Citrus Sinensis ID: 001213
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1122 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M9M4 | 1145 | Cellulose synthase-like p | yes | no | 0.994 | 0.974 | 0.847 | 0.0 | |
| Q9LFL0 | 1145 | Cellulose synthase-like p | no | no | 0.993 | 0.973 | 0.833 | 0.0 | |
| Q9LHZ7 | 1170 | Cellulose synthase-like p | yes | no | 0.971 | 0.931 | 0.811 | 0.0 | |
| A2YU42 | 1170 | Cellulose synthase-like p | N/A | no | 0.971 | 0.931 | 0.811 | 0.0 | |
| Q8W3F9 | 1127 | Cellulose synthase-like p | no | no | 0.959 | 0.954 | 0.754 | 0.0 | |
| A2ZAK8 | 1127 | Cellulose synthase-like p | N/A | no | 0.959 | 0.954 | 0.754 | 0.0 | |
| Q9SZL9 | 1111 | Cellulose synthase-like p | no | no | 0.933 | 0.942 | 0.707 | 0.0 | |
| Q7EZW6 | 1147 | Cellulose synthase-like p | no | no | 0.961 | 0.940 | 0.666 | 0.0 | |
| Q9SRW9 | 1181 | Cellulose synthase-like p | no | no | 0.945 | 0.898 | 0.647 | 0.0 | |
| O49323 | 1036 | Cellulose synthase-like p | no | no | 0.811 | 0.878 | 0.691 | 0.0 |
| >sp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2016 bits (5222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 975/1151 (84%), Positives = 1045/1151 (90%), Gaps = 35/1151 (3%)
Query: 1 MASKS-FRGSRSNLSTSSDAQEL---KPPLPPTVTFARRTSSGRYVNYSRDDLDSELGSS 56
MAS + F SRSNLST+SDA E + P+ +VTFARRT SGRYVNYSRDDLDSELGS
Sbjct: 1 MASNNHFMNSRSNLSTNSDAAEAERHQQPVSNSVTFARRTPSGRYVNYSRDDLDSELGSV 60
Query: 57 DFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHP 116
D Y+VHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLM+KVI++E +HP
Sbjct: 61 DLTGYSVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMEKVIDTETSHP 120
Query: 117 QMAGAKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPY 176
QMAGAKGSSC+V GCD VMSDERG D+LPCECDFKICRDC++DAVKTGG +CPGCKEPY
Sbjct: 121 QMAGAKGSSCAVPGCDVKVMSDERGQDLLPCECDFKICRDCFMDAVKTGG-MCPGCKEPY 179
Query: 177 KNTDLDEVAVDNGRPLP-LPPPAGMSKMERRLSLMKSTKSVLMRSQTGDFDHNRWLFETR 235
+NTDL + A +N + P LPPPAG SKM+RRLSLMKSTKS LMRSQTGDFDHNRWLFET
Sbjct: 180 RNTDLADFADNNKQQRPMLPPPAGGSKMDRRLSLMKSTKSGLMRSQTGDFDHNRWLFETS 239
Query: 236 GTYGYGNAIWPKDGNFGNGKDG--EVAEPQELMNKPWRPLTRKLKIPAAIISPYRVIIFV 293
GTYG+GNA W KDGNFG+ KDG PQ+LM++PWRPLTRKL+IPAA+ISPYR++I +
Sbjct: 240 GTYGFGNAFWTKDGNFGSDKDGNGHGMGPQDLMSRPWRPLTRKLQIPAAVISPYRLLILI 299
Query: 294 RMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKD 353
R+ VL+LFL WRIKHKN DA+WLWGMSVVCE+WFA SWLLDQLPKLCPINR TDLNVLK+
Sbjct: 300 RIVVLALFLMWRIKHKNPDAIWLWGMSVVCELWFALSWLLDQLPKLCPINRATDLNVLKE 359
Query: 354 KFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDD 413
KFETPTP+NPTGKSDLPG+D++VSTADPEKEPPLVT+NTILSILAADYPVEKLACYVSDD
Sbjct: 360 KFETPTPSNPTGKSDLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDD 419
Query: 414 GGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRV 473
GGALLTFEAMAEAASFAN+WVPFCRKH+IEPRNP+SYF+LKRDPYKNKVK+DFVKDRRRV
Sbjct: 420 GGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFSLKRDPYKNKVKADFVKDRRRV 479
Query: 474 KREYDEFK--------------------GEIKAMKLQRQNRDDEPVESVKIPKATWMADG 513
KREYDEFK EIKAMKLQRQNRD+E VE VKIPKATWMADG
Sbjct: 480 KREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKLQRQNRDEEIVEPVKIPKATWMADG 539
Query: 514 THWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYV 573
THWPGTW+N +HSR DHAGIIQVMLKPPSDEPL G +E +DLTDVDIRLP+LVYV
Sbjct: 540 THWPGTWINSGPDHSRSDHAGIIQVMLKPPSDEPLHGVSEG--FLDLTDVDIRLPLLVYV 597
Query: 574 SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGG 633
SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGG
Sbjct: 598 SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGG 657
Query: 634 DRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFD 693
DRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDG+MGP YVGTGCLFRRIALYGFD
Sbjct: 658 DRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLMGPVYVGTGCLFRRIALYGFD 717
Query: 694 PPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMG--DSDDEEMNLSLFPKKFGNST 751
PPRAKEHHPG CSCCF R KK S V PEENR+LRMG DDEEMNLSL PKKFGNST
Sbjct: 718 PPRAKEHHPGFCSCCFSRKKKKSRV---PEENRSLRMGGDSDDDEEMNLSLVPKKFGNST 774
Query: 752 FLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEW 811
FL+DSIPVAEFQGRPLADHP+V+NGRPPGALTIPRELLDASTVAEAI+VISCWYEDKTEW
Sbjct: 775 FLIDSIPVAEFQGRPLADHPAVQNGRPPGALTIPRELLDASTVAEAIAVISCWYEDKTEW 834
Query: 812 GQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 871
G RIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS
Sbjct: 835 GSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 894
Query: 872 VEIFFSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLN 931
VEIFFSRNNA ASP+MK+LQRIAYLNVGIYPFTS FLIVYCFLPALSLFSGQFIVQTLN
Sbjct: 895 VEIFFSRNNAFFASPRMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLN 954
Query: 932 VTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIA 991
VTFL YLL I++TL +LALLEIKWSGI LEEWWRNEQFWLIGGTSAHLAAV+QGLLKV+A
Sbjct: 955 VTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVIQGLLKVVA 1014
Query: 992 GIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIP 1051
GIEISFTLTSKSGG+DVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVG SRTIYSVIP
Sbjct: 1015 GIEISFTLTSKSGGEDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIP 1074
Query: 1052 QWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
QWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLWVAINPPAG
Sbjct: 1075 QWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAG 1134
Query: 1112 TNQIGGSFQFP 1122
+ QIGGSF FP
Sbjct: 1135 STQIGGSFTFP 1145
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Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. Required for synthesis of a cell wall polysaccharide essential for root hair elongation, but not initiation. May be the functional ortholog of rice CSLD1. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q9LFL0|CSLD2_ARATH Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LHZ7|CSLD2_ORYSJ Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2YU42|CSLD2_ORYSI Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8W3F9|CSLD1_ORYSJ Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2ZAK8|CSLD1_ORYSI Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SZL9|CSLD4_ARATH Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7EZW6|CSLD3_ORYSJ Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SRW9|CSLD5_ARATH Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1 | Back alignment and function description |
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| >sp|O49323|CSLD1_ARATH Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1122 | ||||||
| 356497399 | 1143 | PREDICTED: cellulose synthase-like prote | 1.0 | 0.981 | 0.897 | 0.0 | |
| 356538575 | 1143 | PREDICTED: cellulose synthase-like prote | 1.0 | 0.981 | 0.895 | 0.0 | |
| 225454783 | 1149 | PREDICTED: cellulose synthase-like prote | 1.0 | 0.976 | 0.887 | 0.0 | |
| 255558007 | 1143 | Cellulose synthase A catalytic subunit 3 | 1.0 | 0.981 | 0.908 | 0.0 | |
| 224128722 | 1143 | glycosyltransferase, CAZy family GT2 [Po | 1.0 | 0.981 | 0.900 | 0.0 | |
| 224145931 | 1143 | cellulose synthase-like protein [Populus | 1.0 | 0.981 | 0.895 | 0.0 | |
| 449460738 | 1146 | PREDICTED: cellulose synthase-like prote | 0.999 | 0.978 | 0.876 | 0.0 | |
| 449460734 | 1148 | PREDICTED: cellulose synthase-like prote | 1.0 | 0.977 | 0.864 | 0.0 | |
| 449483995 | 1148 | PREDICTED: LOW QUALITY PROTEIN: cellulos | 1.0 | 0.977 | 0.864 | 0.0 | |
| 27372782 | 1104 | cellulose synthase-like protein D4 [Popu | 0.966 | 0.981 | 0.895 | 0.0 |
| >gi|356497399|ref|XP_003517548.1| PREDICTED: cellulose synthase-like protein D3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2153 bits (5579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1143 (89%), Positives = 1093/1143 (95%), Gaps = 21/1143 (1%)
Query: 1 MASKSFRGSRSNLSTSSDAQE-LKPPLPPTVTFARRTSSGRYVNYSRDDLDSELGSSDFM 59
MASK FR SRS++S+SSDA + KPPLPP+V F RRTSSGRYV+YSRDDLDSELGS+DFM
Sbjct: 1 MASKLFRESRSSISSSSDAPDGQKPPLPPSVQFGRRTSSGRYVSYSRDDLDSELGSTDFM 60
Query: 60 NYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMA 119
NYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMA
Sbjct: 61 NYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMA 120
Query: 120 GAKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179
GAKGSSC++ GCD+ VMSDERG DILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT
Sbjct: 121 GAKGSSCAIPGCDSKVMSDERGADILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 180
Query: 180 DLDEVAVDNGRPLPLPPPAGMSKMERRLSLMKSTKSVLMRSQTGDFDHNRWLFETRGTYG 239
+LDEVAVDNGRPLPLPPP+GMSKMERRLS+MKSTKS L+RSQTGDFDHNRWLFET+GTYG
Sbjct: 181 ELDEVAVDNGRPLPLPPPSGMSKMERRLSMMKSTKSALVRSQTGDFDHNRWLFETKGTYG 240
Query: 240 YGNAIWPKDGNFGNGKDGEVAEPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLS 299
YGNAIWPK+G FGN K+ + +P ELMN+PWRPLTRKLKIPAA++SPYR+IIF+R+ VL+
Sbjct: 241 YGNAIWPKEGGFGNEKEDDFVQPTELMNRPWRPLTRKLKIPAAVLSPYRLIIFIRLVVLA 300
Query: 300 LFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPT 359
LFLAWRIKH+N DAVWLWGMSVVCEIWFAFSWLLDQLPKLCP+NR TDLNVLK+KFETPT
Sbjct: 301 LFLAWRIKHQNTDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFETPT 360
Query: 360 PNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLT 419
PNNPTGKSDLPGID++VSTADPEKEPPLVTANTILSILAADYPVEKL+CYVSDDGGALLT
Sbjct: 361 PNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLT 420
Query: 420 FEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDE 479
FEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVK DFVKDRRRVKREYDE
Sbjct: 421 FEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDE 480
Query: 480 FK--------------------GEIKAMKLQRQNRDDEPVESVKIPKATWMADGTHWPGT 519
FK EIKAMK+QRQNR+DEP+E+VKIPKATWMADGTHWPGT
Sbjct: 481 FKVRINSLPDSIRRRSDAYHAREEIKAMKVQRQNREDEPLEAVKIPKATWMADGTHWPGT 540
Query: 520 WMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRP 579
W++P+SEHS+GDHAGIIQVMLKPPSDEPLLG+++DT+LIDLTD+DIRLP+LVYVSREKRP
Sbjct: 541 WLSPTSEHSKGDHAGIIQVMLKPPSDEPLLGSSDDTRLIDLTDIDIRLPLLVYVSREKRP 600
Query: 580 GYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYV 639
GYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNS+A+REGMCFMMDRGGDRLCYV
Sbjct: 601 GYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYV 660
Query: 640 QFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKE 699
QFPQRFEGIDPSDRYANHNTVFFDVNMRALDG+ GP YVGTGCLFRR+ALYGFDPPR+KE
Sbjct: 661 QFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKE 720
Query: 700 HHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPV 759
HH GCC+CCFGR KKH+S+ +TPEENR+LRMGDSDDEEMNLSLFPKKFGNSTFL+DSIPV
Sbjct: 721 HHTGCCNCCFGRQKKHASLASTPEENRSLRMGDSDDEEMNLSLFPKKFGNSTFLIDSIPV 780
Query: 760 AEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIY 819
AEFQGRPLADHP+VKNGRPPGALTIPR+LLDASTVAEAISVISCWYEDKTEWG R+GWIY
Sbjct: 781 AEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGNRVGWIY 840
Query: 820 GSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN 879
GSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN
Sbjct: 841 GSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN 900
Query: 880 NALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLL 939
NALLASP+MK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLL
Sbjct: 901 NALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLL 960
Query: 940 TITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTL 999
ITVTL +LA+LEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTL
Sbjct: 961 GITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTL 1020
Query: 1000 TSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGG 1059
TSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVG+SRTIYSVIPQWSRL+GG
Sbjct: 1021 TSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGG 1080
Query: 1060 VFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSF 1119
VFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGT+QIGGSF
Sbjct: 1081 VFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTDQIGGSF 1140
Query: 1120 QFP 1122
QFP
Sbjct: 1141 QFP 1143
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538575|ref|XP_003537778.1| PREDICTED: cellulose synthase-like protein D3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225454783|ref|XP_002274896.1| PREDICTED: cellulose synthase-like protein D3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255558007|ref|XP_002520032.1| Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis] gi|223540796|gb|EEF42356.1| Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224128722|ref|XP_002328950.1| glycosyltransferase, CAZy family GT2 [Populus trichocarpa] gi|222839184|gb|EEE77535.1| glycosyltransferase, CAZy family GT2 [Populus trichocarpa] gi|429326498|gb|AFZ78589.1| cellulose synthase-like protein [Populus tomentosa] | Back alignment and taxonomy information |
|---|
| >gi|224145931|ref|XP_002325817.1| cellulose synthase-like protein [Populus trichocarpa] gi|222862692|gb|EEF00199.1| cellulose synthase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449460738|ref|XP_004148102.1| PREDICTED: cellulose synthase-like protein D3-like [Cucumis sativus] gi|449483998|ref|XP_004156754.1| PREDICTED: cellulose synthase-like protein D3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449460734|ref|XP_004148100.1| PREDICTED: cellulose synthase-like protein D3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449483995|ref|XP_004156753.1| PREDICTED: LOW QUALITY PROTEIN: cellulose synthase-like protein D3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|27372782|gb|AAO03579.1| cellulose synthase-like protein D4 [Populus tremuloides] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1122 | ||||||
| TAIR|locus:2148171 | 1145 | CSLD2 "AT5G16910" [Arabidopsis | 0.791 | 0.775 | 0.838 | 0.0 | |
| TAIR|locus:2097700 | 1145 | CSLD3 "AT3G03050" [Arabidopsis | 0.592 | 0.580 | 0.875 | 0.0 | |
| TAIR|locus:2024745 | 1181 | CSLD5 "AT1G02730" [Arabidopsis | 0.590 | 0.560 | 0.706 | 0.0 | |
| TAIR|locus:2046505 | 1036 | CSLD1 "AT2G33100" [Arabidopsis | 0.586 | 0.635 | 0.695 | 0.0 | |
| UNIPROTKB|Q2QNS6 | 1215 | CSLD4 "Cellulose synthase-like | 0.555 | 0.512 | 0.702 | 0.0 | |
| TAIR|locus:2031740 | 979 | CSLD6 "AT1G32180" [Arabidopsis | 0.568 | 0.651 | 0.673 | 0.0 | |
| TAIR|locus:2121080 | 1111 | CSLD4 "AT4G38190" [Arabidopsis | 0.406 | 0.410 | 0.669 | 0.0 | |
| TAIR|locus:2156789 | 1065 | CEV1 "CONSTITUTIVE EXPRESSION | 0.543 | 0.572 | 0.499 | 3.4e-239 | |
| TAIR|locus:2127776 | 1081 | CESA1 "cellulose synthase 1" [ | 0.564 | 0.585 | 0.487 | 1.3e-237 | |
| TAIR|locus:2136308 | 1084 | CESA2 "cellulose synthase A2" | 0.549 | 0.569 | 0.469 | 1.3e-237 |
| TAIR|locus:2148171 CSLD2 "AT5G16910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4113 (1452.9 bits), Expect = 0., P = 0.
Identities = 772/921 (83%), Positives = 833/921 (90%)
Query: 222 TGDFDHNRWLFETRGTYGYGNAIWPKDGNFGNGKDGEVAEPQELMNKPWRPLTRKLKIPA 281
TG + + + G +G G KDG+ G+G DG E Q+LM++PWRPLTRKLKIPA
Sbjct: 238 TGTYGYGNAFWTKDGDFGSG-----KDGD-GDG-DGMGMEAQDLMSRPWRPLTRKLKIPA 290
Query: 282 AIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLCP 341
+ISPYR++IF+R+ VL+LFL WR+KH+N DAVWLWGMSVVCE+WFA SWLLDQLPKLCP
Sbjct: 291 GVISPYRLLIFIRIVVLALFLTWRVKHQNPDAVWLWGMSVVCELWFALSWLLDQLPKLCP 350
Query: 342 INRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADY 401
INR TDL VLK+KFETPT +NPTGKSDLPG DV+VSTADPEKEPPLVTANTILSILAA+Y
Sbjct: 351 INRATDLQVLKEKFETPTASNPTGKSDLPGFDVFVSTADPEKEPPLVTANTILSILAAEY 410
Query: 402 PVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNK 461
PVEKL+CYVSDDGGALLTFEAMAEAASFAN+WVPFCRKH IEPRNP+SYF+LKRDPYKNK
Sbjct: 411 PVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHAIEPRNPDSYFSLKRDPYKNK 470
Query: 462 VKSDFVKDRRRVKREYDEFK--------------------GEIKAMKLQRQNRDDEPVES 501
VKSDFVKDRRRVKRE+DEFK EIKAMK+QRQNRDDEP+E
Sbjct: 471 VKSDFVKDRRRVKREFDEFKVRVNSLPDSIRRRSDAYHAREEIKAMKMQRQNRDDEPMEP 530
Query: 502 VKIPKATWMADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLT 561
VKIPKATWMADGTHWPGTW+ +S+H++GDHAGIIQVMLKPPSDEPL G +E +DLT
Sbjct: 531 VKIPKATWMADGTHWPGTWLTSASDHAKGDHAGIIQVMLKPPSDEPLHGVSEG--FLDLT 588
Query: 562 DVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAL 621
DVDIRLP+LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNS+AL
Sbjct: 589 DVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSEAL 648
Query: 622 REGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTG 681
REGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDG+MGP YVGTG
Sbjct: 649 REGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLMGPVYVGTG 708
Query: 682 CLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLS 741
CLFRRIALYGF+PPR+K+ P C SCCF R KK N PEENRALRM D DDEEMNLS
Sbjct: 709 CLFRRIALYGFNPPRSKDFSPSCWSCCFPRSKKK----NIPEENRALRMSDYDDEEMNLS 764
Query: 742 LFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVI 801
L PKKFGNSTFL+DSIPVAEFQGRPLADHP+VKNGRPPGALTIPRELLDASTVAEAI+VI
Sbjct: 765 LVPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAIAVI 824
Query: 802 SCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRL 861
SCWYEDKTEWG RIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRL
Sbjct: 825 SCWYEDKTEWGSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRL 884
Query: 862 HQVLRWATGSVEIFFSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLF 921
HQVLRWATGSVEIFFSRNNALLAS KMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLF
Sbjct: 885 HQVLRWATGSVEIFFSRNNALLASSKMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLF 944
Query: 922 SGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAA 981
SGQFIVQTLNVTFL YLL I++TL +LALLEIKWSGI LEEWWRNEQFWLIGGTSAHLAA
Sbjct: 945 SGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSAHLAA 1004
Query: 982 VLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVG 1041
VLQGLLKV+AG+EISFTLTSKSGGDD+DDEFADLY+VKWTSLMIPPITI+MVNLIAIAVG
Sbjct: 1005 VLQGLLKVVAGVEISFTLTSKSGGDDIDDEFADLYMVKWTSLMIPPITIIMVNLIAIAVG 1064
Query: 1042 LSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISL 1101
SRTIYSV+PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISL
Sbjct: 1065 FSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISL 1124
Query: 1102 LWVAINPPAGTNQIGGSFQFP 1122
LWVAINPPAG +IGG+F FP
Sbjct: 1125 LWVAINPPAGNTEIGGNFSFP 1145
|
|
| TAIR|locus:2097700 CSLD3 "AT3G03050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2024745 CSLD5 "AT1G02730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2046505 CSLD1 "AT2G33100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2QNS6 CSLD4 "Cellulose synthase-like protein D4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2031740 CSLD6 "AT1G32180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121080 CSLD4 "AT4G38190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SZL9 | CSLD4_ARATH | 2, ., 4, ., 1, ., - | 0.7076 | 0.9331 | 0.9423 | no | no |
| Q9LHZ7 | CSLD2_ORYSJ | 2, ., 4, ., 1, ., - | 0.8117 | 0.9714 | 0.9316 | yes | no |
| Q9M9M4 | CSLD3_ARATH | 2, ., 4, ., 1, ., - | 0.8470 | 0.9946 | 0.9746 | yes | no |
| Q9LFL0 | CSLD2_ARATH | 2, ., 4, ., 1, ., - | 0.8337 | 0.9937 | 0.9737 | no | no |
| A2YU42 | CSLD2_ORYSI | 2, ., 4, ., 1, ., - | 0.8117 | 0.9714 | 0.9316 | N/A | no |
| Q8W3F9 | CSLD1_ORYSJ | 2, ., 4, ., 1, ., - | 0.7543 | 0.9590 | 0.9547 | no | no |
| A2YCI3 | CSLD5_ORYSI | 2, ., 4, ., 1, ., - | 0.6680 | 0.8155 | 0.9041 | N/A | no |
| A2ZAK8 | CSLD1_ORYSI | 2, ., 4, ., 1, ., - | 0.7543 | 0.9590 | 0.9547 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | 0.921 |
| 4th Layer | 2.4.1.12 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | estExt_fgenesh4_pg.C_870007 | glycosyltransferase, CAZy family GT2 (EC-2.4.1.12) (1143 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1122 | |||
| PLN02248 | 1135 | PLN02248, PLN02248, cellulose synthase-like protei | 0.0 | |
| pfam03552 | 716 | pfam03552, Cellulose_synt, Cellulose synthase | 0.0 | |
| PLN02915 | 1044 | PLN02915, PLN02915, cellulose synthase A [UDP-form | 0.0 | |
| PLN02436 | 1094 | PLN02436, PLN02436, cellulose synthase A | 0.0 | |
| PLN02638 | 1079 | PLN02638, PLN02638, cellulose synthase A (UDP-form | 0.0 | |
| PLN02189 | 1040 | PLN02189, PLN02189, cellulose synthase | 0.0 | |
| PLN02195 | 977 | PLN02195, PLN02195, cellulose synthase A | 0.0 | |
| PLN02400 | 1085 | PLN02400, PLN02400, cellulose synthase | 0.0 | |
| PLN02190 | 756 | PLN02190, PLN02190, cellulose synthase-like protei | 1e-113 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 4e-82 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 6e-40 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 5e-14 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 5e-13 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 6e-10 | |
| COG1215 | 439 | COG1215, COG1215, Glycosyltransferases, probably i | 3e-09 | |
| PRK11498 | 852 | PRK11498, bcsA, cellulose synthase catalytic subun | 1e-07 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 3e-05 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 7e-04 | |
| cd06423 | 180 | cd06423, CESA_like, CESA_like is the cellulose syn | 7e-04 | |
| pfam13632 | 194 | pfam13632, Glyco_trans_2_3, Glycosyl transferase f | 8e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.002 | |
| COG1215 | 439 | COG1215, COG1215, Glycosyltransferases, probably i | 0.003 | |
| cd06435 | 236 | cd06435, CESA_NdvC_like, NdvC_like proteins in thi | 0.003 | |
| PLN02638 | 1079 | PLN02638, PLN02638, cellulose synthase A (UDP-form | 0.004 | |
| pfam13641 | 229 | pfam13641, Glyco_tranf_2_3, Glycosyltransferase li | 0.004 |
| >gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein | Back alignment and domain information |
|---|
Score = 2440 bits (6325), Expect = 0.0
Identities = 919/1148 (80%), Positives = 1001/1148 (87%), Gaps = 39/1148 (3%)
Query: 1 MASKSFRGSRSNLSTSSDAQEL---KPPLPPTVTFARRTSSGRYVNYSRDDLD--SELGS 55
MAS S + SR +LS+SS + P +V FARRTSSGRYV+ SRDDLD EL S
Sbjct: 1 MASSSSKPSRKSLSSSSSSAGPPSNNSSSPQSVKFARRTSSGRYVSLSRDDLDLSGELSS 60
Query: 56 SDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANH 115
SD++NYTVHIPPTPDNQPM + K EEQYVSNS+FTGGFNSVTRAHLMDKVIESE +H
Sbjct: 61 SDYLNYTVHIPPTPDNQPM----AGKAEEQYVSNSIFTGGFNSVTRAHLMDKVIESEVSH 116
Query: 116 PQMAGAKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEP 175
PQMAGAKGSSC++ GCD VM DERG D+LPCEC FKICRDCYIDAVK+GG ICPGCKEP
Sbjct: 117 PQMAGAKGSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSGG-ICPGCKEP 175
Query: 176 YKNTDLDEVAVD-NGRPLPLPPPAGMSKMERRLSLMKSTKSVLMRSQTGDFDHNRWLFET 234
YK TDLD+ D + LPLPPP G SKM+RRLSLMKS S+LMRSQTGDFDHNRWLFET
Sbjct: 176 YKVTDLDDEVPDESSGALPLPPP-GGSKMDRRLSLMKS-NSLLMRSQTGDFDHNRWLFET 233
Query: 235 RGTYGYGNAIWPKDGNFGNGKDGEVAEPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVR 294
+GTYGYGNA+WPKD +G+ G P E M+KPWRPLTRK+KI AAI+SPYR++I +R
Sbjct: 234 KGTYGYGNAVWPKDDGYGDDGGGG--GPGEFMDKPWRPLTRKVKISAAILSPYRLLILIR 291
Query: 295 MAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDK 354
+ VL LFL WR+++ NEDA+WLWGMSVVCEIWFAFSWLLDQLPKLCPINR TDL VLK+K
Sbjct: 292 LVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEK 351
Query: 355 FETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDG 414
FETP+P+NPTG+SDLPGIDV+VSTADPEKEPPLVTANTILSILAADYPVEKLACY+SDDG
Sbjct: 352 FETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDG 411
Query: 415 GALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVK 474
GALLTFEAMAEAASFA +WVPFCRKHDIEPRNPESYF+LKRDP KNKV+ DFVKDRRRVK
Sbjct: 412 GALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVK 471
Query: 475 REYDEFK--------------------GEIKAMKLQRQNRDDEPVESVKIPKATWMADGT 514
REYDEFK EIKA K QR++ +P E +K+PKATWMADGT
Sbjct: 472 REYDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATWMADGT 531
Query: 515 HWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVS 574
HWPGTW++ + +HSRGDHAGIIQVMLKPPSDEPL+G+A+D LID TDVDIRLPMLVYVS
Sbjct: 532 HWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVS 591
Query: 575 REKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGD 634
REKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNS A+REGMCFMMDRGGD
Sbjct: 592 REKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGD 651
Query: 635 RLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDP 694
R+CYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDG+ GP YVGTGCLFRRIALYGFDP
Sbjct: 652 RICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDP 711
Query: 695 PRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLV 754
PRAKEH SC F + KK + + PEE L DD+++ LSL PK+FGNST
Sbjct: 712 PRAKEHSGCFGSCKFTKKKKKETSASEPEEQPDLE----DDDDLELSLLPKRFGNSTMFA 767
Query: 755 DSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQR 814
SIPVAEFQGRPLADHPSVKNGRPPGALT+PRE LDA+TVAEAISVISCWYEDKTEWG R
Sbjct: 768 ASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDR 827
Query: 815 IGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEI 874
+GWIYGSVTEDVVTGYRMHNRGW+SVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEI
Sbjct: 828 VGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEI 887
Query: 875 FFSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTF 934
FFSRNNALLAS ++K LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTF
Sbjct: 888 FFSRNNALLASRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTF 947
Query: 935 LSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIE 994
L YLL IT+TL +LA+LEIKWSGI LEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIE
Sbjct: 948 LVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIE 1007
Query: 995 ISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWS 1054
ISFTLTSKS GDD DDEFADLYIVKWTSLMIPPITIMMVNLIAIAVG+SRTIYS IPQWS
Sbjct: 1008 ISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWS 1067
Query: 1055 RLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQ 1114
+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL++ITISLLWVAI+PP+G Q
Sbjct: 1068 KLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGAAQ 1127
Query: 1115 IGGSFQFP 1122
IGG FQFP
Sbjct: 1128 IGGGFQFP 1135
|
Length = 1135 |
| >gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
| >gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
| >gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1122 | |||
| PLN02248 | 1135 | cellulose synthase-like protein | 100.0 | |
| PLN02400 | 1085 | cellulose synthase | 100.0 | |
| PLN02436 | 1094 | cellulose synthase A | 100.0 | |
| PLN02638 | 1079 | cellulose synthase A (UDP-forming), catalytic subu | 100.0 | |
| PLN02915 | 1044 | cellulose synthase A [UDP-forming], catalytic subu | 100.0 | |
| PLN02189 | 1040 | cellulose synthase | 100.0 | |
| PLN02195 | 977 | cellulose synthase A | 100.0 | |
| PF03552 | 720 | Cellulose_synt: Cellulose synthase; InterPro: IPR0 | 100.0 | |
| PLN02190 | 756 | cellulose synthase-like protein | 100.0 | |
| PLN02893 | 734 | Cellulose synthase-like protein | 100.0 | |
| TIGR03030 | 713 | CelA cellulose synthase catalytic subunit (UDP-for | 100.0 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 100.0 | |
| PRK05454 | 691 | glucosyltransferase MdoH; Provisional | 100.0 | |
| cd04191 | 254 | Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon | 99.97 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 99.96 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 99.96 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 99.94 | |
| PF14569 | 80 | zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. | 99.94 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 99.93 | |
| PRK14716 | 504 | bacteriophage N4 adsorption protein B; Provisional | 99.92 | |
| PRK11234 | 727 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.89 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 99.89 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 99.88 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 99.86 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 99.85 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 99.82 | |
| PRK15489 | 703 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.8 | |
| cd04190 | 244 | Chitin_synth_C C-terminal domain of Chitin Synthas | 99.75 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 99.74 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 99.71 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 99.67 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 99.66 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 99.65 | |
| PF13632 | 193 | Glyco_trans_2_3: Glycosyl transferase family group | 99.64 | |
| COG2943 | 736 | MdoH Membrane glycosyltransferase [Cell envelope b | 99.58 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 99.47 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 99.47 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 99.46 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 99.12 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 99.11 | |
| PF13506 | 175 | Glyco_transf_21: Glycosyl transferase family 21 | 99.08 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 99.03 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 99.0 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 98.73 | |
| PF03142 | 527 | Chitin_synth_2: Chitin synthase; InterPro: IPR0048 | 98.71 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 98.67 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 98.62 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 98.6 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 98.56 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 98.51 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 98.5 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 98.49 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 98.43 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 98.4 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 98.36 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 98.31 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 98.31 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 98.29 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 98.05 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 98.05 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 97.93 | |
| KOG2571 | 862 | consensus Chitin synthase/hyaluronan synthase (gly | 97.88 | |
| PRK10018 | 279 | putative glycosyl transferase; Provisional | 97.83 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 97.75 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 97.71 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 97.63 | |
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 97.38 | |
| COG1216 | 305 | Predicted glycosyltransferases [General function p | 97.3 | |
| PRK10063 | 248 | putative glycosyl transferase; Provisional | 97.28 | |
| PRK13915 | 306 | putative glucosyl-3-phosphoglycerate synthase; Pro | 97.08 | |
| PF10111 | 281 | Glyco_tranf_2_2: Glycosyltransferase like family 2 | 96.76 | |
| KOG2068 | 327 | consensus MOT2 transcription factor [Transcription | 95.86 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 95.07 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 94.58 | |
| KOG2547 | 431 | consensus Ceramide glucosyltransferase [Lipid tran | 89.63 | |
| cd02514 | 334 | GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es | 89.31 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 86.84 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 86.28 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 85.93 | |
| KOG2068 | 327 | consensus MOT2 transcription factor [Transcription | 84.49 | |
| COG0463 | 291 | WcaA Glycosyltransferases involved in cell wall bi | 80.99 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 80.97 |
| >PLN02248 cellulose synthase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-324 Score=2870.91 Aligned_cols=1084 Identities=83% Similarity=1.400 Sum_probs=1006.6
Q ss_pred CCCCCccccccccCCCcccccccccccccCCC--CCcceeeEEcCCCCCCCCCCcccchhhhhhhhccccccCCCCcccc
Q 001213 24 PPLPPTVTFARRTSSGRYVNYSRDDLDSELGS--SDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTR 101 (1122)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1122)
+...++++|+|||+||||+|+||||+|++++. +||+||||||||||||||| +.++||||+|+++||||||+|||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 102 (1135)
T PLN02248 27 SSSPQSVKFARRTSSGRYVSLSRDDLDLSGELSSSDYLNYTVHIPPTPDNQPM----AGKAEEQYVSNSIFTGGFNSVTR 102 (1135)
T ss_pred CCCCCCCCCCccCCCCcceeccccccccccccccccceeeEEeCCCCCCCccc----ccchhhhccccceecCCCCccch
Confidence 34446699999999999999999999988887 5999999999999999999 77899999999999999999999
Q ss_pred chhhhhhhccccCCCccCCCCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCCc
Q 001213 102 AHLMDKVIESEANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTDL 181 (1122)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d~ 181 (1122)
+|+|||+||++++|||+++++|++|.++||++++|.||+|++..||||+|+|||+||.|+.++| +.|||||++||.+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 103 AHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSG-GICPGCKEPYKVTDL 181 (1135)
T ss_pred hhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcC-CCCCCCccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999996 899999999999987
Q ss_pred cccccCC-CCCCCCCCCCCCchhhhhhhcccccccccccCCCCCCCCccccccCCCCccccccccCCCCCCCCCCCCCCC
Q 001213 182 DEVAVDN-GRPLPLPPPAGMSKMERRLSLMKSTKSVLMRSQTGDFDHNRWLFETRGTYGYGNAIWPKDGNFGNGKDGEVA 260 (1122)
Q Consensus 182 e~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~w~~~~~~~~~~~~~~~ 260 (1122)
++++.|. ...++++.+. ..+++++++.+++ .+++.++|++||||+||++|+||+|||||+.|+++...++++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (1135)
T PLN02248 182 DDEVPDESSGALPLPPPG-GSKMDRRLSLMKS-NSLLMRSQTGDFDHNRWLFETKGTYGYGNAVWPKDDGYGDDGGGGG- 258 (1135)
T ss_pred cccccccccccccCCCCC-Ccccccccccccc-cchhccCCCCCCCCceeeeecccccccccccCccccccCCCCCccc-
Confidence 7776543 3456677664 3456677777766 6778889999999999999999999999999999866544333222
Q ss_pred CcccccCCCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccce
Q 001213 261 EPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLC 340 (1122)
Q Consensus 261 ~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~~~E~wfa~~W~l~q~~kw~ 340 (1122)
..+++||+|+||+||+++++++|+|||+++++||++|++||+||++|++.+++|+|+++|+||+||||+|+|+|++||+
T Consensus 259 -~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~ 337 (1135)
T PLN02248 259 -PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLC 337 (1135)
T ss_pred -cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2378999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhH
Q 001213 341 PINRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTF 420 (1122)
Q Consensus 341 Pi~R~t~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf 420 (1122)
||+|.||+|||++|||+|+++||+|+++||+||||||||||+||||++|+||||||||+|||+|||+|||||||||+|||
T Consensus 338 Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf 417 (1135)
T PLN02248 338 PINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTF 417 (1135)
T ss_pred ccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 001213 421 EAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQR--------- 491 (1122)
Q Consensus 421 ~aL~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~--------- 491 (1122)
|||+|||+|||+||||||||+|||||||+||++|.++++++++++|++|||+|||||||||+|||.|...+
T Consensus 418 ~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~ 497 (1135)
T PLN02248 418 EAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNA 497 (1135)
T ss_pred HHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999885311
Q ss_pred -----------hcCCCCCcccccccccccccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCcccccccc
Q 001213 492 -----------QNRDDEPVESVKIPKATWMADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDL 560 (1122)
Q Consensus 492 -----------~~~~~~~~e~~~~~~~~wm~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~ 560 (1122)
++.+.+|.|.+++||+|||+|||||||||+++.++|+++|||+||||||+++++++..|..++++.+|+
T Consensus 498 ~~e~~~~~~~~~~~~~~~~e~~~~~~~~wm~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~ 577 (1135)
T PLN02248 498 REEIKAKKKQRESGGGDPSEPLKVPKATWMADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDF 577 (1135)
T ss_pred hHHHHhhhhhhhhcccccccccccccceeeccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccc
Confidence 122567788899999999999999999999999999999999999999999999999886667789999
Q ss_pred ccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEc
Q 001213 561 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQ 640 (1122)
Q Consensus 561 ~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQ 640 (1122)
+++|++||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||++||+|||||||++|+++||||
T Consensus 578 ~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQ 657 (1135)
T PLN02248 578 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQ 657 (1135)
T ss_pred cccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCcccccc-CcCccCCCcC
Q 001213 641 FPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCF-GRHKKHSSVT 719 (1122)
Q Consensus 641 fPQrF~nid~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~-~~~~~~~~~~ 719 (1122)
|||+|||+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||+..+. .++|++|| +++++.....
T Consensus 658 FPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~-~~~~~~~~~~~~~~~~~~~ 736 (1135)
T PLN02248 658 FPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEH-SGCFGSCKFTKKKKKETSA 736 (1135)
T ss_pred CCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccccc-ccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999988665 34444444 4333321111
Q ss_pred CCchhhhhhcCCCC-chhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhh
Q 001213 720 NTPEENRALRMGDS-DDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAI 798 (1122)
Q Consensus 720 ~~~~~~~~~~~~~~-~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~ 798 (1122)
..+. + +++. ++++++...+++|||+|+.|++|+..++.+|++.++++++++++++|++.++++++++++++||+
T Consensus 737 ~~~~--~---~~~~~~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~ 811 (1135)
T PLN02248 737 SEPE--E---QPDLEDDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAI 811 (1135)
T ss_pred cccc--c---cccccccchhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHH
Confidence 1111 1 1111 22244555688999999999999988899999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhh
Q 001213 799 SVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 878 (1122)
Q Consensus 799 ~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr 878 (1122)
+|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.++++||+|||+|++||++++
T Consensus 812 ~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr 891 (1135)
T PLN02248 812 SVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 891 (1135)
T ss_pred hhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhcc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccccccCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001213 879 NNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGI 958 (1122)
Q Consensus 879 ~~pLl~~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGv 958 (1122)
++|++..++|+++||++|+++++||++++++++|+++|++||++|++++++.+..|++|++++++++++++++|++|+|+
T Consensus 892 ~~Pll~~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGv 971 (1135)
T PLN02248 892 NNALLASRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGI 971 (1135)
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99988778999999999999999999999999999999999999999999988899999988888889999999999999
Q ss_pred chhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHH
Q 001213 959 ELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAI 1038 (1122)
Q Consensus 959 sl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAi 1038 (1122)
++++|||+||||+|+++++|++|++++++|+|++++++|+||+|+.+++.+++|+++|+|+||++++|+++++++|++|+
T Consensus 972 sl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAi 1051 (1135)
T PLN02248 972 TLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAI 1051 (1135)
T ss_pred cHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987777778999999999999999999999999999
Q ss_pred HHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCCCCCCCCcc
Q 001213 1039 AVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGS 1118 (1122)
Q Consensus 1039 v~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~~~~~~~~~ 1118 (1122)
++|++|++++.++.|+.+++++|+++|+++|+|||++|||||+||+||||+|||+++++++|||||+|+||.+.+++||+
T Consensus 1052 vvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~~~~~~~ 1131 (1135)
T PLN02248 1052 AVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGAAQIGGG 1131 (1135)
T ss_pred HHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccccCccccCce
Confidence 99999999877777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 001213 1119 FQFP 1122 (1122)
Q Consensus 1119 ~~~~ 1122 (1122)
||||
T Consensus 1132 ~~~~ 1135 (1135)
T PLN02248 1132 FQFP 1135 (1135)
T ss_pred ecCC
Confidence 9998
|
|
| >PLN02400 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02436 cellulose synthase A | Back alignment and domain information |
|---|
| >PLN02638 cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
| >PLN02915 cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >PLN02189 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02195 cellulose synthase A | Back alignment and domain information |
|---|
| >PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals | Back alignment and domain information |
|---|
| >PLN02190 cellulose synthase-like protein | Back alignment and domain information |
|---|
| >PLN02893 Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >PRK05454 glucosyltransferase MdoH; Provisional | Back alignment and domain information |
|---|
| >cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan | Back alignment and domain information |
|---|
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A | Back alignment and domain information |
|---|
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
| >PRK14716 bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
| >PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin | Back alignment and domain information |
|---|
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
| >PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
| >PF13506 Glyco_transf_21: Glycosyl transferase family 21 | Back alignment and domain information |
|---|
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
| >PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 | Back alignment and domain information |
|---|
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >PRK10018 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
| >COG1216 Predicted glycosyltransferases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10063 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
| >PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] | Back alignment and domain information |
|---|
| >KOG2068 consensus MOT2 transcription factor [Transcription] | Back alignment and domain information |
|---|
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >KOG2068 consensus MOT2 transcription factor [Transcription] | Back alignment and domain information |
|---|
| >COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1122 | ||||
| 4hg6_A | 802 | Structure Of A Cellulose Synthase - Cellulose Trans | 4e-08 |
| >pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 96.7 bits (240), Expect = 3e-24
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 110 ESEANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGI 168
+ + G C + C + G + C EC F CR CY + G
Sbjct: 3 SGSSGPKPLKNLDGQFCEI--CGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQN 60
Query: 169 CPGCKEPYK--------NTDLDEVAVDNG 189
CP CK YK D DE +D+G
Sbjct: 61 CPQCKTRYKRLRGSPRVEGDEDEEDIDSG 89
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1122 | |||
| 4hg6_A | 802 | Cellulose synthase subunit A; membrane translocati | 100.0 | |
| 1weo_A | 93 | Cellulose synthase, catalytic subunit (IRX3); stru | 99.93 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 99.28 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 99.24 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 99.13 | |
| 2ffu_A | 501 | Ppgalnact-2, polypeptide N-acetylgalactosaminyltra | 99.11 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 99.01 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 99.0 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 98.83 | |
| 4fix_A | 657 | UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 | 98.35 | |
| 3ckj_A | 329 | Putative uncharacterized protein; mycobacteria, un | 98.26 | |
| 3l7i_A | 729 | Teichoic acid biosynthesis protein F; GT-B fold, m | 98.12 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 97.42 | |
| 3f1y_A | 387 | Mannosyl-3-phosphoglycerate synthase; GT-A type gl | 97.21 | |
| 2fy7_A | 287 | Beta-1,4-galactosyltransferase 1; M339H mutant, AP | 96.91 | |
| 2nxv_A | 249 | ATP synthase subunits region ORF 6; majastridin, A | 93.46 | |
| 1fo8_A | 343 | Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl | 90.97 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 87.54 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 86.85 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 86.48 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 86.42 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 84.13 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 83.88 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 83.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 82.65 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 82.07 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 81.53 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 81.3 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 81.26 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 80.59 |
| >4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=467.74 Aligned_cols=493 Identities=21% Similarity=0.313 Sum_probs=378.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC-c----hhHHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhhhhhcCCCCCCCC
Q 001213 289 VIIFVRMAVLSLFLAWRIKHKNE-D----AVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPTPNNP 363 (1122)
Q Consensus 289 ~~~~~~lv~l~~~l~~Ri~~~~~-~----~~~lW~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~p 363 (1122)
+++++.+++.+.|++||++.+.. . ..++|++++++|+++.+.|++.++..|+|+.|.+.++.
T Consensus 68 ~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~------------- 134 (802)
T 4hg6_A 68 LLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL------------- 134 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-------------
Confidence 34555566667899999987632 2 35688899999999999999999999999998754321
Q ss_pred CCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCC
Q 001213 364 TGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIE 443 (1122)
Q Consensus 364 ~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~Ie 443 (1122)
.++++|.|+|+|||+ +|++.++.+|+.|++++|||.+|+.++|.|||.+.-|.+.
T Consensus 135 -~~~~~P~VSViIPty---Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~--------------------- 189 (802)
T 4hg6_A 135 -QPEELPTVDILVPSY---NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS--------------------- 189 (802)
T ss_dssp -CTTTCCCEEEEEECT---TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC---------------------
T ss_pred -CccCCCcEEEEEEEC---CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc---------------------
Confidence 146799999999999 8999999999999999999999999999999998855331
Q ss_pred CCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccccccCCCCCCCccCCC
Q 001213 444 PRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPKATWMADGTHWPGTWMNP 523 (1122)
Q Consensus 444 pR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~wm~dgt~w~g~~~~~ 523 (1122)
.+++.+++ +++-...++++...
T Consensus 190 ------------------~d~~i~~~-------~~~~~~~l~~~~~~--------------------------------- 211 (802)
T 4hg6_A 190 ------------------PDPELAQK-------AQERRRELQQLCRE--------------------------------- 211 (802)
T ss_dssp ------------------SSHHHHHH-------HHHHHHHHHHHHHH---------------------------------
T ss_pred ------------------CCHHHHHH-------HHhhhHHHHHHHHh---------------------------------
Confidence 01222222 11111222222100
Q ss_pred CCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCC
Q 001213 524 SSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNG 603 (1122)
Q Consensus 524 ~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltng 603 (1122)
..+.|+.|+++ ++.||||+|.+++. +++
T Consensus 212 --------------------------------------------~~v~~i~~~~~----~~GKa~alN~gl~~----a~g 239 (802)
T 4hg6_A 212 --------------------------------------------LGVVYSTRERN----EHAKAGNMSAALER----LKG 239 (802)
T ss_dssp --------------------------------------------HTCEEEECSSC----CSHHHHHHHHHHHH----CCC
T ss_pred --------------------------------------------cCcEEEEecCC----CCcchHHHHHHHHh----cCC
Confidence 01567887763 56899999999985 589
Q ss_pred CEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCc-------ChhhhhhhhhhhhhhhhhcccCCcc
Q 001213 604 PFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPS-------DRYANHNTVFFDVNMRALDGVMGPF 676 (1122)
Q Consensus 604 pfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~-------D~y~n~~~vFfdi~~~glDGlqgp~ 676 (1122)
+||+.+|||.++ +|++|++.+.+|.+ ++++++||.|+.+.|.++. +++.+++..||....++.+++++++
T Consensus 240 d~Il~lDaD~~~-~pd~L~~lv~~~~~--dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (802)
T 4hg6_A 240 ELVVVFDADHVP-SRDFLARTVGYFVE--DPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAF 316 (802)
T ss_dssp SEEEECCTTEEE-CTTHHHHHHHHHHH--SSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCC
T ss_pred CEEEEECCCCCc-ChHHHHHHHHHHhc--CCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCce
Confidence 999999999997 79999999999964 2799999999999987632 3455677889999999999999999
Q ss_pred ccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhcccCccccCcchhhcc
Q 001213 677 YVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDS 756 (1122)
Q Consensus 677 yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S 756 (1122)
++|++++|||+++..
T Consensus 317 ~~G~~~~~Rr~al~~----------------------------------------------------------------- 331 (802)
T 4hg6_A 317 FCGSAAVLRRRALDE----------------------------------------------------------------- 331 (802)
T ss_dssp CCSSSEEEEHHHHHH-----------------------------------------------------------------
T ss_pred ecccchhhhHHHHHH-----------------------------------------------------------------
Confidence 999999999999852
Q ss_pred chhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHHHHHHHhCC
Q 001213 757 IPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRG 836 (1122)
Q Consensus 757 ~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rG 836 (1122)
+| ||...+++||.+++++++.+|
T Consensus 332 -----vG----------------------------------------------------gf~~~~~~ED~~l~~rl~~~G 354 (802)
T 4hg6_A 332 -----AG----------------------------------------------------GFAGETITEDAETALEIHSRG 354 (802)
T ss_dssp -----HT----------------------------------------------------TCCCSSSSHHHHHHHHHHTTT
T ss_pred -----cC----------------------------------------------------CcCCCCcchHHHHHHHHHHcC
Confidence 22 677778899999999999999
Q ss_pred CeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccccccCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 001213 837 WKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLP 916 (1122)
Q Consensus 837 WrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP 916 (1122)
|+++|++ .+.+++.+|+|+.++++||.||++|.+|+++.+ +|++ .+++++.+|+.|+...++++.+++.++++++|
T Consensus 355 ~ri~~~~--~~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~~-~pl~-~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p 430 (802)
T 4hg6_A 355 WKSLYID--RAMIAGLQPETFASFIQQRGRWATGMMQMLLLK-NPLF-RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAP 430 (802)
T ss_dssp CCEEECC--CCCEEECCCCSHHHHHHHHHHHHHHHHHHHHHS-CTTS-CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CeEEEec--CCEEEecCCCCHHHHHHHHHHHHccHHHHHHHh-Cccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 467789999999999999999999999999864 5665 68899999999999989999999999999999
Q ss_pred HHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001213 917 ALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEIS 996 (1122)
Q Consensus 917 ~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~ 996 (1122)
+++++++..++......++.+++|+++...+... ... |.....|| ++.++.+ ..++.+...+...+++++.+
T Consensus 431 ~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~--~~~-~~~r~~~~-~~l~~~~----~~~~~~~a~l~~l~~~~~~~ 502 (802)
T 4hg6_A 431 LIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQN--ALF-ARQRWPLV-SEVYEVA----QAPYLARAIVTTLLRPRSAR 502 (802)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHH--HHH-TTTSCTTH-HHHHHHH----HHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHH--HHh-cCcHHHHH-HHHHHHH----HHHHHHHHHHHHHhCCCCCc
Confidence 9999999998887777777777777665443221 111 22111233 2233322 22222222233344568889
Q ss_pred eEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHH
Q 001213 997 FTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKG 1076 (1122)
Q Consensus 997 F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~G 1076 (1122)
|.||+|+...+. .+ + + .++.|.+++++++++++++|+++...... ...+.+++++|+++|++.+.-+
T Consensus 503 f~VT~Kg~~~~~--~~-----~-~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~ 569 (802)
T 4hg6_A 503 FAVTAKDETLSE--NY-----I-S-PIYRPLLFTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFA 569 (802)
T ss_dssp CCCCCCCCCCSS--CC-----B-C-TTCHHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceECCCCccccc--cc-----h-h-hHHHHHHHHHHHHHHHHHHHHHHHhccCC----ccchhhhhhHHHHHHHHHHHHH
Confidence 999999875421 11 1 2 46789999999999999999998876432 2335678899999999999988
Q ss_pred Hhh
Q 001213 1077 LMG 1079 (1122)
Q Consensus 1077 L~g 1079 (1122)
+..
T Consensus 570 ~~~ 572 (802)
T 4hg6_A 570 LRA 572 (802)
T ss_dssp HTT
T ss_pred HHH
Confidence 864
|
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
| >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* | Back alignment and structure |
|---|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
| >4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* | Back alignment and structure |
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| >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A | Back alignment and structure |
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| >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* | Back alignment and structure |
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| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
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| >3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* | Back alignment and structure |
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| >2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... | Back alignment and structure |
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| >2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A* | Back alignment and structure |
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| >1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* | Back alignment and structure |
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| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
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| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
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| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
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| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
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| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
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| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
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| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
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| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1122 | ||||
| d1weoa_ | 93 | g.44.1.1 (A:) Cellulose synthase A catalytic subun | 3e-06 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 7e-05 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 44.5 bits (105), Expect = 3e-06
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 110 ESEANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGI 168
+ + G C + C + G + C EC F CR CY + G
Sbjct: 3 SGSSGPKPLKNLDGQFCEI--CGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQN 60
Query: 169 CPGCKEPYK--------NTDLDEVAVDNG 189
CP CK YK D DE +D+G
Sbjct: 61 CPQCKTRYKRLRGSPRVEGDEDEEDIDSG 89
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1122 | |||
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 99.94 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 99.11 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 98.12 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 97.68 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 96.88 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 95.37 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 93.8 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 83.47 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 80.25 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=4.1e-28 Score=215.47 Aligned_cols=67 Identities=28% Similarity=0.681 Sum_probs=63.9
Q ss_pred ccCCCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 112 EANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 112 ~~~~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
+..+++++.+++|+||| |||+||++++|++|||| ||+|||||+|||||||||+|+|||||++|||+.
T Consensus 5 ~~g~kp~~~~~~q~Cqi--CGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~k 72 (93)
T d1weoa_ 5 SSGPKPLKNLDGQFCEI--CGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SSSSSCCSCCSSCBCSS--SCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred CCCCCChhhcccchhhh--cccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhc
Confidence 44588999999999999 99999999999999999 999999999999999999999999999999973
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|