Query: 319 DVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQN 378
VFHLTLRT E SFPQAKKLFLSKVHQY+KDRLLDAKYACAF F I S+ EFEE+K N
Sbjct: 910 GVFHLTLRTSESSFPQAKKLFLSKVHQYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHN 969
Query: 379 LADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELV 438
L DIIQM+HQ KARQ+S QSDA+S A YPE+I+PYLVH AHHSCPDIDECKDVKAFE +
Sbjct: 970 LGDIIQMYHQAKARQLSTQSDASSLA-YPEFILPYLVHALAHHSCPDIDECKDVKAFEPI 1028
Query: 439 YCRLYFIVSMLIHKDEDVKSEAS---NKESISVIISIFRSIKCSEDIVDAAKSKNSHAIC 495
Y +L+ +SML+H DED K+EA KE IS IISIF+SIK SEDIVDAAKSKNSHA+C
Sbjct: 1029 YWKLHIFLSMLVHGDEDTKAEAGADKEKEGISAIISIFQSIKLSEDIVDAAKSKNSHALC 1088
Query: 496 DLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHF 555
DLGLSI KRL + +D+ QG+ SS++LP LYK EKKEGDDS+ASE QTWLADE VLTHF
Sbjct: 1089 DLGLSIIKRLVQKQDDVQGLTSSITLPPILYKLCEKKEGDDSVASEGQTWLADEXVLTHF 1148
Query: 556 ESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEV 615
ESLKLET+ +V E ++B ++DGNE+PLGKMI++LKS+G K K K KKSSPA+
Sbjct: 1149 ESLKLETNGMVDEE----GVINBNDRDGNELPLGKMIKRLKSRGTKSRKVKNKKSSPAKK 1204
Query: 616 KGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTS 675
K ENDVDIL+MVREIN D +G+ +KFESSNGH++ ++ K+ ++E+ K+R++T+VT
Sbjct: 1205 KHAENDVDILKMVREINFDAMGMSSKFESSNGHEYSSHRKSKMGQKHEKKKRRRSTEVTP 1264
Query: 676 FPVPKRRRSLSAHGGFRTPKSNSKAPLRASGGGSHHAGVSSFQSIDMDDDI-SESEVKIS 734
VPKRRRS SA P+S SK +RA H AGVSSFQS DMD ++ ++SE K+S
Sbjct: 1265 VTVPKRRRSSSAKSSL--PRSASKGSVRALRDNLHQAGVSSFQSTDMDSEVHTDSEDKVS 1322
Query: 735 TKKKKFTSNESDSFASRFQGSRSFSSKRKGKSADLGHDNEADEVGEADEGDLKNSDMLS- 793
K ESD S F+ + +F SKRKGK +D G ++EA VGE + DL+ ++
Sbjct: 1323 ALKNIGEPAESDLLVSCFRRNSNFLSKRKGKGSDKGDNDEARIVGEDXDHDLRKPNVPME 1382
Query: 794 ----------KSPVGSAKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYE 843
KSP GS KKRKRRSIAGLAK T+K + DLI RIKVWWPMDKQFYE
Sbjct: 1383 TDKIHTASNVKSPTGSTKKRKRRSIAGLAKSTSKEGRSHAADLIDCRIKVWWPMDKQFYE 1442
Query: 844 GTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSKSNSLKHASLIQVSS 903
G +KSYDP +KHV+LYDD DVEVLRL +ERWEL++N KP K K NS K VS+
Sbjct: 1443 GXVKSYDPKARKHVVLYDDGDVEVLRLARERWELVENVAKPAK--KLNSSKTPPSKGVSA 1500
Query: 904 GKKNKLSGGARQNKKSMKD-----KGKRTPKKSLKDRPKFA----SKSYFSEDEDSEKTD 954
+KNK G++QNKK +K +GKRTP+K+LK K + + F E E +D
Sbjct: 1501 DQKNKFLNGSQQNKKPIKSSSSKVRGKRTPRKNLKHVEKAGLESNTATEFCEVESRGSSD 1560
Query: 955 VSDPKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNG 1014
VS+P+P +SKV + NSGDS+ K + ++ LT EESDKE K +SE + VED E +
Sbjct: 1561 VSNPEPNAMSKVEDMNSGDSEEKLNERSEKGLTGGEESDKEEKSVSEGKQVEDKEKRPSD 1620
Query: 1015 EDESDEVDKMDSEEKPAEEVGSVPQDEK---------SDEEDKEEAESSKGSREEANEDG 1065
+ES++ +K SE +P E+ + QD + S+E + EE++ S EEAN++
Sbjct: 1621 TEESEKEEKPYSEGRPVEDKEGICQDAQESPEKKESYSEEREPEESKRDSPSGEEANKEE 1680
Query: 1066 KSDSEGNEEINGDGSSPMNPEKSQNELPKPVDADDAEISDDEPL 1109
+SDSE + N + S+P + +KS + P + +DA+ SDDEPL
Sbjct: 1681 QSDSEETQAENLE-SNPTDXDKSSKKTSDPSNTEDAKNSDDEPL 1723
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585406|ref|XP_002533398.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223526757|gb|EEF28984.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356522079|ref|XP_003529677.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356564452|ref|XP_003550468.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224139450|ref|XP_002323118.1| predicted protein [Populus trichocarpa] gi|222867748|gb|EEF04879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356557993|ref|XP_003547294.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532370|ref|XP_003534746.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443672|ref|XP_004139601.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357448065|ref|XP_003594308.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula] gi|124359430|gb|ABN05881.1| HEAT [Medicago truncatula] gi|355483356|gb|AES64559.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|186530158|ref|NP_001119390.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332008170|gb|AED95553.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1125 | ||||||
| TAIR|locus:2169058 | 1607 | AT5G47690 [Arabidopsis thalian | 0.609 | 0.426 | 0.583 | 2.5e-254 | |
| UNIPROTKB|F1N7G8 | 1449 | PDS5B "Uncharacterized protein | 0.341 | 0.265 | 0.228 | 5.3e-20 | |
| ZFIN|ZDB-GENE-091217-2 | 1415 | pds5b "PDS5, regulator of cohe | 0.338 | 0.269 | 0.234 | 8.5e-20 | |
| UNIPROTKB|Q5F3U9 | 1412 | PDS5B "Sister chromatid cohesi | 0.341 | 0.271 | 0.228 | 1e-19 | |
| UNIPROTKB|F1P3B8 | 1446 | PDS5B "Sister chromatid cohesi | 0.341 | 0.265 | 0.228 | 1.4e-19 | |
| TAIR|locus:2025712 | 774 | AT1G80810 [Arabidopsis thalian | 0.180 | 0.262 | 0.356 | 1.8e-19 | |
| UNIPROTKB|Q5U241 | 1464 | pds5b-b "Sister chromatid cohe | 0.339 | 0.260 | 0.235 | 3e-19 | |
| UNIPROTKB|Q498H0 | 1448 | pds5b-a "Sister chromatid cohe | 0.339 | 0.263 | 0.237 | 7.6e-19 | |
| MGI|MGI:2140945 | 1446 | Pds5b "PDS5, regulator of cohe | 0.341 | 0.265 | 0.223 | 1e-18 | |
| UNIPROTKB|F1Q0Z0 | 1447 | PDS5B "Uncharacterized protein | 0.341 | 0.265 | 0.226 | 2.6e-18 |
| TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2021 (716.5 bits), Expect = 2.5e-254, Sum P(2) = 2.5e-254
Identities = 403/691 (58%), Positives = 499/691 (72%)
Query: 18 LQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMD 77
++DD+LKIL KH LYDFLSTLS+KCSYLLF+KE+VKEIL EV+ +KSS N +Q CMD
Sbjct: 574 IRDDMLKILSEKHSLYDFLSTLSIKCSYLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMD 633
Query: 78 ILGILARFSPLLLGGTXXXXXXXXXXXXXIIKEGILHVLAKAGGTIREQLAATSSSVDLL 137
LG+LA F P L G ++KEG L +LAKAGGTIRE L +SSVDLL
Sbjct: 634 FLGLLACFCPSLFDGAEEELISFLKDDDEMMKEGTLKILAKAGGTIRENLIVLASSVDLL 693
Query: 138 LERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIA 197
LER+C+EG+R+QAKYAVHALA+ITKDDGLKSLSVLYKRLVDMLE+K + PAVLQ LGCIA
Sbjct: 694 LERICVEGNRKQAKYAVHALASITKDDGLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIA 753
Query: 198 QTAMPVFETRXXXXXXXXXXXXLRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLP 257
Q AMPV+ETR L+ ++ +D K WDD+SE+C LKIYGIKTLVKSYLP
Sbjct: 754 QIAMPVYETRESEVVEFIRSKILKLKSETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLP 813
Query: 258 VKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIP 317
KDA +R G+DDLLGILK++LS+GE+SED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP
Sbjct: 814 FKDAQLRAGVDDLLGILKNILSFGEVSEDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIP 873
Query: 318 VDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQ 377
+++FHLTL+TPEI FP AKK+FL KVHQYVKDR+L+ KYAC+FLF IT S E EE+K
Sbjct: 874 IEIFHLTLKTPEIPFPTAKKIFLGKVHQYVKDRVLEMKYACSFLFDITGSNVLESEEDKH 933
Query: 378 NLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFEL 437
NLADIIQ +Q K R+IS Q+DANS YP +I+PYLVH AHHSCPD+++CKDVK +E+
Sbjct: 934 NLADIIQHSYQTKVRKISAQTDANSVTLYPHHILPYLVHALAHHSCPDVEKCKDVKEYEM 993
Query: 438 VYCRLYFIVSMLIHKDEDVKSEASNKEXXX--XXXXXXXXXKCSEDIVDAAKSKNSHAIC 495
+Y +LY I+SML+HK+ED K+E +KE K SED+ DA KSKNSHAIC
Sbjct: 994 IYRQLYLIISMLLHKEEDGKTEDIDKEREYVPTIILIFHSIKQSEDVTDATKSKNSHAIC 1053
Query: 496 DLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHF 555
+LGLSI L++ E + QG + VSLP TLYKP EK EGD S E + WLADE+VL HF
Sbjct: 1054 ELGLSIINHLTQKEPDLQGEITPVSLPPTLYKPSEKVEGDKSQVGEEKLWLADETVLLHF 1113
Query: 556 ESLKLETHE--VVGSEIARHEALDDLEKDGNEVPLGKMIXXXXXXXXXXXXXXXXXXXXX 613
+LKLE+H V + + +E + D E DGNE+PLGK++
Sbjct: 1114 RALKLESHADASVIPQTSENEVMIDGESDGNEIPLGKIVERLRAQGTKTRKGKKNKSVPA 1173
Query: 614 EVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDV 673
E + +NDVD+L+MVREINLD+L +L+KFESSNGHKH PS++ ++ +++ KR D
Sbjct: 1174 EDENGKNDVDVLKMVREINLDHLQMLDKFESSNGHKHSPSERAEICQRDQKGNKRNVGDA 1233
Query: 674 TSF-PVPKRRRSLSAHGGFRTPKSNSKAPLR 703
TS VPKRRRS S H ++ S K L+
Sbjct: 1234 TSVVSVPKRRRSSSGHSPYKFSNSGPKVQLK 1264
|
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| UNIPROTKB|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-091217-2 pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| TAIR|locus:2025712 AT1G80810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5U241 pds5b-b "Sister chromatid cohesion protein PDS5 homolog B-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q498H0 pds5b-a "Sister chromatid cohesion protein PDS5 homolog B-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| MGI|MGI:2140945 Pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1Q0Z0 PDS5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.XVI.584.1 | hypothetical protein (1417 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1125 | |||
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 1e-05 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 3e-05 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 1e-04 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 1e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 2e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 2e-04 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 4e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 4e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 6e-04 | |
| TIGR01651 | 600 | TIGR01651, CobT, cobaltochelatase, CobT subunit | 6e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 8e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 0.001 | |
| PLN02976 | 1713 | PLN02976, PLN02976, amine oxidase | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.002 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 0.004 | |
| COG5406 | 1001 | COG5406, COG5406, Nucleosome binding factor SPN, S | 0.004 |
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 18/151 (11%)
Query: 958 PKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDE 1017
P P T SG A+ E+ +E + +E +
Sbjct: 46 PAPPA-----PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSG----SG 96
Query: 1018 SDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEING 1077
S+ V + E + ++ E+ +S E
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE--- 153
Query: 1078 DGSSPMNPEKSQNELPKPVDADDAEISDDEP 1108
+ S N+ P E S +EP
Sbjct: 154 ------SHNPSPNQQPSSFLQPSHEDSPEEP 178
|
Length = 413 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|215527 PLN02976, PLN02976, amine oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1125 | |||
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 100.0 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 99.1 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 98.98 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.35 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 97.24 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.14 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.14 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 97.05 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 97.03 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.65 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.54 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 95.74 | |
| KOG4675 | 273 | consensus Uncharacterized conserved protein, conta | 95.72 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 95.5 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 95.37 | |
| PF09038 | 122 | 53-BP1_Tudor: Tumour suppressor p53-binding protei | 95.13 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 94.75 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 94.59 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.44 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 93.59 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 93.41 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 93.3 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 92.37 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 91.65 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 90.15 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 89.18 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 86.64 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 86.24 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 86.13 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 85.07 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 84.88 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 84.78 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 84.71 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 84.59 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 84.5 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 84.43 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 84.02 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.93 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 83.79 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 82.87 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 82.08 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 81.94 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 81.67 |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=428.32 Aligned_cols=515 Identities=19% Similarity=0.269 Sum_probs=407.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHhcccccCH-HHHHHHHHHHHhccC-------c--chhhhHHHHHHHHHHHHhhC
Q 001196 17 VLQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------S--ANAQFMQSCMDILGILARFS 86 (1125)
Q Consensus 17 ~ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNk-ShV~~LL~~vs~~~s-------~--~~~~~~~~AleLL~~IS~~~ 86 (1125)
.+-.+|.++++.++++..+.+.|+.|..++.+.. +.+..++........ . -..+....+..||..++.++
T Consensus 571 ~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~ 650 (1266)
T KOG1525|consen 571 EILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIH 650 (1266)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcC
Confidence 3445666666667789999999999999988888 777777774332111 0 12355677889999999999
Q ss_pred CcCccccH--HHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001196 87 PLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 164 (1125)
Q Consensus 87 P~LFk~~v--~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~ 164 (1125)
|.+|.... ..++..+....+.+.+.+|+.+-..|+.+....+.....+...+..+++.|+|.|||+|++|+.++...+
T Consensus 651 ~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 651 PDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred cchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 99998874 6666666666767788999999988855554455677889999999999999999999999999887764
Q ss_pred ccchHHHHHHHHHHhhhcC----C-CCchHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCC-CCCCCCCC
Q 001196 165 GLKSLSVLYKRLVDMLEEK----T-HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRND-TKACWDDR 237 (1125)
Q Consensus 165 ~~~~ls~L~e~Lv~~Le~~----s-~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~-~~~eW~~~ 237 (1125)
.. .+.+++..+.+.|... . ++.+++.+||+|+.+.|..|.+. ...+..||+|++++.+..+++. ....|+++
T Consensus 731 ~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~e~~~~~~~~P~ 809 (1266)
T KOG1525|consen 731 FC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPGEKNKSKEWLPS 809 (1266)
T ss_pred hh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccccccCccccCCc
Confidence 31 2344455555554433 3 99999999999999999777765 8899999999999888888765 66889873
Q ss_pred ----cHHHHHHHHHHHHHHHhhcCCccccccc--chHHHHHHHHHhh-hcCCCcCCcCCChhhHhhHHHHHHHHHHhhhc
Q 001196 238 ----SELCLLKIYGIKTLVKSYLPVKDAHIRP--GIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASAKAVLRLSR 310 (1125)
Q Consensus 238 ----Se~~~aKI~ALK~LvN~Lla~~~~~~~~--~~~~llkLL~~ll-~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr 310 (1125)
+..+.+|+++++++++||++.+.+.-+. .+...+++|..++ +.|++..+..+|..++++||+.|++++||||.
T Consensus 810 ~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~ilKl~~ 889 (1266)
T KOG1525|consen 810 DKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITILKLAS 889 (1266)
T ss_pred ccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhheeeeccc
Confidence 5679999999999999999998643222 1222567888887 79999998889999999999999999999998
Q ss_pred c--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHH
Q 001196 311 Q--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQ 388 (1125)
Q Consensus 311 ~--~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~alffL~A~e~~epe~~~~K~~L~~~I~~~~~ 388 (1125)
. |..+|++++|..++++++|++++||..|+.||++++...+||+-||++|+|++.++.....+............+ +
T Consensus 890 ~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~~~~~~~~~t~~~~~~-r 968 (1266)
T KOG1525|consen 890 EKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKELLANKREEETKNSASR-R 968 (1266)
T ss_pred ccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhhhhHHHHhhhhcchhh-h
Confidence 6 699999999999999999999999999999999999999999999999999987653333333333322222111 1
Q ss_pred HHHhhhccccccccccccchhhHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHHHHHHHHhhccCccccccccccchHHH
Q 001196 389 MKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISV 468 (1125)
Q Consensus 389 sr~R~~s~~s~~~~~~~~pEyvLpyLIHLLAHH~~Pdf~~~~d~~al~~~~~yL~FyLe~La~~~e~~~~~~~~~eNiSl 468 (1125)
.+........+. .+.+.|||+.+|.+|+|||| |+|...+|+..|..+..++||.++.|..++++ .-..+
T Consensus 969 ~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~~n--------~~~~~ 1037 (1266)
T KOG1525|consen 969 EQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEENEN--------NQHKF 1037 (1266)
T ss_pred hhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhhcc--------chhHH
Confidence 222222222121 25688999999999999999 99999999999999999999999999987422 22345
Q ss_pred HHHHHHHhhcccCccccc---CCcchHHHHHHHHHHHHHHh-ccCCCCCccccccCCCccccCCCCCCCCcccccccccc
Q 001196 469 IISIFRSIKCSEDIVDAA---KSKNSHAICDLGLSITKRLS-RMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQT 544 (1125)
Q Consensus 469 Ly~La~rIKq~rDavd~e---~S~nLy~LcDLAq~IIk~~a-qk~W~LqtyPGkV~LPs~LF~p~~s~e~~ea~~v~~K~ 544 (1125)
.-.+.+.+++.+|...+. .+..||+|||+|+.|+.... ..+|+..+|||++.||..+|.+..+ ....+.++
T Consensus 1038 ~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~~-----kn~~~~k~ 1112 (1266)
T KOG1525|consen 1038 WKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPKD-----KNFINNKI 1112 (1266)
T ss_pred HHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcch-----hhhccccc
Confidence 556667788888877443 47899999999999999888 6899999999999999999999864 23678999
Q ss_pred ccCch
Q 001196 545 WLADE 549 (1125)
Q Consensus 545 YLpde 549 (1125)
|||++
T Consensus 1113 ~i~e~ 1117 (1266)
T KOG1525|consen 1113 YIPEE 1117 (1266)
T ss_pred cCCch
Confidence 99999
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 3e-15
Identities = 81/617 (13%), Positives = 183/617 (29%), Gaps = 175/617 (28%)
Query: 16 PVLQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLE-------------VAA 62
V +D + K + D ++ +KE + I++ + +
Sbjct: 23 SVFEDAFVDNFDCKD-VQDMPKSI--------LSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 63 QKSSANAQFMQSCM--DILGILARFS-----PLLLGGTEEELVNLLKEENEIIKEGILHV 115
++ +F++ + + +++ P ++ E + L +N++ + +V
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNV 131
Query: 116 LAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVH--------ALAAIT-KDDGL 166
R Q L R L R + +A +
Sbjct: 132 -------SRLQP------YLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 167 KS--------LSVLYKR----LVDMLEE-KTHLPAVLQSLGCIAQTAMPVFETRESEIEE 213
+ L++ +++ML++ + S + + ++E+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 214 FIKSK-------ILRCSNKIRNDTKACWDDRSELCLLKIYGI--KTLVKS-YLPVKDA-- 261
+KSK +L + + + + + K L+ + + V D
Sbjct: 237 LLKSKPYENCLLVLL-------NV---QNAK----AWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 262 ----------HIRPGI--DDLLGILKSMLSYGEMSEDIESSSVDKAH-LRLASAKAVLR- 307
H + D++ +L L Y + V + RL+ +R
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 308 -LSR--QWDH------KIPVDVFHLTLRTPEIS--------FPQ-----AKKL------- 338
L+ W H ++ L E FP L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 339 -------FLSKVHQYVKDRLLDAKYACAFLFGITESKSPE-FEEEKQNLADIIQMHHQM- 389
++K+H+Y L++ K I P + E K L + +H +
Sbjct: 400 IKSDVMVVVNKLHKY---SLVE-KQPKESTISI-----PSIYLELKVKLENEYALHRSIV 450
Query: 390 KARQISVQSDANSFATYPE--YIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVS 447
I D++ Y ++ HH +I+ + + F +V+ F+
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHI----GHH-LKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 448 MLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE----DIVDAAKSKNSHAICDLGL 499
+ H + S ++ + I + E I+D + IC
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 500 SITKRLSRMEDNSQGVF 516
+ R++ M ++ +F
Sbjct: 566 DLL-RIALMAEDE-AIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1125 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.81 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 97.75 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 97.67 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.53 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.47 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.35 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.15 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.01 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 96.97 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 96.91 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 96.86 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 96.85 | |
| 2equ_A | 74 | PHD finger protein 20-like 1; tudor domain, struct | 96.76 | |
| 1mhn_A | 59 | SurviVal motor neuron protein; SMN, SMA, spinal mu | 96.73 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 96.72 | |
| 2l8d_A | 66 | Lamin-B receptor; DNA binding protein; NMR {Gallus | 96.71 | |
| 3p8d_A | 67 | Medulloblastoma antigen MU-MB-50.72; tudor domain, | 96.66 | |
| 2dig_A | 68 | Lamin-B receptor; tudor domain, integral nuclear e | 96.64 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 96.63 | |
| 4a4f_A | 64 | SurviVal of motor neuron-related-splicing factor; | 96.56 | |
| 2g3r_A | 123 | Tumor suppressor P53-binding protein 1; tandem tud | 96.5 | |
| 3s6w_A | 54 | Tudor domain-containing protein 3; methylated argi | 96.49 | |
| 3qii_A | 85 | PHD finger protein 20; tudor domain, structural ge | 96.43 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 96.41 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 96.29 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 96.28 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 96.26 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 96.18 | |
| 1g5v_A | 88 | SurviVal motor neuron protein 1; mRNA processing, | 96.11 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 96.11 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 96.09 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 95.98 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.96 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 95.85 | |
| 2ldm_A | 81 | Uncharacterized protein; PHF20, tudor domain, epig | 94.82 | |
| 2d9t_A | 78 | Tudor domain-containing protein 3; structural geno | 95.79 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 95.66 | |
| 2eqj_A | 66 | Metal-response element-binding transcription facto | 95.55 | |
| 1ssf_A | 156 | Transformation related protein 53 binding protein | 95.41 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.34 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 95.34 | |
| 3pnw_C | 77 | Tudor domain-containing protein 3; FAB, structural | 95.22 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 95.06 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 94.95 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 94.59 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 94.41 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 94.26 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 94.03 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 93.96 | |
| 4hcz_A | 58 | PHD finger protein 1; protein-peptide complex, tud | 93.89 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 93.68 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 93.54 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 93.51 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 93.33 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 93.32 | |
| 3fdr_A | 94 | Tudor and KH domain-containing protein; TDRD2, str | 93.28 | |
| 2eqk_A | 85 | Tudor domain-containing protein 4; structural geno | 92.56 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 92.25 | |
| 2diq_A | 110 | Tudor and KH domain-containing protein; tudor doma | 92.1 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 91.8 | |
| 2xk0_A | 69 | Polycomb protein PCL; transcription, aromatic CAGE | 91.49 | |
| 2m0o_A | 79 | PHD finger protein 1; tudor domain, H3K36ME3 bindi | 91.28 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 91.22 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 91.14 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 90.67 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 90.22 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 90.21 | |
| 2wac_A | 218 | CG7008-PA; unknown function, tudor, beta-barrel, n | 88.69 | |
| 2e5p_A | 68 | Protein PHF1, PHD finger protein 1; tudor domain, | 88.01 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 87.35 | |
| 2e5q_A | 63 | PHD finger protein 19; tudor domain, isoform B, st | 86.82 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 86.72 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 86.42 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 85.63 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.52 | |
| 3ntk_A | 169 | Maternal protein tudor; tudor domain, OB-fold, GER | 85.16 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 84.98 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 84.97 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 83.78 | |
| 4b9x_A | 226 | TDRD1, tudor domain-containing protein 1; replicat | 83.61 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 82.81 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 81.81 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 80.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 80.09 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.017 Score=74.41 Aligned_cols=235 Identities=15% Similarity=0.117 Sum_probs=133.5
Q ss_pred HHHHHHhccCCc-----HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC-----
Q 001196 20 DDLLKILGAKHR-----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL----- 89 (1125)
Q Consensus 20 ~ELLKRLg~k~~-----l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L----- 89 (1125)
..|++-|.+.++ ....+..|..++ ...+++.|+..+.....+.+......|...|..|+...+.-
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 445555655443 223333333333 33667777765554322333334566778888888877654
Q ss_pred -----ccccHHHHHHHHhh-ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC
Q 001196 90 -----LGGTEEELVNLLKE-ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD 163 (1125)
Q Consensus 90 -----Fk~~v~~L~~lL~d-~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d 163 (1125)
...-+..|...|.+ .+..+...+|.+|..+...+...+.+....+.+.|...-....+..-+.|+.+|..++..
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 22223556666663 556678889999987653333233333344555555544455666667889999877765
Q ss_pred CccchHHHHHHHHHHhhhcC---CCCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHH
Q 001196 164 DGLKSLSVLYKRLVDMLEEK---THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSEL 240 (1125)
Q Consensus 164 ~~~~~ls~L~e~Lv~~Le~~---s~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~ 240 (1125)
.+...+..++..++..|... ..-.+.+.+|+.|+...|..|..+-..|+.++++-+ . +. ++.
T Consensus 206 ~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l-~-d~-------------~~~ 270 (1230)
T 1u6g_C 206 CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC-N-VD-------------DDE 270 (1230)
T ss_dssp C----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHH-S-SC-------------CTT
T ss_pred cCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-c-CC-------------CHH
Confidence 44323344556666655433 244567999999999999999888888998887633 2 10 011
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHh
Q 001196 241 CLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSM 277 (1125)
Q Consensus 241 ~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~l 277 (1125)
.+..++.+|..++..+.. ...+.+..++..|...
T Consensus 271 --vR~~a~~~l~~l~~~~~~-~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 271 --LREYCIQAFESFVRRCPK-EVYPHVSTIINICLKY 304 (1230)
T ss_dssp --THHHHHHHHHHHHHCTTC-CCHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHHChH-HHHHhHHHHHHHHHHH
Confidence 234566666666654443 2334444455554443
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} | Back alignment and structure |
|---|
| >3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* | Back alignment and structure |
|---|
| >2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A | Back alignment and structure |
|---|
| >3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* | Back alignment and structure |
|---|
| >3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
| >3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
| >2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
| >2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
| >3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* | Back alignment and structure |
|---|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
| >4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} | Back alignment and structure |
|---|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1125 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.4 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 96.79 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 96.71 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 96.55 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 96.52 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 96.36 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 96.26 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 95.95 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.83 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 95.77 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 95.14 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 95.13 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 95.02 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 93.65 | |
| d2g3ra1 | 53 | p53-binding protein 1, 53BP1 {Human (Homo sapiens) | 93.31 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 92.97 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 92.81 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 90.55 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 90.44 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 89.26 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 88.8 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 88.66 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 87.93 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 87.46 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 86.69 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 82.06 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0067 Score=73.45 Aligned_cols=309 Identities=17% Similarity=0.131 Sum_probs=160.4
Q ss_pred HHHHHHHHHhccCCc-----HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcc
Q 001196 17 VLQDDLLKILGAKHR-----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLG 91 (1125)
Q Consensus 17 ~ar~ELLKRLg~k~~-----l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk 91 (1125)
.+-+-|++.|..+++ ...++..|..+ +....++.+++.+.....+.+......+...|..+....|....
T Consensus 45 ~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~-----~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~ 119 (1207)
T d1u6gc_ 45 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSK-----VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119 (1207)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh-----CcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccc
Confidence 344556666666554 23334444433 33466777777665443333344445566666666666654433
Q ss_pred cc------HHHHHHHHhh-----ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 001196 92 GT------EEELVNLLKE-----ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAI 160 (1125)
Q Consensus 92 ~~------v~~L~~lL~d-----~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAl 160 (1125)
+. ...++..|.. .+..+..++|.+|..+...+...+.+....+.+.|........+..-|-|+.||..+
T Consensus 120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l 199 (1207)
T d1u6gc_ 120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 199 (1207)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 32 2333333332 344566677887776543332223333344555555545555666668899999877
Q ss_pred cCCCccchHHHHHHHHHHhhhcCC---CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q 001196 161 TKDDGLKSLSVLYKRLVDMLEEKT---HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDR 237 (1125)
Q Consensus 161 s~d~~~~~ls~L~e~Lv~~Le~~s---~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~ 237 (1125)
...-....+..++..++..|.... ...+.+++|+.|++..|..|..+-..|+.++++-+ ... .
T Consensus 200 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~-------------~ 265 (1207)
T d1u6gc_ 200 VMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC-NVD-------------D 265 (1207)
T ss_dssp TTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHH-SSC-------------C
T ss_pred HHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHh-cCc-------------c
Confidence 655333334456777777665442 45678999999999999999988888888887533 111 0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhc--------------------CCC----cCCcCC-Chh
Q 001196 238 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSY--------------------GEM----SEDIES-SSV 292 (1125)
Q Consensus 238 Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~--------------------GEL----~~~~~t-p~~ 292 (1125)
++....=+.++..|+..| .. ...+....++..+...+.+ .+. ....-. ...
T Consensus 266 ~~~r~~al~~l~~l~~~~---~~-~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 341 (1207)
T d1u6gc_ 266 DELREYCIQAFESFVRRC---PK-EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDD 341 (1207)
T ss_dssp TTTHHHHHHHHHHHHHCT---TC-CCHHHHHHHHHHHTTCCCCC------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhC---hh-hhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhh
Confidence 111111122333333333 21 1122222222222111100 000 000000 111
Q ss_pred hHhhHHHHHHHHHHhhhcccCCCCCH---HHHHHHhhcccCCchhHHHHHHHHHHHhHh
Q 001196 293 DKAHLRLASAKAVLRLSRQWDHKIPV---DVFHLTLRTPEISFPQAKKLFLSKVHQYVK 348 (1125)
Q Consensus 293 ~kArLRLaAa~sLLKLAr~~d~~Itp---~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~ 348 (1125)
..-++|-+|+++|-.|+......+.. ..+-.+...+.|....||...+..+...+.
T Consensus 342 ~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~ 400 (1207)
T d1u6gc_ 342 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 400 (1207)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 23468999999998888754333211 122334456789999999998888766554
|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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