Citrus Sinensis ID: 001214

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120--
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFFVKKKKFIVVIVV
cccHHHHHHHHHccEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHHHccccccccccccccccEEEEEccEEEEccccHHHHccccccHHHHHHHHHccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEc
cccHHHHHHHHHccEEEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccEEEEEEcccEEEEcHHHHHHcccccHHHHHHHHHccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccccccccEccHHHHHHHHcccHHEEEEEEcccccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHcccccEEcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccEEcccccccEEEEc
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINnsigqdpnsksliGVLDIygfesfktnsFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINwsyiefvdnqDILDLIEKKPGGIIALLdeacmfprsthETFAQKLYQTFKnhkrfskpklarsdftichyagdvtyqtelfldknkDYVVAEHQALLSaskcsfvsslflplaeessktskfssiGSRFKQQLQQLLETlsssephyircvkpnnllkpaifENKNVLQQLRCGGVMEAIRIscagyptrkpfdEFVDRFGILASkvldgssdEVTACKRLLEKvglegyqigKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEaekvpvvqevpvIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSllstpikkmsehisapatqslenghhvieenisnepqsatpvkklgtesdsKLRRSHIEHQHENVDALINCVAKnlgycngkpvAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAieneddndhMAYWLSNTSTLLFLLQRSLKaagasgatphkkpptatslfgrmamgfrsspsSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIqaprtskgsvlrsgrsfgkdsasSHWQSIIDSLNTLLSTlkqnfvppvlVQKIFTQTFSYINVQLFNSLLLRrecctfsngeyvKAGLAELELWCCQAkeeyagssWDELKHIRQAVGFLVIHQKYRISYdeitndlcpilSVQQLYRICTLywddnyntrsvspnVISSMRILMtedsndatsnsffvkkKKFIVVIVV
mcdakaledslckreivtrdetitkwldpeaaavsrDALAKIVYSRLFDWLVEKINnsigqdpnsksLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILAskvldgssdeVTACKRLlekvglegyqigktkvflragQMADLDARrtevlgrsasiiqrkvrsylSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAaittqcawrgkVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKkeaekvpvvqevpvIDHAVVeeltseneklkTLVSSlekkidetekkfeetskiseerlKQALEAESKIVQLKTAMHRLEEkvsdmeteNQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENisnepqsatpvkkLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAagasgatphkkppTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQaprtskgsvlrsgRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYwddnyntrsvSPNVISSMRILMTEdsndatsnsffvkkkkFIVVIVV
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEEssktskfssigsRFKqqlqqlletlsssePHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMkeievakkeaekvpvvqevpviDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRsspssanlaaaaalaVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKElssllslCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSffvkkkkfivvivv
**********LCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPL********************************PHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLK**********************LTWRL*****************************************************PVVQEVPVIDHAVVE*******************************************************************************************************************************************NVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSL************************************LAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQA**********************HWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMT********NSFFVKKKKFIVVIV*
*CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS***********************KQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLD***D*VTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAW****************************************************************************************************************************************************************************************************************************************************************************AAFTIYKCLLHWKSFEAERTSVFDRLIQ************DHMAYWLSNTSTLLFLLQ***********************************************VVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKEL***********************************SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVIS******************FVKKKKFIVVIVV
********DSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA*************SRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKA************PTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR*********************WQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFFVKKKKFIVVIVV
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP***********SSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLS**************************************************RRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAA*****************F*R*AMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR******************SSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFFVKKKKFIVVIVV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPVVQEVPVIDHAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEERLKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFFVKKKKFIVVIVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1122 2.2.26 [Sep-21-2011]
P54697 2245 Myosin-J heavy chain OS=D yes no 0.509 0.254 0.413 1e-129
Q02440 1829 Unconventional myosin-Va yes no 0.606 0.371 0.373 1e-123
Q9Y4I1 1855 Unconventional myosin-Va yes no 0.598 0.361 0.372 1e-121
Q99104 1853 Unconventional myosin-Va yes no 0.591 0.358 0.375 1e-120
Q9QYF3 1828 Unconventional myosin-Va yes no 0.590 0.362 0.374 1e-119
P21271 1818 Unconventional myosin-Vb no no 0.485 0.299 0.401 1e-119
Q9ULV0 1848 Unconventional myosin-Vb no no 0.614 0.373 0.360 1e-119
P70569 1846 Unconventional myosin-Vb no no 0.517 0.314 0.387 1e-117
Q876G91568 Myosin-2 OS=Saccharomyces N/A no 0.580 0.415 0.358 1e-108
Q875X31567 Myosin-2A OS=Naumovozyma yes no 0.617 0.442 0.347 1e-107
>sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2 Back     alignment and function desciption
 Score =  462 bits (1190), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/622 (41%), Positives = 367/622 (59%), Gaps = 50/622 (8%)

Query: 7    LEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNS--IGQDPN 64
            L +S+  R++VT  E+       E A  +RD+L+  +Y  +FDWLV KIN+S  I     
Sbjct: 417  LLNSMLTRKVVTGKESYISHNTKERAENARDSLSMFLYGMMFDWLVVKINSSMSISTQQK 476

Query: 65   SKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIE 124
            SKS IGVLDIYGFESF+ N FEQFCIN  NEKLQQ FNQHVFK EQ+EY KE I+WSYI+
Sbjct: 477  SKSFIGVLDIYGFESFEVNGFEQFCINYANEKLQQLFNQHVFKEEQQEYIKEKIDWSYID 536

Query: 125  FVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDF 184
            F DNQD LDLIEKKP  I+ LLDE  MFP++T +T A KLY    +H +F KP+ + + F
Sbjct: 537  FNDNQDTLDLIEKKPICILTLLDEETMFPKATPQTLATKLYSKMTSHSKFEKPRFSSTAF 596

Query: 185  TICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFL--------------- 229
            TI HYAG VTY+T+ FLDKNKD+++ E  ++L  S  SF+  L                 
Sbjct: 597  TINHYAGKVTYETDQFLDKNKDFIIPEQISILQRSNFSFIKVLMSHSDKFTQSPGGHPQG 656

Query: 230  ---PLAEESSKTS-----KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIF 281
               P +  +  TS     KF S+GS+F   L  L++T+S++ PHY+RC+KPN    P  F
Sbjct: 657  NGGPTSSNTKGTSGSSSMKFLSVGSQFSTSLATLMKTISTTTPHYVRCIKPNPEKLPQTF 716

Query: 282  ENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSS---------- 331
              ++V+ QLRCGGVME++RI CAG+PTR+   EF  R+ IL  K ++  S          
Sbjct: 717  NKQDVIHQLRCGGVMESVRICCAGFPTRRLLSEFYQRYKILYVKDINTGSGGGKKGSNNN 776

Query: 332  ---DEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVR 386
               D     + LL  + L  + Y+IG TKVFLRAGQ+A L+  R E L RSA++IQ++ +
Sbjct: 777  KIKDPKILVQNLLTGIELSDDKYKIGLTKVFLRAGQLASLEDMRLEQLDRSATVIQKRWK 836

Query: 387  SYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMC 446
             YL RK Y  LR +++ IQ   R   A+    +++R  S + IQ+  R +  +  Y+ + 
Sbjct: 837  GYLYRKRYKQLRDASLIIQTKLRSVHAKQQLSALQRTHSAILIQKVWRAHRDRVQYQKIR 896

Query: 447  FSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRG 506
             +++ +QT MR      ++   R   A+I++Q+  R+ L++    K  +  I  Q  WR 
Sbjct: 897  DASLQLQTVMRRHLFSEQVHRERCENAAIILQTKIRQILSKREVDKKLRGIILIQARWRM 956

Query: 507  KVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQ------ 560
            K+A+R   +L+  AR    +Q  KNKL++++EEL WRL  E + +  +E+ K +      
Sbjct: 957  KLAKRVYIQLRAEARSLRTVQEQKNKLQEKLEELQWRLTSEAKRKQQLEDQKVKSDTTIS 1016

Query: 561  ----ENAKLQSALQEMQLQFKE 578
                 N  L+  L E+QL+++E
Sbjct: 1017 ELSSNNDHLELQLSEIQLKYQE 1038
Processive motor protein that can move over long distances along F-actin without disassociating; processiveness depends on high physiological Mg(2+) concentrations. Presents a high actin affinity in the presence of ADP, fast ATP hydrolysis, and a high steady-state ATPase activity in the presence of actin that is rate limited by ADP release. Physiological decrease of free Mg(2+) ions leads to an increased rate of ADP release and shortening of the fraction of time it spends in the strong acting binding states.
Dictyostelium discoideum (taxid: 44689)
>sp|Q02440|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1 Back     alignment and function description
>sp|Q9Y4I1|MYO5A_HUMAN Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2 Back     alignment and function description
>sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2 Back     alignment and function description
>sp|Q9QYF3|MYO5A_RAT Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1 Back     alignment and function description
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2 Back     alignment and function description
>sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3 Back     alignment and function description
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1 Back     alignment and function description
>sp|Q876G9|MYO2_SACBA Myosin-2 OS=Saccharomyces bayanus GN=MYO2 PE=3 SV=2 Back     alignment and function description
>sp|Q875X3|MYO2A_NAUCC Myosin-2A OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) GN=MYO2A PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1122
224070005 1513 predicted protein [Populus trichocarpa] 0.989 0.733 0.881 0.0
356545924 1549 PREDICTED: myosin-J heavy chain-like [Gl 0.988 0.715 0.837 0.0
297744256 1540 unnamed protein product [Vitis vinifera] 0.992 0.723 0.833 0.0
225437918 1518 PREDICTED: myosin-H heavy chain [Vitis v 0.992 0.733 0.833 0.0
356536864 1611 PREDICTED: myosin-J heavy chain-like [Gl 0.981 0.683 0.835 0.0
116047943 1512 myosin XI-2 [Nicotiana benthamiana] 0.987 0.732 0.828 0.0
29170491 1362 myosin XI [Nicotiana tabacum] 0.981 0.808 0.819 0.0
356505090 1519 PREDICTED: myosin-Va-like [Glycine max] 0.985 0.728 0.814 0.0
356572313 1527 PREDICTED: myosin-H heavy chain-like [Gl 0.987 0.725 0.812 0.0
449445648 1508 PREDICTED: myosin-H heavy chain-like [Cu 0.982 0.730 0.806 0.0
>gi|224070005|ref|XP_002303100.1| predicted protein [Populus trichocarpa] gi|222844826|gb|EEE82373.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 2030 bits (5259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 979/1111 (88%), Positives = 1050/1111 (94%), Gaps = 1/1111 (0%)

Query: 1    MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
            MCD+KALEDSLCKR IVTRDETITKWLDPE+AAVSRDALAK+VYSRLFDWLV+KIN+SIG
Sbjct: 362  MCDSKALEDSLCKRVIVTRDETITKWLDPESAAVSRDALAKVVYSRLFDWLVDKINSSIG 421

Query: 61   QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
            QDP+SK LIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEY+KE I+W
Sbjct: 422  QDPHSKYLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDW 481

Query: 121  SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLA 180
            SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRF+KPKLA
Sbjct: 482  SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFAKPKLA 541

Query: 181  RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240
            RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQAL+ ASKCSFVS LF PLAEESSK SK
Sbjct: 542  RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALMGASKCSFVSGLFPPLAEESSKQSK 601

Query: 241  FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300
            FSSIGSRFKQQLQ LLETLS++EPHYIRCVKPNNLLKPAIFENKN LQQLRCGGVMEAIR
Sbjct: 602  FSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNALQQLRCGGVMEAIR 661

Query: 301  ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRA 360
            ISCAG+PTRK FDEFVDRFG+LA +VLDGSSDEVTACKRLLEKVGL GYQIGKTKVFLRA
Sbjct: 662  ISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVTACKRLLEKVGLTGYQIGKTKVFLRA 721

Query: 361  GQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESM 420
            GQMA+LDARR+EVLGRSASIIQRKVRSYLSR+++I LRRSAI IQ+ACRGQ+AR VYE+M
Sbjct: 722  GQMAELDARRSEVLGRSASIIQRKVRSYLSRRSFITLRRSAIQIQSACRGQIARHVYENM 781

Query: 421  RREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSH 480
            RREA+ LRIQRDLRMY+A+KAYKD+C+SA+ IQTGMRGMAAR++LRFRRQTRA+I+IQS 
Sbjct: 782  RREAASLRIQRDLRMYIARKAYKDLCYSAISIQTGMRGMAARDDLRFRRQTRAAIMIQSQ 841

Query: 481  CRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEEL 540
            CRKYLARLHY KLKKAAITTQCAWRG+VAR+ELR LKMAARETGALQAAKNKLEKQVEEL
Sbjct: 842  CRKYLARLHYKKLKKAAITTQCAWRGRVARKELRNLKMAARETGALQAAKNKLEKQVEEL 901

Query: 541  TWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVV 600
            TWRLQLEKRMR D+EEAKTQENAKLQSALQEMQLQFKE+KE L+KE E A K  EKVPV+
Sbjct: 902  TWRLQLEKRMRADVEEAKTQENAKLQSALQEMQLQFKETKEMLVKEREAAIKVTEKVPVI 961

Query: 601  QEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660
            QEVPV+DH  +E+LT ENEKLK LV+SLEKKIDETEKKFEETS+ISEERLKQALEAESKI
Sbjct: 962  QEVPVVDHVALEKLTIENEKLKALVTSLEKKIDETEKKFEETSRISEERLKQALEAESKI 1021

Query: 661  VQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENI 720
            V+LKTAMHRLEEK SD+ETENQ+LRQQ LL TP KK+SE    P TQSLENGHH+ +EN 
Sbjct: 1022 VELKTAMHRLEEKFSDIETENQVLRQQGLLQTPAKKLSERPPIPPTQSLENGHHLNDENK 1081

Query: 721  SNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKC 780
            +NEPQSATPVK  GTESDSK RRSHIE QHEN+DALI+CV  N+G+ +GKPVAA TIY+C
Sbjct: 1082 ANEPQSATPVKTYGTESDSKFRRSHIERQHENIDALISCVTNNIGFSHGKPVAALTIYRC 1141

Query: 781  LLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASG 840
            LLHWKSFEAERTSVFDRLIQMIGSAIENE++N+HMAYWLSNTSTLLFLLQRS+KAAGAS 
Sbjct: 1142 LLHWKSFEAERTSVFDRLIQMIGSAIENEENNEHMAYWLSNTSTLLFLLQRSIKAAGAS- 1200

Query: 841  ATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVE 900
            ATP +KPP+ATSLFGRM MGFRSSPSS+NLAAAAALAVVRQVEAKYPALLFKQQLAAYVE
Sbjct: 1201 ATPQRKPPSATSLFGRMTMGFRSSPSSSNLAAAAALAVVRQVEAKYPALLFKQQLAAYVE 1260

Query: 901  KIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLS 960
            KIYGIIRDNLKKEL+SLLSLCIQAPRTSKGSVLRSGRSFGKDS  SHWQSI+DSLNTLLS
Sbjct: 1261 KIYGIIRDNLKKELASLLSLCIQAPRTSKGSVLRSGRSFGKDSPLSHWQSIVDSLNTLLS 1320

Query: 961  TLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQA 1020
            TLKQNFVPPVL+QKI+TQTFSYINVQLFNSLLLRRECCTFSNGEYVK+GLAELELW  QA
Sbjct: 1321 TLKQNFVPPVLIQKIYTQTFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWSAQA 1380

Query: 1021 KEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNY 1080
            KEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNY
Sbjct: 1381 KEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNY 1440

Query: 1081 NTRSVSPNVISSMRILMTEDSNDATSNSFFV 1111
            NTRSVSP VISSMR+LMTEDSN A SNSF +
Sbjct: 1441 NTRSVSPGVISSMRVLMTEDSNSAVSNSFLL 1471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356545924|ref|XP_003541383.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|297744256|emb|CBI37226.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437918|ref|XP_002268099.1| PREDICTED: myosin-H heavy chain [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536864|ref|XP_003536953.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|116047943|gb|ABJ53197.1| myosin XI-2 [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|29170491|dbj|BAC66162.1| myosin XI [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356505090|ref|XP_003521325.1| PREDICTED: myosin-Va-like [Glycine max] Back     alignment and taxonomy information
>gi|356572313|ref|XP_003554313.1| PREDICTED: myosin-H heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|449445648|ref|XP_004140584.1| PREDICTED: myosin-H heavy chain-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1122
TAIR|locus:20202701500 XIB "myosin XI B" [Arabidopsis 0.975 0.729 0.712 0.0
TAIR|locus:21177681516 XIH [Arabidopsis thaliana (tax 0.979 0.724 0.683 0.0
TAIR|locus:21994491529 XIE [Arabidopsis thaliana (tax 0.987 0.724 0.579 0.0
TAIR|locus:20255351538 XIC [Arabidopsis thaliana (tax 0.987 0.720 0.576 0.0
TAIR|locus:21499321545 XIK [Arabidopsis thaliana (tax 0.982 0.713 0.577 0.0
TAIR|locus:20079381520 MYA1 "myosin 1" [Arabidopsis t 0.977 0.721 0.542 0.0
TAIR|locus:20390071493 XIG "myosin-like protein XIG" 0.760 0.571 0.647 0.0
TAIR|locus:2046570 1770 XID "myosin XI D" [Arabidopsis 0.638 0.404 0.612 2.4e-281
TAIR|locus:21259291522 XI-I [Arabidopsis thaliana (ta 0.969 0.714 0.487 1.7e-279
TAIR|locus:2197773 1730 XIA "myosin XI A" [Arabidopsis 0.712 0.461 0.562 2.1e-277
TAIR|locus:2020270 XIB "myosin XI B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4058 (1433.5 bits), Expect = 0., P = 0.
 Identities = 790/1108 (71%), Positives = 902/1108 (81%)

Query:     1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
             MC+ K+LEDSLCKR + TRDETITK LDPEAA +SRDALAK++YSRLFDWLVEKIN SIG
Sbjct:   363 MCNEKSLEDSLCKRIMATRDETITKTLDPEAALLSRDALAKVMYSRLFDWLVEKINTSIG 422

Query:    61 QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
             QDP+SK LIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEY KE INW
Sbjct:   423 QDPDSKYLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEINW 482

Query:   121 SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLA 180
             SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQT+KNHKRF+KPKLA
Sbjct:   483 SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTYKNHKRFTKPKLA 542

Query:   181 RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEEXXXXXX 240
             RSDFTICHYAGDVTYQTELFLDKNKDYV+AEHQALL+AS CSFV++LF P++++      
Sbjct:   543 RSDFTICHYAGDVTYQTELFLDKNKDYVIAEHQALLNASTCSFVANLFPPVSDDSKQSKF 602

Query:   241 XXXXXXRFKXXXXXXXXXXXXXXPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300
                   RFK              PHYIRC+KPNNLLKP IFEN+NVLQQLRCGGVMEAIR
Sbjct:   603 SSIGT-RFKQQLVSLLEILNTTEPHYIRCIKPNNLLKPGIFENQNVLQQLRCGGVMEAIR 661

Query:   301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRA 360
             ISCAGYPTRK FDEF++RFGI+A +VLD +S+E  ACK+LL+K GLEGYQIGK+KVFLRA
Sbjct:   662 ISCAGYPTRKHFDEFLNRFGIIAPQVLDKNSNEPAACKKLLDKAGLEGYQIGKSKVFLRA 721

Query:   361 GQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESM 420
             GQMADLD RRTE+LGRSASIIQRKVRSYL++K +I LR SA  IQA CRG LAR++YE M
Sbjct:   722 GQMADLDTRRTEILGRSASIIQRKVRSYLAQKTFIQLRISATQIQAVCRGYLARSIYEGM 781

Query:   421 RREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSH 480
             RREA+ L+IQRDLR +LA+KAY ++  + + IQ GMRGM +R EL  RRQT+A+ +IQ+ 
Sbjct:   782 RREAAALKIQRDLRKFLARKAYTELFSATILIQAGMRGMVSRKELCLRRQTKAATIIQTR 841

Query:   481 CRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEEL 540
             CR YLARLHY KLKKAAITTQCAWRGKVAR+EL+ LKMAARETGALQ AKNKLEKQVEEL
Sbjct:   842 CRVYLARLHYRKLKKAAITTQCAWRGKVARKELKNLKMAARETGALQEAKNKLEKQVEEL 901

Query:   541 TWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMXXXXXXXXXXXXXXXX 600
             TWRLQLEKRMR D+EEAK QENAK +S+L+E+Q +FKE++  L+                
Sbjct:   902 TWRLQLEKRMRTDLEEAKKQENAKYESSLEEIQNKFKETEALLIKEREAAKTVSEVLPII 961

Query:   601 XXXXXXDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660
                   D  ++E+LT+ENEKLK +VSSLE KIDET K+  ET++IS++RLKQAL AESK+
Sbjct:   962 KEVPVVDQELMEKLTNENEKLKGMVSSLEIKIDETAKELHETARISQDRLKQALAAESKV 1021

Query:   661 VQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENI 720
              +LKTAM RLEEK+SDMETE QI+ QQ++L+TP+K ++ H      ++LENGH    EN 
Sbjct:  1022 AKLKTAMQRLEEKISDMETEKQIMLQQTILNTPVKSVAGHPPTATIKNLENGHRTNLENQ 1081

Query:   721 SNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKC 780
              NE            E +    +S  E Q ENVD LI+CV +N+G+ NGKP+AAFTIYKC
Sbjct:  1082 FNE-----------VEVNGNAGKSAAERQLENVDTLIDCVKENIGFSNGKPIAAFTIYKC 1130

Query:   781 LLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASG 840
             LLHWK FE+E+TS FDRLI+MIGSAIENEDDN H+AYWL+NTS LLFLLQ+SLK AGA G
Sbjct:  1131 LLHWKCFESEKTSAFDRLIEMIGSAIENEDDNGHLAYWLTNTSALLFLLQKSLKPAGA-G 1189

Query:   841 ATPHKKPPTATSLFGRMAMGFRXXXXXXXXXXXXXXXVVRQVEAKYPALLFKQQLAAYVE 900
             AT  KKPP  TSLFGRMA+ FR               V+R VEAKYPALLFKQQLAAYVE
Sbjct:  1190 ATASKKPPITTSLFGRMALSFRSSPNLAAAAEAAALAVIRPVEAKYPALLFKQQLAAYVE 1249

Query:   901 KIYGIIRDNLKKEXXXXXXXCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLS 960
             KI+G+IRDNLKKE       CIQAPR SKG + RS RS GKDS + HWQSIID LN+LL+
Sbjct:  1250 KIFGMIRDNLKKELSALISMCIQAPRISKGGIQRSARSLGKDSPAIHWQSIIDGLNSLLA 1309

Query:   961 TLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQA 1020
              LK N+VP VL+QKI TQTFS++NVQLFNSLLLR+ECCTFSNGE+VK+GLAELELWC Q 
Sbjct:  1310 ILKDNYVPLVLIQKIHTQTFSFVNVQLFNSLLLRKECCTFSNGEFVKSGLAELELWCGQV 1369

Query:  1021 KEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNY 1080
              E YAG SWDELKHIRQAVGFLVIHQKYR+SYD+I +DLCPILSVQQLYRICTLYWDD Y
Sbjct:  1370 NE-YAGPSWDELKHIRQAVGFLVIHQKYRVSYDDIVHDLCPILSVQQLYRICTLYWDDCY 1428

Query:  1081 NTRSVSPNVISSMRILMTEDSNDATSNS 1108
             NTRSVS  VISSMR LMTE+SNDA SNS
Sbjct:  1429 NTRSVSQEVISSMRALMTEESNDADSNS 1456
GO:0003774 "motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016459 "myosin complex" evidence=IEA
GO:0030048 "actin filament-based movement" evidence=RCA;TAS
GO:0048767 "root hair elongation" evidence=IGI
GO:0051645 "Golgi localization" evidence=RCA
GO:0051646 "mitochondrion localization" evidence=RCA
GO:0060151 "peroxisome localization" evidence=RCA
TAIR|locus:2117768 XIH [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199449 XIE [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025535 XIC [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149932 XIK [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007938 MYA1 "myosin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039007 XIG "myosin-like protein XIG" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046570 XID "myosin XI D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125929 XI-I [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197773 XIA "myosin XI A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002589
hypothetical protein (1513 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1122
cd01384674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 0.0
smart00242677 smart00242, MYSc, Myosin 0.0
cd00124679 cd00124, MYSc, Myosin motor domain 1e-159
COG50221463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 1e-157
cd01380691 cd01380, MYSc_type_V, Myosin motor domain, type V 1e-145
pfam00063679 pfam00063, Myosin_head, Myosin head (motor domain) 1e-137
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-133
cd01378674 cd01378, MYSc_type_I, Myosin motor domain, type I 1e-124
cd01381671 cd01381, MYSc_type_VII, Myosin motor domain, type 1e-119
cd01383677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 1e-109
cd01382717 cd01382, MYSc_type_VI, Myosin motor domain, type V 1e-88
cd01385692 cd01385, MYSc_type_IX, Myosin motor domain, type I 2e-85
cd01379653 cd01379, MYSc_type_III, Myosin motor domain, type 6e-85
cd01387677 cd01387, MYSc_type_XV, Myosin motor domain, type X 9e-85
PTZ00014821 PTZ00014, PTZ00014, myosin-A; Provisional 4e-77
pfam01843105 pfam01843, DIL, DIL domain 8e-43
cd01386767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 4e-20
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 3e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-05
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 9e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
COG1340294 COG1340, COG1340, Uncharacterized archaeal coiled- 3e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 5e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 8e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.001
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.001
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.002
pfam07926132 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein 0.002
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.002
pfam09731493 pfam09731, Mitofilin, Mitochondrial inner membrane 0.002
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 0.002
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.002
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.003
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 0.003
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information 
 Score =  787 bits (2034), Expect = 0.0
 Identities = 312/374 (83%), Positives = 350/374 (93%)

Query: 1   MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
           MCD KALED+LCKR +VT +E ITK LDP++A +SRDALAK +YSRLFDWLV KIN+SIG
Sbjct: 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIG 360

Query: 61  QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
           QDP+SKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEY+KE I+W
Sbjct: 361 QDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDW 420

Query: 121 SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLA 180
           SYIEFVDNQD+LDLIEKKPGGIIALLDEACMFP+STHETFAQKLYQTFK+HKRF KPKL+
Sbjct: 421 SYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480

Query: 181 RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240
           R+ FTI HYAGDVTYQT+ FLDKNKDYVVAEHQALL+AS CSFV+ LF PL EE+SK+SK
Sbjct: 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540

Query: 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300
           FSSIGSRFKQQLQ L+ETLS++EPHYIRC+KPNN+LKP IFEN+NVLQQLRCGGV+EAIR
Sbjct: 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIR 600

Query: 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRA 360
           ISCAGYPTR+ FDEF+DRFGILA +VL GSSD+  ACK++L+K+GL+GYQIGKTKVFLRA
Sbjct: 601 ISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRA 660

Query: 361 GQMADLDARRTEVL 374
           GQMA+LDARRTEVL
Sbjct: 661 GQMAELDARRTEVL 674

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|216736 pfam01843, DIL, DIL domain Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1122
COG50221463 Myosin heavy chain [Cytoskeleton] 100.0
PTZ00014821 myosin-A; Provisional 100.0
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 100.0
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 100.0
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 100.0
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 100.0
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 100.0
KOG01621106 consensus Myosin class I heavy chain [Cytoskeleton 100.0
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 100.0
PF00063689 Myosin_head: Myosin head (motor domain); InterPro: 100.0
KOG42291062 consensus Myosin VII, myosin IXB and related myosi 100.0
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 100.0
PF01843105 DIL: DIL domain; InterPro: IPR018444 Dilute encode 99.95
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 99.04
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 98.31
KOG0520975 consensus Uncharacterized conserved protein, conta 98.26
COG50221463 Myosin heavy chain [Cytoskeleton] 98.06
KOG42291062 consensus Myosin VII, myosin IXB and related myosi 97.97
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.94
KOG0520975 consensus Uncharacterized conserved protein, conta 97.76
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 97.61
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.52
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.44
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.35
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 97.32
KOG09961293 consensus Structural maintenance of chromosome pro 97.31
PRK11637428 AmiB activator; Provisional 97.28
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.22
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.12
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.11
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 97.0
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 96.97
PRK04863 1486 mukB cell division protein MukB; Provisional 96.95
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.87
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 96.86
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.83
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.8
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 96.79
PRK11637428 AmiB activator; Provisional 96.77
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 96.67
KOG09331174 consensus Structural maintenance of chromosome pro 96.67
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.58
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.57
KOG09331174 consensus Structural maintenance of chromosome pro 96.56
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.49
KOG2128 1401 consensus Ras GTPase-activating protein family - I 96.46
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.44
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.43
PRK02224880 chromosome segregation protein; Provisional 96.42
PRK02224880 chromosome segregation protein; Provisional 96.36
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.35
PRK09039343 hypothetical protein; Validated 96.32
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.27
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 96.27
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.16
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.07
PHA02562562 46 endonuclease subunit; Provisional 96.04
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 95.99
PRK04863 1486 mukB cell division protein MukB; Provisional 95.98
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.98
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 95.96
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 95.93
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.91
PRK03918880 chromosome segregation protein; Provisional 95.8
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 95.74
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.71
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 95.65
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 95.61
PF15066527 CAGE1: Cancer-associated gene protein 1 family 95.6
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 95.53
smart0001526 IQ Short calmodulin-binding motif containing conse 95.49
COG3883265 Uncharacterized protein conserved in bacteria [Fun 95.48
PRK09039343 hypothetical protein; Validated 95.47
PF15397258 DUF4618: Domain of unknown function (DUF4618) 95.42
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.4
PHA02562562 46 endonuclease subunit; Provisional 95.24
PRK03918880 chromosome segregation protein; Provisional 95.22
TIGR006061311 rad50 rad50. This family is based on the phylogeno 95.21
KOG4673961 consensus Transcription factor TMF, TATA element m 95.17
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 95.13
KOG0018 1141 consensus Structural maintenance of chromosome pro 95.12
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.05
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 95.0
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 94.97
KOG0977546 consensus Nuclear envelope protein lamin, intermed 94.94
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 94.87
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 94.85
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 94.8
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.78
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.75
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 94.75
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.68
KOG1003205 consensus Actin filament-coating protein tropomyos 94.65
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 94.61
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 94.6
smart0001526 IQ Short calmodulin-binding motif containing conse 94.57
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.53
PF10174775 Cast: RIM-binding protein of the cytomatrix active 94.5
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 94.43
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 94.36
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 94.29
KOG1103561 consensus Predicted coiled-coil protein [Function 94.25
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 94.2
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 94.13
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 94.13
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 94.04
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 94.03
COG4372499 Uncharacterized protein conserved in bacteria with 94.0
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 93.98
PTZ00014821 myosin-A; Provisional 93.86
COG3883265 Uncharacterized protein conserved in bacteria [Fun 93.68
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.61
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.54
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 93.24
KOG0963629 consensus Transcription factor/CCAAT displacement 93.22
KOG0249916 consensus LAR-interacting protein and related prot 93.12
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 93.09
KOG2128 1401 consensus Ras GTPase-activating protein family - I 93.07
PF13851201 GAS: Growth-arrest specific micro-tubule binding 93.06
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 93.02
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 92.98
PRK04778569 septation ring formation regulator EzrA; Provision 92.93
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 92.82
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 92.78
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 92.73
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 92.71
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.58
KOG09791072 consensus Structural maintenance of chromosome pro 92.37
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 92.34
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 92.32
COG2433652 Uncharacterized conserved protein [Function unknow 92.3
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 92.27
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 92.27
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 92.12
PF13870177 DUF4201: Domain of unknown function (DUF4201) 92.12
PF05701522 WEMBL: Weak chloroplast movement under blue light; 92.09
KOG2991330 consensus Splicing regulator [RNA processing and m 91.53
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 91.51
PRK10884206 SH3 domain-containing protein; Provisional 91.45
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 91.36
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 91.24
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 91.13
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 90.91
PRK01156895 chromosome segregation protein; Provisional 90.9
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 90.74
KOG1899861 consensus LAR transmembrane tyrosine phosphatase-i 90.65
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 90.49
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 90.42
KOG1003205 consensus Actin filament-coating protein tropomyos 90.42
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 90.38
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 90.31
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 90.0
KOG4673961 consensus Transcription factor TMF, TATA element m 89.81
PRK10884206 SH3 domain-containing protein; Provisional 89.81
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 89.75
PF00038312 Filament: Intermediate filament protein; InterPro: 89.64
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 89.62
PLN02939 977 transferase, transferring glycosyl groups 89.54
PF05010207 TACC: Transforming acidic coiled-coil-containing p 89.4
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 89.4
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 89.38
TIGR026801353 conserved hypothetical protein TIGR02680. Members 89.34
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 89.2
KOG0964 1200 consensus Structural maintenance of chromosome pro 89.15
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 89.01
KOG09791072 consensus Structural maintenance of chromosome pro 88.95
COG4026290 Uncharacterized protein containing TOPRIM domain, 88.93
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 88.84
COG4026290 Uncharacterized protein containing TOPRIM domain, 88.83
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 88.67
PF135141111 AAA_27: AAA domain 88.37
PRK10361475 DNA recombination protein RmuC; Provisional 87.93
PRK11281 1113 hypothetical protein; Provisional 87.88
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 87.83
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 87.75
KOG1962216 consensus B-cell receptor-associated protein and r 87.74
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 87.71
KOG4809654 consensus Rab6 GTPase-interacting protein involved 87.47
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 87.46
COG2433652 Uncharacterized conserved protein [Function unknow 87.4
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 87.33
PRK10929 1109 putative mechanosensitive channel protein; Provisi 87.24
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 87.1
COG5185622 HEC1 Protein involved in chromosome segregation, i 86.97
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 86.93
COG4942420 Membrane-bound metallopeptidase [Cell division and 86.79
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 86.75
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 86.5
PF10174775 Cast: RIM-binding protein of the cytomatrix active 86.5
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 86.4
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 86.36
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 86.27
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 86.17
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 86.05
PF10186302 Atg14: UV radiation resistance protein and autopha 86.05
PF10186302 Atg14: UV radiation resistance protein and autopha 85.99
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 85.94
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 85.93
COG307479 Uncharacterized protein conserved in bacteria [Fun 85.73
PF13851201 GAS: Growth-arrest specific micro-tubule binding 85.69
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 85.56
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 85.41
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 85.37
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 85.36
KOG1937521 consensus Uncharacterized conserved protein [Funct 85.05
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 84.95
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 84.93
PF10205102 KLRAQ: Predicted coiled-coil domain-containing pro 84.81
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 84.38
KOG1962216 consensus B-cell receptor-associated protein and r 84.26
COG4372499 Uncharacterized protein conserved in bacteria with 84.12
COG0497557 RecN ATPase involved in DNA repair [DNA replicatio 84.06
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.55
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 83.42
PF13870177 DUF4201: Domain of unknown function (DUF4201) 83.0
TIGR00634563 recN DNA repair protein RecN. All proteins in this 82.91
PF07889126 DUF1664: Protein of unknown function (DUF1664); In 82.16
PF09738302 DUF2051: Double stranded RNA binding protein (DUF2 82.13
KOG0249 916 consensus LAR-interacting protein and related prot 82.05
PF00038312 Filament: Intermediate filament protein; InterPro: 81.95
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 81.64
KOG2891445 consensus Surface glycoprotein [General function p 81.54
TIGR02977219 phageshock_pspA phage shock protein A. Members of 81.26
PF15066527 CAGE1: Cancer-associated gene protein 1 family 81.19
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 81.08
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 80.88
PRK11281 1113 hypothetical protein; Provisional 80.85
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 80.84
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 80.83
PRK1542279 septal ring assembly protein ZapB; Provisional 80.6
KOG4302660 consensus Microtubule-associated protein essential 80.52
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 80.31
PF13514 1111 AAA_27: AAA domain 80.2
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 80.03
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-138  Score=1262.16  Aligned_cols=1009  Identities=31%  Similarity=0.433  Sum_probs=743.8

Q ss_pred             CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214            1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF   80 (1122)
Q Consensus         1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f   80 (1122)
                      |||++.|.+||++|.+.++||.|.+|+|..||..+||||||+||++||+|||++||.+|+.++...+|||||||||||+|
T Consensus       362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF  441 (1463)
T COG5022         362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF  441 (1463)
T ss_pred             CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence            89999999999999999999999999999999999999999999999999999999999887767899999999999999


Q ss_pred             CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhhhhHhhhcCCCCChHH
Q 001214           81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET  159 (1122)
Q Consensus        81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~-~~~Gil~lLdee~~~p~~~d~~  159 (1122)
                      +.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.|||++
T Consensus       442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s  521 (1463)
T COG5022         442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES  521 (1463)
T ss_pred             ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence            999999999999999999999999999999999999999999999999999999998 2459999999999999999999


Q ss_pred             HHHHHHHHhc--CCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccC
Q 001214          160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK  237 (1122)
Q Consensus       160 ~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~  237 (1122)
                      |.+||++.+.  +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+|++.||+..... .+
T Consensus       522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~-~~  600 (1463)
T COG5022         522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENI-ES  600 (1463)
T ss_pred             HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhc-cc
Confidence            9999999886  56899999999999999999999999999999999999999999999999999999999954333 33


Q ss_pred             CCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHH
Q 001214          238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD  317 (1122)
Q Consensus       238 ~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~  317 (1122)
                      .++++|+|+.|+.||..||++|++|+||||||||||.+|+|+.||+.+|++|||||||+|+|||+|+|||+||+|++|+.
T Consensus       601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~  680 (1463)
T COG5022         601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ  680 (1463)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccCC-----CCcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHHHHHHHhhhccc
Q 001214          318 RFGILASKVLD-----GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS  390 (1122)
Q Consensus       318 ry~~l~~~~~~-----~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~~~  390 (1122)
                      ||++|.|....     ...|.+.+|..||..+.+|  .||+|+||||||+|+++.||.+|+..++.+++.||++|||++.
T Consensus       681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~  760 (1463)
T COG5022         681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL  760 (1463)
T ss_pred             HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997432     2247899999999998776  6999999999999999999999999999999999999999999


Q ss_pred             chhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHH
Q 001214          391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR  469 (1122)
Q Consensus       391 R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ-s~~Rg~~aR~~~~~~~  469 (1122)
                      |++|.+..+.+..+|...+|+..++....--...+++.+|..||....|+.|...-..+..+| ..++....+.......
T Consensus       761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~  840 (1463)
T COG5022         761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF  840 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999999877766666799999999999999999999999999999 7777777777666777


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214          470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR  549 (1122)
Q Consensus       470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~  549 (1122)
                      ..++++.+|++||.+..+++|..+.+.++.+|+.+|...|++++..++.+.+++..+.....+|+.++.++...+.-...
T Consensus       841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~  920 (1463)
T COG5022         841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI  920 (1463)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999776652111


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh---hHHHHHHHHHHHHHHHHHHH
Q 001214          550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS  626 (1122)
Q Consensus       550 ~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~---~~~~~~~L~~e~~kLe~~l~  626 (1122)
                      .+..+   +.+....|++-+...+                          +++.+..   ....+..+.....+|++...
T Consensus       921 ~~~~~---k~e~~a~lk~~l~~~d--------------------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  971 (1463)
T COG5022         921 ENLEF---KTELIARLKKLLNNID--------------------------LEEGPSIEYVKLPELNKLHEVESKLKETSE  971 (1463)
T ss_pred             hhhHH---HHHHHHHHHHHhhccc--------------------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            11100   0011112211111100                          0000000   11133444444444444433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhhcccCcccccccccCC
Q 001214          627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA  703 (1122)
Q Consensus       627 ~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e---~~~l~q~~~~~~~~~~~~~~~~~  703 (1122)
                      +....+...+....+......+    +....+.+..+..+...+++....+++.   +..+....-..+   .....++.
T Consensus       972 ~~~~~~k~~~~~~~~~~~~~~e----l~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~~~~~ 1044 (1463)
T COG5022         972 EYEDLLKKSTILVREGNKANSE----LKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SESTELSI 1044 (1463)
T ss_pred             HHHHHHHHhhHHHHhcccHHHH----HHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchhhhhc
Confidence            3332222222222222111111    1111111111111112222222222222   222222100000   00000000


Q ss_pred             ccc-cccCC-CCcccccccCCCCCCCCCCccCCCcchHHHHhhhhHhhhhcHHHHHHhhh-hcCCCC-CCCCchHHHH-H
Q 001214          704 PAT-QSLEN-GHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFTI-Y  778 (1122)
Q Consensus       704 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~~~i~-~~~~~~-~~~p~~A~il-~  778 (1122)
                      ... ....+ ..+.........    ....... +..  ..-....+..+....+++.+. .++.+. ...+.||..+ +
T Consensus      1045 ~~~~~~~~~~~~~~~~~l~~~~----~~l~~~r-~~~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1117 (1463)
T COG5022        1045 LKPLQKLKGLLLLENNQLQARY----KALKLRR-ENS--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQF 1117 (1463)
T ss_pred             cCcccchhhhhhHHHHHhhhhH----hhhhhcC-ccc--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHH
Confidence            000 00000 000000000000    0000000 000  000001233344455555544 322221 1222345443 3


Q ss_pred             HHHhhhcc-chhhhhHHHHHHHHHHHHhhcc---cCCCcchhhHHHhHHHHHHHHHHhhhhcCCCCCCCCCCCCCccchh
Q 001214          779 KCLLHWKS-FEAERTSVFDRLIQMIGSAIEN---EDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLF  854 (1122)
Q Consensus       779 ~c~~~~~~-~~~~~~~ll~~i~~~i~~~i~~---~~d~~~l~fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~  854 (1122)
                      ...-+|+. +..+...++...+..++.+...   .+-...+.||.+|...+++.---       ....+++      .+.
T Consensus      1118 ~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~ 1184 (1463)
T COG5022        1118 IVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPF-------AALSEKR------LYQ 1184 (1463)
T ss_pred             HHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCch-------hhcchhh------hhH
Confidence            33446665 5556666777666666666442   23445678999999887631000       0000000      000


Q ss_pred             hhhhcccCCCCcchhhhhHHhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh----h---cCCCC
Q 001214          855 GRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLC----I---QAPRT  927 (1122)
Q Consensus       855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~l~~~~~~iy~~l~~~~~~~l~~~L~~~----i---~~~~~  927 (1122)
                      ..+-+ +.+.    ..     ...   |      -..+..+..+..++|+.|....  .+.+++...    .   ..+++
T Consensus      1185 ~~~~d-~~~~----~s-----~s~---v------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~ 1243 (1463)
T COG5022        1185 SALYD-EKSK----LS-----SSE---V------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGF 1243 (1463)
T ss_pred             hhhhc-cccc----cc-----HHH---H------HHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhccccccc
Confidence            00000 0000    00     111   1      1344667777888888887654  233333211    1   11111


Q ss_pred             CCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCCccchhHHh
Q 001214          928 SKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVK 1007 (1122)
Q Consensus       928 ~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr 1007 (1122)
                      ..      +...+..+...+.++++.+++.+.++++.+.+.+.+..-.+.++.-++|+.+||.|.++..-..|+.|-++.
T Consensus      1244 ~~------~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~ 1317 (1463)
T COG5022        1244 NN------LNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVN 1317 (1463)
T ss_pred             cc------hhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhccccc
Confidence            10      112222455678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHhhcccccccccHHHhHHHHHHHhHhhhcccccCCHHHHHhccCcCCCHHHHHHHHhccccCCCCCCCCCH
Q 001214         1008 AGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSP 1087 (1122)
Q Consensus      1008 ~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Qi~~il~~Y~~d~~e~~~v~~ 1087 (1122)
                      +|.+.+.+||+.+|   ...+..+|++++||++.+++.+++..+++++ .+.|.+|+|.|+.+|+.+|.|.++|+ ++|.
T Consensus      1318 ~n~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e~-~l~k 1392 (1463)
T COG5022        1318 YNSEELDDWCREFE---ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKEN-NLPK 1392 (1463)
T ss_pred             ccchhhhHHHHhhc---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhcccC-CChH
Confidence            99999999999988   3556689999999999999987777767666 69999999999999999999999985 9999


Q ss_pred             HHHHHHHHHhh
Q 001214         1088 NVISSMRILMT 1098 (1122)
Q Consensus      1088 ~~i~~l~~~~~ 1098 (1122)
                      ++..+|.+...
T Consensus      1393 e~~~~~~a~~~ 1403 (1463)
T COG5022        1393 EILKKIEALLI 1403 (1463)
T ss_pred             HHHHHHhhhhh
Confidence            99966654443

>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function Back     alignment and domain information
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1122
2dfs_A1080 3-D Structure Of Myosin-V Inhibited State Length = 1e-113
1oe9_A795 Crystal Structure Of Myosin V Motor With Essential 9e-86
1w8j_A766 Crystal Structure Of Myosin V Motor Domain - Nucleo 2e-80
1w9j_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-78
1g8x_A1010 Structure Of A Genetically Engineered Molecular Mot 4e-78
1w9i_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 9e-78
2aka_A776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 3e-77
1d0x_A761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 3e-77
2jhr_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-77
1jwy_A776 Crystal Structure Of The Dynamin A Gtpase Domain Co 3e-77
3mnq_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-77
1yv3_A762 The Structural Basis Of Blebbistatin Inhibition And 3e-77
3myh_X762 Insights Into The Importance Of Hydrogen Bonding In 3e-77
2xel_A776 Molecular Mechanism Of Pentachloropseudilin Mediate 3e-77
1fmv_A761 Crystal Structure Of The Apo Motor Domain Of Dictyo 4e-77
1w9l_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 5e-77
1mma_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 9e-77
2xo8_A776 Crystal Structure Of Myosin-2 In Complex With Tribr 9e-77
1mmd_A762 Truncated Head Of Myosin From Dictyostelium Discoid 1e-76
2y0r_X758 Structural Basis For The Allosteric Interference Of 1e-76
1w9k_A770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 3e-76
2y9e_X758 Structural Basis For The Allosteric Interference Of 4e-76
1mmg_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 1e-75
1mmn_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-75
1lvk_A762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 8e-75
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 6e-74
1b7t_A835 Myosin Digested By Papain Length = 835 6e-74
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 7e-74
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 7e-74
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 7e-74
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 3e-71
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 3e-71
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 1e-69
3mkd_A692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 6e-68
2x9h_A695 Crystal Structure Of Myosin-2 Motor Domain In Compl 5e-67
3dtp_A971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 7e-66
3dtp_B973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 7e-66
3j04_A909 Em Structure Of The Heavy Meromyosin Subfragment Of 7e-66
2w4g_M840 Isometrically Contracting Insect Asynchronous Fligh 7e-66
1i84_S1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 2e-65
4a7f_C697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 9e-65
1br1_A820 Smooth Muscle Myosin Motor Domain-Essential Light C 1e-64
2ycu_A995 Crystal Structure Of Human Non Muscle Myosin 2c In 1e-64
4db1_A783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 3e-64
1lkx_A697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 4e-64
1br2_A791 Smooth Muscle Myosin Motor Domain Complexed With Mg 2e-62
1m8q_A840 Molecular Models Of Averaged Rigor Crossbridges Fro 2e-58
2mys_A843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 2e-58
2bki_A858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 9e-58
4e7s_A798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 9e-56
4dbp_A814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 1e-55
2vas_A788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 1e-55
4dbq_A788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 1e-55
2bkh_A814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 1e-55
4dbr_A786 Myosin Vi D179y (md) Pre-powerstroke State Length = 1e-55
2v26_A784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 1e-55
2x51_A789 M6 Delta Insert1 Length = 789 1e-55
3l9i_A814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 1e-55
4e7z_A798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 1e-55
4anj_A1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 2e-55
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure 
Iteration: 1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/617 (38%), Positives = 345/617 (55%), Gaps = 42/617 (6%)
Query: 3   DAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD 62
           D + +   LC R++ T  ET  K +    A  +RDALAK +Y+ LF+W+V+ +N ++   
Sbjct: 367 DYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHST 426
Query: 63  PNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSY 122
               S IGVLDIYGFE+F+ NSFEQFCIN  NEKLQQ FN HVFK+EQEEY KE I W+ 
Sbjct: 427 VKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTL 486
Query: 123 IEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNH-KRFSKPKLAR 181
           I+F DNQ  ++LIE K  G++ LLDE C  P+ + +T+AQKLY T  N    F KP+L+ 
Sbjct: 487 IDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSN 545
Query: 182 SDFTICHYAGDVTYQTELFLDKNKDYVVAEH-QALLSASKCSFVSSLF------------ 228
             F I H+A  V YQ E FL+KNKD V  E  + L S+ K   +  LF            
Sbjct: 546 KAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSA 605
Query: 229 -----LPLAEE----------XXXXXXXXXXXXRFKXXXXXXXXXXXXXXPHYIRCVKPN 273
                +PL+                        +F+              PHY+RC+KPN
Sbjct: 606 TPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPN 665
Query: 274 NLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDE 333
           +   P  F+ K  +QQLR  GV+E IRIS AG+P+R  + EF  R+ +L  K  D  SD 
Sbjct: 666 DFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLM-KQKDVLSDR 724
Query: 334 VTACKRLLEKVGLEG--YQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSR 391
              CK +LEK+ L+   YQ GKTK+F RAGQ+A L+  R + L  +   IQ+ +R +L R
Sbjct: 725 KQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMR 784
Query: 392 KNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVC 451
           K Y+ +RR+AI IQ   RG  AR     +RR  + + IQ+  RMY+ +K Y+ M  + + 
Sbjct: 785 KKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIA 844
Query: 452 IQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARR 511
           +Q  +RG   RN+ +   +   SI+IQ H R +LAR+HY +  KA +  QC +R  +A+R
Sbjct: 845 LQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904
Query: 512 ELRKLKMAARETGALQAAKNKLEKQVEELTWRLQ--------LEKRMRVDMEEAKTQENA 563
           EL+KLK+ AR     +     LE ++ +L  ++         L ++M  ++E   + E  
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN-NLEITYSTETE 963
Query: 564 KLQSALQEMQLQFKESK 580
           KL+S ++ +++  +E+K
Sbjct: 964 KLRSDVERLRMSEEEAK 980
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1122
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 0.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 0.0
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 0.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 0.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-04
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 0.0
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 7e-05
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 0.0
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 8e-08
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 0.0
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 0.0
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 0.0
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 0.0
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 9e-63
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 8e-60
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-18
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 1e-15
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 5e-14
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 1e-13
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 1e-10
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 4e-06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-05
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 3e-05
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 8e-05
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 1e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-04
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 1e-04
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 2e-04
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 7e-04
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
 Score =  830 bits (2145), Expect = 0.0
 Identities = 256/725 (35%), Positives = 392/725 (54%), Gaps = 47/725 (6%)

Query: 1    MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
              D + +   LC R++ T  ET  K +    A  +RDALAK +Y+ LF+W+V+ +N ++ 
Sbjct: 365  GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALH 424

Query: 61   QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
                  S IGVLDIYGFE+F+ NSFEQFCIN  NEKLQQ FN HVFK+EQEEY KE I W
Sbjct: 425  STVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPW 484

Query: 121  SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTF-KNHKRFSKPKL 179
            + I+F DNQ  ++LIE K  G++ LLDE C  P+ + +T+AQKLY T       F KP+L
Sbjct: 485  TLIDFYDNQPCINLIEAKM-GVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRL 543

Query: 180  ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASK-CSFVSSLFLPLAEESS-- 236
            +   F I H+A  V YQ E FL+KNKD V  E   +L +SK    +  LF    +  S  
Sbjct: 544  SNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603

Query: 237  -------------------------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVK 271
                                           ++G +F+  L  L+ETL+++ PHY+RC+K
Sbjct: 604  SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIK 663

Query: 272  PNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSS 331
            PN+   P  F+ K  +QQLR  GV+E IRIS AG+P+R  + EF  R+ +L  +  D  S
Sbjct: 664  PNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQK-DVLS 722

Query: 332  DEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYL 389
            D    CK +LEK+ L  + YQ GKTK+F RAGQ+A L+  R + L  +   IQ+ +R +L
Sbjct: 723  DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWL 782

Query: 390  SRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA 449
             RK Y+ +RR+AI IQ   RG  AR     +RR  + + IQ+  RMY+ +K Y+ M  + 
Sbjct: 783  MRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDAT 842

Query: 450  VCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVA 509
            + +Q  +RG   RN+ +   +   SI+IQ H R +LAR+HY +  KA +  QC +R  +A
Sbjct: 843  IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMA 902

Query: 510  RRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT-------QEN 562
            +REL+KLK+ AR     +     LE ++ +L  ++  + +    + E           E 
Sbjct: 903  KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 563  AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLK 622
             KL+S ++ +++  +E+K    + + + ++ A+    + +       + E       + +
Sbjct: 963  EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Query: 623  TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682
             LVS L+++    + + EE ++   ++ K+  E   K           E K  +++  ++
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK-------KLVEETKQLELDLNDE 1075

Query: 683  ILRQQ 687
             LR Q
Sbjct: 1076 RLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Length = 419 Back     alignment and structure
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Length = 386 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 63 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Length = 64 Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189 Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1122
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 100.0
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 100.0
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 100.0
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 100.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 100.0
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 100.0
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 100.0
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 100.0
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.87
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 99.05
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 99.0
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.88
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.82
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.56
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 98.13
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.93
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 97.49
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.31
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.29
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.07
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.83
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 96.76
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 96.51
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.97
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.93
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.81
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 95.59
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 95.48
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.27
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 95.18
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 95.14
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.07
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 94.92
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 94.8
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 94.5
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 94.32
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 93.54
3bas_A89 Myosin heavy chain, striated muscle/general contro 93.36
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 93.3
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 92.77
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 92.74
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 92.69
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 91.89
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 91.23
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 91.21
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 91.18
4gkw_A167 Spindle assembly abnormal protein 6; double helix, 91.04
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 90.92
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 90.84
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 90.41
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 90.36
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 90.34
2a2f_X325 Exocyst complex component SEC15; all helical struc 90.06
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 89.82
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 89.75
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 89.66
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 89.55
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 89.49
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 88.75
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 88.61
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 88.3
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 87.16
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 86.53
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 85.23
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.17
4h22_A103 Leucine-rich repeat flightless-interacting protei; 84.08
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 83.17
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 83.09
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 82.98
3bas_A89 Myosin heavy chain, striated muscle/general contro 82.92
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 82.56
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 82.38
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 81.67
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 80.67
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 80.54
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 80.38
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 80.28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
Probab=100.00  E-value=4.1e-135  Score=1298.46  Aligned_cols=644  Identities=38%  Similarity=0.627  Sum_probs=524.7

Q ss_pred             CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214            1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF   80 (1122)
Q Consensus         1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f   80 (1122)
                      |||+++|.++||+|++.++||.|++|+++++|..+||||||+||++||+|||.+||.+|+++....+|||||||||||+|
T Consensus       365 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f  444 (1080)
T 2dfs_A          365 GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF  444 (1080)
T ss_dssp             TCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCC
T ss_pred             CCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCcccc
Confidence            89999999999999999999999999999999999999999999999999999999999987777899999999999999


Q ss_pred             CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214           81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF  160 (1122)
Q Consensus        81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~  160 (1122)
                      +.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++ .|||+||||||++|+|||++|
T Consensus       445 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f  523 (1080)
T 2dfs_A          445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTW  523 (1080)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHH
T ss_pred             CcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 699999999999999999999


Q ss_pred             HHHHHHHh-cCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhc-CCcccccccccchhh----
Q 001214          161 AQKLYQTF-KNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSAS-KCSFVSSLFLPLAEE----  234 (1122)
Q Consensus       161 ~~kl~~~~-~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S-~~~~v~~lf~~~~~~----  234 (1122)
                      ++||+.+| ++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++++|++| +++||+.||+.....    
T Consensus       524 ~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~  603 (1080)
T 2dfs_A          524 AQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT  603 (1080)
T ss_dssp             HHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC---------
T ss_pred             HHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhcccccccccc
Confidence            99999998 999999999998899999999999999999999999999999999999999 999999999864210    


Q ss_pred             -----------------------ccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhh
Q 001214          235 -----------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLR  291 (1122)
Q Consensus       235 -----------------------~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr  291 (1122)
                                             ..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++|||
T Consensus       604 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr  683 (1080)
T 2dfs_A          604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLR  683 (1080)
T ss_dssp             ----------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHh
Confidence                                   011235689999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCC--CCcccccceeeeccccccchhhh
Q 001214          292 CGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDAR  369 (1122)
Q Consensus       292 ~~gvle~iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~  369 (1122)
                      |+||+|+|||+++|||+|++|.+|+.||++|+|...+.. |.+++|+.||..+++  ++|++|+||||||+|+++.||.+
T Consensus       684 ~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~  762 (1080)
T 2dfs_A          684 ACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKI  762 (1080)
T ss_dssp             TTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCS-SHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHH
T ss_pred             hcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCC-ChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHH
Confidence            999999999999999999999999999999999866554 899999999999865  48999999999999999999999


Q ss_pred             hhcccchhHHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhhHH
Q 001214          370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA  449 (1122)
Q Consensus       370 r~~~l~~~a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~  449 (1122)
                      |.+.+..+|+.||++||||++|++|.+++.|++.||++|||+++|+.+..+|+..||++||++||||.+|+.|.+++.++
T Consensus       763 R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aa  842 (1080)
T 2dfs_A          763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDAT  842 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214          450 VCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAA  529 (1122)
Q Consensus       450 ~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~  529 (1122)
                      +.||+.|||+.+|+.+..++++.+|+.||++||+|++|+.|.+.+++++.+|+.||++++|+++..++.+++.++++++.
T Consensus       843 i~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~  922 (1080)
T 2dfs_A          843 IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL  922 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001214          530 KNKLEKQVEELTWRLQLEKRMRVDMEEAKT-------QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQE  602 (1122)
Q Consensus       530 ~~~LE~kv~el~~~l~~e~~~~~~le~~~~-------~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e  602 (1122)
                      +.+||+++.+|+++++++++.+.++.+...       +|+.+|++++++++....+.    .+..+.+..+.+++..   
T Consensus       923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~----~~~~~~v~~L~~e~~~---  995 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA----KNATNRVLSLQEEIAK---  995 (1080)
T ss_dssp             ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---
Confidence            999999999999999987766666655433       44444544444444422111    1111222222222211   


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214          603 VPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI  660 (1122)
Q Consensus       603 ~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~  660 (1122)
                          .+++++.+.+++..+++.++.++.   ++++++..+++++..+.+++++++..+
T Consensus       996 ----l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A          996 ----LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                234445555555555555544442   333444455555555555554444433
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens} Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1122
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-137
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 2e-07
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-135
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-07
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 1e-128
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 1e-127
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 5e-04
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 1e-125
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 1e-124
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score =  432 bits (1112), Expect = e-137
 Identities = 163/440 (37%), Positives = 245/440 (55%), Gaps = 20/440 (4%)

Query: 2   CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ 61
            +A  L  +L K ++    E +TK  +      S  ALAK +Y R+F+WLV ++N ++  
Sbjct: 341 INAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT 400

Query: 62  DPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWS 121
                  IGVLDI GFE F  NSFEQ CIN TNE+LQQ FN H+F +EQEEY KE I W 
Sbjct: 401 KAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWE 460

Query: 122 YIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRF------- 174
           +I+F  +  +   + +KP GI+++L+E CMFP++  ++F  KLYQ      R        
Sbjct: 461 FIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKP 520

Query: 175 SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234
           ++P    + F + HYAG+V Y    +L+KNKD +     ALL ASK   V+ LF    E 
Sbjct: 521 TRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEP 580

Query: 235 S-------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVL 287
           +        K+S F +I +  ++ L +L++ L S+ PH++RC+ PN L +P + + + VL
Sbjct: 581 AGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVL 640

Query: 288 QQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVL-DGSSDEVTACKRLLEKVGL 346
            QL+C GV+E IRI   G+P+R  + EF  R+ ILA   +  G  D  T  +++L  + +
Sbjct: 641 HQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQM 700

Query: 347 EG--YQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIH- 403
           +   Y++G TKVF +AG + +L+  R E L +  S+ Q  +R YL RK Y  L+   I  
Sbjct: 701 DPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 760

Query: 404 --IQAACRGQLARTVYESMR 421
             IQ   R  L    ++  +
Sbjct: 761 SVIQRNIRKWLVLRNWQWWK 780
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1122
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 100.0
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 96.94
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 96.85
d2ap3a1185 Hypothetical protein MW0975 (SA0943) {Staphylococc 87.6
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=6.7e-99  Score=939.13  Aligned_cols=417  Identities=39%  Similarity=0.683  Sum_probs=371.6

Q ss_pred             CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214            1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF   80 (1122)
Q Consensus         1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f   80 (1122)
                      |||+++|.++||++++.+++|.+++++++++|..+||+|||+||++||+|||++||..|.+......+||||||||||+|
T Consensus       340 gi~~~~L~~~l~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~lY~~LF~wIV~~IN~~L~~~~~~~~~IgILDIfGFE~f  419 (789)
T d1kk8a2         340 GINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF  419 (789)
T ss_dssp             TSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_pred             CCCHHHhhcceeEEEEecccCceecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcceEEEEeecccceec
Confidence            79999999999999999999999999999999999999999999999999999999999887777889999999999999


Q ss_pred             CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214           81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF  160 (1122)
Q Consensus        81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~  160 (1122)
                      +.|||||||||||||+||++|++++|+.||++|.+|||+|..|+|.||.+++++|.++|.|||++|||||.+|++||++|
T Consensus       420 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~~~~Gll~lLdee~~~~~~td~~~  499 (789)
T d1kk8a2         420 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSF  499 (789)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHHHHHHHTTCTTCCHHHH
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCcCCCHHHHHHHHcCCccHHHHHHhhhcCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999998888888888888999999999999999999999


Q ss_pred             HHHHHHHhcC-CCCcCCCC------CCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh
Q 001214          161 AQKLYQTFKN-HKRFSKPK------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE  233 (1122)
Q Consensus       161 ~~kl~~~~~~-~~~~~~p~------~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~  233 (1122)
                      ++|++..+.+ ++.|.+|.      .++..|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||.....
T Consensus       500 l~kl~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~l~~ll~~S~n~~i~~lf~~~~~  579 (789)
T d1kk8a2         500 QDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE  579 (789)
T ss_dssp             HHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC---
T ss_pred             HHHHHHHhcCCCccccCCCcccccccCCCceeEeccCCccceeccChHHhhhhhhhHHHHHHHHhCccHHHHHHhcCccc
Confidence            9999998754 56666553      2356899999999999999999999999999999999999999999999987532


Q ss_pred             hcc-------CCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCC
Q 001214          234 ESS-------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY  306 (1122)
Q Consensus       234 ~~~-------~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~  306 (1122)
                      ...       ++.+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||+++||
T Consensus       580 ~~~~~~~~~~~~~~~~Tv~~~Fr~sL~~L~~~L~~t~~hFIRCIKPN~~k~p~~Fd~~~V~~QLr~~Gvle~vrirr~Gy  659 (789)
T d1kk8a2         580 PAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGF  659 (789)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCS
T ss_pred             cccccCCCCCCCCCcccHHHHHHHHHHHHHHHHhcCCCeEEEecCCccccCCcccCHHHHHHHHHhhchHHHHHHHHcCC
Confidence            211       1224579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccChHHHHHHHhhhhhccCC-CCcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHHHHHH
Q 001214          307 PTRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQR  383 (1122)
Q Consensus       307 p~r~~~~~F~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~  383 (1122)
                      |+|++|.+|+.||++|+|.... +..|.++.|+.||..++++  +|++|+||||||++++..||.+|.+.+..+++.||+
T Consensus       660 p~R~~f~eF~~ry~~L~~~~~~~~~~~~k~~~~~il~~~~~~~~~~qiGkTkVFlr~~~~~~LE~~r~~~l~~~~~~IQ~  739 (789)
T d1kk8a2         660 PSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQA  739 (789)
T ss_dssp             CEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCChhhEEecCCEEEEChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988654 3468899999999999876  699999999999999999999999999999999999


Q ss_pred             Hhhhcccchhhhchhh---hhHhhhhHhhhhcccccc
Q 001214          384 KVRSYLSRKNYIMLRR---SAIHIQAACRGQLARTVY  417 (1122)
Q Consensus       384 ~~R~~~~R~~y~~~r~---a~i~iQ~~~Rg~lar~~~  417 (1122)
                      +||||++|++|+++|.   |++.||++||||++||.|
T Consensus       740 ~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         740 HIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999876   667778888888776665
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure